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Pregenerated sensors for SF3A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002129

Ensembl transcript IDs: ENSMUST00000002198.4

Found 255 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCACCCTTGCCTTCCAGGTCTTTCTCATTCACTGGCCTGCTAGGATaGCTCTGCCTGTCTTGTCTCCTAGTGCACAGGGTAGCAGTGGCT +
Preference number: 1 (lower is better)
Translates to: SPLPSRSFSFTGLLG*LCLSCLLVHRVAVA
Trigger: AGCCACTGCTACCCTGTGCACTAGGAGACAAGACAGGCAGAGTCATCCTAGCAGGCCAGTGAATGAGAAAGACCTGGAAGGCAAGGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 90 bp GGGAAACAAATGCCCAGGCTGTGCCTGAGGCCCCAGGGACACTCCTaGAATTGGTGGTGCAAAGAGGTACAATGGCAAGGTTTCAATTGC +
Preference number: 1 (lower is better)
Translates to: GKQMPRLCLRPQGHS*NWWCKEVQWQGFNC
Trigger: GCAATTGAAACCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTCAGGCACAGCCTGGGCATTTGTTTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 90 bp GACTTCCTGATGCTCCTCCCATACAACAGTACCCCCTCCTCCTCCTaGAAATCCCTCCAGGGGATTTCTGGTGCTACCCAACTAGTCTCT +
Preference number: 1 (lower is better)
Translates to: DFLMLLPYNSTPSSS*KSLQGISGATQLVS
Trigger: AGAGACTAGTTGGGTAGCACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGGGAGGAGCATCAGGAAGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 90 bp CAATGTGTAATGGAGCCAAGTGACTGGTGCTGTAGAGGCCTCGGCTaGGAAAGGAAAAGGTGGAGGGGCTGGGAGTTAGAATACTGCTTC +
Preference number: 1 (lower is better)
Translates to: QCVMEPSDWCCRGLG*ERKRWRGWELEYCF
Trigger: GAAGCAGTATTCTAACTCCCAGCCCCTCCACCTTTTCCTTTCTCAGCCGAGGCCTCTACAGCACCAGTCACTTGGCTCCATTACACATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 90 bp TGGATCAAAGGGCCCATTCACTTGCATTCTACCCAGTCACATTCTTaGTCTCATGTCACAGCCTCAGCCATAGAGGCACTGTGGGGTTTG +
Preference number: 1 (lower is better)
Translates to: WIKGPIHLHSTQSHS*SHVTASAIEALWGL
Trigger: CAAACCCCACAGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAATGCAAGTGAATGGGCCCTTTGATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 90 bp TCCAATCCAGAATTGAAACAAGATATTCATTCCGTAGACTGGCTTTaGGGGAAACAAATGCCCAGGCTGTGCCTGAGGCCCCAGGGACAC +
Preference number: 1 (lower is better)
Translates to: SNPELKQDIHSVDWL*GKQMPRLCLRPQGH
Trigger: GTGTCCCTGGGGCCTCAGGCACAGCCTGGGCATTTGTTTCCCTCAAAGCCAGTCTACGGAATGAATATCTTGTTTCAATTCTGGATTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 90 bp CACACAGCCCAGTCTGGCCTCAAGCTATACAGCCGAGGTGAACATTaGACATTTAATTCTTCTGCCCACACATCCCAAGTCCCAGGATCA +
Preference number: 1 (lower is better)
Translates to: HTAQSGLKLYSRGEH*TFNSSAHTSQVPGS
Trigger: TGATCCTGGGACTTGGGATGTGTGGGCAGAAGAATTAAATGTTCAATGTTCACCTCGGCTGTATAGCTTGAGGCCAGACTGGGCTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 90 bp CTTTGTTTACAGCTTATCAACACACTCTCCACTCTCCCCTCCCTCTaGATACACACAGCAACACCACCCATGCCTCCACAAGACCACAAC +
Preference number: 1 (lower is better)
Translates to: LCLQLINTLSTLPSL*IHTATPPMPPQDHN
Trigger: GTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGGAGAGTGTGTTGATAAGCTGTAAACAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 90 bp GTGGAGGGGCTGGGAGTTAGAATACTGCTTCTGGACTGGGAACTCTaGAGCTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTG +
Preference number: 1 (lower is better)
Translates to: VEGLGVRILLLDWEL*SFQHMQSSKKKPAL
Trigger: CAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAGCTTCAGAGTTCCCAGTCCAGAAGCAGTATTCTAACTCCCAGCCCCTCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 90 bp TCTCCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATaGCTCCACAAGACCACAACTCCAAAAATAATAACCCACATCAGG +
Preference number: 1 (lower is better)
Translates to: SPLSPPSEYTQQHHP*LHKTTTPKIITHIR
Trigger: CCTGATGTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 90 bp ACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTaGATCAAAGGGCCCATTCACTTGCATTCTACCCAGTCACATTCT +
Preference number: 1 (lower is better)
Translates to: TGTHSGILGTVSSRA*IKGPIHLHSTQSHS
Trigger: AGAATGTGACTGGGTAGAATGCAAGTGAATGGGCCCTTTGATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 90 bp CTCCAGGGGATTTCTGGTGCTACCCAACTAGTCTCTAGCACAGTGTaGTTGTTTCAGGCTCCTAAACCAGAAAAGCACACCAACAAACCA +
Preference number: 1 (lower is better)
Translates to: LQGISGATQLVSSTV*LFQAPKPEKHTNKP
Trigger: TGGTTTGTTGGTGTGCTTTTCTGGTTTAGGAGCCTGAAACAAGCACACTGTGCTAGAGACTAGTTGGGTAGCACCAGAAATCCCCTGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 90 bp TCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTGTaGGGTTTGCCAATCTATAGAGGCATATGCCCTGACATAATGCCA +
Preference number: 1 (lower is better)
Translates to: SHSWSHVTASAIEAL*GLPIYRGICPDIMP
Trigger: TGGCATTATGTCAGGGCATATGCCTCTATAGATTGGCAAACCCCACAGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 90 bp AAGAGCGAGGCACATGTTTTGGATTTACTCTTCATCTCTGAGCCATaGGATGGAGGGCATGTGACTTGCCCTAAGTACCTCGAACAAGAA +
Preference number: 1 (lower is better)
Translates to: KSEAHVLDLLFISEP*DGGHVTCPKYLEQE
Trigger: TTCTTGTTCGAGGTACTTAGGGCAAGTCACATGCCCTCCATCCCATGGCTCAGAGATGAAGAGTAAATCCAAAACATGTGCCTCGCTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 90 bp GTACTCACCAAGGCATCTCCCCAGCCACGATGCTTTAGAAGTACTTaGAAGGCACGATGGCAGCAAAAACATATTATAAGCATCAAGACT +
Preference number: 1 (lower is better)
Translates to: VLTKASPQPRCFRST*KARWQQKHIISIKT
Trigger: AGTCTTGATGCTTATAATATGTTTTTGCTGCCATCGTGCCTTTCAAGTACTTCTAAAGCATCGTGGCTGGGGAGATGCCTTGGTGAGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 90 bp TTAGAATACTGCTTCTGGACTGGGAACTCTGAAGCTTTCAGCACATaGAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAAC +
Preference number: 1 (lower is better)
Translates to: LEYCFWTGNSEAFST*SPPKRNQLCLQLIN
