Pregenerated sensors for SF3B6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037361

Ensembl transcript IDs: ENSMUST00000046207.9, ENSMUST00000219128.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	CAGGCTGGCATGGTACAGGCAGAGCTGAGAGTTCTACATCTTCACCCTAAGGCTAACACAGCACTCCACTaGGGTTACACTGCTAACAGC	+
Preference number: 2 (lower is better) Translates to: QAGMVQAELRVLHLHPKANTALH*GYTANS Trigger: GCTGTTAGCAGTGTAACCTCAGTGGAGTGCTGTGTT...AGCCTTAGGGTGAAGATGTAGAACTCTCAGCTCTGCCTGTACCATGCCAGCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
3UTR TCA 72 bp	GCTGGCTTACAGGTTCAGAGGCCCAGTCCATTATCATaGTGGCACCCAGGCTGGCATGGTACAGGCAGAGCT	+
Preference number: 3 (lower is better) Translates to: AGLQVQRPSPLS*WHPGWHGTGRA Trigger: AGCTCTGCCTGTACCATGCCAGCCTGGGTGCCATCATGATAATGGACTGGGCCTCTGAACCTGTAAGCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
3UTR TCA 72 bp	ATGATGGCACCCAGGCTGGCATGGTACAGGCAGAGCTaGGAGTTCTACATCTTCACCCTAAGGCTGCTAGTA	+
Preference number: 3 (lower is better) Translates to: MMAPRLAWYRQS*EFYIFTLRLLV Trigger: TACTAGCAGCCTTAGGGTGAAGATGTAGAACTCTCAGCTCTGCCTGTACCATGCCAGCCTGGGTGCCATCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
3UTR TCA 72 bp	TTCTACATCTTCACCCTAAGGCTGCTAGTAGAAGACTaGCCTCTAGGCGGTAGGGTGAGGTCTTGCTCACAG	+
Preference number: 3 (lower is better) Translates to: FYIFTLRLLVED*PLGGRVRSCSQ Trigger: CTGTGAGCAAGACCTCACCCTACCGCCTAGAGGTCAGTCTTCTACTAGCAGCCTTAGGGTGAAGATGTAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
3UTR CCA 72 bp	ATGACCAAGGCAAGTTTTATAAGGACAACATTTAACTaGGGCTGGCTTACAGGTTCAGAGGCCCAGTCCATT	+
Preference number: 3 (lower is better) Translates to: MTKASFIRTTFN*GWLTGSEAQSI Trigger: AATGGACTGGGCCTCTGAACCTGTAAGCCAGCCCCAGTTAAATGTTGTCCTTATAAAACTTGCCTTGGTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
CDS-3UTR TCA 90 bp	TGGCACCCAGGCTGGCATGGTACAGGCAGAGCTGAGAGTTCTACATCTTCACCCATCTGTTACAAACGTTaGATCCTGATAGGTGGTCGC	+
Preference number: 4 (lower is better) Translates to: WHPGWHGTGRAESSTSSPICYKR*ILIGGR Trigger: GCGACCACCTATCAGGATTCAACGTTTGTAACAGAT...GGGTGAAGATGTAGAACTCTCAGCTCTGCCTGTACCATGCCAGCCTGGGTGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
CDS-3UTR TCA 90 bp	CAGGCTGGCATGGTACAGGCAGAGCTGAGAGTTCTACATCTTCACCCTAAGGCTTTGGTGTCCATCTTCTaGAATGCCCGGTTAGCATTG	+
Preference number: 4 (lower is better) Translates to: QAGMVQAELRVLHLHPKALVSIF*NARLAL Trigger: CAATGCTAACCGGGCATTTCAGAAGATGGACACCAA...AGCCTTAGGGTGAAGATGTAGAACTCTCAGCTCTGCCTGTACCATGCCAGCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
