RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SF3B5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078348

Ensembl transcript IDs: ENSMUST00000105139.5

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp AGGTCAGGCGACACAGCCAACACGGAATGGTCGAGATaGAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGG +
Preference number: 3 (lower is better)
Translates to: RSGDTANTEWSR*RSKEARSRHTG
Trigger: CCCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTCCGTGTTGGCTGTGTCGCCTGACCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
3UTR GCA 72 bp AATGCGCATCACTCTCGTGCAGTCTTCTCCCTCGCTTaGCGATGCTGGGATCACTCCTTCTGCACAGTTCAC +
Preference number: 3 (lower is better)
Translates to: NAHHSRAVFSLA*RCWDHSFCTVH
Trigger: GTGAACTGTGCAGAAGGAGTGATCCCAGCATCGGCAAGCGAGGGAGAAGACTGCACGAGAGTGATGCGCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR CCA 90 bp TCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGGAAGACTGGGCAGTGCTCCAGCTGGCTGTaGATGGTGTACCGGTCCGTC +
Preference number: 4 (lower is better)
Translates to: SRCRSKEARSRHTGKTGQCSSWL*MVYRSV
Trigger: GACGGACCGGTACACCATCCACAGCCAGCTGGAGCA...CTGCCCAGTCTTCCCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR CCA 90 bp AATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGGAAGACTGGCCATTCCCACTTGGTaGTGTCGGCGTGGCCCGTGC +
Preference number: 4 (lower is better)
Translates to: NGRDAGARRLAAGTRGRLAIPTW*CRRGPC
Trigger: GCACGGGCCACGCCGACACCACCAAGTGGGAATGGC...CAGTCTTCCCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR CCA 90 bp CACAGCCAACACGGAATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACCAGCCATTCCCACTTaGTGGTGTCGGCGTGGCCCG +
Preference number: 4 (lower is better)
Translates to: HSQHGMVEMQEQGGSQPAPAIPT*WCRRGP
Trigger: CGGGCCACGCCGACACCACCAAGTGGGAATGGCTGG...TGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTCCGTGTTGGCTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR GCA 90 bp AACACGGAATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGGTGTCGGCGTGGCCCGTaGCGATGTACTTGGACTGCA +
Preference number: 4 (lower is better)
Translates to: NTEWSRCRSKEARSRHTGCRRGP*RCTWTA
Trigger: TGCAGTCCAAGTACATCGGCACGGGCCACGCCGACA...CCCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTCCGTGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR GCA 90 bp GAATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGGAAGACTGGCGGCCCGCTGGGCTaGAGCATTTTCTCCATCAGG +
Preference number: 4 (lower is better)
Translates to: EWSRCRSKEARSRHTGKTGGPLG*SIFSIR
Trigger: CCTGATGGAGAAAATGCTGCAGCCCAGCGGGCCGCC...AGTCTTCCCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR CCA 90 bp CAACACGGAATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGTTGGTGGTGTCGGCGTaGCCCGTGCCGATGTACTTG +
Preference number: 4 (lower is better)
Translates to: QHGMVEMQEQGGSQPAHGLVVSA*PVPMYL
Trigger: CAAGTACATCGGCACGGGCCACGCCGACACCACCAA...CCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTCCGTGTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR GCA 90 bp CAACACGGAATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGCCGATGTACTTGGACTaGAGATGCTCCAGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: QHGMVEMQEQGGSQPAHGPMYLD*RCSSWL
Trigger: CAGCCAGCTGGAGCATCTGCAGTCCAAGTACATCGG...CCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTCCGTGTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR CCA 90 bp GAATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGGAAGACTTGCAGATGCTCCAGCTaGCTGTGGATGGTGTACCGG +
Preference number: 4 (lower is better)
Translates to: EWSRCRSKEARSRHTGKTCRCSS*LWMVYR
Trigger: CCGGTACACCATCCACAGCCAGCTGGAGCATCTGCA...AGTCTTCCCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR TCA 90 bp CACAGCCAACACGGAATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACAATGGCGAAGTAGTTaGGGAGGTCGAAGTGGCCCA +
Preference number: 4 (lower is better)
Translates to: HSQHGMVEMQEQGGSQPAQWRSS*GGRSGP