Trigger: GTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAGCTTCAGAGTTCCCAGTCCAGAAGCAGTATTCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 90 bp TTGAAAGGCACGATGGCAGCAAAAACATATTATAAGCATCAAGACTaGAGAGACCCCAAAGCTCAGCGATCCATTTGTTTCCCTATTAAT +
Preference number: 1 (lower is better)
Translates to: LKGTMAAKTYYKHQD*RDPKAQRSICFPIN
Trigger: ATTAATAGGGAAACAAATGGATCGCTGAGCTTTGGGGTCTCTGCAGTCTTGATGCTTATAATATGTTTTTGCTGCCATCGTGCCTTTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 90 bp TCACAGGCATGCATGTACTATGCCTGGCTTCAAGAAACCAAAGCATaGTACAAAATGATGAATGGCATTAACCATATTCTATTAACTAAG +
Preference number: 1 (lower is better)
Translates to: SQACMYYAWLQETKA*YKMMNGINHILLTK
Trigger: CTTAGTTAATAGAATATGGTTAATGCCATTCATCATTTTGTATCATGCTTTGGTTTCTTGAAGCCAGGCATAGTACATGCATGCCTGTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CCA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGCCCCAGGGACACTCCTaGAATTGGTGGTGCAAAGAG +
Preference number: 2 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKPQGHS*NWWCKE
Trigger: CTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGG...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCATGGAGCCAAGTGACTaGTGCTGTAGAGGCCTCGGC +
Preference number: 2 (lower is better)
Translates to: RTGTHSGILGTVSSRAWIMEPSD*CCRGLG
Trigger: GCCGAGGCCTCTACAGCACCAGTCACTTGGCTCCAT...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CCA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTGCTGCGGCAAACACATaGAGACCAGAAGACAGCCAT +
Preference number: 2 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGAAANT*RPEDSH
Trigger: ATGGCTGTCTTCTGGTCTCCATGTGTTTGCCGCAGC...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CCA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGCTGATCCTTGTTCTATaGCTACTGCATGGTGGAGGG +
Preference number: 2 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKLILVL*LLHGGG
Trigger: CCCTCCACCATGCAGTAGCCATAGAACAAGGATCAG...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTGGGATGGAGGGCATGTaGCTTGCCCTAAGTACCTCG +
Preference number: 2 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTGMEGM*LALSTS
Trigger: CGAGGTACTTAGGGCAAGTCACATGCCCTCCATCCC...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCACTCTCCCCTCCCTCTaGATACACACAGCAACACCA +
Preference number: 2 (lower is better)
Translates to: RTGTHSGILGTVSSRAWITLPSL*IHTATP
Trigger: TGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGT...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CAA 90 bp CTGGATCAAAGGGCCCATTCACTTGCATTCTACCCAGTCACATTCTaGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTGTGGGGTTT +
Preference number: 2 (lower is better)
Translates to: LDQRAHSLAFYPVTF*VSCHSLSHRGTVGF
Trigger: AAACCCCACAGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAATGCAAGTGAATGGGCCCTTTGATCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAATCTAATGGACTTCCTTaGAGGACCTCCAATCCAGAA +
Preference number: 2 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQSNGLP*RTSNPE
Trigger: TTCTGGATTGGAGGTCCTTCAAGGAAGTCCATTAGA...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGATGGCTACTGCATGGTaGAGGGTCCTGAAGCTTTAC +
Preference number: 2 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRMATAW*RVLKLY
Trigger: GTAAAGCTTCAGGACCCTCCACCATGCAGTAGCCAT...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CAA 90 bp CTCCAATCCAGAATTGAAACAAGATATTCATTCCGTAGACTGGCTTaGAGGGAAACAAATGCCCAGGCTGTGCCTGAGGCCCCAGGGACA +
Preference number: 2 (lower is better)
Translates to: LQSRIETRYSFRRLA*RETNAQAVPEAPGT
Trigger: TGTCCCTGGGGCCTCAGGCACAGCCTGGGCATTTGTTTCCCTCAAAGCCAGTCTACGGAATGAATATCTTGTTTCAATTCTGGATTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CAA 90 bp TCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTGTGGGGTTaGCCAATCTATAGAGGCATATGCCCTGACATAATGCCATGTCCT +
Preference number: 2 (lower is better)
Translates to: SWSHVTASAIEALWG*PIYRGICPDIMPCP
Trigger: AGGACATGGCATTATGTCAGGGCATATGCCTCTATAGATTGGCAAACCCCACAGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGCATGGTGGAGGGTCCTaGAGCTTTACAAATATAAAA +
Preference number: 2 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKHGGGS*SFTNIK
Trigger: TTTTATATTTGTAAAGCTTCAGGACCCTCCACCATG...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR GCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCTCCTGGAATTGGTGGTaGAAAGAGGTACAATGGCAA +
Preference number: 2 (lower is better)
Translates to: RTGTHSGILGTVSSRAWISWNWW*KEVQWQ
Trigger: TTGCCATTGTACCTCTTTGCACCACCAATTCCAGGA...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR GCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTCCAGGATCACAGGCATaGATGTACTATGCCTGGCTT +
Preference number: 2 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTPGSQA*MYYAWL
Trigger: AAGCCAGGCATAGTACATGCATGCCTGTGATCCTGG...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACAAGCCAGTCTGTGGATaGCAGGGACAAACTGCTTCC +
Preference number: 2 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHKPVCG*QGQTAS
Trigger: GGAAGCAGTTTGTCCCTGCCATCCACAGACTGGCTT...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTTTCTCTGAGACTTCCTaGTGCTCCTCCCATACAACA +
Preference number: 2 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTFSETS*CSSHTT
Trigger: TGTTGTATGGGAGGAGCATCAGGAAGTCTCAGAGAA...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCGCGAGGCACATGTTTTaGATTTACTCTTCATCTCTG +
Preference number: 2 (lower is better)
Translates to: RTGTHSGILGTVSSRAWIARHMF*IYSSSL
Trigger: CAGAGATGAAGAGTAAATCCAAAACATGTGCCTCGC...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR GCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGGAAGCTTTCAGCACATaGAGTCCTCCAAAAAGAAAC +
