RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SF3B3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033732

Ensembl transcript IDs: ENSMUST00000042012.7

Found 277 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTTTTATATATTCAGGAGGGTTCCGAGGGCAGAACTGAGCCACACTaGAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTC +
Preference number: 1 (lower is better)
Translates to: VLYIQEGSEGRTEPH*NQPGCTFACLPSSL
Trigger: GAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGCTCAGTTCTGCCCTCGGAACCCTCCTGAATATATAAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR TCA 90 bp TTAAAAACTAGTTTTATATATTCAGGAGGGTTCCGAGGGCAGAACTaGGCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCC +
Preference number: 1 (lower is better)
Translates to: LKTSFIYSGGFRGQN*ATLQSAWLHLCLPP
Trigger: GGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGCTCAGTTCTGCCCTCGGAACCCTCCTGAATATATAAAACTAGTTTTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR GCA 90 bp GGCAGAACTGAGCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTaGCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTT +
Preference number: 1 (lower is better)
Translates to: GRTEPHCNQPGCTFA*LPSSLKATLYKTVF
Trigger: AAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGCTCAGTTCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR TCA 90 bp ACTTCAGTGTCAACTGTAGGGAACCAGTCATTCAAAGGGGAGAGTTaGGGGTGCAGAGCTACTGGCTTTAACAATGCAGTCTTAAATACC +
Preference number: 1 (lower is better)
Translates to: TSVSTVGNQSFKGES*GCRATGFNNAVLNT
Trigger: GGTATTTAAGACTGCATTGTTAAAGCCAGTAGCTCTGCACCCTCAACTCTCCCCTTTGAATGACTGGTTCCCTACAGTTGACACTGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR TCA 90 bp CTCCACAGCAAAGAACCAAGACACACTAAGAAAACACTAGAGCCATaGTGTCCACACAAGAGCAAAGAAGTAAAAGATCCAGTTATTGTT +
Preference number: 1 (lower is better)
Translates to: LHSKEPRHTKKTLEP*CPHKSKEVKDPVIV
Trigger: AACAATAACTGGATCTTTTACTTCTTTGCTCTTGTGTGGACATCATGGCTCTAGTGTTTTCTTAGTGTGTCTTGGTTCTTTGCTGTGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR CAA 90 bp CCGAGGGCAGAACTGAGCCACACTGCAATCAGCCTGGCTGCACCTTaGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTG +
Preference number: 2 (lower is better)
Translates to: PRAELSHTAISLAAP*LASLHLSKQHCTKL
Trigger: CAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGCTCAGTTCTGCCCTCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR-3UTR CCA 90 bp CCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTGCAAAAGCCAGACACTaGCAATGGGAACAAAAGAGG +
Preference number: 2 (lower is better)
Translates to: PKLRATHYVQGADFSVNCAKARH*QWEQKR
Trigger: CCTCTTTTGTTCCCATTGCCAGTGTCTGGCTTTTGC...ACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR-3UTR CCA 90 bp TTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTATCACTTCTGCTGTGTaGCAAAAGCCAGACACTGGC +
Preference number: 2 (lower is better)
Translates to: LGIRKTVFHTEAQGHTLCITSAV*QKPDTG
Trigger: GCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGAT...ACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR-3UTR TCA 90 bp ATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCAAAGAACCAAGACACTTCAAAGGGGAGAGTTaGGGGTGCAGAGCTACTGGC +
Preference number: 2 (lower is better)
Translates to: IYMVSELMFYLHSKEPRHFKGES*GCRATG
Trigger: GCCAGTAGCTCTGCACCCTCAACTCTCCCCTTTGAA...GTGTCTTGGTTCTTTGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR-3UTR GCA 90 bp ATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCAAAGAACCAAGACACGCCTGGCTGCACCTTTaGTTGCCTCCCTTCATCTCT +
Preference number: 2 (lower is better)
Translates to: IYMVSELMFYLHSKEPRHAWLHL*LPPFIS
Trigger: AGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGC...GTGTCTTGGTTCTTTGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR-3UTR CCA 90 bp AGCAAAGAAGTAAAAGATCCAGTTATTGTTCTAATTAGGCCTCAAGCCTTTCTCGCCAGACACTGGCAATaGGAACAAAAGAGGGGCTCT +
Preference number: 2 (lower is better)
Translates to: SKEVKDPVIVLIRPQAFLARHWQ*EQKRGS
Trigger: AGAGCCCCTCTTTTGTTCCCATTGCCAGTGTCTGGC...GAGAAAGGCTTGAGGCCTAATTAGAACAATAACTGGATCTTTTACTTCTTTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR-3UTR GCA 90 bp GGGAAAGGGAAAACACCCTCTTTAATATCCATGAATAGTGGGGTTACATTTACAATACCACATCACTTCTaGTGTGTGGCAAAAGCCAGA +
Preference number: 2 (lower is better)
Translates to: GKGKTPSLISMNSGVTFTIPHHF*CVAKAR
Trigger: TCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTAT...TGTAAATGTAACCCCACTATTCATGGATATTAAAGAGGGTGTTTTCCCTTTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR-3UTR CAA 90 bp CGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTAATTCAAAGGGGAGAGTaGAGGGTGCAGAGCTACTGG +
Preference number: 3 (lower is better)
Translates to: RSSGPHTMFKEQTSVSTVIQRGE*RVQSYW
Trigger: CCAGTAGCTCTGCACCCTCAACTCTCCCCTTTGAAT...TACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR TCA 72 bp AGTTTTATATATTCAGGAGGGTTCCGAGGGCAGAACTaGGCCACACTGCAATCAGCCTGGCTGCACCTTTGC +
Preference number: 3 (lower is better)
Translates to: SFIYSGGFRGQN*ATLQSAWLHLC
Trigger: GCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGCTCAGTTCTGCCCTCGGAACCCTCCTGAATATATAAAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR GCA 72 bp GAGCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTaGCTCCCTTCATCTCTCAAAGCAACATTGTACAAA +
Preference number: 3 (lower is better)
Translates to: EPHCNQPGCTFA*LPSSLKATLYK
Trigger: TTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR TCA 72 bp TCAACTGTAGGGAACCAGTCATTCAAAGGGGAGAGTTaGGGGTGCAGAGCTACTGGCTTTAACAATGCAGTC +
Preference number: 3 (lower is better)
Translates to: STVGNQSFKGES*GCRATGFNNAV
Trigger: GACTGCATTGTTAAAGCCAGTAGCTCTGCACCCTCAACTCTCCCCTTTGAATGACTGGTTCCCTACAGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR CCA 72 bp CAATGCAGTCTTAAATACCACATCACTTCTGCTGTGTaGCAAAAGCCAGACACTGGCAATGGGAACAAAAGA +
Preference number: 3 (lower is better)
Translates to: QCSLKYHITSAV*QKPDTGNGNKR
Trigger: TCTTTTGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR-3UTR CAA 90 bp GGGAAAGGGAAAACACCCTCTTTAATATCCATGAATAGTGGGGTTACATTTACAAATGCAGGGGTGGCTTaGGGAATAAGGAAAACTGTG +
Preference number: 3 (lower is better)
Translates to: GKGKTPSLISMNSGVTFTNAGVA*GIRKTV
Trigger: CACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATT...TGTAAATGTAACCCCACTATTCATGGATATTAAAGAGGGTGTTTTCCCTTTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR TCA 72 bp AAAGAACCAAGACACACTAAGAAAACACTAGAGCCATaGTGTCCACACAAGAGCAAAGAAGTAAAAGATCCA +
Preference number: 3 (lower is better)
Translates to: KEPRHTKKTLEP*CPHKSKEVKDP
Trigger: TGGATCTTTTACTTCTTTGCTCTTGTGTGGACATCATGGCTCTAGTGTTTTCTTAGTGTGTCTTGGTTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp GAGCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCCTGCTGGGTATTGGCTaGTGCTTCCCCTGTTGGATC +
Preference number: 4 (lower is better)
Translates to: EPHCNQPGCTFACLPSSLLLGIG*CFPCWI
Trigger: GATCCAACAGGGGAAGCAGCAGCCAATACCCAGCAG...GAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp GCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAAGAACGAAAGCTCAGGTaGTCCCGTCCACAAAGAGGG +
Preference number: 4 (lower is better)
Translates to: ATLQSAWLHLCLPPFISQERKLR*SRPQRG
Trigger: CCCTCTTTGTGGACGGGACCACCTGAGCTTTCGTTC...TTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp CACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAAAGCATGCTGCTGCCATTTCTaGAGCCAACTCCCGCTCATC +
Preference number: 4 (lower is better)
Translates to: HCNQPGCTFACLPSSLKACCCHF*SQLPLI
Trigger: GATGAGCGGGAGTTGGCTGCAGAAATGGCAGCAGCA...TGCTTTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp CCACACCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCACTGTCCAGACAGCATTaGGGTTACCAGGGAGCTCAG +
Preference number: 4 (lower is better)
Translates to: PHRSSGPHTMFKEQTSVSLSRQH*GYQGAQ
Trigger: CTGAGCTCCCTGGTAACCCCAATGCTGTCTGGACAG...TGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGGTGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp GCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAAAAGTGTTGGTGGAGATaGCAACAATGCCCTCGGGAC +
Preference number: 4 (lower is better)
Translates to: ATLQSAWLHLCLPPFISQKCWWR*QQCPRD
Trigger: GTCCCGAGGGCATTGTTGCCATCTCCACCAACACTT...TTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp CAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAGAGTAGCTCAGCCATaGGCGACTGGACATAGCCAG +
Preference number: 4 (lower is better)
Translates to: QPGCTFACLPSSLKATLYRVAQP*ATGHSQ
Trigger: CTGGCTATGTCCAGTCGCTCATGGCTGAGCTACTCT...GTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp GCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAATACTCTCAGGGTGGATaGCAAACTTCCTGGGTGTGT +
Preference number: 4 (lower is better)
Translates to: ATLQSAWLHLCLPPFISQYSQGG*QTSWVC
Trigger: ACACACCCAGGAAGTTTGTCATCCACCCTGAGAGTA...TTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp GAGCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCGACACAATTACCCTGTaGCCAATTGTCTGGATCCCA +
Preference number: 4 (lower is better)
Translates to: EPHCNQPGCTFACLPSSLDTITL*PIVWIP
Trigger: TGGGATCCAGACAATTGGTCACAGGGTAATTGTGTC...GAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp CCACACCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACAAGGTTGGAGTGGTaGCCAAGAAGCCAGAGTCAG +
Preference number: 4 (lower is better)
Translates to: PHRSSGPHTMFKEQTSVSTRLEW*PRSQSQ
Trigger: CTGACTCTGGCTTCTTGGGCACCACTCCAACCTTGT...TGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGGTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp TTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTACAGCCTCCTGGCCTTaGATCCGGACCCGGAAGAGT +
Preference number: 4 (lower is better)
Translates to: LGIRKTVFHTEAQGHTLCTASWP*IRTRKS
Trigger: ACTCTTCCGGGTCCGGATGCAAGGCCAGGAGGCTGT...ACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp GCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAAAAGGCTGCCTCGTTTTaGTCCAACTGGACAAGGTCT +
Preference number: 4 (lower is better)
Translates to: ATLQSAWLHLCLPPFISQKAASF*SNWTRS
Trigger: AGACCTTGTCCAGTTGGAGCAAAACGAGGCAGCCTT...TTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp GCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAAGTTGCCAAACTTGTCTaGCCCAGCCACAGTGTCATA +
Preference number: 4 (lower is better)
Translates to: ATLQSAWLHLCLPPFISQVAKLV*PSHSVI
Trigger: TATGACACTGTGGCTGGGGCAGACAAGTTTGGCAAC...TTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp GCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCTGCTCAGACCGCAGGTaGATTTCAACATGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: AGVALGIRKTVFHTEAQGCSDRR*ISTCWK
Trigger: CTTCCAGCATGTTGAAATGCACCTGCGGTCTGAGCA...GCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp GCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAACCAGAGAAGTTGCCATaGATGGCAAAGCTGATGCCA +
Preference number: 4 (lower is better)
Translates to: ATLQSAWLHLCLPPFISQPEKLP*MAKLMP
Trigger: TGGCATCAGCTTTGCCATCCATGGCAACTTCTCTGG...TTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp GGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTTCCCTGGAATGGGGCAATaGCAGCAGGGACCTCTTCCA +
Preference number: 4 (lower is better)