CDS-3UTR CCA 90 bp	ACCAAGGCAAGTTTTATAAGGACAACATTTAACTGGGGCTGGCTTACAGGTTCACCGATTTACTTCAGGTaGGAGGCGAATATTCGCCCT	+
Preference number: 4 (lower is better) Translates to: TKASFIRTTFNWGWLTGSPIYFR*EANIRP Trigger: AGGGCGAATATTCGCCTCCCACCTGAAGTAAATCGG...TGAACCTGTAAGCCAGCCCCAGTTAAATGTTGTCCTTATAAAACTTGCCTTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
CDS-3UTR GCA 90 bp	CCCAGCACAAGCACCTCAGTCCTTAGCTCATCTATAACCTACATGTGTTTCTCCGTCCATCTTCTGAAATaGCCGGTTAGCATTGTAATA	+
Preference number: 4 (lower is better) Translates to: PSTSTSVLSSSITYMCFSVHLLK*PVSIVI Trigger: TATTACAATGCTAACCGGGCATTTCAGAAGATGGAC...GGAGAAACACATGTAGGTTATAGATGAGCTAAGGACTGAGGTGCTTGTGCTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
CDS-3UTR TCA 90 bp	ACCAAGGCAAGTTTTATAAGGACAACATTTAACTGGGGCTGGCTTACAGGTTCATGCCATACTTTTCCTTaGGAAGTTTCAGCTGCTCCT	+
Preference number: 4 (lower is better) Translates to: TKASFIRTTFNWGWLTGSCHTFP*EVSAAP Trigger: AGGAGCAGCTGAAACTTCTCAAGGAAAAGTATGGCA...TGAACCTGTAAGCCAGCCCCAGTTAAATGTTGTCCTTATAAAACTTGCCTTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
CDS-3UTR CAA 90 bp	ACAGCCAGGCTCCCCAGGCCGAGCGTCCCCAGCACAAGCACCTCAGTCCTTAGCTTGGGAGGATCTGTGTaGATGCCATACTTTTCCTTG	+
Preference number: 5 (lower is better) Translates to: TARLPRPSVPSTSTSVLSLGGSV*MPYFSL Trigger: CAAGGAAAAGTATGGCATCAACACAGATCCTCCCAA...GCTAAGGACTGAGGTGCTTGTGCTGGGGACGCTCGGCCTGGGGAGCCTGGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
CDS-3UTR CAA 90 bp	CCTCTAGGCGGTAGGGTGAGGTCTTGCTCACAGCAACACAGCACTCCACTGAGGATGCCATACTTTTCCTaGAGAAGTTTCAGCTGCTCC	+
Preference number: 5 (lower is better) Translates to: PLGGRVRSCSQQHSTPLRMPYFS*RSFSCS Trigger: GGAGCAGCTGAAACTTCTCAAGGAAAAGTATGGCAT...CCTCAGTGGAGTGCTGTGTTGCTGTGAGCAAGACCTCACCCTACCGCCTAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
CDS-3UTR CAA 90 bp	CAGGCTGGCATGGTACAGGCAGAGCTGAGAGTTCTACATCTTCACCCTAAGGCTTATCTGTTACAAACGTaGAATCCTGATAGGTGGTCG	+
Preference number: 5 (lower is better) Translates to: QAGMVQAELRVLHLHPKAYLLQT*NPDRWS Trigger: CGACCACCTATCAGGATTCAACGTTTGTAACAGATA...AGCCTTAGGGTGAAGATGTAGAACTCTCAGCTCTGCCTGTACCATGCCAGCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046207.9
CDS CCA 72 bp	ACAAGGTATCTGTTACAAACGTTGAATCCTGATAGGTaGTCGCAGGCATTCTTAGCATCAAAGATGTCCTCA	+
Preference number: 6 (lower is better) Translates to: TRYLLQTLNPDR*SQAFLASKMSS Trigger: TGAGGACATCTTTGATGCTAAGAATGCCTGCGACCACCTATCAGGATTCAACGTTTGTAACAGATACCTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046207.9 ENSMUST00000219128.2