Preference number: 2 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFREAFST*SPPKRN
Trigger: GTTTCTTTTTGGAGGACTGCATGTGCTGAAAGCTTC...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACTGTGAAACTGTCCTGTaGGACAACCCTGGGTATTCA +
Preference number: 2 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHCETVL*DNPGYS
Trigger: TGAATACCCAGGGTTGTCCCACAGGACAGTTTCACA...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CAA 90 bp CAGGGGATTTCTGGTGCTACCCAACTAGTCTCTAGCACAGTGTGCTaGTTTCAGGCTCCTAAACCAGAAAAGCACACCAACAAACCAAAT +
Preference number: 2 (lower is better)
Translates to: QGISGATQLVSSTVC*FQAPKPEKHTNKPN
Trigger: ATTTGGTTTGTTGGTGTGCTTTTCTGGTTTAGGAGCCTGAAACAAGCACACTGTGCTAGAGACTAGTTGGGTAGCACCAGAAATCCCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR GCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACATAGGTGTTCACCCTTaGCTTCCAGGTCTTTCTCAT +
Preference number: 2 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHIGVHP*LPGLSH
Trigger: ATGAGAAAGACCTGGAAGGCAAGGGTGAACACCTAT...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCATCCGTAGACTGGCTTTaGGGGAAACAAATGCCCAGG +
Preference number: 2 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSSVDWL*GKQMPR
Trigger: CCTGGGCATTTGTTTCCCTCAAAGCCAGTCTACGGA...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTCCTCCAATCCAGAATTaGAACAAGATATTCATTCCG +
Preference number: 2 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTPPIQN*NKIFIP
Trigger: CGGAATGAATATCTTGTTTCAATTCTGGATTGGAGG...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACAGCCGAGGTGAACATTaGACATTTAATTCTTCTGCC +
Preference number: 2 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHSRGEH*TFNSSA
Trigger: GGCAGAAGAATTAAATGTTCAATGTTCACCTCGGCT...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACTATGGAAAAAGCTACTaGTCCTTGTTCTATGGCTAC +
Preference number: 2 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHYGKSY*SLFYGY
Trigger: GTAGCCATAGAACAAGGATCAGTAGCTTTTTCCATA...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCATTTACTCTTCATCTCTaGGCCATGGGATGGAGGGCA +
Preference number: 2 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSFTLHL*AMGWRA
Trigger: TGCCCTCCATCCCATGGCTCAGAGATGAAGAGTAAA...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp CAATGTGTTCAAAACCAGCCTAACCTATATAGCAAGTTCCAGTGGAGCTATAACGACAAACTGCTTCCATaGAGGTCCAAGAAGTGTTCG +
Preference number: 2 (lower is better)
Translates to: QCVQNQPNLYSKFQWSYNDKLLP*RSKKCS
Trigger: CGAACACTTCTTGGACCTTCATGGAAGCAGTTTGTC...GTTATAGCTCCACTGGAACTTGCTATATAGGTTAGGCTGGTTTTGAACACATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR GCA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCATCTATAAAGCCATGCTaGGGCAAACACATGGAGACC +
Preference number: 2 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSSIKPC*GKHMET
Trigger: GGTCTCCATGTGTTTGCCGCAGCATGGCTTTATAGA...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR GCA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCATTGTTCTATGGCTACTaGATGGTGGAGGGTCCTGAA +
Preference number: 2 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSLFYGY*MVEGPE
Trigger: TTCAGGACCCTCCACCATGCAGTAGCCATAGAACAA...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp GCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAACACACTGTTTCCCTATTAATTaGCTTGGAATTTCACCCTTG +
Preference number: 2 (lower is better)
Translates to: AHAVLQKETSFVYSLSTHCFPIN*LGISPL
Trigger: CAAGGGTGAAATTCCAAGTCAATTAATAGGGAAACA...GTGTGTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR TCA 90 bp CAATGTGTTCAAAACCAGCCTAACCTATATAGCAAGTTCCAGTGGAGCTATAACCAAGAAACCAAAGCATaGTACAAAATGATGAATGGC +
Preference number: 2 (lower is better)
Translates to: QCVQNQPNLYSKFQWSYNQETKA*YKMMNG
Trigger: GCCATTCATCATTTTGTATCATGCTTTGGTTTCTTG...GTTATAGCTCCACTGGAACTTGCTATATAGGTTAGGCTGGTTTTGAACACATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 72 bp ATGGAGCCAAGTGACTGGTGCTGTAGAGGCCTCGGCTaGGAAAGGAAAAGGTGGAGGGGCTGGGAGTTAGAA +
Preference number: 3 (lower is better)
Translates to: MEPSDWCCRGLG*ERKRWRGWELE
Trigger: TTCTAACTCCCAGCCCCTCCACCTTTTCCTTTCTCAGCCGAGGCCTCTACAGCACCAGTCACTTGGCTCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CAA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAAATGACTCTGCCTGTCTaGTCTCCTAGTGCACAGGGT +
Preference number: 3 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQMTLPV*SPSAQG
Trigger: ACCCTGTGCACTAGGAGACAAGACAGGCAGAGTCAT...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CAA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGCATAGGTGTTCACCCTaGCCTTCCAGGTCTTTCTCA +
Preference number: 3 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKHRCSP*PSRSFS
Trigger: TGAGAAAGACCTGGAAGGCAAGGGTGAACACCTATG...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 72 bp CTGTGCCTGAGGCCCCAGGGACACTCCTGGAATTGGTaGTGCAAAGAGGTACAATGGCAAGGTTTCAATTGC +
Preference number: 3 (lower is better)
Translates to: LCLRPQGHSWNW*CKEVQWQGFNC
Trigger: GCAATTGAAACCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTCAGGCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 72 bp AGGCTGTGCCTGAGGCCCCAGGGACACTCCTGGAATTaGTGGTGCAAAGAGGTACAATGGCAAGGTTTCAAT +
Preference number: 3 (lower is better)
Translates to: RLCLRPQGHSWN*WCKEVQWQGFN
Trigger: ATTGAAACCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTCAGGCACAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CAA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTTCCTTAGGAGAGTTGTaGTGCACTAGCTATCCCTGC +