Translates to: GNKENCVPHRSSGPHTMFPGMGQ*QQGPLP
Trigger: TGGAAGAGGTCCCTGCTGCCATTGCCCCATTCCAGG...GAACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp CCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTATCAGTACCCTCCCCTaGAATGGGGCAATGGCAGCA +
Preference number: 4 (lower is better)
Translates to: PKLRATHYVQGADFSVNCISTLP*NGAMAA
Trigger: TGCTGCCATTGCCCCATTCCAGGGGAGGGTACTGAT...ACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp ACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACAAAAGAGGACCTCTGCCTTCTGTaGAGCCCCATTGAGCAAGCC +
Preference number: 4 (lower is better)
Translates to: TSLLLCGKSQTLAMGTKEDLCLL*SPIEQA
Trigger: GGCTTGCTCAATGGGGCTTCACAGAAGGCAGAGGTC...CTCTTTTGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp CCACACCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCACTGGGTATTGGCTGCTaGTTCCCCTGTTGGATCATT +
Preference number: 4 (lower is better)
Translates to: PHRSSGPHTMFKEQTSVSLGIGC*FPCWII
Trigger: AATGATCCAACAGGGGAAGCAGCAGCCAATACCCAG...TGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGGTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp GCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCAGAAGAACATGGACTTaGTCTTATGGGTGGCAGAGC +
Preference number: 4 (lower is better)
Translates to: AGVALGIRKTVFHTEAQGRRTWT*SYGWQS
Trigger: GCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCT...GCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp GCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAACCTAAACGCCATAAGTaGCCGGATAACACCAAATAC +
Preference number: 4 (lower is better)
Translates to: ATLQSAWLHLCLPPFISQPKRHK*PDNTKY
Trigger: GTATTTGGTGTTATCCGGTCACTTATGGCGTTTAGG...TTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp CCACACCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCATTGAGTGGTCTCGGCTaGAAGAAGAATGTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: PHRSSGPHTMFKEQTSVSLSGLG*KKNVSP
Trigger: AGGAGACACATTCTTCTTTCAGCCGAGACCACTCAA...TGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGGTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp ACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACAAAAGAGGCACACCACATCTGCTaGCATCTCTTTCCGCTCCGT +
Preference number: 4 (lower is better)
Translates to: TSLLLCGKSQTLAMGTKEAHHIC*HLFPLR
Trigger: ACGGAGCGGAAAGAGATGTCAGCAGATGTGGTGTGC...CTCTTTTGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp AATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGAGGCCCACTGCCCATTaGCAGCCTTGGGAGCTCCAA +
Preference number: 4 (lower is better)
Translates to: NAVLNTTSLLLCGKSQTLRPTAH*QPWELQ
Trigger: TTGGAGCTCCCAAGGCTGGCAATGGGCAGTGGGCCT...CAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp AATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACAAGAGTGTTCGCTTTGTaGGCCTCCAGGGGAGAGGAA +
Preference number: 4 (lower is better)
Translates to: NTTSLLLCGKSQTLAMGTRVFAL*ASRGEE
Trigger: TTCCTCTCCCCTGGAGGCCCACAAAGCGAACACTCT...TGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp AATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACACCGTCTCCTGGGAATTaGACATCGGATGTCTGGCTG +
Preference number: 4 (lower is better)
Translates to: NTTSLLLCGKSQTLAMGTPSPGN*TSDVWL
Trigger: CAGCCAGACATCCGATGTCCAATTCCCAGGAGACGG...TGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp CCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTGTGGGGTGTCTTCATTaGCCAAATCAGCTATCTGGC +
Preference number: 4 (lower is better)
Translates to: PKLRATHYVQGADFSVNCVGCLH*PNQLSG
Trigger: GCCAGATAGCTGATTTGGCCAATGAAGACACCCCAC...ACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp AAACTAGTTTTATATATTCAGGAGGGTTCCGAGGGCAGAACTGAGCCACACTGCCTTGGACACTTCAGGTaGGGTTCGGTCCAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: KLVLYIQEGSEGRTEPHCLGHFR*GSVQLL
Trigger: GAGGAGCTGGACCGAACCCCACCTGAAGTGTCCAAG...GCAGTGTGGCTCAGTTCTGCCCTCGGAACCCTCCTGAATATATAAAACTAGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR CAA 72 bp GAACTGAGCCACACTGCAATCAGCCTGGCTGCACCTTaGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGT +
Preference number: 4 (lower is better)
Translates to: ELSHTAISLAAP*LASLHLSKQHC
Trigger: ACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGCTCAGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp CCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTAATGGGAAGGCTACTTaGTTGAAGACAGCACCAAGC +
Preference number: 4 (lower is better)
Translates to: PKLRATHYVQGADFSVNCNGKAT*LKTAPS
Trigger: GCTTGGTGCTGTCTTCAATCAAGTAGCCTTCCCATT...ACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp CCACACCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAGGCGACATCCGCTTTTaGCAAAAGTTTCTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: PHRSSGPHTMFKEQTSVSGDIRF*QKFLGE
Trigger: TTCACCAAGAAACTTTTGGCAAAAGCGGATGTCGCC...TGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGGTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp CAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGACACCTCAAGTCCATaGCTTAAGACTCTCAGGGAG +
Preference number: 4 (lower is better)
Translates to: QCRGGFGNKENCVPHRSSDTSSP*LKTLRE
Trigger: CTCCCTGAGAGTCTTAAGGCATGGACTTGAGGTGTC...TGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp TTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTCGTTGGCCAGACTCATaGACACCACATCTGCTGACA +
Preference number: 4 (lower is better)
Translates to: LGIRKTVFHTEAQGHTLCRWPDS*TPHLLT
Trigger: TGTCAGCAGATGTGGTGTGCATGAGTCTGGCCAACG...ACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp GAAATTACACAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACATCACAGAGGCCCACTaGCCATTGCCAGCCTTGGGA +
Preference number: 4 (lower is better)
Translates to: EITQCRGGFGNKENCVPHITEAH*PLPALG
Trigger: TCCCAAGGCTGGCAATGGGCAGTGGGCCTCTGTGAT...GTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTGTGTAATTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp AATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACATGCTGCTTCCCCTGTTaGATCATTGTCTGCCTCCTC +
Preference number: 4 (lower is better)
Translates to: NTTSLLLCGKSQTLAMGTCCFPC*IIVCLL
Trigger: GAGGAGGCAGACAATGATCCAACAGGGGAAGCAGCA...TGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp GCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCATGGACTTGGTCTTATaGGTGGCAGAGCAAACAAAA +
Preference number: 4 (lower is better)
Translates to: AGVALGIRKTVFHTEAQGMDLVL*VAEQTK
Trigger: TTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCAT...GCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp GGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTTCGGCTACATACAGCTGTaGGGTGTCTTCATTGGCCAA +
Preference number: 4 (lower is better)
Translates to: GNKENCVPHRSSGPHTMFGYIQL*GVFIGQ
Trigger: TTGGCCAATGAAGACACCCCACAGCTGTATGTAGCC...GAACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp CCAGTTATTGTTCTAATTAGGCCTCAAGCCTTTCTCCAGAATTATCACTCCCAGCATGGATGGCAAAGCTaGTGCCAGTGGCCCGCTGTA +
Preference number: 4 (lower is better)
Translates to: PVIVLIRPQAFLQNYHSQHGWQS*CQWPAV
Trigger: TACAGCGGGCCACTGGCATCAGCTTTGCCATCCATG...CTGGGAGTGATAATTCTGGAGAAAGGCTTGAGGCCTAATTAGAACAATAACTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp CGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTAGGAAGGCTACTTGATTaGAGACAGCACCAAGCTTCT +
Preference number: 4 (lower is better)
Translates to: RSSGPHTMFKEQTSVSTVGRLLD*RQHQAS
Trigger: AGAAGCTTGGTGCTGTCTTCAATCAAGTAGCCTTCC...TACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp AAACTAGTTTTATATATTCAGGAGGGTTCCGAGGGCAGAACTGAGCCACACTGCATAGACAAGGGACTCTaGGCCTCCAGGGATCAGTGT +
Preference number: 4 (lower is better)
Translates to: KLVLYIQEGSEGRTEPHCIDKGL*ASRDQC
Trigger: ACACTGATCCCTGGAGGCTCAGAGTCCCTTGTCTAT...GCAGTGTGGCTCAGTTCTGCCCTCGGAACCCTCCTGAATATATAAAACTAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp CGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTATCCACTGGAGTCTTGTaGAGAAACTCCAACTTCTCC +
Preference number: 4 (lower is better)
Translates to: RSSGPHTMFKEQTSVSTVSTGVL*RNSNFS
Trigger: GGAGAAGTTGGAGTTTCTGCACAAGACTCCAGTGGA...TACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp CGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTATCAGAGACGTTCTTCTaGTTGTTGGGTTCCATGGAG +
Preference number: 4 (lower is better)
Translates to: RSSGPHTMFKEQTSVSTVSETFF*LLGSME
Trigger: CTCCATGGAACCCAACAAGCAGAAGAACGTCTCTGA...TACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp CCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTCTTCTTCTAGAGGCATaGCAGACGAAAACTCAGGTT +
Preference number: 4 (lower is better)
Translates to: PKLRATHYVQGADFSVNCLLLEA*QTKTQV
Trigger: AACCTGAGTTTTCGTCTGCCATGCCTCTAGAAGAAG...ACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp CCACACCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAAAATCCTCAAAGTGTTaGTGGAGATGGCAACAATGC +
Preference number: 4 (lower is better)
Translates to: PHRSSGPHTMFKEQTSVSKSSKC*WRWQQC
Trigger: GCATTGTTGCCATCTCCACCAACACTTTGAGGATTT...TGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGGTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp ACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACAAAAGAGGATAACAATCCGGCCTaGGTCACTGCCAACTACAAT +
Preference number: 4 (lower is better)
Translates to: TSLLLCGKSQTLAMGTKEDNNPA*VTANYN
Trigger: ATTGTAGTTGGCAGTGACTCAGGCCGGATTGTTATC...CTCTTTTGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp AAACTAGTTTTATATATTCAGGAGGGTTCCGAGGGCAGAACTGAGCCACACTGCTCCACTTGGACCATCTaGCCCTCCAGGAACTGTAAT +
Preference number: 4 (lower is better)
Translates to: KLVLYIQEGSEGRTEPHCSTWTI*PSRNCN
Trigger: ATTACAGTTCCTGGAGGGTCAGATGGTCCAAGTGGA...GCAGTGTGGCTCAGTTCTGCCCTCGGAACCCTCCTGAATATATAAAACTAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp CAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCACAGTATCAAAATACTTaGGGCGGATCTCGGTTACCA +
Preference number: 4 (lower is better)
Translates to: QCRGGFGNKENCVPHRSSQYQNT*GGSRLP
Trigger: TGGTAACCGAGATCCGCCTCAAGTATTTTGATACTG...TGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp CAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCATTCATTGAGGAATGCTaGTGCCATTTCTGCAGCCAA +
Preference number: 4 (lower is better)
Translates to: QCRGGFGNKENCVPHRSSFIEEC*CHFCSQ
Trigger: TTGGCTGCAGAAATGGCAGCAGCATTCCTCAATGAA...TGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp AATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACATGGACATCGGATGTCTaGCTGGTCACCAAAGTTCTT +
Preference number: 4 (lower is better)
Translates to: NTTSLLLCGKSQTLAMGTWTSDV*LVTKVL
Trigger: AAGAACTTTGGTGACCAGCCAGACATCCGATGTCCA...TGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp TGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGGGAGCAGGACAAGGTTaGAGTGGTGCCCAAGAAGCC +
Preference number: 4 (lower is better)
Translates to: CLPPFISQSNIVQNCIYRGAGQG*SGAQEA
Trigger: GGCTTCTTGGGCACCACTCCAACCTTGTCCTGCTCC...CCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp CGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTAGGGTGTGTACTGCAATaGGAAGGCTACTTGATTGAA +
Preference number: 4 (lower is better)
Translates to: RSSGPHTMFKEQTSVSTVGCVLQ*EGYLIE
