Pregenerated sensors for SF3B4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068856Ensembl transcript IDs: ENSMUST00000076372.5
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | AAACACCTTCCCTTTTTCATACTGTTCCTCCCACAAACCCAGACTCCTCCTAAAGTCAGTACATTAGCCTaGACAAGCTACAGCATCTCT | + |
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Preference number: 3 (lower is better) Translates to: KHLPFFILFLPQTQTPPKVSTLA*TSYSIS Trigger: AGAGATGCTGTAGCTTGTCAAGGCTAATGTACTGAC...TTTAGGAGGAGTCTGGGTTTGTGGGAGGAACAGTATGAAAAAGGGAAGGTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| 3UTR-3UTR CAA 90 bp | AATCCTTACAATGTAAACACCTTCCCTTTTTCATACTGTTCCTCCCACAAACCCGTGGAAAACATGACATaGGAATGGGGACAGAGTTAC | + |
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Preference number: 3 (lower is better) Translates to: NPYNVNTFPFSYCSSHKPVENMT*EWGQSY Trigger: GTAACTCTGTCCCCATTCCAATGTCATGTTTTCCAC...GGGTTTGTGGGAGGAACAGTATGAAAAAGGGAAGGTGTTTACATTGTAAGGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | CTCCCACAAACCCAGACTCCTCCTAAAAGTTACTTCACCAGAGAACAAACAAGACCCGGAGGCCCAGCATaGGGGTGTCCTAGGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: LPQTQTPPKSYFTREQTRPGGPA*GCPRPW Trigger: CCATGGCCTAGGACACCCCCATGCTGGGCCTCCGGG...TCTTGTTTGTTCTCTGGTGAAGTAACTTTTAGGAGGAGTCTGGGTTTGTGGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | TACAATGTAAACACCTTCCCTTTTTCATACTGTTCCTCCCACAAACCCAGACTCGGGATGTCCAGCCCCTaGAGTCCCTGCTGCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: YNVNTFPFSYCSSHKPRLGMSSP*SPCCWG Trigger: CCCCCAGCAGCAGGGACTCCAGGGGCTGGACATCCC...GAGTCTGGGTTTGTGGGAGGAACAGTATGAAAAAGGGAAGGTGTTTACATTGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | ATTGGAATGGGGACAGAGTTACTGAGAAGGGTCAGTACATTAGCCTTGACAAGCACCACGAGGTGGAACTaGGGGCCGTGGAGTGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: IGMGTELLRRVSTLALTSTTRWN*GPWSGS Trigger: AGACCCACTCCACGGCCCCCAGTTCCACCTCGTGGT...GCTTGTCAAGGCTAATGTACTGACCCTTCTCAGTAACTCTGTCCCCATTCCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR GCA 90 bp | TACAATGTAAACACCTTCCCTTTTTCATACTGTTCCTCCCACAAACCCAGACTCGAGGAGGCCCACGCATaGCGTGTGGAGGCATGGGAC | + |
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Preference number: 4 (lower is better) Translates to: YNVNTFPFSYCSSHKPRLEEAHA*RVEAWD Trigger: GTCCCATGCCTCCACACGGCATGCGTGGGCCTCCTC...GAGTCTGGGTTTGTGGGAGGAACAGTATGAAAAAGGGAAGGTGTTTACATTGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | ACCCAGACTCCTCCTAAAAGTTACTTCACCAGAGAACAAACAAGAAGCATAGTTGGGTGTCCTAGGCCATaGGGGCCATGGTGGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: TQTPPKSYFTREQTRSIVGCPRP*GPWWAS Trigger: GCTGGCCCACCATGGCCCCCATGGCCTAGGACACCC...AACTATGCTTCTTGTTTGTTCTCTGGTGAAGTAACTTTTAGGAGGAGTCTGGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | AAACACCTTCCCTTTTTCATACTGTTCCTCCCACAAACCCAGACTCCTCCTAAACATCTGGGACATCCCTaGATGGGGCATCCCACCTGG | + |