Preference number: 3 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGSLGEL*CTSYPC
Trigger: GCAGGGATAGCTAGTGCACAACAACTCTCCTAAGGA...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 72 bp TGCCTGAGGCCCCAGGGACACTCCTGGAATTGGTGGTaGAAAGAGGTACAATGGCAAGGTTTCAATTGCAGT +
Preference number: 3 (lower is better)
Translates to: CLRPQGHSWNWW*KEVQWQGFNCS
Trigger: ACTGCAATTGAAACCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTCAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 72 bp GGGCCCATTCACTTGCATTCTACCCAGTCACATTCTTaGTCTCATGTCACAGCCTCAGCCATAGAGGCACTG +
Preference number: 3 (lower is better)
Translates to: GPIHLHSTQSHS*SHVTASAIEAL
Trigger: CAGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAATGCAAGTGAATGGGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 72 bp AAAGGAGCTCTTAGGCATGGATTCTCTGAGACTTCCTaGTGCTCCTCCCATACAACAGTACCCCCTCCTCCT +
Preference number: 3 (lower is better)
Translates to: KGALRHGFSETS*CSSHTTVPPPP
Trigger: AGGAGGAGGGGGTACTGTTGTATGGGAGGAGCATCAGGAAGTCTCAGAGAATCCATGCCTAAGAGCTCCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 72 bp CTACACAAGTGCTTCAACAGGAAGCAGTGTCAAGCTTaGCGGTCCATGCCTTTAATTCCAGCACTTGGGAGG +
Preference number: 3 (lower is better)
Translates to: LHKCFNRKQCQA*RSMPLIPALGR
Trigger: CCTCCCAAGTGCTGGAATTAAAGGCATGGACCGGCAAGCTTGACACTGCTTCCTGTTGAAGCACTTGTGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 72 bp CATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTaGATCAAAGGGCCCATTCACTTGCATTCTACCCAG +
Preference number: 3 (lower is better)
Translates to: HSGILGTVSSRA*IKGPIHLHSTQ
Trigger: CTGGGTAGAATGCAAGTGAATGGGCCCTTTGATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CAA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACGGGACACTCCTGGAATaGGTGGTGCAAAGAGGTACA +
Preference number: 3 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHGTLLE*VVQRGT
Trigger: TGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCC...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 72 bp AATAATCACACAAGGACTCCACAGGTGCTACACAAGTaGTTCAACAGGAAGCAGTGTCAAGCTTGCCGGTCC +
Preference number: 3 (lower is better)
Translates to: NNHTRTPQVLHK*FNRKQCQACRS
Trigger: GGACCGGCAAGCTTGACACTGCTTCCTGTTGAAGCACTTGTGTAGCACCTGTGGAGTCCTTGTGTGATTATT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 72 bp GAAAGGAAAAGGTGGAGGGGCTGGGAGTTAGAATACTaGTTCTGGACTGGGAACTCTGAAGCTTTCAGCACA +
Preference number: 3 (lower is better)
Translates to: ERKRWRGWELEY*FWTGNSEAFST
Trigger: TGTGCTGAAAGCTTCAGAGTTCCCAGTCCAGAAGCAGTATTCTAACTCCCAGCCCCTCCACCTTTTCCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 72 bp AAAAGGTGGAGGGGCTGGGAGTTAGAATACTGCTTCTaGACTGGGAACTCTGAAGCTTTCAGCACATGCAGT +
Preference number: 3 (lower is better)
Translates to: KRWRGWELEYCF*TGNSEAFSTCS
Trigger: ACTGCATGTGCTGAAAGCTTCAGAGTTCCCAGTCCAGAAGCAGTATTCTAACTCCCAGCCCCTCCACCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 72 bp TCCCCTCCCTCTGAATACACACAGCAACACCACCCATaGCTCCACAAGACCACAACTCCAAAAATAATAACC +
Preference number: 3 (lower is better)
Translates to: SPPSEYTQQHHP*LHKTTTPKIIT
Trigger: GGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 72 bp GTAAGAATGGCAGAGCTTTCTAAGCCAGTCTGTGGATaGCAGGGACAAACTGCTTCCATGAAGGTCCAAGAA +
Preference number: 3 (lower is better)
Translates to: VRMAELSKPVCG*QGQTASMKVQE
Trigger: TTCTTGGACCTTCATGGAAGCAGTTTGTCCCTGCCATCCACAGACTGGCTTAGAAAGCTCTGCCATTCTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CAA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTACCTCCAATCCAGAATaGAAACAAGATATTCATTCC +
Preference number: 3 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGTSNPE*KQDIHS
Trigger: GGAATGAATATCTTGTTTCAATTCTGGATTGGAGGT...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 72 bp CAGTCTGGCCTCAAGCTATACAGCCGAGGTGAACATTaGACATTTAATTCTTCTGCCCACACATCCCAAGTC +
Preference number: 3 (lower is better)
Translates to: QSGLKLYSRGEH*TFNSSAHTSQV
Trigger: GACTTGGGATGTGTGGGCAGAAGAATTAAATGTTCAATGTTCACCTCGGCTGTATAGCTTGAGGCCAGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 72 bp CCTCGAACAAGAATAATCACACAAGGACTCCACAGGTaGTACACAAGTGCTTCAACAGGAAGCAGTGTCAAG +
Preference number: 3 (lower is better)
Translates to: PRTRIITQGLHR*YTSASTGSSVK
Trigger: CTTGACACTGCTTCCTGTTGAAGCACTTGTGTAGCACCTGTGGAGTCCTTGTGTGATTATTCTTGTTCGAGG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR-3UTR CAA 90 bp GCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAACACACTTCCGTAGACTGGCTTaGAGGGAAACAAATGCCCAG +
Preference number: 3 (lower is better)
Translates to: AHAVLQKETSFVYSLSTHFRRLA*RETNAQ
Trigger: CTGGGCATTTGTTTCCCTCAAAGCCAGTCTACGGAA...GTGTGTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 72 bp CTGGGAGTTAGAATACTGCTTCTGGACTGGGAACTCTaGAGCTTTCAGCACATGCAGTCCTCCAAAAAGAAA +
Preference number: 3 (lower is better)
Translates to: LGVRILLLDWEL*SFQHMQSSKKK
Trigger: TTTCTTTTTGGAGGACTGCATGTGCTGAAAGCTTCAGAGTTCCCAGTCCAGAAGCAGTATTCTAACTCCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 72 bp TGCTTCTGGACTGGGAACTCTGAAGCTTTCAGCACATaGAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAG +
Preference number: 3 (lower is better)
Translates to: CFWTGNSEAFST*SPPKRNQLCLQ
Trigger: CTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAGCTTCAGAGTTCCCAGTCCAGAAGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 72 bp ATCCCAAGTCCCAGGATCACAGGCATGCATGTACTATaGCTGGCTTCAAGAAACCAAAGCATGATACAAAAT +
Preference number: 3 (lower is better)
Translates to: IPSPRITGMHVL*LASRNQSMIQN