Trigger: TTCAATCAAGTAGCCTTCCCATTGCAGTACACACCC...TACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp TTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTATCGTTGGTGTTAGGTaGGAGCCTCACCACACAAAT +
Preference number: 4 (lower is better)
Translates to: LGIRKTVFHTEAQGHTLCIVGVR*EPHHTN
Trigger: ATTTGTGTGGTGAGGCTCCCACCTAACACCAACGAT...ACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp AATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACATCACAATCGTTTTCTTaGCGGGAGTCTTCCACTCAT +
Preference number: 4 (lower is better)
Translates to: NTTSLLLCGKSQTLAMGTSQSFS*RESSTH
Trigger: ATGAGTGGAAGACTCCCGGCAAGAAAACGATTGTGA...TGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp ACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACAAAAGAGGTTTTCATTGAGGAATaGTGCTGCCATTTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: TSLLLCGKSQTLAMGTKEVFIEE*CCHFCS
Trigger: GCTGCAGAAATGGCAGCAGCATTCCTCAATGAAAAC...CTCTTTTGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp AAACTAGTTTTATATATTCAGGAGGGTTCCGAGGGCAGAACTGAGCCACACTGCTCACCACACAAATGTTaGCAAACTTGTCTGCCCCAG +
Preference number: 4 (lower is better)
Translates to: KLVLYIQEGSEGRTEPHCSPHKC*QTCLPQ
Trigger: CTGGGGCAGACAAGTTTGGCAACATTTGTGTGGTGA...GCAGTGTGGCTCAGTTCTGCCCTCGGAACCCTCCTGAATATATAAAACTAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp ATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCAAAGAACCAAGACACCCACAAAGAGGGGGATaGTCAGACCGCAGGTGCATT +
Preference number: 4 (lower is better)
Translates to: IYMVSELMFYLHSKEPRHPQRGG*SDRRCI
Trigger: AATGCACCTGCGGTCTGAGCATCCCCCTCTTTGTGG...GTGTCTTGGTTCTTTGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp GAAATTACACAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACGGTCATTCCGTCTCCTaGGAATTGGACATCGGATGT +
Preference number: 4 (lower is better)
Translates to: EITQCRGGFGNKENCVPHGHSVS*ELDIGC
Trigger: ACATCCGATGTCCAATTCCCAGGAGACGGAATGACC...GTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTGTGTAATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp CCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTACTTGGTCTTATGGGTaGCAGAGCAAACAAAAATCA +
Preference number: 4 (lower is better)
Translates to: PKLRATHYVQGADFSVNCTWSYG*QSKQKS
Trigger: TGATTTTTGTTTGCTCTGCCACCCATAAGACCAAGT...ACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp AAACTAGTTTTATATATTCAGGAGGGTTCCGAGGGCAGAACTGAGCCACACTGCATCACCACTTGTCGCTaGTTCACTGCACACTTCACA +
Preference number: 4 (lower is better)
Translates to: KLVLYIQEGSEGRTEPHCITTCR*FTAHFT
Trigger: TGTGAAGTGTGCAGTGAACCAGCGACAAGTGGTGAT...GCAGTGTGGCTCAGTTCTGCCCTCGGAACCCTCCTGAATATATAAAACTAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp AGCAAAGAAGTAAAAGATCCAGTTATTGTTCTAATTAGGCCTCAAGCCTTTCTCCTCCAGGGGGCACGTTaGCCAGACTCATGCACACCA +
Preference number: 4 (lower is better)
Translates to: SKEVKDPVIVLIRPQAFLLQGAR*PDSCTP
Trigger: TGGTGTGCATGAGTCTGGCCAACGTGCCCCCTGGAG...GAGAAAGGCTTGAGGCCTAATTAGAACAATAACTGGATCTTTTACTTCTTTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp CAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCATGGGAGCTCCAAAAATaGATTCTGGGAGGTTTTCAT +
Preference number: 4 (lower is better)
Translates to: QCRGGFGNKENCVPHRSSWELQK*ILGGFH
Trigger: ATGAAAACCTCCCAGAATCCATTTTTGGAGCTCCCA...TGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
3UTR CAA 72 bp GACAAGAGCCAGAAATTACACAATGCAGGGGTGGCTTaGGGAATAAGGAAAACTGTGTTCCACACCGAAGCT +
Preference number: 4 (lower is better)
Translates to: DKSQKLHNAGVA*GIRKTVFHTEA
Trigger: AGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTGTGTAATTTCTGGCTCTTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp TGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGCATAAGACAGAGGGGTaGGATGGAAGCGAGACTGGT +
Preference number: 4 (lower is better)
Translates to: CLPPFISQSNIVQNCIYRHKTEG*DGSETG
Trigger: ACCAGTCTCGCTTCCATCTCACCCCTCTGTCTTATG...CCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp TGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGTGGGCTGGGAGAGCCTaGATACTCAGAGGCTGTAAA +
Preference number: 4 (lower is better)
Translates to: CLPPFISQSNIVQNCIYRWAGRA*ILRGCK
Trigger: TTTACAGCCTCTGAGTATGCAGGCTCTCCCAGCCCA...CCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp ATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCAAAGAACCAAGACACTGGAGATGGCAACAATaGCCTCGGGACACTGTTCAG +
Preference number: 4 (lower is better)
Translates to: IYMVSELMFYLHSKEPRHWRWQQ*PRDTVQ
Trigger: CTGAACAGTGTCCCGAGGGCATTGTTGCCATCTCCA...GTGTCTTGGTTCTTTGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp CCACACCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCATCCCAGATATGTAATTaGCAATATGCTTATTCTCAC +
Preference number: 4 (lower is better)
Translates to: PHRSSGPHTMFKEQTSVSSQICN*QYAYSH
Trigger: GTGAGAATAAGCATATTGCCAATTACATATCTGGGA...TGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGGTGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp AATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGGGCTTTGTTTCCAGTaGGATCTTCATCCACCTCAT +
Preference number: 4 (lower is better)
Translates to: NAVLNTTSLLLCGKSQTLGLCFQ*DLHPPH
Trigger: ATGAGGTGGATGAAGATCCCACTGGAAACAAAGCCC...CAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp ATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCAAAGAACCAAGACACCTCCAGGGATCAGTGTaGTCTTCTGTAGCGACAGCA +
Preference number: 4 (lower is better)
Translates to: IYMVSELMFYLHSKEPRHLQGSV*SSVATA
Trigger: TGCTGTCGCTACAGAAGACCACACTGATCCCTGGAG...GTGTCTTGGTTCTTTGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp AATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACATCACGAAAGACACAATaGTGTAGGCATCAAACTCAT +
Preference number: 4 (lower is better)
Translates to: NTTSLLLCGKSQTLAMGTSRKTQ*CRHQTH
Trigger: ATGAGTTTGATGCCTACATCATTGTGTCTTTCGTGA...TGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp TTTGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGTCCTCGTGAGACGTaGAAGGGACAAGGATGCCAA +
Preference number: 4 (lower is better)
Translates to: FACLPSSLKATLYKTVFTGPRET*KGQGCQ
Trigger: TTGGCATCCTTGTCCCTTTCACGTCTCACGAGGACC...TGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp TTTAACAATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGCCATCTGGATACACCTaGACCAGTGCATCATCTCCT +
Preference number: 4 (lower is better)
Translates to: FNNAVLNTTSLLLCGKSQPSGYT*TSASSP
Trigger: AGGAGATGATGCACTGGTGCAGGTGTATCCAGATGG...CTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATTGTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp AATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGTCCATGGAGTTGAACTaGTCACAAAGGTCTCCATCA +
Preference number: 4 (lower is better)
Translates to: NAVLNTTSLLLCGKSQTLSMELN*SQRSPS
Trigger: TGATGGAGACCTTTGTGAGCAGTTCAACTCCATGGA...CAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp TGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGTCCACAGCTAAGAACTaGCCAGGAACAATACGGCGA +
Preference number: 4 (lower is better)
Translates to: CLPPFISQSNIVQNCIYRSTAKN*PGTIRR
Trigger: TCGCCGTATTGTTCCTGGCCAGTTCTTAGCTGTGGA...CCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp TGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGGCCCATTGCCAGCCTTaGGAGCTCCAAAAATGGATT +
Preference number: 4 (lower is better)
Translates to: CLPPFISQSNIVQNCIYRAHCQP*ELQKWI
Trigger: AATCCATTTTTGGAGCTCCCAAGGCTGGCAATGGGC...CCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp AATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGTGCATTTCAACATGCTaGAAGAAGTCATGGTCCTCG +
Preference number: 4 (lower is better)
Translates to: NAVLNTTSLLLCGKSQTLCISTC*KKSWSS
Trigger: CGAGGACCATGACTTCTTCCAGCATGTTGAAATGCA...CAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp GGGAAAGGGAAAACACCCTCTTTAATATCCATGAATAGTGGGGTTACATTTACATGGGTTCCATGGAGTTaGACTGCTCACAAAGGTCTC +
Preference number: 4 (lower is better)
Translates to: GKGKTPSLISMNSGVTFTWVPWS*TAHKGL
Trigger: GAGACCTTTGTGAGCAGTTCAACTCCATGGAACCCA...TGTAAATGTAACCCCACTATTCATGGATATTAAAGAGGGTGTTTTCCCTTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp ACTGGCTTTAACAATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAATCCGGCCTGAGTCACTaGCAACTACAATGTAGTCTT +
Preference number: 4 (lower is better)
Translates to: TGFNNAVLNTTSLLLCGKSGLSH*QLQCSL
Trigger: AAGACTACATTGTAGTTGGCAGTGACTCAGGCCGGA...TTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATTGTTAAAGCCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp GGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTTCTTTCTGCTTCTCAATTaGACTAATCATAACAGCTCT +
Preference number: 4 (lower is better)
Translates to: GNKENCVPHRSSGPHTMFFLLLN*TNHNSS
Trigger: AGAGCTGTTATGATTAGTGCAATTGAGAAGCAGAAA...GAACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp AATAGTGGGGTTACATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCAAATGGTAAGTCGGGCTaGAGCGTCTCTGTTCAAGAT +
Preference number: 4 (lower is better)
Translates to: NSGVTFTWSVNSCSISTANGKSG*SVSVQD
Trigger: ATCTTGAACAGAGACGCTGCAGCCCGACTTACCATT...TGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAATGTAACCCCACTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp ATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCAAAGAACCAAGACACAAAGTAAGTGTCTGCTaGGTATTGGCTGCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: IYMVSELMFYLHSKEPRHKVSVC*VLAAAS
Trigger: GGAAGCAGCAGCCAATACCCAGCAGACACTTACTTT...GTGTCTTGGTTCTTTGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp TTTAACAATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGTCAGTATCAAGTCCTTaGCAACACCCACCAGCACAT +
Preference number: 4 (lower is better)
Translates to: FNNAVLNTTSLLLCGKSQSVSSP*QHPPAH
Trigger: ATGTGCTGGTGGGTGTTGCCAAGGACTTGATACTGA...CTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATTGTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp TTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTCAGATGAAACTTTCTTaGACATCAGACACAATTACC +
Preference number: 4 (lower is better)
Translates to: LGIRKTVFHTEAQGHTLCQMKLS*TSDTIT
Trigger: GGTAATTGTGTCTGATGTCCAAGAAAGTTTCATCTG...ACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp GCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGAAAACCTGGGAGGTTTTCATTaGGGAATGCTGCTGCCATTT +
Preference number: 4 (lower is better)
Translates to: ASLHLSKQHCTKLYLQENLGGFH*GMLLPF
Trigger: AAATGGCAGCAGCATTCCTCAATGAAAACCTCCCAG...GTTTTCCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp GGGAAAGGGAAAACACCCTCTTTAATATCCATGAATAGTGGGGTTACATTTACAAACTCATCTTCAATGTaGCGACGGACTGTCCAGACA +
Preference number: 4 (lower is better)
Translates to: GKGKTPSLISMNSGVTFTNSSSM*RRTVQT
Trigger: TGTCTGGACAGTCCGTCGGCACATTGAAGATGAGTT...TGTAAATGTAACCCCACTATTCATGGATATTAAAGAGGGTGTTTTCCCTTTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp ACTGGCTTTAACAATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGGTGCATTTCAACATaGTGGAAGAAGTCATGGTCC +
Preference number: 4 (lower is better)
Translates to: TGFNNAVLNTTSLLLCGKRCIST*WKKSWS
Trigger: GGACCATGACTTCTTCCAGCATGTTGAAATGCACCT...TTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATTGTTAAAGCCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp TGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGCCAGAAAGAAGAACATaGACTTGGTCTTATGGGTGG +