Trigger: TGGGCCACTTCGACCTCCTCAACTACTTCGCCATTG...TGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTCCGTGTTGGCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR CCA 90 bp GAATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGGAAGACTCCGTGCCGATGTACTTaGACTGCAGATGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: EWSRCRSKEARSRHTGKTPCRCT*TADAPA
Trigger: AGCTGGAGCATCTGCAGTCCAAGTACATCGGCACGG...AGTCTTCCCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR CAA 90 bp TCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGGAAGACTGGGCAGACCAGCCATTCCCACTaGGTGGTGTCGGCGTGGCCC +
Preference number: 5 (lower is better)
Translates to: SRCRSKEARSRHTGKTGQTSHSH*VVSAWP
Trigger: GGGCCACGCCGACACCACCAAGTGGGAATGGCTGGT...CTGCCCAGTCTTCCCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS TCA 90 bp TGTCCGCGGGCGGCCCGCTGGGCTGCAGCATTTTCTCCATCAGGTTaGACCGCACGCGGGCTTTGCTCTCGTTCTCGGCAATGGCGAAGT +
Preference number: 5 (lower is better)
Translates to: CPRAARWAAAFSPSG*TARGLCSRSRQWRS
Trigger: ACTTCGCCATTGCCGAGAACGAGAGCAAAGCCCGCGTGCGGTTCAACCTGATGGAGAAAATGCTGCAGCCCAGCGGGCCGCCCGCGGACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CCA 90 bp GCCATTCCCACTTGGTGGTGTCGGCGTGGCCCGTGCCGATGTACTTaGACTGCAGATGCTCCAGCTGGCTGTGGATGGTGTACCGGTCCG +
Preference number: 5 (lower is better)
Translates to: AIPTWWCRRGPCRCT*TADAPAGCGWCTGP
Trigger: CGGACCGGTACACCATCCACAGCCAGCTGGAGCATCTGCAGTCCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGTGGGAATGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CCA 90 bp TCGCGGTGCTGGTTCACCAGCCATTCCCACTTGGTGGTGTCGGCGTaGCCCGTGCCGATGTACTTGGACTGCAGATGCTCCAGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: SRCWFTSHSHLVVSA*PVPMYLDCRCSSWL
Trigger: CAGCCAGCTGGAGCATCTGCAGTCCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGTGGGAATGGCTGGTGAACCAGCACCGCGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS GCA 90 bp GCTGGTTCACCAGCCATTCCCACTTGGTGGTGTCGGCGTGGCCCGTaGCGATGTACTTGGACTGCAGATGCTCCAGCTGGCTGTGGATGG +
Preference number: 5 (lower is better)
Translates to: AGSPAIPTWWCRRGP*RCTWTADAPAGCGW
Trigger: CCATCCACAGCCAGCTGGAGCATCTGCAGTCCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGTGGGAATGGCTGGTGAACCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR CAA 90 bp GAATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGGAAGACTCCCGTGCCGATGTACTaGGACTGCAGATGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: EWSRCRSKEARSRHTGKTPVPMY*DCRCSS
Trigger: GCTGGAGCATCTGCAGTCCAAGTACATCGGCACGGG...AGTCTTCCCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CCA 90 bp AGCAGTAGGAGTCGCGGTGCTGGTTCACCAGCCATTCCCACTTGGTaGTGTCGGCGTGGCCCGTGCCGATGTACTTGGACTGCAGATGCT +
Preference number: 5 (lower is better)
Translates to: SSRSRGAGSPAIPTW*CRRGPCRCTWTADA
Trigger: AGCATCTGCAGTCCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGTGGGAATGGCTGGTGAACCAGCACCGCGACTCCTACTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CCA 90 bp AGGAGCAGTAGGAGTCGCGGTGCTGGTTCACCAGCCATTCCCACTTaGTGGTGTCGGCGTGGCCCGTGCCGATGTACTTGGACTGCAGAT +
Preference number: 5 (lower is better)
Translates to: RSSRSRGAGSPAIPT*WCRRGPCRCTWTAD
Trigger: ATCTGCAGTCCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGTGGGAATGGCTGGTGAACCAGCACCGCGACTCCTACTGCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS TCA 90 bp ACCGCACGCGGGCTTTGCTCTCGTTCTCGGCAATGGCGAAGTAGTTaGGGAGGTCGAAGTGGCCCATGTAGGAGCAGTAGGAGTCGCGGT +
Preference number: 5 (lower is better)
Translates to: TARGLCSRSRQWRSS*GGRSGPCRSSRSRG
Trigger: ACCGCGACTCCTACTGCTCCTACATGGGCCACTTCGACCTCCTCAACTACTTCGCCATTGCCGAGAACGAGAGCAAAGCCCGCGTGCGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS-3UTR CAA 90 bp AACACGGAATGGTCGAGATGCAGGAGCAAGGAGGCTCGCAGCCGGCACACGGGGATTTTCTCCATCAGGTaGAACCGCACGCGGGCTTTG +
Preference number: 5 (lower is better)
Translates to: NTEWSRCRSKEARSRHTGIFSIR*NRTRAL