Trigger: ATTTTGTATCATGCTTTGGTTTCTTGAAGCCAGGCATAGTACATGCATGCCTGTGATCCTGGGACTTGGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CCA 72 bp CTGCTATGCCTATCAAGTGATGGGCGATTTGAGGTATaGAAAAAGCTACTGATCCTTGTTCTATGGCTACTG +
Preference number: 3 (lower is better)
Translates to: LLCLSSDGRFEV*KKLLILVLWLL
Trigger: CAGTAGCCATAGAACAAGGATCAGTAGCTTTTTCCATACCTCAAATCGCCCATCACTTGATAGGCATAGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 72 bp CCCAAAGCTCAGCGATCCATTTGTTTCCCTATTAATTaGCTTGGAATTTCACCCTTGTCCTTAGGAGAGTTG +
Preference number: 3 (lower is better)
Translates to: PKAQRSICFPIN*LGISPLSLGEL
Trigger: CAACTCTCCTAAGGACAAGGGTGAAATTCCAAGTCAATTAATAGGGAAACAAATGGATCGCTGAGCTTTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 72 bp ACGATGGCAGCAAAAACATATTATAAGCATCAAGACTaGAGAGACCCCAAAGCTCAGCGATCCATTTGTTTC +
Preference number: 3 (lower is better)
Translates to: TMAAKTYYKHQD*RDPKAQRSICF
Trigger: GAAACAAATGGATCGCTGAGCTTTGGGGTCTCTGCAGTCTTGATGCTTATAATATGTTTTTGCTGCCATCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR GCA 72 bp GATAAGCACTTTTTAAACTTACAAGACTGTAGGACATaGAGTGCTAGAAAACAATCTTGGTCTGTGGCCACC +
Preference number: 3 (lower is better)
Translates to: DKHFLNLQDCRT*SARKQSWSVAT
Trigger: GGTGGCCACAGACCAAGATTGTTTTCTAGCACTGCATGTCCTACAGTCTTGTAAGTTTAAAAAGTGCTTATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 72 bp ATCCTTGTTCTATGGCTACTGCATGGTGGAGGGTCCTaGAGCTTTACAAATATAAAACGTACAAATATAGAA +
Preference number: 3 (lower is better)
Translates to: ILVLWLLHGGGS*SFTNIKRTNIE
Trigger: TTCTATATTTGTACGTTTTATATTTGTAAAGCTTCAGGACCCTCCACCATGCAGTAGCCATAGAACAAGGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR TCA 72 bp TGCATGTACTATGCCTGGCTTCAAGAAACCAAAGCATaGTACAAAATGATGAATGGCATTAACCATATTCTA +
Preference number: 3 (lower is better)
Translates to: CMYYAWLQETKA*YKMMNGINHIL
Trigger: TAGAATATGGTTAATGCCATTCATCATTTTGTATCATGCTTTGGTTTCTTGAAGCCAGGCATAGTACATGCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGGGTGCGGACTGGAGGTaGCATCGCAGGTGGCCGGGG +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRGADWR*HRRWPG
Trigger: CCCCGGCCACCTGCGATGCCACCTCCAGTCCGCACC...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGAGGAGGCATTGGAGCTaGGGCTGGGACTGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKRRHWS*GWDWSH
Trigger: GTGGCTCCAGTCCCAGCCCCAGCTCCAATGCCTCCT...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTCCGGGCCATGCTGCCTaGATGGCCATCCCAAGTCAC +
Preference number: 4 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGPGHAA*MAIPSH
Trigger: GTGACTTGGGATGGCCATTCAGGCAGCATGGCCCGG...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTGTGGGCGGGGCGCCATaGTGGGAGGTGCTGCAGGAG +
Preference number: 4 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTVGGAP*WEVLQE
Trigger: CTCCTGCAGCACCTCCCATCATGGCGCCCCGCCCAC...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCGCTGGGTCCGGGCCATaGTGCCTGAATGGCCATCCC +
Preference number: 4 (lower is better)
Translates to: RTGTHSGILGTVSSRAWIAGSGP*CLNGHP
Trigger: GGGATGGCCATTCAGGCAGCATGGCCCGGACCCAGC...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CACTCTCCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCGTATCCTGGTCCAGCTaGGAAGGAGTCTCCTCGGCC +
Preference number: 4 (lower is better)
Translates to: HSPLSPPSEYTQQHHPCLVSWSS*EGVSSA
Trigger: GGCCGAGGAGACTCCTTCCCAGCTGGACCAGGATAC...GAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGGAGAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp GAGGCCCCAGGGACACTCCTGGAATTGGTGGTGCAAAGAGGTACAATGGCAAGGGGAGGTGGTGGCTGCTaGGGGATTTCATTGGGCTTG +
Preference number: 4 (lower is better)
Translates to: EAPGTLLELVVQRGTMARGGGGC*GISLGL
Trigger: CAAGCCCAATGAAATCCCTCAGCAGCCACCACCTCC...CCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTTGGGGCAGCTGCTGTTaGGTAGCTTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGWGSCC*VACCCC
Trigger: GCAGCAGCAGCAAGCTACGCAACAGCAGCTGCCCCA...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACCATGGGGGCAATCACTaGGCCTGGGGGCAGCCGGAC +
Preference number: 4 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHHGGNH*AWGQPD
Trigger: GTCCGGCTGCCCCCAGGCTCAGTGATTGCCCCCATG...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTACCTTCTGGGGCAGCTaGTGTTGCGTAGCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGTFWGS*CCVACC
Trigger: GCAGCAAGCTACGCAACAGCAGCTGCCCCAGAAGGT...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACATGGAGCGGTCCCGCTaGTCCAGCCAGCGGGGGTCA +
Preference number: 4 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHMERSR*SSQRGS
Trigger: TGACCCCCGCTGGCTGGAGCAGCGGGACCGCTCCAT...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGGGGTCCGGGCCATGCTaGCTGAATGGCCATCCCAAG +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRGSGPC*LNGHPK
Trigger: CTTGGGATGGCCATTCAGGCAGCATGGCCCGGACCC...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTCGCCATGATGGGAGGTaGTGCAGGAGGCATAGGTAC +
Preference number: 4 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGRHDGR*CRRHRY
Trigger: GTACCTATGCCTCCTGCAGCACCTCCCATCATGGCG...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCCCGGCACCAGGCCCTTaGCCTTATGGATGGCCTCAA +
Preference number: 4 (lower is better)
Translates to: RTGTHSGILGTVSSRAWIPAPGP*PYGWPQ
Trigger: TTGAGGCCATCCATAAGGCCAAGGGCCTGGTGCCGG...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CACTCTCCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCTGCAGATACAACAGTaGTGCGGACTGGAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: HSPLSPPSEYTQQHHPCLLQIQQ*CGLEVA
Trigger: TGCCACCTCCAGTCCGCACCACTGTTGTATCTGCAG...GAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGGAGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCGGGGATATTGGTGGCTaGAGATGGAGGTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: RTGTHSGILGTVSSRAWIGDIGG*RWRWWL