Preference number: 4 (lower is better)
Translates to: CLPPFISQSNIVQNCIYRPERRT*TWSYGW
Trigger: CCACCCATAAGACCAAGTCCATGTTCTTCTTTCTGG...CCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp ACTGGCTTTAACAATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAATCTTCACCAGTGTTaGAGAACCTACACACTGCCA +
Preference number: 4 (lower is better)
Translates to: TGFNNAVLNTTSLLLCGKNLHQC*RTYTLP
Trigger: TGGCAGTGTGTAGGTTCTCCAACACTGGTGAAGATT...TTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATTGTTAAAGCCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp TTTAACAATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGCAAATACTTCAACAGTaGGGAGGGTATGTACTTTGC +
Preference number: 4 (lower is better)
Translates to: FNNAVLNTTSLLLCGKSQQILQQ*GGYVLC
Trigger: GCAAAGTACATACCCTCCTCACTGTTGAAGTATTTG...CTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATTGTTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp GAAATTACACAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACCAAAGTTCTTGTAGGTaGTATAATTCTCAGAGCAGA +
Preference number: 4 (lower is better)
Translates to: EITQCRGGFGNKENCVPHQSSCR*YNSQSR
Trigger: TCTGCTCTGAGAATTATATCACCTACAAGAACTTTG...GTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTGTGTAATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp ATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCAAAGAACCAAGACACATGATTTCCAAATTCTaGCGCCACAAAAAGGAAGCC +
Preference number: 4 (lower is better)
Translates to: IYMVSELMFYLHSKEPRHMISKF*RHKKEA
Trigger: GGCTTCCTTTTTGTGGCGTCAGAATTTGGAAATCAT...GTGTCTTGGTTCTTTGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp AGCAAAGAAGTAAAAGATCCAGTTATTGTTCTAATTAGGCCTCAAGCCTTTCTCATTGAGGAATGCTGCTaGCATTTCTGCAGCCAACTC +
Preference number: 4 (lower is better)
Translates to: SKEVKDPVIVLIRPQAFLIEECC*HFCSQL
Trigger: GAGTTGGCTGCAGAAATGGCAGCAGCATTCCTCAAT...GAGAAAGGCTTGAGGCCTAATTAGAACAATAACTGGATCTTTTACTTCTTTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp TGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGCAATTTCCTGTTGCTTaGTTCCAGAGAAGTTGCCAT +
Preference number: 4 (lower is better)
Translates to: CLPPFISQSNIVQNCIYRQFPVA*FQRSCH
Trigger: ATGGCAACTTCTCTGGAACCAAGCAACAGGAAATTG...CCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp CCAGTTATTGTTCTAATTAGGCCTCAAGCCTTTCTCCAGAATTATCACTCCCAGGCAAAGATAATGAGCTaGTTCTCGTTACGCTTGTAT +
Preference number: 4 (lower is better)
Translates to: PVIVLIRPQAFLQNYHSQAKIMS*FSLRLY
Trigger: ATACAAGCGTAACGAGAACCAGCTCATTATCTTTGC...CTGGGAGTGATAATTCTGGAGAAAGGCTTGAGGCCTAATTAGAACAATAACTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CCA 90 bp TTTAACAATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGTTCCTCCAGATAAAGTaGTATAGACAAGGGACTCTG +
Preference number: 4 (lower is better)
Translates to: FNNAVLNTTSLLLCGKSQFLQIK*YRQGTL
Trigger: CAGAGTCCCTTGTCTATACCACTTTATCTGGAGGAA...CTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATTGTTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp GGGAAAGGGAAAACACCCTCTTTAATATCCATGAATAGTGGGGTTACATTTACATGTATCGAACCCAGATaGAACTTTCTTGGACATCAG +
Preference number: 4 (lower is better)
Translates to: GKGKTPSLISMNSGVTFTCIEPR*NFLGHQ
Trigger: CTGATGTCCAAGAAAGTTTCATCTGGGTTCGATACA...TGTAAATGTAACCCCACTATTCATGGATATTAAAGAGGGTGTTTTCCCTTTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp TTTGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACATTAAAGATATCTCCCTaGTCCGTTTGGGCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: FACLPSSLKATLYKTVFTLKISP*SVWARK
Trigger: CTTTCTGGCCCAAACGGAGCAGGGAGATATCTTTAA...TGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp GGGAAAGGGAAAACACCCTCTTTAATATCCATGAATAGTGGGGTTACATTTACAACAACAATTTCCTGTTaGTTGGTTCCAGAGAAGTTG +
Preference number: 4 (lower is better)
Translates to: GKGKTPSLISMNSGVTFTTTISC*LVPEKL
Trigger: CAACTTCTCTGGAACCAAGCAACAGGAAATTGTTGT...TGTAAATGTAACCCCACTATTCATGGATATTAAAGAGGGTGTTTTCCCTTTCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR GCA 90 bp AGCAAAGAAGTAAAAGATCCAGTTATTGTTCTAATTAGGCCTCAAGCCTTTCTCTTGTCGCTGGTTCACTaGACACTTCACAATCGTTTT +
Preference number: 4 (lower is better)
Translates to: SKEVKDPVIVLIRPQAFLLSLVH*TLHNRF
Trigger: AAAACGATTGTGAAGTGTGCAGTGAACCAGCGACAA...GAGAAAGGCTTGAGGCCTAATTAGAACAATAACTGGATCTTTTACTTCTTTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR TCA 90 bp TTTGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACACTCAAACATATTCTTTaGTGGCTGGTATTCCAAGAT +
Preference number: 4 (lower is better)
Translates to: FACLPSSLKATLYKTVFTLKHIL*WLVFQD
Trigger: ATCTTGGAATACCAGCCATCAAAGAATATGTTTGAG...TGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp GCCCCACAGCCAGGAACCGAGATCGCTGTTCTCCAGGGGGCACGTTaGCCAGACTCATGCACACCACATCTGCTGACATCTCTTTCCGCT +
Preference number: 5 (lower is better)
Translates to: APQPGTEIAVLQGAR*PDSCTPHLLTSLSA
Trigger: AGCGGAAAGAGATGTCAGCAGATGTGGTGTGCATGAGTCTGGCCAACGTGCCCCCTGGAGAACAGCGATCTCGGTTCCTGGCTGTGGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp GGAACCGAGATCGCTGTTCTCCAGGGGGCACGTTGGCCAGACTCATaGACACCACATCTGCTGACATCTCTTTCCGCTCCGTGTACTCAT +
Preference number: 5 (lower is better)
Translates to: GTEIAVLQGARWPDS*TPHLLTSLSAPCTH
Trigger: ATGAGTACACGGAGCGGAAAGAGATGTCAGCAGATGTGGTGTGCATGAGTCTGGCCAACGTGCCCCCTGGAGAACAGCGATCTCGGTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GAGCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCCTGCTGCTTCCCCTGTaGGATCATTGTCTGCCTCCT +
Preference number: 5 (lower is better)
Translates to: EPHCNQPGCTFACLPSSLLLLPL*DHCLPP
Trigger: AGGAGGCAGACAATGATCCAACAGGGGAAGCAGCAG...GAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp GTATTCCCCTGGATAGGGTTCATCACCCGAATCACAGAGGCCCACTaGCCATTGCCAGCCTTGGGAGCTCCAAAAATGGATTCTGGGAGG +
Preference number: 5 (lower is better)
Translates to: VFPWIGFITRITEAH*PLPALGAPKMDSGR
Trigger: CCTCCCAGAATCCATTTTTGGAGCTCCCAAGGCTGGCAATGGGCAGTGGGCCTCTGTGATTCGGGTGATGAACCCTATCCAGGGGAATAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp GGTGTTAGGTGGGAGCCTCACCACACAAATGTTGCCAAACTTGTCTaGCCCAGCCACAGTGTCATAGTCGAGAAGGCTGGCTGTGGTGAC +
Preference number: 5 (lower is better)
Translates to: GVRWEPHHTNVAKLV*PSHSVIVEKAGCGD
Trigger: GTCACCACAGCCAGCCTTCTCGACTATGACACTGTGGCTGGGGCAGACAAGTTTGGCAACATTTGTGTGGTGAGGCTCCCACCTAACACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp AAAGCTTCCCGACACCAATCAGTACCCTCCCCTGGAATGGGGCAATaGCAGCAGGGACCTCTTCCACTGGAGTCTTGTGCAGAAACTCCA +
Preference number: 5 (lower is better)
Translates to: KASRHQSVPSPGMGQ*QQGPLPLESCAETP
Trigger: TGGAGTTTCTGCACAAGACTCCAGTGGAAGAGGTCCCTGCTGCCATTGCCCCATTCCAGGGGAGGGTACTGATTGGTGTCGGGAAGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp GGCATAGCGGGTCCTAATGTCCTCAAGCTTCTTGGACACTTCAGGTaGGGTTCGGTCCAGCTCCTCAGAGACGTTCTTCTGCTTGTTGGG +
Preference number: 5 (lower is better)
Translates to: GIAGPNVLKLLGHFR*GSVQLLRDVLLLVG
Trigger: CCCAACAAGCAGAAGAACGTCTCTGAGGAGCTGGACCGAACCCCACCTGAAGTGTCCAAGAAGCTTGAGGACATTAGGACCCGCTATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp CAGCTCTCCCCCAGTCAGGGCGATCACCACTTGTCGCTGGTTCACTaGACACTTCACAATCGTTTTCTTGCCGGGAGTCTTCCACTCATT +
Preference number: 5 (lower is better)
Translates to: QLSPSQGDHHLSLVH*TLHNRFLAGSLPLI
Trigger: AATGAGTGGAAGACTCCCGGCAAGAAAACGATTGTGAAGTGTGCAGTGAACCAGCGACAAGTGGTGATCGCCCTGACTGGGGGAGAGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp GATGGCAACAATGCCCTCGGGACACTGTTCAGAGGCAAAGCCCGATaGAAATTCCAGGGTCTCATAAGACAGAGGGGTGAGATGGAAGCG +
Preference number: 5 (lower is better)
Translates to: DGNNALGTLFRGKAR*KFQGLIRQRGEMEA
Trigger: CGCTTCCATCTCACCCCTCTGTCTTATGAGACCCTGGAATTTGCATCGGGCTTTGCCTCTGAACAGTGTCCCGAGGGCATTGTTGCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp GCTGCCTCGTTTTGCTCCAACTGGACAAGGTCTAGTGTATTCCCCTaGATAGGGTTCATCACCCGAATCACAGAGGCCCACTGCCCATTG +
Preference number: 5 (lower is better)
Translates to: AASFCSNWTRSSVFP*IGFITRITEAHCPL
Trigger: CAATGGGCAGTGGGCCTCTGTGATTCGGGTGATGAACCCTATCCAGGGGAATACACTAGACCTTGTCCAGTTGGAGCAAAACGAGGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CCACACCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCATCCGTCTCCTGGGAATaGGACATCGGATGTCTGGCT +
Preference number: 5 (lower is better)
Translates to: PHRSSGPHTMFKEQTSVSSVSWE*DIGCLA
Trigger: AGCCAGACATCCGATGTCCAATTCCCAGGAGACGGA...TGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGGTGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTAGGAGCAGGACAAGGTaGGAGTGGTGCCCAAGAAGC +
Preference number: 5 (lower is better)
Translates to: PKLRATHYVQGADFSVNCRSRTR*EWCPRS
Trigger: GCTTCTTGGGCACCACTCCAACCTTGTCCTGCTCCT...ACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 90 bp AGGCAAAGCCCGATGCAAATTCCAGGGTCTCATAAGACAGAGGGGTaGGATGGAAGCGAGACTGGTAAGAGTAGCTCAGCCATGAGCGAC +
Preference number: 5 (lower is better)
Translates to: RQSPMQIPGSHKTEG*DGSETGKSSSAMSD
Trigger: GTCGCTCATGGCTGAGCTACTCTTACCAGTCTCGCTTCCATCTCACCCCTCTGTCTTATGAGACCCTGGAATTTGCATCGGGCTTTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp CCCATTTCCACAATACATAGAGACTCAGGCTGGGCTGGGAGAGCCTaGATACTCAGAGGCTGTAAACAGTCTGATGGGTCGAGGGAGATG +
Preference number: 5 (lower is better)
Translates to: PISTIHRDSGWAGRA*ILRGCKQSDGSREM
Trigger: CATCTCCCTCGACCCATCAGACTGTTTACAGCCTCTGAGTATGCAGGCTCTCCCAGCCCAGCCTGAGTCTCTATGTATTGTGGAAATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp CTTCTCCCCGTTGTTCACAAGCTTGTACGTATACACAAAGCCCCCTaGCACAGATCGAGGGCTCAGTATCAAGTCCTTGGCAACACCCAC +
Preference number: 5 (lower is better)
Translates to: LLPVVHKLVRIHKAP*HRSRAQYQVLGNTH
Trigger: GTGGGTGTTGCCAAGGACTTGATACTGAGCCCTCGATCTGTGGCAGGGGGCTTTGTGTATACGTACAAGCTTGTGAACAACGGGGAGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp GACACTTCAGGTGGGGTTCGGTCCAGCTCCTCAGAGACGTTCTTCTaGTTGTTGGGTTCCATGGAGTTGAACTGCTCACAAAGGTCTCCA +
Preference number: 5 (lower is better)
Translates to: DTSGGVRSSSSETFF*LLGSMELNCSQRSP
Trigger: TGGAGACCTTTGTGAGCAGTTCAACTCCATGGAACCCAACAAGCAGAAGAACGTCTCTGAGGAGCTGGACCGAACCCCACCTGAAGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp GCACCAGTGCATCATCTCCTAACAAGGAGCAGGACAAGGTTGGAGTaGTGCCCAAGAAGCCAGAGTCAGTCACTTCTTCCACAGTCTCTC +
Preference number: 5 (lower is better)
Translates to: APVHHLLTRSRTRLE*CPRSQSQSLLPQSL
Trigger: GAGAGACTGTGGAAGAAGTGACTGACTCTGGCTTCTTGGGCACCACTCCAACCTTGTCCTGCTCCTTGTTAGGAGATGATGCACTGGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp ACACAAAGCCCCCTGCCACAGATCGAGGGCTCAGTATCAAGTCCTTaGCAACACCCACCAGCACATACCAATCTTCACCAGTGTTGGAGA +
Preference number: 5 (lower is better)
Translates to: TQSPLPQIEGSVSSP*QHPPAHTNLHQCWR
Trigger: TCTCCAACACTGGTGAAGATTGGTATGTGCTGGTGGGTGTTGCCAAGGACTTGATACTGAGCCCTCGATCTGTGGCAGGGGGCTTTGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp AAACTAGTTTTATATATTCAGGAGGGTTCCGAGGGCAGAACTGAGCCACACTGCTCTCCAGGGGGCACGTaGGCCAGACTCATGCACACC +
Preference number: 5 (lower is better)
Translates to: KLVLYIQEGSEGRTEPHCSPGGT*ARLMHT
Trigger: GGTGTGCATGAGTCTGGCCAACGTGCCCCCTGGAGA...GCAGTGTGGCTCAGTTCTGCCCTCGGAACCCTCCTGAATATATAAAACTAGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAAAGCACTCACCCAGCTCATCTaGTTTCTCAGTCCCACCCAT +