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Preference number: 4 (lower is better) Translates to: KHLPFFILFLPQTQTPPKHLGHP*MGHPTW Trigger: CCAGGTGGGATGCCCCATCCAGGGATGTCCCAGATG...TTTAGGAGGAGTCTGGGTTTGTGGGAGGAACAGTATGAAAAAGGGAAGGTGTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | TACAATGTAAACACCTTCCCTTTTTCATACTGTTCCTCCCACAAACCCAGACTCCCCAGGAGGTGGCACTaGAGGTGGAAAAGAGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: YNVNTFPFSYCSSHKPRLPRRWH*RWKRAR Trigger: CCTGGCTCTTTTCCACCTCCAGTGCCACCTCCTGGG...GAGTCTGGGTTTGTGGGAGGAACAGTATGAAAAAGGGAAGGTGTTTACATTGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | TTCCCTTTTTCATACTGTTCCTCCCACAAACCCAGACTCCTCCTAAAAGTTACTATGAGGGGGCATCAATaGAGGAGGCCCACGCATGCC | + |
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Preference number: 4 (lower is better) Translates to: FPFSYCSSHKPRLLLKVTMRGHQ*RRPTHA Trigger: GGCATGCGTGGGCCTCCTCCATTGATGCCCCCTCAT...AGTAACTTTTAGGAGGAGTCTGGGTTTGTGGGAGGAACAGTATGAAAAAGGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR TCA 90 bp | AAACACCTTCCCTTTTTCATACTGTTCCTCCCACAAACCCAGACTCCTCCTAAATACACCGTGGCATCCTaGTTCCGTTCGGAGATCGGT | + |
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Preference number: 4 (lower is better) Translates to: KHLPFFILFLPQTQTPPKYTVAS*FRSEIG Trigger: ACCGATCTCCGAACGGAATCAGGATGCCACGGTGTA...TTTAGGAGGAGTCTGGGTTTGTGGGAGGAACAGTATGAAAAAGGGAAGGTGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | ACCCAGACTCCTCCTAAAAGTTACTTCACCAGAGAACAAACAAGAAGCATAGTTCGCCCACGTACACCGTaGCATCCTGATTCCGTTCGG | + |
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Preference number: 4 (lower is better) Translates to: TQTPPKSYFTREQTRSIVRPRTP*HPDSVR Trigger: CCGAACGGAATCAGGATGCCACGGTGTACGTGGGCG...AACTATGCTTCTTGTTTGTTCTCTGGTGAAGTAACTTTTAGGAGGAGTCTGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | AAACATGACATTGGAATGGGGACAGAGTTACTGAGAAGGGTCAGTACATTAGCCTCAGCTGCTGAGCCATaGCGTTCACCCTTAGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: KHDIGMGTELLRRVSTLASAAEP*RSPLES Trigger: GGACTCTAAGGGTGAACGCCATGGCTCAGCAGCTGA...GGCTAATGTACTGACCCTTCTCAGTAACTCTGTCCCCATTCCAATGTCATGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR GCA 90 bp | AAGATAAATCCTTACAATGTAAACACCTTCCCTTTTTCATACTGTTCCTCCCACAGAGGGCGGAGGGGGTaGATCGGCAAACAGCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: KINPYNVNTFPFSYCSSHRGRRG*IGKQLV Trigger: CACCAGCTGTTTGCCGATGCACCCCCTCCGCCCTCT...GTGGGAGGAACAGTATGAAAAAGGGAAGGTGTTTACATTGTAAGGATTTATCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | ACCCAGACTCCTCCTAAAAGTTACTTCACCAGAGAACAAACAAGAAGCATAGTTGACCTGGGTGACCCATaGGAGATCCAAAAGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: TQTPPKSYFTREQTRSIVDLGDP*EIQKEA Trigger: GGCCTCCTTTTGGATCTCCCATGGGTCACCCAGGTC...AACTATGCTTCTTGTTTGTTCTCTGGTGAAGTAACTTTTAGGAGGAGTCTGGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | CAAGATAAATCCTTACAATGTAAACACCTTCCCTTTTTCATACTGTTCCTCCCAGAGGGCCCCAGGAGGTaGCACTGGAGGTGGAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: QDKSLQCKHLPFFILFLPEGPRR*HWRWKR Trigger: TCTTTTCCACCTCCAGTGCCACCTCCTGGGGCCCTC...TGGGAGGAACAGTATGAAAAAGGGAAGGTGTTTACATTGTAAGGATTTATCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | ACCCAGACTCCTCCTAAAAGTTACTTCACCAGAGAACAAACAAGAAGCATAGTTATAGGGAGGGGGTCTTaGAGGACCCGTGTATCCATG | + |