Trigger: CAGCCACCACCTCCATCTTCAGCCACCAATATCCCC...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAAGCTTGCTGCTGCTGCTaGATAACCTTGGGGATGGCA +
Preference number: 4 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQACCCC*ITLGMA
Trigger: TGCCATCCCCAAGGTTATGCAGCAGCAGCAGCAAGC...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGAGCCCAATGCGCATGTaGTCCTGCATTTTGCTGGCA +
Preference number: 4 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKSPMRM*SCILLA
Trigger: TGCCAGCAAAATGCAGGAGCACATGCGCATTGGGCT...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CACTCTCCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCACCTCATCATCACTCTaGTTCTCTCGGATGGAGCGG +
Preference number: 4 (lower is better)
Translates to: HSPLSPPSEYTQQHHPCLTSSSL*FSRMER
Trigger: CCGCTCCATCCGAGAGAAGCAGAGTGATGATGAGGT...GAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGGAGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTCAGCCGGACCACAGATaGCATGGGTGGCCGAGGCAT +
Preference number: 4 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTQPDHR*HGWPRH
Trigger: ATGCCTCGGCCACCCATGGCATCTGTGGTCCGGCTG...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTCATGATGGGAGGTGCTaGAGGAGGCATAGGTACCAC +
Preference number: 4 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGHDGRC*RRHRYH
Trigger: GTGGTACCTATGCCTCCTGCAGCACCTCCCATCATG...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGTGCCGACCACTGGCTTaGAAGGGGTGGGATCCTCCT +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRCRPLA*KGWDPP
Trigger: AGGAGGATCCCACCCCTTCCAAGCCAGTGGTCGGCA...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGAGCTCCCAGTTCCTCTaGTGTTGTTGGGGGTGGAAA +
Preference number: 4 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKSSQFL*CCWGWK
Trigger: TTTCCACCCCCAACAACACCAGAGGAACTGGGAGCT...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCGCCTCAATCTGCTCCTaGAGGGTGATGTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: RTGTHSGILGTVSSRAWIASICS*RVMLAW
Trigger: CCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGC...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGCCGCAGGCATGCCCGTaGCTTCATGAATCTTCACTT +
Preference number: 4 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKPQACP*LHESSL
Trigger: AAGTGAAGATTCATGAAGCCACGGGCATGCCTGCGG...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CAA 72 bp CAGGCTGTGCCTGAGGCCCCAGGGACACTCCTGGAATaGGTGGTGCAAAGAGGTACAATGGCAAGGTTTCAA +
Preference number: 4 (lower is better)
Translates to: QAVPEAPGTLLE*VVQRGTMARFQ
Trigger: TTGAAACCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTCAGGCACAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAATCCATGTCCTGTACTTaGGTATCCTGGTCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQSMSCT*VSWSSW
Trigger: CCAGCTGGACCAGGATACTCAAGTACAGGACATGGA...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CACTCTCCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCATGCGCATGTGCTCCTaGATTTTGCTGGCAGGAATC +
Preference number: 4 (lower is better)
Translates to: HSPLSPPSEYTQQHHPCLMRMCS*ILLAGI
Trigger: GATTCCTGCCAGCAAAATGCAGGAGCACATGCGCAT...GAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGGAGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp GAGGCCCCAGGGACACTCCTGGAATTGGTGGTGCAAAGAGGTACAATGGCAAGGGGATTTCATTGGGCTTaGTGGGGCCAATCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: EAPGTLLELVVQRGTMARGFHWA*WGQSSP
Trigger: AGGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCC...CCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCCACAATGACTTGGTCTaGTGTTGGGGGCAGAGGTGG +
Preference number: 4 (lower is better)
Translates to: RTGTHSGILGTVSSRAWIHNDLV*CWGQRW
Trigger: CCACCTCTGCCCCCAACACCAGACCAAGTCATTGTG...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAATTCCGCACAATGACTTaGTCTGGTGTTGGGGGCAGA +
Preference number: 4 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQFRTMT*SGVGGR
Trigger: TCTGCCCCCAACACCAGACCAAGTCATTGTGCGGAA...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTGGGGCTTGGAAGCTTTaGGATCATAGTCCTTCCGCA +
Preference number: 4 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGGAWKL*DHSPSA
Trigger: TGCGGAAGGACTATGATCCCAAAGCTTCCAAGCCCC...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAAGCTGAGGGATTTCATTaGGCTTGCTGGGGCCAATCT +
Preference number: 4 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQAEGFH*ACWGQS
Trigger: AGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAGC...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAAAGGCACAAAGGCTGTTaGCACAATCATGGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQRHKGC*HNHGRW
Trigger: CCACCTCCCATGATTGTGCCAACAGCCTTTGTGCCT...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACCATTGGAGCTGGGGCTaGGACTGGAGCCACAGGTGG +
Preference number: 4 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHHWSWG*DWSHRW
Trigger: CCACCTGTGGCTCCAGTCCCAGCCCCAGCTCCAATG...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGCACTTTGATGGATACTaGACCCTTGTTCCTGCGCAG +
Preference number: 4 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKHFDGY*TLVPAQ
Trigger: CTGCGCAGGAACAAGGGTCCAGTATCCATCAAAGTG...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAACCTTGCTCATTGGGTTaGAAATCCACTGTCTCCACC +
Preference number: 4 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQPCSLG*KSTVST
Trigger: GGTGGAGACAGTGGATTTTCAACCCAATGAGCAAGG...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CACTCTCCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCATTCCGTCTTATCCTaGATGTTGGGTACCTGCACT +