Preference number: 5 (lower is better)
Translates to: HCNQPGCTFACLPSSLKALTQLI*FLSPTH
Trigger: ATGGGTGGGACTGAGAAACAAGATGAGCTGGGTGAG...TGCTTTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAAAGCATGCCCATTGCCAGCCTaGGGAGCTCCAAAAATGGAT +
Preference number: 5 (lower is better)
Translates to: HCNQPGCTFACLPSSLKACPLPA*GAPKMD
Trigger: ATCCATTTTTGGAGCTCCCAAGGCTGGCAATGGGCA...TGCTTTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 90 bp CAAGCAAACATAGGATTCTCAAATCCCACGTCTACGCCAACCACGTaGTACACCAGAGTGTTCGCTTTGTGGGCCTCCAGGGGAGAGGAA +
Preference number: 5 (lower is better)
Translates to: QANIGFSNPTSTPTT*YTRVFALWASRGEE
Trigger: TTCCTCTCCCCTGGAGGCCCACAAAGCGAACACTCTGGTGTATCACGTGGTTGGCGTAGACGTGGGATTTGAGAATCCTATGTTTGCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 90 bp TGCCAGCCTTGGGAGCTCCAAAAATGGATTCTGGGAGGTTTTCATTaGGGAATGCTGCTGCCATTTCTGCAGCCAACTCCCGCTCATCCT +
Preference number: 5 (lower is better)
Translates to: CQPWELQKWILGGFH*GMLLPFLQPTPAHP
Trigger: AGGATGAGCGGGAGTTGGCTGCAGAAATGGCAGCAGCATTCCTCAATGAAAACCTCCCAGAATCCATTTTTGGAGCTCCCAAGGCTGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp AATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCAATGGGAACACAGGGCGATCACCACTaGTCGCTGGTTCACTGCACA +
Preference number: 5 (lower is better)
Translates to: NTTSLLLCGKSQTLAMGTQGDHH*SLVHCT
Trigger: TGTGCAGTGAACCAGCGACAAGTGGTGATCGCCCTG...TGTTCCCATTGCCAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GAAATTACACAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACAACAGCCTCCTGGCCTaGCATCCGGACCCGGAAGAG +
Preference number: 5 (lower is better)
Translates to: EITQCRGGFGNKENCVPHNSLLA*HPDPEE
Trigger: CTCTTCCGGGTCCGGATGCAAGGCCAGGAGGCTGTT...GTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTGTGTAATTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp GTGTTGGAGAACCTACACACTGCCACACTAAAGGCTGCCTCGTTTTaGTCCAACTGGACAAGGTCTAGTGTATTCCCCTGGATAGGGTTC +
Preference number: 5 (lower is better)
Translates to: VLENLHTATLKAASF*SNWTRSSVFPWIGF
Trigger: GAACCCTATCCAGGGGAATACACTAGACCTTGTCCAGTTGGAGCAAAACGAGGCAGCCTTTAGTGTGGCAGTGTGTAGGTTCTCCAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp CATCAAACTCATCTTCAATGTGCCGACGGACTGTCCAGACAGCATTaGGGTTACCAGGGAGCTCAGAAACAGCCATTTCCGACACCTCAA +
Preference number: 5 (lower is better)
Translates to: HQTHLQCADGLSRQH*GYQGAQKQPFPTPQ
Trigger: TTGAGGTGTCGGAAATGGCTGTTTCTGAGCTCCCTGGTAACCCCAATGCTGTCTGGACAGTCCGTCGGCACATTGAAGATGAGTTTGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp ATAAAGTGGTATAGACAAGGGACTCTGAGCCTCCAGGGATCAGTGTaGTCTTCTGTAGCGACAGCACGGTCTCTCCAACGTGGTAGTTCA +
Preference number: 5 (lower is better)
Translates to: IKWYRQGTLSLQGSV*SSVATARSLQRGSS
Trigger: TGAACTACCACGTTGGAGAGACCGTGCTGTCGCTACAGAAGACCACACTGATCCCTGGAGGCTCAGAGTCCCTTGTCTATACCACTTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTTCAGGAGGGTATGTACTTaGCCAGTGTTAGGGTCTGGG +
Preference number: 5 (lower is better)
Translates to: GNKENCVPHRSSGPHTMFRRVCT*PVLGSG
Trigger: CCCAGACCCTAACACTGGCAAAGTACATACCCTCCT...GAACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAAAAGGCTGCCTCGTTTaGCTCCAACTGGACAAGGTC +
Preference number: 5 (lower is better)
Translates to: QCRGGFGNKENCVPHRSSKGCLV*LQLDKV
Trigger: GACCTTGTCCAGTTGGAGCAAAACGAGGCAGCCTTT...TGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GCCACACTGCAATCAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAATGGTTCTCGTTACGCTaGTATCGAACCCAGATGAAA +
Preference number: 5 (lower is better)
Translates to: ATLQSAWLHLCLPPFISQWFSLR*YRTQMK
Trigger: TTTCATCTGGGTTCGATACAAGCGTAACGAGAACCA...TTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTGATTGCAGTGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTACAAATGTTGCCAAACTaGTCTGCCCCAGCCACAGTG +
Preference number: 5 (lower is better)
Translates to: RSSGPHTMFKEQTSVSTVQMLPN*SAPATV
Trigger: CACTGTGGCTGGGGCAGACAAGTTTGGCAACATTTG...TACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp CCCTGCTCCGTTTGGGCCAGAAAGAAGAACATGGACTTGGTCTTATaGGTGGCAGAGCAAACAAAAATCATTCCTCGTTCAGGGTCATCC +
Preference number: 5 (lower is better)
Translates to: PCSVWARKKNMDLVL*VAEQTKIIPRSGSS
Trigger: GGATGACCCTGAACGAGGAATGATTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTCTGGCCCAAACGGAGCAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp TGTTTCTCAGTCCCACCCATTTCCACAATACATAGAGACTCAGGCTaGGCTGGGAGAGCCTGCATACTCAGAGGCTGTAAACAGTCTGAT +
Preference number: 5 (lower is better)
Translates to: CFSVPPISTIHRDSG*AGRACILRGCKQSD
Trigger: ATCAGACTGTTTACAGCCTCTGAGTATGCAGGCTCTCCCAGCCCAGCCTGAGTCTCTATGTATTGTGGAAATGGGTGGGACTGAGAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp AAACTAGTTTTATATATTCAGGAGGGTTCCGAGGGCAGAACTGAGCCACACTGCACTGTCCAGACAGCATaGGGGTTACCAGGGAGCTCA +
Preference number: 5 (lower is better)
Translates to: KLVLYIQEGSEGRTEPHCTVQTA*GLPGSS
Trigger: TGAGCTCCCTGGTAACCCCAATGCTGTCTGGACAGT...GCAGTGTGGCTCAGTTCTGCCCTCGGAACCCTCCTGAATATATAAAACTAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 90 bp CTGTCCAGTTCATCCACCAGCACGAGATTTTTGAGTGGTCTCGGCTaGAAGAAGAATGTGTCTCCTTCTTCTAGAGGCATGGCAGACGAA +
Preference number: 5 (lower is better)
Translates to: LSSSSTSTRFLSGLG*KKNVSPSSRGMADE
Trigger: TTCGTCTGCCATGCCTCTAGAAGAAGGAGACACATTCTTCTTTCAGCCGAGACCACTCAAAAATCTCGTGCTGGTGGATGAACTGGACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp TCTCTAAAGCCAAAATCCTCAAAGTGTTGGTGGAGATGGCAACAATaGCCTCGGGACACTGTTCAGAGGCAAAGCCCGATGCAAATTCCA +
Preference number: 5 (lower is better)
Translates to: SLKPKSSKCWWRWQQ*PRDTVQRQSPMQIP
Trigger: TGGAATTTGCATCGGGCTTTGCCTCTGAACAGTGTCCCGAGGGCATTGTTGCCATCTCCACCAACACTTTGAGGATTTTGGCTTTAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp GCTCCGTTTGGGCCAGAAAGAAGAACATGGACTTGGTCTTATGGGTaGCAGAGCAAACAAAAATCATTCCTCGTTCAGGGTCATCCAGGT +
Preference number: 5 (lower is better)
Translates to: APFGPERRTWTWSYG*QSKQKSFLVQGHPG
Trigger: ACCTGGATGACCCTGAACGAGGAATGATTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTCTGGCCCAAACGGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp GTGGTCTCGGCTGAAAGAAGAATGTGTCTCCTTCTTCTAGAGGCATaGCAGACGAAAACTCAGGTTCTTCATCATCATCTCCGAGATGGG +
Preference number: 5 (lower is better)
Translates to: VVSAERRMCLLLLEA*QTKTQVLHHHLRDG
Trigger: CCCATCTCGGAGATGATGATGAAGAACCTGAGTTTTCGTCTGCCATGCCTCTAGAAGAAGGAGACACATTCTTCTTTCAGCCGAGACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTATAACAGCTCTTCCTTaGGGATCCACAGCTAAGAAC +
Preference number: 5 (lower is better)
Translates to: PKLRATHYVQGADFSVNCITALP*GSTAKN
Trigger: GTTCTTAGCTGTGGATCCCAAAGGAAGAGCTGTTAT...ACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTACCGTTGTTCACAAGCTaGTACGTATACACAAAGCCC +
Preference number: 5 (lower is better)
Translates to: RSSGPHTMFKEQTSVSTVPLFTS*YVYTKP
Trigger: GGGCTTTGTGTATACGTACAAGCTTGTGAACAACGG...TACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CAGCCTGGCTGCACCTTTGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACTTACCCTGTGACCAATaGTCTGGATCCCAGATATGT +
Preference number: 5 (lower is better)
Translates to: QPGCTFACLPSSLKATLYLPCDQ*SGSQIC
Trigger: ACATATCTGGGATCCAGACAATTGGTCACAGGGTAA...GTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCAAAGGTGCAGCCAGGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CAGAAATTACACAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACCGGTCCCACAGGGCTTaGTTTCCAGTGGGATCTTCA +
Preference number: 5 (lower is better)
Translates to: QKLHNAGVALGIRKTVFHRSHRA*FPVGSS
Trigger: TGAAGATCCCACTGGAAACAAAGCCCTGTGGGACCG...GTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTGTGTAATTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTTCACGTTCTTCTGCTTGTaGGGTTCCATGGAGTTGAAC +
Preference number: 5 (lower is better)
Translates to: GNKENCVPHRSSGPHTMFTFFCL*GSMELN
Trigger: GTTCAACTCCATGGAACCCAACAAGCAGAAGAACGT...GAACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp AATCGTTTTCTTGCCGGGAGTCTTCCACTCATTAACTCTTTTATCTaGTCGTATGTGTCGGATGCCATCTGGATACACCTGCACCAGTGC +
Preference number: 5 (lower is better)
Translates to: NRFLAGSLPLINSFI*SYVSDAIWIHLHQC
Trigger: GCACTGGTGCAGGTGTATCCAGATGGCATCCGACACATACGAGCAGATAAAAGAGTTAATGAGTGGAAGACTCCCGGCAAGAAAACGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp GTCATCCAGGTCATTCCGTCTCCTGGGAATTGGACATCGGATGTCTaGCTGGTCACCAAAGTTCTTGTAGGTGATATAATTCTCAGAGCA +
Preference number: 5 (lower is better)
Translates to: VIQVIPSPGNWTSDV*LVTKVLVGDIILRA
Trigger: TGCTCTGAGAATTATATCACCTACAAGAACTTTGGTGACCAGCCAGACATCCGATGTCCAATTCCCAGGAGACGGAATGACCTGGATGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CCACACCGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAAACAACAATTTCCTGTaGCTTGGTTCCAGAGAAGTT +
Preference number: 5 (lower is better)
Translates to: PHRSSGPHTMFKEQTSVSNNNFL*LGSREV
Trigger: AACTTCTCTGGAACCAAGCAACAGGAAATTGTTGTT...TGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCGGTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGAAAACACCAGAGTGTTCGCTTaGTGGGCCTCCAGGGGAGAG +
Preference number: 5 (lower is better)
Translates to: ASLHLSKQHCTKLYLQENTRVFA*WASRGE
Trigger: CTCTCCCCTGGAGGCCCACAAAGCGAACACTCTGGT...GTTTTCCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTAACTGTAATAAGGAAGTaGCCATGTTCCTCCAAGGGT +
Preference number: 5 (lower is better)
Translates to: RSSGPHTMFKEQTSVSTVTVIRK*PCSSKG
Trigger: ACCCTTGGAGGAACATGGCAACTTCCTTATTACAGT...TACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp TTGGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTAAGAAGAACATGGACTaGGTCTTATGGGTGGCAGAG +
Preference number: 5 (lower is better)
Translates to: LGIRKTVFHTEAQGHTLCKKNMD*VLWVAE
Trigger: CTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTT...ACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGAAAACTTCTGTGAAGCCCCATaGAGCAAGCCCCGGTCCCAC +
Preference number: 5 (lower is better)
Translates to: ASLHLSKQHCTKLYLQENFCEAP*SKPRSH
Trigger: GTGGGACCGGGGCTTGCTCAATGGGGCTTCACAGAA...GTTTTCCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 90 bp AAGGTCCAGTTCATAGAAAGTAAGTGTCTGCTGGGTATTGGCTGCTaGTTCCCCTGTTGGATCATTGTCTGCCTCCTCATAATCCATTTC +
Preference number: 5 (lower is better)
Translates to: KVQFIESKCLLGIGC*FPCWIIVCLLIIHF
Trigger: GAAATGGATTATGAGGAGGCAGACAATGATCCAACAGGGGAAGCAGCAGCCAATACCCAGCAGACACTTACTTTCTATGAACTGGACCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 90 bp GCACTAATCATAACAGCTCTTCCTTTGGGATCCACAGCTAAGAACTaGCCAGGAACAATACGGCGACATCCGCTTTTGCCAAAAGTTTCT +
Preference number: 5 (lower is better)
Translates to: ALIITALPLGSTAKN*PGTIRRHPLLPKVS
Trigger: AGAAACTTTTGGCAAAAGCGGATGTCGCCGTATTGTTCCTGGCCAGTTCTTAGCTGTGGATCCCAAAGGAAGAGCTGTTATGATTAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GAAATTACACAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACTTGGTTCCAGAGAAGTaGCCATGGATGGCAAAGCTG +
Preference number: 5 (lower is better)
Translates to: EITQCRGGFGNKENCVPHLVPEK*PWMAKL
Trigger: CAGCTTTGCCATCCATGGCAACTTCTCTGGAACCAA...GTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTGTGTAATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp TGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGAGTGTCTGCTGGGTATaGGCTGCTGCTTCCCCTGTT +