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Preference number: 4 (lower is better) Translates to: TQTPPKSYFTREQTRSIVIGRGS*RTRVSM Trigger: CATGGATACACGGGTCCTCCAAGACCCCCTCCCTAT...AACTATGCTTCTTGTTTGTTCTCTGGTGAAGTAACTTTTAGGAGGAGTCTGGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CCA 90 bp | CAAGATAAATCCTTACAATGTAAACACCTTCCCTTTTTCATACTGTTCCTCCCAAAGAGGACCACGAGGTaGAACTGGGGGCCGTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: QDKSLQCKHLPFFILFLPKRTTR*NWGPWS Trigger: ACTCCACGGCCCCCAGTTCCACCTCGTGGTCCTCTT...TGGGAGGAACAGTATGAAAAAGGGAAGGTGTTTACATTGTAAGGATTTATCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR GCA 90 bp | AAGATAAATCCTTACAATGTAAACACCTTCCCTTTTTCATACTGTTCCTCCCACGTTGACCACTGGCCCTaGCTGGAGAAAGAGCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: KINPYNVNTFPFSYCSSHVDHWP*LEKELP Trigger: TGGGAGCTCTTTCTCCAGGCAGGGCCAGTGGTCAAC...GTGGGAGGAACAGTATGAAAAAGGGAAGGTGTTTACATTGTAAGGATTTATCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR TCA 90 bp | CTCCCACAAACCCAGACTCCTCCTAAAAGTTACTTCACCAGAGAACAAACAAGAGGTCCAGATTTCCAATaGAAATGTTGGCTCCCACAT | + |
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Preference number: 4 (lower is better) Translates to: LPQTQTPPKSYFTREQTRGPDFQ*KCWLPH Trigger: ATGTGGGAGCCAACATTTTCATTGGAAATCTGGACC...TCTTGTTTGTTCTCTGGTGAAGTAACTTTTAGGAGGAGTCTGGGTTTGTGGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR GCA 90 bp | ACCCAGACTCCTCCTAAAAGTTACTTCACCAGAGAACAAACAAGAAGCATAGTTGTTCATGGCCTCAATTaGTGCATCCGAAGCATCGAA | + |
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Preference number: 4 (lower is better) Translates to: TQTPPKSYFTREQTRSIVVHGLN*CIRSIE Trigger: TTCGATGCTTCGGATGCAGCAATTGAGGCCATGAAC...AACTATGCTTCTTGTTTGTTCTCTGGTGAAGTAACTTTTAGGAGGAGTCTGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR GCA 90 bp | ACATGCAAGATAAATCCTTACAATGTAAACACCTTCCCTTTTTCATACTGTTCCCATGGCCTCAATTGCTaGATCCGAAGCATCGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: TCKINPYNVNTFPFSYCSHGLNC*IRSIEG Trigger: TCCTTCGATGCTTCGGATGCAGCAATTGAGGCCATG...GGAACAGTATGAAAAAGGGAAGGTGTTTACATTGTAAGGATTTATCTTGCATGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CAA 90 bp | CTCCCACAAACCCAGACTCCTCCTAAAAGTTACTTCACCAGAGAACAAACAAGAGATGAAACCACGGGATaGGGGGCAGAGGGCGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: LPQTQTPPKSYFTREQTRDETTG*GAEGGG Trigger: CCCTCCGCCCTCTGCCCCCAATCCCGTGGTTTCATC...TCTTGTTTGTTCTCTGGTGAAGTAACTTTTAGGAGGAGTCTGGGTTTGTGGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CAA 90 bp | AAACATGACATTGGAATGGGGACAGAGTTACTGAGAAGGGTCAGTACATTAGCCGGGTCCCGCATGATCTaGGGGGTCTGTAGGATGACT | + |
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Preference number: 5 (lower is better) Translates to: KHDIGMGTELLRRVSTLAGSRMI*GVCRMT Trigger: AGTCATCCTACAGACCCCCAAGATCATGCGGGACCC...GGCTAATGTACTGACCCTTCTCAGTAACTCTGTCCCCATTCCAATGTCATGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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| CDS-3UTR CAA 90 bp | CTCCCACAAACCCAGACTCCTCCTAAAAGTTACTTCACCAGAGAACAAACAAGACGTTCATGGCCTCAATaGCTGCATCCGAAGCATCGA | + |
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Preference number: 5 (lower is better) Translates to: LPQTQTPPKSYFTREQTRRSWPQ*LHPKHR Trigger: TCGATGCTTCGGATGCAGCAATTGAGGCCATGAACG...TCTTGTTTGTTCTCTGGTGAAGTAACTTTTAGGAGGAGTCTGGGTTTGTGGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076372.5 |
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