Preference number: 4 (lower is better)
Translates to: HSPLSPPSEYTQQHHPCLHSVLS*MLGTCT
Trigger: AGTGCAGGTACCCAACATGCAGGATAAGACGGAATG...GAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGGAGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGGCCATGCTGCCTGAATaGCCATCCCAAGTCACCTTC +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRAMLPE*PSQVTF
Trigger: GAAGGTGACTTGGGATGGCCATTCAGGCAGCATGGC...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGTCCTCGGCCTTCTCCTaGTCTTCCTCATCTGACTCA +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRSSAFS*SSSSDS
Trigger: TGAGTCAGATGAGGAAGATCAGGAGAAGGCCGAGGA...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp GAGGCCCCAGGGACACTCCTGGAATTGGTGGTGCAAAGAGGTACAATGGCAAGGCCAACTGCTTTAAGCTaGTCTCAATATCCAGACCTG +
Preference number: 4 (lower is better)
Translates to: EAPGTLLELVVQRGTMARPTALS*SQYPDL
Trigger: CAGGTCTGGATATTGAGAGCAGCTTAAAGCAGTTGG...CCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTCTGGCTTGGAAGGGGTaGGATCCTCCTTTGACGATG +
Preference number: 4 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTLAWKG*DPPLTM
Trigger: CATCGTCAAAGGAGGATCCCACCCCTTCCAAGCCAG...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGAATAATGCCGACCACTaGCTTGGAAGGGGTGGGATC +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRNNADH*LGRGGI
Trigger: GATCCCACCCCTTCCAAGCCAGTGGTCGGCATTATT...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCTTGAAGAGGCTGTGCTaGGGTCGGAGAAAGTCAAAC +
Preference number: 4 (lower is better)
Translates to: RTGTHSGILGTVSSRAWILKRLC*GRRKSN
Trigger: GTTTGACTTTCTCCGACCCCAGCACAGCCTCTTCAA...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGCCTTGGCCTTATGGATaGCCTCAATCTGCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRPWPYG*PQSAPG
Trigger: TCCAGGAGCAGATTGAGGCCATCCATAAGGCCAAGG...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp TCTATGGCTACTGCATGGTGGAGGGTCCTGAAGCTTTACAAATATAAAACGTACGCAGCTGAGGGCTCCTaGGCCTTCCCCTCCTTGAAC +
Preference number: 4 (lower is better)
Translates to: SMATAWWRVLKLYKYKTYAAEGS*AFPSLN
Trigger: GTTCAAGGAGGGGAAGGCTCAGGAGCCCTCAGCTGC...GTACGTTTTATATTTGTAAAGCTTCAGGACCCTCCACCATGCAGTAGCCATAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTTTCCTCTCACGTTCCTaGAATTTGGCCCATTCTACT +
Preference number: 4 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGFLSRS*NLAHST
Trigger: AGTAGAATGGGCCAAATTTCAGGAACGTGAGAGGAA...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCGGTGGAGGCACTTTCTaGCCTTCTTCTTCATCATCT +
Preference number: 4 (lower is better)
Translates to: RTGTHSGILGTVSSRAWIGGGTF*PSSSSS
Trigger: AGATGATGAAGAAGAAGGGCAGAAAGTGCCTCCACC...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CAATGTGTTCAAAACCAGCCTAACCTATATAGCAAGTTCCAGTGGAGCTATAACGCTGTTTGGACTCAGTaGCTACTGGCGGCGGCGGGG +
Preference number: 4 (lower is better)
Translates to: QCVQNQPNLYSKFQWSYNAVWTQ*LLAAAG
Trigger: CCCCGCCGCCGCCAGTAGCCACTGAGTCCAAACAGC...GTTATAGCTCCACTGGAACTTGCTATATAGGTTAGGCTGGTTTTGAACACATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGCTTCAATTGGCTGTTTaGACTCAGTGGCTACTGGCG +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRLQLAV*TQWLLA
Trigger: CGCCAGTAGCCACTGAGTCCAAACAGCCAATTGAAG...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTACTGACGCCCATTCCTaGCCACAAACTGAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTTDAHS*PQTELS
Trigger: TGACAGCTCAGTTTGTGGCCAGGAATGGGCGTCAGT...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAAGGGTGATGTTGGCCTaGGCAGCCTGCTGGGTCCGG +
Preference number: 4 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSRVMLA*AACWVR
Trigger: CCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCT...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTAGCTGGGGATATTGGTaGCTGAAGATGGAGGTGGTG +
Preference number: 4 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTSWGYW*LKMEVV
Trigger: CACCACCTCCATCTTCAGCCACCAATATCCCCAGCT...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp GCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAACACACCACAATCATGGGAGGTaGGCGGGGCGCCATGATGGG +
Preference number: 4 (lower is better)
Translates to: AHAVLQKETSFVYSLSTHHNHGR*AGRHDG
Trigger: CCCATCATGGCGCCCCGCCCACCTCCCATGATTGTG...GTGTGTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CAA 72 bp GCTACACAAGTGCTTCAACAGGAAGCAGTGTCAAGCTaGCCGGTCCATGCCTTTAATTCCAGCACTTGGGAG +
Preference number: 4 (lower is better)
Translates to: ATQVLQQEAVSS*PVHAFNSSTWE
Trigger: CTCCCAAGTGCTGGAATTAAAGGCATGGACCGGCAAGCTTGACACTGCTTCCTGTTGAAGCACTTGTGTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAAAAGATCTTGGTATACTaGTCCACCAGCTTTGTGAAG +
Preference number: 4 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQKILVY*STSFVK
Trigger: CTTCACAAAGCTGGTGGAGCAGTATACCAAGATCTT...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGTTCTGGCCACAAAACTaGCAGTCTTGTCGACGATGT +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRFWPQN*QSCRRC
Trigger: ACATCGTCGACAAGACTGCCAGTTTTGTGGCCAGAA...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGATTCAGGCCCATTTCTaGCCACAAAACTGGCAGTCT +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRIQAHF*PQNWQS
Trigger: AGACTGCCAGTTTTGTGGCCAGAAATGGGCCTGAAT...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACGGTACTATGGTCTCTTaGATCACCTGGGCTTGGACC +
Preference number: 4 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHGTMVS*ITWAWT
Trigger: GGTCCAAGCCCAGGTGATCCAAGAGACCATAGTACC...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp GCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAACACACTCTGCTTCTCTCGGATaGAGCGGTCCCGCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: AHAVLQKETSFVYSLSTHSASLG*SGPAAP