Preference number: 5 (lower is better)
Translates to: CLPPFISQSNIVQNCIYRSVCWV*AAASPV
Trigger: AACAGGGGAAGCAGCAGCCAATACCCAGCAGACACT...CCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GAAATTACACAATGCAGGGGTGGCTTTGGGAATAAGGAAAACTGTGTTCCACACTGTGGGGTGTCTTCATaGGCCAAATCAGCTATCTGG +
Preference number: 5 (lower is better)
Translates to: EITQCRGGFGNKENCVPHCGVSS*AKSAIW
Trigger: CCAGATAGCTGATTTGGCCAATGAAGACACCCCACA...GTGTGGAACACAGTTTTCCTTATTCCCAAAGCCACCCCTGCATTGTGTAATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GGGAATAAGGAAAACTGTGTTCCACACCGAAGCTCAGGGCCACACACTATGTTCAAAATCCTCAAAGTGTaGGTGGAGATGGCAACAATG +
Preference number: 5 (lower is better)
Translates to: GNKENCVPHRSSGPHTMFKILKV*VEMATM
Trigger: CATTGTTGCCATCTCCACCAACACTTTGAGGATTTT...GAACATAGTGTGTGGCCCTGAGCTTCGGTGTGGAACACAGTTTTCCTTATTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp AATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGGCTTTCTCTGAGCTTTaGTGGCCTCAGTGTAGGCAT +
Preference number: 5 (lower is better)
Translates to: NAVLNTTSLLLCGKSQTLAFSEL*WPQCRH
Trigger: ATGCCTACACTGAGGCCACAAAAGCTCAGAGAAAGC...CAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 90 bp GAATTGGACATCGGATGTCTGGCTGGTCACCAAAGTTCTTGTAGGTaGTATAATTCTCAGAGCAGATTAGCACTCCACTTGGACCATCTG +
Preference number: 5 (lower is better)
Translates to: ELDIGCLAGHQSSCR*YNSQSRLALHLDHL
Trigger: CAGATGGTCCAAGTGGAGTGCTAATCTGCTCTGAGAATTATATCACCTACAAGAACTTTGGTGACCAGCCAGACATCCGATGTCCAATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp CGAAGCTCAGGGCCACACACTATGTTCAAGGAGCAGACTTCAGTGTCAACTGTATCCGAGATGGGCAATTaGATACAAGTAATGATTTCC +
Preference number: 5 (lower is better)
Translates to: RSSGPHTMFKEQTSVSTVSEMGN*IQVMIS
Trigger: GGAAATCATTACTTGTATCAAATTGCCCATCTCGGA...TACAGTTGACACTGAAGTCTGCTCCTTGAACATAGTGTGTGGCCCTGAGCTTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GGGAAAGGGAAAACACCCTCTTTAATATCCATGAATAGTGGGGTTACATTTACATCATCCACCTCATCGTaGGTGTTAGGTGGGAGCCTC +
Preference number: 5 (lower is better)
Translates to: GKGKTPSLISMNSGVTFTSSTSS*VLGGSL
Trigger: GAGGCTCCCACCTAACACCAACGATGAGGTGGATGA...TGTAAATGTAACCCCACTATTCATGGATATTAAAGAGGGTGTTTTCCCTTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp TTTGCTTGCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAATGATTCTGACAGTGTaGTCCACCAGCCCCACAGCC +
Preference number: 5 (lower is better)
Translates to: FACLPSSLKATLYKTVFTMILTV*STSPTA
Trigger: GGCTGTGGGGCTGGTGGACAACACTGTCAGAATCAT...TGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGCAAGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp ATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCAAAGAACCAAGACACCAATCTTCACCAGTGTaGGAGAACCTACACACTGCC +
Preference number: 5 (lower is better)
Translates to: IYMVSELMFYLHSKEPRHQSSPV*ENLHTA
Trigger: GGCAGTGTGTAGGTTCTCCAACACTGGTGAAGATTG...GTGTCTTGGTTCTTTGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp AATAGTGGGGTTACATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCACAATGGGAAGGCTACTaGATTGAAGACAGCACCAAG +
Preference number: 5 (lower is better)
Translates to: NSGVTFTWSVNSCSISTAQWEGY*IEDSTK
Trigger: CTTGGTGCTGTCTTCAATCAAGTAGCCTTCCCATTG...TGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAATGTAACCCCACTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GGGAAAGGGAAAACACCCTCTTTAATATCCATGAATAGTGGGGTTACATTTACACTCACCACACAAATGTaGCCAAACTTGTCTGCCCCA +
Preference number: 5 (lower is better)
Translates to: GKGKTPSLISMNSGVTFTLTTQM*PNLSAP
Trigger: TGGGGCAGACAAGTTTGGCAACATTTGTGTGGTGAG...TGTAAATGTAACCCCACTATTCATGGATATTAAAGAGGGTGTTTTCCCTTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGAAAACGAGACGTTCTTCTGCTaGTTGGGTTCCATGGAGTTG +
Preference number: 5 (lower is better)
Translates to: ASLHLSKQHCTKLYLQENETFFC*LGSMEL
Trigger: CAACTCCATGGAACCCAACAAGCAGAAGAACGTCTC...GTTTTCCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp TTTAACAATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACAGTATCAAAATACTaGAGGCGGATCTCGGTTACC +
Preference number: 5 (lower is better)
Translates to: FNNAVLNTTSLLLCGKSQTVSKY*RRISVT
Trigger: GGTAACCGAGATCCGCCTCAAGTATTTTGATACTGT...CTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATTGTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGAAAACTCCAACTTCTCCCCGTaGTTCACAAGCTTGTACGTA +
Preference number: 5 (lower is better)
Translates to: ASLHLSKQHCTKLYLQENSNFSP*FTSLYV
Trigger: TACGTACAAGCTTGTGAACAACGGGGAGAAGTTGGA...GTTTTCCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp GCCTCCCTTCATCTCTCAAAGCAACATTGTACAAAACTGTATTTACAGGAAAACTTGGGTTCCATGGAGTaGAACTGCTCACAAAGGTCT +
Preference number: 5 (lower is better)
Translates to: ASLHLSKQHCTKLYLQENLGSME*NCSQRS
Trigger: AGACCTTTGTGAGCAGTTCAACTCCATGGAACCCAA...GTTTTCCTGTAAATACAGTTTTGTACAATGTTGCTTTGAGAGATGAAGGGAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp AATGCAGTCTTAAATACCACATCACTTCTGCTGTGTGGCAAAAGCCAGACACTGTCTCAAACATATTCTTaGATGGCTGGTATTCCAAGA +
Preference number: 5 (lower is better)
Translates to: NAVLNTTSLLLCGKSQTLSQTYS*MAGIPR
Trigger: TCTTGGAATACCAGCCATCAAAGAATATGTTTGAGA...CAGTGTCTGGCTTTTGCCACACAGCAGAAGTGATGTGGTATTTAAGACTGCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp AGCAAAGAAGTAAAAGATCCAGTTATTGTTCTAATTAGGCCTCAAGCCTTTCTCTTCACAATCGTTTTCTaGCCGGGAGTCTTCCACTCA +
Preference number: 5 (lower is better)
Translates to: SKEVKDPVIVLIRPQAFLFTIVF*PGVFHS
Trigger: TGAGTGGAAGACTCCCGGCAAGAAAACGATTGTGAA...GAGAAAGGCTTGAGGCCTAATTAGAACAATAACTGGATCTTTTACTTCTTTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS-3UTR CAA 90 bp ATTTACATGGTCAGTGAACTCATGTTCTATCTCCACAGCAAAGAACCAAGACACCCAGATGAAACTTTCTaGGACATCAGACACAATTAC +
Preference number: 5 (lower is better)
Translates to: IYMVSELMFYLHSKEPRHPDETF*DIRHNY
Trigger: GTAATTGTGTCTGATGTCCAAGAAAGTTTCATCTGG...GTGTCTTGGTTCTTTGCTGTGGAGATAGAACATGAGTTCACTGACCATGTAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp AGCCCCACAGCCAGGAACCGAGATCGCTGTTCTCCAGGGGGCACGTaGGCCAGACTCATGCACACCACATCTGCTGACATCTCTTTCCGC +
Preference number: 6 (lower is better)
Translates to: SPTARNRDRCSPGGT*ARLMHTTSADISFR
Trigger: GCGGAAAGAGATGTCAGCAGATGTGGTGTGCATGAGTCTGGCCAACGTGCCCCCTGGAGAACAGCGATCTCGGTTCCTGGCTGTGGGGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp GCCAGGAACCGAGATCGCTGTTCTCCAGGGGGCACGTaGGCCAGACTCATGCACACCACATCTGCTGACATC +
Preference number: 6 (lower is better)
Translates to: ARNRDRCSPGGT*ARLMHTTSADI
Trigger: GATGTCAGCAGATGTGGTGTGCATGAGTCTGGCCAACGTGCCCCCTGGAGAACAGCGATCTCGGTTCCTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp ATCGCTGTTCTCCAGGGGGCACGTTGGCCAGACTCATaGACACCACATCTGCTGACATCTCTTTCCGCTCCG +
Preference number: 6 (lower is better)
Translates to: IAVLQGARWPDS*TPHLLTSLSAP
Trigger: CGGAGCGGAAAGAGATGTCAGCAGATGTGGTGTGCATGAGTCTGGCCAACGTGCCCCCTGGAGAACAGCGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp CCAGGAACCGAGATCGCTGTTCTCCAGGGGGCACGTTaGCCAGACTCATGCACACCACATCTGCTGACATCT +
Preference number: 6 (lower is better)
Translates to: PGTEIAVLQGAR*PDSCTPHLLTS
Trigger: AGATGTCAGCAGATGTGGTGTGCATGAGTCTGGCCAACGTGCCCCCTGGAGAACAGCGATCTCGGTTCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp CGACACCAATCAGTACCCTCCCCTGGAATGGGGCAATaGCAGCAGGGACCTCTTCCACTGGAGTCTTGTGCA +
Preference number: 6 (lower is better)
Translates to: RHQSVPSPGMGQ*QQGPLPLESCA
Trigger: TGCACAAGACTCCAGTGGAAGAGGTCCCTGCTGCCATTGCCCCATTCCAGGGGAGGGTACTGATTGGTGTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp CAGTCTGATGGGTCGAGGGAGATGATTCTGACAGTGTaGTCCACCAGCCCCACAGCCAGGAACCGAGATCGC +
Preference number: 6 (lower is better)
Translates to: QSDGSREMILTV*STSPTARNRDR
Trigger: GCGATCTCGGTTCCTGGCTGTGGGGCTGGTGGACAACACTGTCAGAATCATCTCCCTCGACCCATCAGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp CGAAAGCTCAGGTGGTCCCGTCCACAAAGAGGGGGATaGTCAGACCGCAGGTGCATTTCAACATGCTGGAAG +
Preference number: 6 (lower is better)
Translates to: RKLRWSRPQRGG*SDRRCISTCWK
Trigger: CTTCCAGCATGTTGAAATGCACCTGCGGTCTGAGCATCCCCCTCTTTGTGGACGGGACCACCTGAGCTTTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp GGACCGGGGTCCCCTACCACAGGCTACATACAGCTGTaGGGTGTCTTCATTGGCCAAATCAGCTATCTGGCA +
Preference number: 6 (lower is better)
Translates to: GPGSPTTGYIQL*GVFIGQISYLA
Trigger: TGCCAGATAGCTGATTTGGCCAATGAAGACACCCCACAGCTGTATGTAGCCTGTGGTAGGGGACCCCGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp GAAGCCCCATTGAGCAAGCCCCGGTCCCACAGGGCTTaGTTTCCAGTGGGATCTTCATCCACCTCATCGTTG +
Preference number: 6 (lower is better)
Translates to: EAPLSKPRSHRA*FPVGSSSTSSL
Trigger: CAACGATGAGGTGGATGAAGATCCCACTGGAAACAAAGCCCTGTGGGACCGGGGCTTGCTCAATGGGGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp GGCTGTAAACAGTCTGATGGGTCGAGGGAGATGATTCTGACAGTGTaGTCCACCAGCCCCACAGCCAGGAACCGAGATCGCTGTTCTCCA +
Preference number: 6 (lower is better)
Translates to: GCKQSDGSREMILTV*STSPTARNRDRCSP
Trigger: TGGAGAACAGCGATCTCGGTTCCTGGCTGTGGGGCTGGTGGACAACACTGTCAGAATCATCTCCCTCGACCCATCAGACTGTTTACAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp GCCTTCTGTGAAGCCCCATTGAGCAAGCCCCGGTCCCACAGGGCTTaGTTTCCAGTGGGATCTTCATCCACCTCATCGTTGGTGTTAGGT +
Preference number: 6 (lower is better)
Translates to: AFCEAPLSKPRSHRA*FPVGSSSTSSLVLG
Trigger: ACCTAACACCAACGATGAGGTGGATGAAGATCCCACTGGAAACAAAGCCCTGTGGGACCGGGGCTTGCTCAATGGGGCTTCACAGAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp TGGGAGGTTTTCATTGAGGAATGCTGCTGCCATTTCTaGAGCCAACTCCCGCTCATCCTCCCCTGCTGCTTC +
Preference number: 6 (lower is better)
Translates to: WEVFIEECCCHF*SQLPLILPCCF
Trigger: GAAGCAGCAGGGGAGGATGAGCGGGAGTTGGCTGCAGAAATGGCAGCAGCATTCCTCAATGAAAACCTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp GGTTCATCACCCGAATCACAGAGGCCCACTGCCCATTaGCAGCCTTGGGAGCTCCAAAAATGGATTCTGGGA +
Preference number: 6 (lower is better)
Translates to: GSSPESQRPTAH*QPWELQKWILG
Trigger: TCCCAGAATCCATTTTTGGAGCTCCCAAGGCTGGCAATGGGCAGTGGGCCTCTGTGATTCGGGTGATGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp TCCCGTCCACAAAGAGGGGGATGCTCAGACCGCAGGTaGATTTCAACATGCTGGAAGAAGTCATGGTCCTCG +
Preference number: 6 (lower is better)
Translates to: SRPQRGGCSDRR*ISTCWKKSWSS
Trigger: CGAGGACCATGACTTCTTCCAGCATGTTGAAATGCACCTGCGGTCTGAGCATCCCCCTCTTTGTGGACGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp AGCTCTCCCCCAGTCAGGGCGATCACCACTTGTCGCTaGTTCACTGCACACTTCACAATCGTTTTCTTGCCG +
Preference number: 6 (lower is better)
Translates to: SSPPVRAITTCR*FTAHFTIVFLP
Trigger: CGGCAAGAAAACGATTGTGAAGTGTGCAGTGAACCAGCGACAAGTGGTGATCGCCCTGACTGGGGGAGAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp CCCCTGCCACAGATCGAGGGCTCAGTATCAAGTCCTTaGCAACACCCACCAGCACATACCAATCTTCACCAG +
Preference number: 6 (lower is better)
Translates to: PLPQIEGSVSSP*QHPPAHTNLHQ
Trigger: CTGGTGAAGATTGGTATGTGCTGGTGGGTGTTGCCAAGGACTTGATACTGAGCCCTCGATCTGTGGCAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp CTGGAATGGGGCAATGGCAGCAGGGACCTCTTCCACTaGAGTCTTGTGCAGAAACTCCAACTTCTCCCCGTT +
Preference number: 6 (lower is better)
Translates to: LEWGNGSRDLFH*SLVQKLQLLPV