Trigger: CAAAGCCCGCGTGCGGTTCAACCTGATGGAGAAAAT...CCCCGTGTGCCGGCTGCGAGCCTCCTTGCTCCTGCATCTCGACCATTCCGTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS GCA 72 bp TTCTCCTCGGGCTTGTCCGCGGGCGGCCCGCTGGGCTaGAGCATTTTCTCCATCAGGTTGAACCGCACGCGG +
Preference number: 6 (lower is better)
Translates to: FSSGLSAGGPLG*SIFSIRLNRTR
Trigger: CCGCGTGCGGTTCAACCTGATGGAGAAAATGCTGCAGCCCAGCGGGCCGCCCGCGGACAAGCCCGAGGAGAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS GCA 72 bp GTGGTGTCGGCGTGGCCCGTGCCGATGTACTTGGACTaGAGATGCTCCAGCTGGCTGTGGATGGTGTACCGG +
Preference number: 6 (lower is better)
Translates to: VVSAWPVPMYLD*RCSSWLWMVYR
Trigger: CCGGTACACCATCCACAGCCAGCTGGAGCATCTGCAGTCCAAGTACATCGGCACGGGCCACGCCGACACCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS GCA 72 bp CCAGCCATTCCCACTTGGTGGTGTCGGCGTGGCCCGTaGCGATGTACTTGGACTGCAGATGCTCCAGCTGGC +
Preference number: 6 (lower is better)
Translates to: PAIPTWWCRRGP*RCTWTADAPAG
Trigger: GCCAGCTGGAGCATCTGCAGTCCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGTGGGAATGGCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CCA 72 bp AGGAGTCGCGGTGCTGGTTCACCAGCCATTCCCACTTaGTGGTGTCGGCGTGGCCCGTGCCGATGTACTTGG +
Preference number: 6 (lower is better)
Translates to: RSRGAGSPAIPT*WCRRGPCRCTW
Trigger: CCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGTGGGAATGGCTGGTGAACCAGCACCGCGACTCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CAA 72 bp GGCGGCCCGCTGGGCTGCAGCATTTTCTCCATCAGGTaGAACCGCACGCGGGCTTTGCTCTCGTTCTCGGCA +
Preference number: 6 (lower is better)
Translates to: GGPLGCSIFSIR*NRTRALLSFSA
Trigger: TGCCGAGAACGAGAGCAAAGCCCGCGTGCGGTTCAACCTGATGGAGAAAATGCTGCAGCCCAGCGGGCCGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CAA 90 bp TTGTCCGCGGGCGGCCCGCTGGGCTGCAGCATTTTCTCCATCAGGTaGAACCGCACGCGGGCTTTGCTCTCGTTCTCGGCAATGGCGAAG +
Preference number: 6 (lower is better)
Translates to: LSAGGPLGCSIFSIR*NRTRALLSFSAMAK
Trigger: CTTCGCCATTGCCGAGAACGAGAGCAAAGCCCGCGTGCGGTTCAACCTGATGGAGAAAATGCTGCAGCCCAGCGGGCCGCCCGCGGACAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CAA 90 bp AGCCATTCCCACTTGGTGGTGTCGGCGTGGCCCGTGCCGATGTACTaGGACTGCAGATGCTCCAGCTGGCTGTGGATGGTGTACCGGTCC +
Preference number: 6 (lower is better)
Translates to: SHSHLVVSAWPVPMY*DCRCSSWLWMVYRS
Trigger: GGACCGGTACACCATCCACAGCCAGCTGGAGCATCTGCAGTCCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGTGGGAATGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS TCA 72 bp GCGGCCCGCTGGGCTGCAGCATTTTCTCCATCAGGTTaGACCGCACGCGGGCTTTGCTCTCGTTCTCGGCAA +
Preference number: 6 (lower is better)
Translates to: AARWAAAFSPSG*TARGLCSRSRQ
Trigger: TTGCCGAGAACGAGAGCAAAGCCCGCGTGCGGTTCAACCTGATGGAGAAAATGCTGCAGCCCAGCGGGCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CCA 72 bp AGTCGCGGTGCTGGTTCACCAGCCATTCCCACTTGGTaGTGTCGGCGTGGCCCGTGCCGATGTACTTGGACT +
Preference number: 6 (lower is better)
Translates to: SRGAGSPAIPTW*CRRGPCRCTWT
Trigger: AGTCCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGTGGGAATGGCTGGTGAACCAGCACCGCGACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CCA 72 bp ACTTGGTGGTGTCGGCGTGGCCCGTGCCGATGTACTTaGACTGCAGATGCTCCAGCTGGCTGTGGATGGTGT +
Preference number: 6 (lower is better)
Translates to: TWWCRRGPCRCT*TADAPAGCGWC
Trigger: ACACCATCCACAGCCAGCTGGAGCATCTGCAGTCCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS CCA 72 bp TGGTTCACCAGCCATTCCCACTTGGTGGTGTCGGCGTaGCCCGTGCCGATGTACTTGGACTGCAGATGCTCC +
Preference number: 6 (lower is better)
Translates to: WFTSHSHLVVSA*PVPMYLDCRCS
Trigger: GGAGCATCTGCAGTCCAAGTACATCGGCACGGGCCACGCCGACACCACCAAGTGGGAATGGCTGGTGAACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5
CDS TCA 72 bp GGGCTTTGCTCTCGTTCTCGGCAATGGCGAAGTAGTTaGGGAGGTCGAAGTGGCCCATGTAGGAGCAGTAGG +
Preference number: 6 (lower is better)
Translates to: GLCSRSRQWRSS*GGRSGPCRSSR
Trigger: CCTACTGCTCCTACATGGGCCACTTCGACCTCCTCAACTACTTCGCCATTGCCGAGAACGAGAGCAAAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105139.5