Pregenerated sensors for SF3A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028902

Ensembl transcript IDs: ENSMUST00000030734.5

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	GTCTTTAAGAACATTTGGTTGGGGAAGCTTTTCTCAGGCTTCTCAGGGAACCGAGTGCTGAAGAGCCTCTaGGCTCGTTCTTCTAGGGTC	+
Preference number: 4 (lower is better) Translates to: VFKNIWLGKLFSGFSGNRVLKSL*ARSSRV Trigger: GACCCTAGAAGAACGAGCTCAGAGGCTCTTCAGCAC...TCGGTTCCCTGAGAAGCCTGAGAAAAGCTTCCCCAACCAAATGTTCTTAAAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030734.5
CDS-3UTR GCA 90 bp	ACTCTGCAATCTGCAAGGTTTCTACAAGGTAGATACTACATAGCAAAAAGTCTTCGCCACTCCGCAAAGTaGCGCTGGAAGGCCTTGGGC	+
Preference number: 4 (lower is better) Translates to: TLQSARFLQGRYYIAKSLRHSAK*RWKALG Trigger: GCCCAAGGCCTTCCAGCGGCACTTTGCGGAGTGGCG...AAGACTTTTTGCTATGTAGTATCTACCTTGTAGAAACCTTGCAGATTGCAGAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030734.5
CDS-3UTR CCA 90 bp	ACTCTGCAATCTGCAAGGTTTCTACAAGGTAGATACTACATAGCAAAAAGTCTTACAGCCAGTAGGGGATaGGCTTGCCGTCCCAGCCCA	+
Preference number: 4 (lower is better) Translates to: TLQSARFLQGRYYIAKSLTASRG*ACRPSP Trigger: TGGGCTGGGACGGCAAGCCCATCCCCTACTGGCTGT...AAGACTTTTTGCTATGTAGTATCTACCTTGTAGAAACCTTGCAGATTGCAGAGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030734.5
CDS-3UTR CCA 90 bp	ATCTCAACTCTGCAATCTGCAAGGTTTCTACAAGGTAGATACTACATAGCAAAAGCTCCTCGCCTGTCCTaGCTTGCTTGCGCTGAACAT	+
Preference number: 4 (lower is better) Translates to: ISTLQSARFLQGRYYIAKAPRLS*LACAEH Trigger: ATGTTCAGCGCAAGCAAGCCAGGACAGGCGAGGAGC...TTTTGCTATGTAGTATCTACCTTGTAGAAACCTTGCAGATTGCAGAGTTGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030734.5
CDS-3UTR TCA 90 bp	ATCTCAACTCTGCAATCTGCAAGGTTTCTACAAGGTAGATACTACATAGCAAAAGAACTCGTTGGGTCCTaGGATAGCATTGAGCTCCTC	+
Preference number: 4 (lower is better) Translates to: ISTLQSARFLQGRYYIAKELVGS*DSIELL Trigger: GAGGAGCTCAATGCTATCTCAGGACCCAACGAGTTC...TTTTGCTATGTAGTATCTACCTTGTAGAAACCTTGCAGATTGCAGAGTTGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030734.5
CDS-3UTR GCA 90 bp	ACTCTGCAATCTGCAAGGTTTCTACAAGGTAGATACTACATAGCAAAAAGTCTTCAGTGTCTCTTTTTGTaGCCTTTGACTTGGGATTTT	+
Preference number: 4 (lower is better) Translates to: TLQSARFLQGRYYIAKSLQCLFL*PLTWDF Trigger: AAAATCCCAAGTCAAAGGGCACAAAAAGAGACACTG...AAGACTTTTTGCTATGTAGTATCTACCTTGTAGAAACCTTGCAGATTGCAGAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030734.5
CDS-3UTR CAA 90 bp	GTCTTTAAGAACATTTGGTTGGGGAAGCTTTTCTCAGGCTTCTCAGGGAACCGAGAGTCAGGGCGCTGCTaGTCTCTTTCGGCCATCCAG	+
Preference number: 5 (lower is better) Translates to: VFKNIWLGKLFSGFSGNRESGRC*SLSAIQ Trigger: CTGGATGGCCGAAAGAGACAAGCAGCGCCCTGACTC...TCGGTTCCCTGAGAAGCCTGAGAAAAGCTTCCCCAACCAAATGTTCTTAAAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030734.5
CDS-3UTR CAA 90 bp	ACTCTGCAATCTGCAAGGTTTCTACAAGGTAGATACTACATAGCAAAAAGTCTTCTCCATGTACCTATCTaGCATGGCCCGAGTGCGGTG	+
Preference number: 5 (lower is better) Translates to: TLQSARFLQGRYYIAKSLLHVPI*HGPSAV Trigger: CACCGCACTCGGGCCATGCAAGATAGGTACATGGAG...AAGACTTTTTGCTATGTAGTATCTACCTTGTAGAAACCTTGCAGATTGCAGAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030734.5
CDS-3UTR CAA 90 bp	GTCTTTAAGAACATTTGGTTGGGGAAGCTTTTCTCAGGCTTCTCAGGGAACCGAATCTCCAGGTATCTTTaGTACTCTGCATTCTTTCTT	+
Preference number: 5 (lower is better) Translates to: VFKNIWLGKLFSGFSGNRISRYL*YSAFFL Trigger: AAGAAAGAATGCAGAGTACAAAAGATACCTGGAGAT...TCGGTTCCCTGAGAAGCCTGAGAAAAGCTTCCCCAACCAAATGTTCTTAAAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030734.5