Trigger: AACGGGGAGAAGTTGGAGTTTCTGCACAAGACTCCAGTGGAAGAGGTCCCTGCTGCCATTGCCCCATTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp CCCCCTGCCACAGATCGAGGGCTCAGTATCAAGTCCTaGGCAACACCCACCAGCACATACCAATCTTCACCA +
Preference number: 6 (lower is better)
Translates to: PPATDRGLSIKS*ATPTSTYQSSP
Trigger: TGGTGAAGATTGGTATGTGCTGGTGGGTGTTGCCAAGGACTTGATACTGAGCCCTCGATCTGTGGCAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp CATCTCGAAATAGACCAGCTCTCCCCCAGTCAGGGCGATCACCACTaGTCGCTGGTTCACTGCACACTTCACAATCGTTTTCTTGCCGGG +
Preference number: 6 (lower is better)
Translates to: HLEIDQLSPSQGDHH*SLVHCTLHNRFLAG
Trigger: CCCGGCAAGAAAACGATTGTGAAGTGTGCAGTGAACCAGCGACAAGTGGTGATCGCCCTGACTGGGGGAGAGCTGGTCTATTTCGAGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp CCCTGGATAGGGTTCATCACCCGAATCACAGAGGCCCACTGCCCATaGCCAGCCTTGGGAGCTCCAAAAATGGATTCTGGGAGGTTTTCA +
Preference number: 6 (lower is better)
Translates to: PWIGFITRITEAHCP*PALGAPKMDSGRFS
Trigger: TGAAAACCTCCCAGAATCCATTTTTGGAGCTCCCAAGGCTGGCAATGGGCAGTGGGCCTCTGTGATTCGGGTGATGAACCCTATCCAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 72 bp GCTTGGTTCCAGAGAAGTTGCCATGGATGGCAAAGCTaGTGCCAGTGGCCCGCTGTAAGGTCAGGTTGTACA +
Preference number: 6 (lower is better)
Translates to: AWFQRSCHGWQS*CQWPAVRSGCT
Trigger: TGTACAACCTGACCTTACAGCGGGCCACTGGCATCAGCTTTGCCATCCATGGCAACTTCTCTGGAACCAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp CCCAGTCAGGGCGATCACCACTTGTCGCTGGTTCACTaGACACTTCACAATCGTTTTCTTGCCGGGAGTCTT +
Preference number: 6 (lower is better)
Translates to: PSQGDHHLSLVH*TLHNRFLAGSL
Trigger: AAGACTCCCGGCAAGAAAACGATTGTGAAGTGTGCAGTGAACCAGCGACAAGTGGTGATCGCCCTGACTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp TGGATAGGGTTCATCACCCGAATCACAGAGGCCCACTaGCCATTGCCAGCCTTGGGAGCTCCAAAAATGGAT +
Preference number: 6 (lower is better)
Translates to: WIGFITRITEAH*PLPALGAPKMD
Trigger: ATCCATTTTTGGAGCTCCCAAGGCTGGCAATGGGCAGTGGGCCTCTGTGATTCGGGTGATGAACCCTATCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp GGTGGGGTTCGGTCCAGCTCCTCAGAGACGTTCTTCTaGTTGTTGGGTTCCATGGAGTTGAACTGCTCACAA +
Preference number: 6 (lower is better)
Translates to: GGVRSSSSETFF*LLGSMELNCSQ
Trigger: TTGTGAGCAGTTCAACTCCATGGAACCCAACAAGCAGAAGAACGTCTCTGAGGAGCTGGACCGAACCCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp CATCTTCAATGTGCCGACGGACTGTCCAGACAGCATTaGGGTTACCAGGGAGCTCAGAAACAGCCATTTCCG +
Preference number: 6 (lower is better)
Translates to: HLQCADGLSRQH*GYQGAQKQPFP
Trigger: CGGAAATGGCTGTTTCTGAGCTCCCTGGTAACCCCAATGCTGTCTGGACAGTCCGTCGGCACATTGAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp TATAGACAAGGGACTCTGAGCCTCCAGGGATCAGTGTaGTCTTCTGTAGCGACAGCACGGTCTCTCCAACGT +
Preference number: 6 (lower is better)
Translates to: YRQGTLSLQGSV*SSVATARSLQR
Trigger: ACGTTGGAGAGACCGTGCTGTCGCTACAGAAGACCACACTGATCCCTGGAGGCTCAGAGTCCCTTGTCTATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp GGGGTTCGGTCCAGCTCCTCAGAGACGTTCTTCTGCTaGTTGGGTTCCATGGAGTTGAACTGCTCACAAAGG +
Preference number: 6 (lower is better)
Translates to: GVRSSSSETFFC*LGSMELNCSQR
Trigger: CCTTTGTGAGCAGTTCAACTCCATGGAACCCAACAAGCAGAAGAACGTCTCTGAGGAGCTGGACCGAACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp ACACCTGCACCAGTGCATCATCTCCTAACAAGGAGCAGGACAAGGTaGGAGTGGTGCCCAAGAAGCCAGAGTCAGTCACTTCTTCCACAG +
Preference number: 6 (lower is better)
Translates to: TPAPVHHLLTRSRTR*EWCPRSQSQSLLPQ
Trigger: CTGTGGAAGAAGTGACTGACTCTGGCTTCTTGGGCACCACTCCAACCTTGTCCTGCTCCTTGTTAGGAGATGATGCACTGGTGCAGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp TACACAAAGCCCCCTGCCACAGATCGAGGGCTCAGTATCAAGTCCTaGGCAACACCCACCAGCACATACCAATCTTCACCAGTGTTGGAG +
Preference number: 6 (lower is better)
Translates to: YTKPPATDRGLSIKS*ATPTSTYQSSPVLE
Trigger: CTCCAACACTGGTGAAGATTGGTATGTGCTGGTGGGTGTTGCCAAGGACTTGATACTGAGCCCTCGATCTGTGGCAGGGGGCTTTGTGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 72 bp ATAGGATTCTCAAATCCCACGTCTACGCCAACCACGTaGTACACCAGAGTGTTCGCTTTGTGGGCCTCCAGG +
Preference number: 6 (lower is better)
Translates to: IGFSNPTSTPTT*YTRVFALWASR
Trigger: CCTGGAGGCCCACAAAGCGAACACTCTGGTGTATCACGTGGTTGGCGTAGACGTGGGATTTGAGAATCCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 72 bp CCGATGCAAATTCCAGGGTCTCATAAGACAGAGGGGTaGGATGGAAGCGAGACTGGTAAGAGTAGCTCAGCC +
Preference number: 6 (lower is better)
Translates to: PMQIPGSHKTEG*DGSETGKSSSA
Trigger: GGCTGAGCTACTCTTACCAGTCTCGCTTCCATCTCACCCCTCTGTCTTATGAGACCCTGGAATTTGCATCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp CCAAAATCCTCAAAGTGTTGGTGGAGATGGCAACAATaGCCTCGGGACACTGTTCAGAGGCAAAGCCCGATG +
Preference number: 6 (lower is better)
Translates to: PKSSKCWWRWQQ*PRDTVQRQSPM
Trigger: CATCGGGCTTTGCCTCTGAACAGTGTCCCGAGGGCATTGTTGCCATCTCCACCAACACTTTGAGGATTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp GTCCCACCCATTTCCACAATACATAGAGACTCAGGCTaGGCTGGGAGAGCCTGCATACTCAGAGGCTGTAAA +
Preference number: 6 (lower is better)
Translates to: VPPISTIHRDSG*AGRACILRGCK
Trigger: TTTACAGCCTCTGAGTATGCAGGCTCTCCCAGCCCAGCCTGAGTCTCTATGTATTGTGGAAATGGGTGGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp GTTCAGGGTCATCCAGGTCATTCCGTCTCCTGGGAATaGGACATCGGATGTCTGGCTGGTCACCAAAGTTCT +
Preference number: 6 (lower is better)
Translates to: VQGHPGHSVSWE*DIGCLAGHQSS
Trigger: AGAACTTTGGTGACCAGCCAGACATCCGATGTCCAATTCCCAGGAGACGGAATGACCTGGATGACCCTGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp TCATCTTCAATGTGCCGACGGACTGTCCAGACAGCATaGGGGTTACCAGGGAGCTCAGAAACAGCCATTTCC +
Preference number: 6 (lower is better)
Translates to: SSSMCRRTVQTA*GLPGSSETAIS
Trigger: GGAAATGGCTGTTTCTGAGCTCCCTGGTAACCCCAATGCTGTCTGGACAGTCCGTCGGCACATTGAAGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp ATAGACCAGCTCTCCCCCAGTCAGGGCGATCACCACTaGTCGCTGGTTCACTGCACACTTCACAATCGTTTT +
Preference number: 6 (lower is better)
Translates to: IDQLSPSQGDHH*SLVHCTLHNRF
Trigger: AAAACGATTGTGAAGTGTGCAGTGAACCAGCGACAAGTGGTGATCGCCCTGACTGGGGGAGAGCTGGTCTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp GCAACACCCACCAGCACATACCAATCTTCACCAGTGTaGGAGAACCTACACACTGCCACACTAAAGGCTGCC +
Preference number: 6 (lower is better)
Translates to: ATPTSTYQSSPV*ENLHTATLKAA
Trigger: GGCAGCCTTTAGTGTGGCAGTGTGTAGGTTCTCCAACACTGGTGAAGATTGGTATGTGCTGGTGGGTGTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp GCATCAAACTCATCTTCAATGTGCCGACGGACTGTCCAGACAGCATaGGGGTTACCAGGGAGCTCAGAAACAGCCATTTCCGACACCTCA +
Preference number: 6 (lower is better)
Translates to: ASNSSSMCRRTVQTA*GLPGSSETAISDTS
Trigger: TGAGGTGTCGGAAATGGCTGTTTCTGAGCTCCCTGGTAACCCCAATGCTGTCTGGACAGTCCGTCGGCACATTGAAGATGAGTTTGATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp TTGCCAGCCTTGGGAGCTCCAAAAATGGATTCTGGGAGGTTTTCATaGAGGAATGCTGCTGCCATTTCTGCAGCCAACTCCCGCTCATCC +
Preference number: 6 (lower is better)
Translates to: LPALGAPKMDSGRFS*RNAAAISAANSRSS
Trigger: GGATGAGCGGGAGTTGGCTGCAGAAATGGCAGCAGCATTCCTCAATGAAAACCTCCCAGAATCCATTTTTGGAGCTCCCAAGGCTGGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp GGAGTCTTGTGCAGAAACTCCAACTTCTCCCCGTTGTTCACAAGCTaGTACGTATACACAAAGCCCCCTGCCACAGATCGAGGGCTCAGT +
Preference number: 6 (lower is better)
Translates to: GVLCRNSNFSPLFTS*YVYTKPPATDRGLS
Trigger: ACTGAGCCCTCGATCTGTGGCAGGGGGCTTTGTGTATACGTACAAGCTTGTGAACAACGGGGAGAAGTTGGAGTTTCTGCACAAGACTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp TCAGGTGGGGTTCGGTCCAGCTCCTCAGAGACGTTCTTCTGCTTGTaGGGTTCCATGGAGTTGAACTGCTCACAAAGGTCTCCATCAATC +
Preference number: 6 (lower is better)
Translates to: SGGVRSSSSETFFCL*GSMELNCSQRSPSI
Trigger: GATTGATGGAGACCTTTGTGAGCAGTTCAACTCCATGGAACCCAACAAGCAGAAGAACGTCTCTGAGGAGCTGGACCGAACCCCACCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp ACTTCAGGTGGGGTTCGGTCCAGCTCCTCAGAGACGTTCTTCTGCTaGTTGGGTTCCATGGAGTTGAACTGCTCACAAAGGTCTCCATCA +
Preference number: 6 (lower is better)
Translates to: TSGGVRSSSSETFFC*LGSMELNCSQRSPS
Trigger: TGATGGAGACCTTTGTGAGCAGTTCAACTCCATGGAACCCAACAAGCAGAAGAACGTCTCTGAGGAGCTGGACCGAACCCCACCTGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp AAGTCCTTGGCAACACCCACCAGCACATACCAATCTTCACCAGTGTaGGAGAACCTACACACTGCCACACTAAAGGCTGCCTCGTTTTGC +
Preference number: 6 (lower is better)
Translates to: KSLATPTSTYQSSPV*ENLHTATLKAASFC
Trigger: GCAAAACGAGGCAGCCTTTAGTGTGGCAGTGTGTAGGTTCTCCAACACTGGTGAAGATTGGTATGTGCTGGTGGGTGTTGCCAAGGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp AACCTACACACTGCCACACTAAAGGCTGCCTCGTTTTaGTCCAACTGGACAAGGTCTAGTGTATTCCCCTGG +
Preference number: 6 (lower is better)
Translates to: NLHTATLKAASF*SNWTRSSVFPW
Trigger: CCAGGGGAATACACTAGACCTTGTCCAGTTGGAGCAAAACGAGGCAGCCTTTAGTGTGGCAGTGTGTAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp GTTGTTCACAAGCTTGTACGTATACACAAAGCCCCCTaGCACAGATCGAGGGCTCAGTATCAAGTCCTTGGC +
Preference number: 6 (lower is better)
Translates to: VVHKLVRIHKAP*HRSRAQYQVLG
Trigger: GCCAAGGACTTGATACTGAGCCCTCGATCTGTGGCAGGGGGCTTTGTGTATACGTACAAGCTTGTGAACAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp ACAATTTCCTGTTGCTTGGTTCCAGAGAAGTTGCCATaGATGGCAAAGCTGATGCCAGTGGCCCGCTGTAAG +
Preference number: 6 (lower is better)
Translates to: TISCCLVPEKLP*MAKLMPVARCK
Trigger: CTTACAGCGGGCCACTGGCATCAGCTTTGCCATCCATGGCAACTTCTCTGGAACCAAGCAACAGGAAATTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp TTCAGGGTCATCCAGGTCATTCCGTCTCCTGGGAATTaGACATCGGATGTCTGGCTGGTCACCAAAGTTCTT +
Preference number: 6 (lower is better)
Translates to: FRVIQVIPSPGN*TSDVWLVTKVL
Trigger: AAGAACTTTGGTGACCAGCCAGACATCCGATGTCCAATTCCCAGGAGACGGAATGACCTGGATGACCCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp CATCATCTCCTAACAAGGAGCAGGACAAGGTTGGAGTaGTGCCCAAGAAGCCAGAGTCAGTCACTTCTTCCA +
Preference number: 6 (lower is better)
Translates to: HHLLTRSRTRLE*CPRSQSQSLLP
Trigger: TGGAAGAAGTGACTGACTCTGGCTTCTTGGGCACCACTCCAACCTTGTCCTGCTCCTTGTTAGGAGATGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp TTTTGCTCCAACTGGACAAGGTCTAGTGTATTCCCCTaGATAGGGTTCATCACCCGAATCACAGAGGCCCAC +
Preference number: 6 (lower is better)
Translates to: FCSNWTRSSVFP*IGFITRITEAH
Trigger: GTGGGCCTCTGTGATTCGGGTGATGAACCCTATCCAGGGGAATACACTAGACCTTGTCCAGTTGGAGCAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp ACCTCTTCCACTGGAGTCTTGTGCAGAAACTCCAACTTCTCCCCGTaGTTCACAAGCTTGTACGTATACACAAAGCCCCCTGCCACAGAT +
Preference number: 6 (lower is better)
Translates to: TSSTGVLCRNSNFSP*FTSLYVYTKPPATD
Trigger: ATCTGTGGCAGGGGGCTTTGTGTATACGTACAAGCTTGTGAACAACGGGGAGAAGTTGGAGTTTCTGCACAAGACTCCAGTGGAAGAGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp ATAACAGCTCTTCCTTTGGGATCCACAGCTAAGAACTaGCCAGGAACAATACGGCGACATCCGCTTTTGCCA +
Preference number: 6 (lower is better)
Translates to: ITALPLGSTAKN*PGTIRRHPLLP
Trigger: TGGCAAAAGCGGATGTCGCCGTATTGTTCCTGGCCAGTTCTTAGCTGTGGATCCCAAAGGAAGAGCTGTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp TGCAGAAACTCCAACTTCTCCCCGTTGTTCACAAGCTaGTACGTATACACAAAGCCCCCTGCCACAGATCGA +
Preference number: 6 (lower is better)
Translates to: CRNSNFSPLFTS*YVYTKPPATDR
Trigger: TCGATCTGTGGCAGGGGGCTTTGTGTATACGTACAAGCTTGTGAACAACGGGGAGAAGTTGGAGTTTCTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp GCTTTGTTTCCAGTGGGATCTTCATCCACCTCATCGTaGGTGTTAGGTGGGAGCCTCACCACACAAATGTTG +
Preference number: 6 (lower is better)
Translates to: ALFPVGSSSTSS*VLGGSLTTQML
Trigger: CAACATTTGTGTGGTGAGGCTCCCACCTAACACCAACGATGAGGTGGATGAAGATCCCACTGGAAACAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 72 bp AGAGGCTGTCCAGTTCATCCACCAGCACGAGATTTTTaGGTGGTCTCGGCTGAAAGAAGAATGTGTCTCCTT +
Preference number: 6 (lower is better)
Translates to: RGCPVHPPARDF*VVSAERRMCLL
Trigger: AAGGAGACACATTCTTCTTTCAGCCGAGACCACTCAAAAATCTCGTGCTGGTGGATGAACTGGACAGCCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp CTTGCCGGGAGTCTTCCACTCATTAACTCTTTTATCTaGTCGTATGTGTCGGATGCCATCTGGATACACCTG +
Preference number: 6 (lower is better)
Translates to: LAGSLPLINSFI*SYVSDAIWIHL
Trigger: CAGGTGTATCCAGATGGCATCCGACACATACGAGCAGATAAAAGAGTTAATGAGTGGAAGACTCCCGGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp ATACCAATCTTCACCAGTGTTGGAGAACCTACACACTaGCACACTAAAGGCTGCCTCGTTTTGCTCCAACTG +
Preference number: 6 (lower is better)
Translates to: IPIFTSVGEPTH*HTKGCLVLLQL
Trigger: CAGTTGGAGCAAAACGAGGCAGCCTTTAGTGTGGCAGTGTGTAGGTTCTCCAACACTGGTGAAGATTGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp GCTGTCCAGTTCATCCACCAGCACGAGATTTTTGAGTaGTCTCGGCTGAAAGAAGAATGTGTCTCCTTCTTC +
Preference number: 6 (lower is better)
Translates to: AVQFIHQHEIFE*SRLKEECVSFF
Trigger: GAAGAAGGAGACACATTCTTCTTTCAGCCGAGACCACTCAAAAATCTCGTGCTGGTGGATGAACTGGACAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp TCTCTAAAGCCAAAATCCTCAAAGTGTTGGTGGAGATaGCAACAATGCCCTCGGGACACTGTTCAGAGGCAA +
Preference number: 6 (lower is better)
Translates to: SLKPKSSKCWWR*QQCPRDTVQRQ
Trigger: TTGCCTCTGAACAGTGTCCCGAGGGCATTGTTGCCATCTCCACCAACACTTTGAGGATTTTGGCTTTAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp CAAGCTTCTCTAAAGCCAAAATCCTCAAAGTGTTGGTaGAGATGGCAACAATGCCCTCGGGACACTGTTCAG +
Preference number: 6 (lower is better)
Translates to: QASLKPKSSKCW*RWQQCPRDTVQ
Trigger: CTGAACAGTGTCCCGAGGGCATTGTTGCCATCTCCACCAACACTTTGAGGATTTTGGCTTTAGAGAAGCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp AGGGTGGATGACAAACTTCCTGGGTGTGTACTGCAATaGGAAGGCTACTTGATTGAAGACAGCACCAAGCTT +
Preference number: 6 (lower is better)
Translates to: RVDDKLPGCVLQ*EGYLIEDSTKL
Trigger: AAGCTTGGTGCTGTCTTCAATCAAGTAGCCTTCCCATTGCAGTACACACCCAGGAAGTTTGTCATCCACCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp ACTGGAGTCTTGTGCAGAAACTCCAACTTCTCCCCGTaGTTCACAAGCTTGTACGTATACACAAAGCCCCCT +
Preference number: 6 (lower is better)
Translates to: TGVLCRNSNFSP*FTSLYVYTKPP
Trigger: AGGGGGCTTTGTGTATACGTACAAGCTTGTGAACAACGGGGAGAAGTTGGAGTTTCTGCACAAGACTCCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp TCCAGCTCCTCAGAGACGTTCTTCTGCTTGTTGGGTTCCATGGAGTaGAACTGCTCACAAAGGTCTCCATCAATCACATTCTTAACAGGG +
Preference number: 6 (lower is better)
Translates to: SSSSETFFCLLGSME*NCSQRSPSITFLTG
Trigger: CCCTGTTAAGAATGTGATTGATGGAGACCTTTGTGAGCAGTTCAACTCCATGGAACCCAACAAGCAGAAGAACGTCTCTGAGGAGCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp GAGCTGGTTCTCGTTACGCTTGTATCGAACCCAGATGAAACTTTCTaGGACATCAGACACAATTACCCTGTGACCAATTGTCTGGATCCC +
Preference number: 6 (lower is better)
Translates to: ELVLVTLVSNPDETF*DIRHNYPVTNCLDP
Trigger: GGGATCCAGACAATTGGTCACAGGGTAATTGTGTCTGATGTCCAAGAAAGTTTCATCTGGGTTCGATACAAGCGTAACGAGAACCAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 72 bp TCCTGGGTGTGTACTGCAATGGGAAGGCTACTTGATTaGAGACAGCACCAAGCTTCTCTAAAGCCAAAATCC +
Preference number: 6 (lower is better)
Translates to: SWVCTAMGRLLD*RQHQASLKPKS
Trigger: GGATTTTGGCTTTAGAGAAGCTTGGTGCTGTCTTCAATCAAGTAGCCTTCCCATTGCAGTACACACCCAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp TTCATAGAAAGTAAGTGTCTGCTGGGTATTGGCTGCTaGTTCCCCTGTTGGATCATTGTCTGCCTCCTCATA +
Preference number: 6 (lower is better)
Translates to: FIESKCLLGIGC*FPCWIIVCLLI
Trigger: TATGAGGAGGCAGACAATGATCCAACAGGGGAAGCAGCAGCCAATACCCAGCAGACACTTACTTTCTATGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp GGGCCAGAAAGAAGAACATGGACTTGGTCTTATGGGTaGCAGAGCAAACAAAAATCATTCCTCGTTCAGGGT +
Preference number: 6 (lower is better)
Translates to: GPERRTWTWSYG*QSKQKSFLVQG
Trigger: ACCCTGAACGAGGAATGATTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTCTGGCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp CCTGCTCCGTTTGGGCCAGAAAGAAGAACATGGACTTaGTCTTATGGGTGGCAGAGCAAACAAAAATCATTC +
Preference number: 6 (lower is better)
Translates to: PAPFGPERRTWT*SYGWQSKQKSF
Trigger: GAATGATTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTCTGGCCCAAACGGAGCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp TATCTCCCTGCTCCGTTTGGGCCAGAAAGAAGAACATaGACTTGGTCTTATGGGTGGCAGAGCAAACAAAAA +
Preference number: 6 (lower is better)
Translates to: YLPAPFGPERRT*TWSYGWQSKQK
Trigger: TTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTCTGGCCCAAACGGAGCAGGGAGATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp CCCTGCTCCGTTTGGGCCAGAAAGAAGAACATGGACTaGGTCTTATGGGTGGCAGAGCAAACAAAAATCATT +
Preference number: 6 (lower is better)
Translates to: PCSVWARKKNMD*VLWVAEQTKII
Trigger: AATGATTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTCTGGCCCAAACGGAGCAGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp AAGATATCTCCCTGCTCCGTTTGGGCCAGAAAGAAGAACATGGACTaGGTCTTATGGGTGGCAGAGCAAACAAAAATCATTCCTCGTTCA +
Preference number: 6 (lower is better)
Translates to: KISPCSVWARKKNMD*VLWVAEQTKIIPRS
Trigger: TGAACGAGGAATGATTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTCTGGCCCAAACGGAGCAGGGAGATATCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp ATCACCACTTGTCGCTGGTTCACTGCACACTTCACAATCGTTTTCTaGCCGGGAGTCTTCCACTCATTAACTCTTTTATCTGCTCGTATG +
Preference number: 6 (lower is better)
Translates to: ITTCRWFTAHFTIVF*PGVFHSLTLLSARM
Trigger: CATACGAGCAGATAAAAGAGTTAATGAGTGGAAGACTCCCGGCAAGAAAACGATTGTGAAGTGTGCAGTGAACCAGCGACAAGTGGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 72 bp CAGAGACGTTCTTCTGCTTGTTGGGTTCCATGGAGTTaGACTGCTCACAAAGGTCTCCATCAATCACATTCT +
Preference number: 6 (lower is better)
Translates to: QRRSSACWVPWS*TAHKGLHQSHS
Trigger: AGAATGTGATTGATGGAGACCTTTGTGAGCAGTTCAACTCCATGGAACCCAACAAGCAGAAGAACGTCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp TCCAAAATCTTCCCACGGGAAACAACAATTTCCTGTTaGTTGGTTCCAGAGAAGTTGCCATGGATGGCAAAG +
Preference number: 6 (lower is better)
Translates to: SKIFPRETTISC*LVPEKLPWMAK
Trigger: CTTTGCCATCCATGGCAACTTCTCTGGAACCAAGCAACAGGAAATTGTTGTTTCCCGTGGGAAGATTTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp GTCATTCCGTCTCCTGGGAATTGGACATCGGATGTCTaGCTGGTCACCAAAGTTCTTGTAGGTGATATAATT +
Preference number: 6 (lower is better)
Translates to: VIPSPGNWTSDV*LVTKVLVGDII
Trigger: AATTATATCACCTACAAGAACTTTGGTGACCAGCCAGACATCCGATGTCCAATTCCCAGGAGACGGAATGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp CTCCAAAATCTTCCCACGGGAAACAACAATTTCCTGTaGCTTGGTTCCAGAGAAGTTGCCATGGATGGCAAA +
Preference number: 6 (lower is better)
Translates to: LQNLPTGNNNFL*LGSREVAMDGK
Trigger: TTTGCCATCCATGGCAACTTCTCTGGAACCAAGCAACAGGAAATTGTTGTTTCCCGTGGGAAGATTTTGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp ACACCAAATACTTCAACAGTGAGGAGGGTATGTACTTaGCCAGTGTTAGGGTCTGGGCGTAGTAACTCCAAA +
Preference number: 6 (lower is better)
Translates to: TPNTSTVRRVCT*PVLGSGRSNSK
Trigger: TTTGGAGTTACTACGCCCAGACCCTAACACTGGCAAAGTACATACCCTCCTCACTGTTGAAGTATTTGGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp CACATAGCAGCAGCAACAGGCACAGTATCAAAATACTaGAGGCGGATCTCGGTTACCATATCTTCATCTGTC +
Preference number: 6 (lower is better)
Translates to: HIAAATGTVSKY*RRISVTISSSV
Trigger: GACAGATGAAGATATGGTAACCGAGATCCGCCTCAAGTATTTTGATACTGTGCCTGTTGCTGCTGCTATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 90 bp ACCAATTTCTGCTTCTCAATTGCACTAATCATAACAGCTCTTCCTTaGGGATCCACAGCTAAGAACTGGCCAGGAACAATACGGCGACAT +
Preference number: 6 (lower is better)
Translates to: TNFCFSIALIITALP*GSTAKNWPGTIRRH
Trigger: ATGTCGCCGTATTGTTCCTGGCCAGTTCTTAGCTGTGGATCCCAAAGGAAGAGCTGTTATGATTAGTGCAATTGAGAAGCAGAAATTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp GTTTGGGCCAGAAAGAAGAACATGGACTTGGTCTTATaGGTGGCAGAGCAAACAAAAATCATTCCTCGTTCA +
Preference number: 6 (lower is better)
Translates to: VWARKKNMDLVL*VAEQTKIIPRS
Trigger: TGAACGAGGAATGATTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTCTGGCCCAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp GCTGAAAGAAGAATGTGTCTCCTTCTTCTAGAGGCATaGCAGACGAAAACTCAGGTTCTTCATCATCATCTC +
Preference number: 6 (lower is better)
Translates to: AERRMCLLLLEA*QTKTQVLHHHL
Trigger: GAGATGATGATGAAGAACCTGAGTTTTCGTCTGCCATGCCTCTAGAAGAAGGAGACACATTCTTCTTTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp TGTCGCTGGTTCACTGCACACTTCACAATCGTTTTCTaGCCGGGAGTCTTCCACTCATTAACTCTTTTATCT +
Preference number: 6 (lower is better)
Translates to: CRWFTAHFTIVF*PGVFHSLTLLS
Trigger: AGATAAAAGAGTTAATGAGTGGAAGACTCCCGGCAAGAAAACGATTGTGAAGTGTGCAGTGAACCAGCGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS GCA 72 bp ACGTTCTTCTGCTTGTTGGGTTCCATGGAGTTGAACTaGTCACAAAGGTCTCCATCAATCACATTCTTAACA +
Preference number: 6 (lower is better)
Translates to: TFFCLLGSMELN*SQRSPSITFLT
Trigger: TGTTAAGAATGTGATTGATGGAGACCTTTGTGAGCAGTTCAACTCCATGGAACCCAACAAGCAGAAGAACGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp TCTAAAGTGATCTTAAAGATATCTCCCTGCTCCGTTTaGGCCAGAAAGAAGAACATGGACTTGGTCTTATGG +
Preference number: 6 (lower is better)
Translates to: SKVILKISPCSV*ARKKNMDLVLW
Trigger: CCATAAGACCAAGTCCATGTTCTTCTTTCTGGCCCAAACGGAGCAGGGAGATATCTTTAAGATCACTTTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp CTCGTTACGCTTGTATCGAACCCAGATGAAACTTTCTaGGACATCAGACACAATTACCCTGTGACCAATTGT +
Preference number: 6 (lower is better)
Translates to: LVTLVSNPDETF*DIRHNYPVTNC
Trigger: ACAATTGGTCACAGGGTAATTGTGTCTGATGTCCAAGAAAGTTTCATCTGGGTTCGATACAAGCGTAACGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp TCATCAGCAAAGATAATGAGCTGGTTCTCGTTACGCTaGTATCGAACCCAGATGAAACTTTCTTGGACATCA +
Preference number: 6 (lower is better)
Translates to: SSAKIMSWFSLR*YRTQMKLSWTS
Trigger: TGATGTCCAAGAAAGTTTCATCTGGGTTCGATACAAGCGTAACGAGAACCAGCTCATTATCTTTGCTGATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CCA 72 bp CCCTGTGACCAATTGTCTGGATCCCAGATATGTAATTaGCAATATGCTTATTCTCACACTTTCGAAGTAACT +
Preference number: 6 (lower is better)
Translates to: PCDQLSGSQICN*QYAYSHTFEVT
Trigger: AGTTACTTCGAAAGTGTGAGAATAAGCATATTGCCAATTACATATCTGGGATCCAGACAATTGGTCACAGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS CAA 72 bp TTTCTTGGACATCAGACACAATTACCCTGTGACCAATaGTCTGGATCCCAGATATGTAATTGGCAATATGCT +
Preference number: 6 (lower is better)
Translates to: FLGHQTQLPCDQ*SGSQICNWQYA
Trigger: AGCATATTGCCAATTACATATCTGGGATCCAGACAATTGGTCACAGGGTAATTGTGTCTGATGTCCAAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7
CDS TCA 72 bp ATGGGCAATTTGATACAAGTAATGATTTCCAAATTCTaGCGCCACAAAAAGGAAGCCTGTTTTAAGCACACA +
Preference number: 6 (lower is better)
Translates to: MGNLIQVMISKF*RHKKEACFKHT
Trigger: TGTGTGCTTAAAACAGGCTTCCTTTTTGTGGCGTCAGAATTTGGAAATCATTACTTGTATCAAATTGCCCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042012.7