Trigger: TGGAGCAGCGGGACCGCTCCATCCGAGAGAAGCAGA...GTGTGTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTGGTGGGATCCTCCTTTaGCGATGCTTCTTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTGGILL*RCFFFN
Trigger: ATTGAAGAAGAAGCATCGTCAAAGGAGGATCCCACC...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACTTCCTGGCCACAAACTaGGCTGTCAGCTTCACTACA +
Preference number: 4 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHFLATN*AVSFTT
Trigger: TGTAGTGAAGCTGACAGCTCAGTTTGTGGCCAGGAA...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTCGTCGCTCAGCCAACTaGTTTAAGCTGCTCTCAATA +
Preference number: 4 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTRRSAN*FKLLSI
Trigger: TATTGAGAGCAGCTTAAAGCAGTTGGCTGAGCGACG...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGTGGTGTTGTTGGGGGTaGAAAGTTTCCTTGCTCATT +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRWCCWG*KVSLLI
Trigger: AATGAGCAAGGAAACTTTCCACCCCCAACAACACCA...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp TCTATGGCTACTGCATGGTGGAGGGTCCTGAAGCTTTACAAATATAAAACGTACGACTTGGTCTGGTGTTaGGGGCAGAGGTGGAGGCAT +
Preference number: 4 (lower is better)
Translates to: SMATAWWRVLKLYKYKTYDLVWC*GQRWRH
Trigger: ATGCCTCCACCTCTGCCCCCAACACCAGACCAAGTC...GTACGTTTTATATTTGTAAAGCTTCAGGACCCTCCACCATGCAGTAGCCATAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp GCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAACACACCACAGATGCCATGGGTaGCCGAGGCATGACAGGTAC +
Preference number: 4 (lower is better)
Translates to: AHAVLQKETSFVYSLSTHHRCHG*PRHDRY
Trigger: GTACCTGTCATGCCTCGGCCACCCATGGCATCTGTG...GTGTGTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAGACTGGAGCCACAGGTaGGGCAGGCACAAAGGCTGT +
Preference number: 4 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSDWSHR*GRHKGC
Trigger: ACAGCCTTTGTGCCTGCCCCACCTGTGGCTCCAGTC...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp TCTATGGCTACTGCATGGTGGAGGGTCCTGAAGCTTTACAAATATAAAACGTACGACCTGGTCTGTGAGTaGGAGAGTGAAGACCAGCCC +
Preference number: 4 (lower is better)
Translates to: SMATAWWRVLKLYKYKTYDLVCE*ESEDQP
Trigger: GGGCTGGTCTTCACTCTCCCACTCACAGACCAGGTC...GTACGTTTTATATTTGTAAAGCTTCAGGACCCTCCACCATGCAGTAGCCATAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CAA 72 bp GGACAGCAGTTAGTGACCAAGAGCGAGGCACATGTTTaGGATTTACTCTTCATCTCTGAGCCATGGGATGGA +
Preference number: 4 (lower is better)
Translates to: GQQLVTKSEAHV*DLLFISEPWDG
Trigger: TCCATCCCATGGCTCAGAGATGAAGAGTAAATCCAAAACATGTGCCTCGCTCTTGGTCACTAACTGCTGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAAGCTGGGTCAGAAACTaGCGCCCATTCCTGGCCACA +
Preference number: 4 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSSWVRN*RPFLAT
Trigger: TGTGGCCAGGAATGGGCGTCAGTTTCTGACCCAGCT...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCACGTAGCGCTCCTGAATaGGGATCCGAGCTCCCAGTT +
Preference number: 4 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSRSAPE*GSELPV
Trigger: AACTGGGAGCTCGGATCCTCATTCAGGAGCGCTACG...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTTGCATGTTGGGTACCTaGACTTTGATGGATACTGGA +
Preference number: 4 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTCMLGT*TLMDTG
Trigger: TCCAGTATCCATCAAAGTGCAGGTACCCAACATGCA...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CAATGTGTTCAAAACCAGCCTAACCTATATAGCAAGTTCCAGTGGAGCTATAACGTCTCTTGGATCACCTaGGCTTGGACCTTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: QCVQNQPNLYSKFQWSYNVSWIT*AWTFWG
Trigger: GCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGAC...GTTATAGCTCCACTGGAACTTGCTATATAGGTTAGGCTGGTTTTGAACACATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGCAATCTTCTTACCAATaGCTGTCTCTTCTACCCCAA +
Preference number: 4 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRQSSYQ*LSLLPQ
Trigger: TTGGGGTAGAAGAGACAGCCATTGGTAAGAAGATTG...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAGTGAAGACCAGCCCCTaGCCATTCAGCTTCCATTCC +
Preference number: 4 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSVKTSP*PFSFHS
Trigger: GGAATGGAAGCTGAATGGTCAGGGGCTGGTCTTCAC...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp GCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAACACACTGGATGGCCTCAATCTaGTCCTGGAGGGTGATGTTG +
Preference number: 4 (lower is better)
Translates to: AHAVLQKETSFVYSLSTHWMASI*SWRVML
Trigger: CAACATCACCCTCCAGGAGCAGATTGAGGCCATCCA...GTGTGTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp TCTATGGCTACTGCATGGTGGAGGGTCCTGAAGCTTTACAAATATAAAACGTACCACATTGATCCTGGGTaGGTGGATGATGGGTGGCAT +
Preference number: 4 (lower is better)
Translates to: SMATAWWRVLKLYKYKTYHIDPG*VDDGWH
Trigger: ATGCCACCCATCATCCACGCACCCAGGATCAATGTG...GTACGTTTTATATTTGTAAAGCTTCAGGACCCTCCACCATGCAGTAGCCATAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CAATGTGTTCAAAACCAGCCTAACCTATATAGCAAGTTCCAGTGGAGCTATAACAGGCCCTTGGCCTTATaGATGGCCTCAATCTGCTCC +
Preference number: 4 (lower is better)
Translates to: QCVQNQPNLYSKFQWSYNRPLAL*MASICS
Trigger: GGAGCAGATTGAGGCCATCCATAAGGCCAAGGGCCT...GTTATAGCTCCACTGGAACTTGCTATATAGGTTAGGCTGGTTTTGAACACATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAATCCTCCATAGGAGGTaGGGGGTGTACAGGAGGCAT +
Preference number: 4 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSILHRR*GVYRRH
Trigger: ATGCCTCCTGTACACCCCCCACCTCCTATGGAGGAT...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
3UTR CAA 72 bp AGAATTGAAACAAGATATTCATTCCGTAGACTGGCTTaGAGGGAAACAAATGCCCAGGCTGTGCCTGAGGCC +
Preference number: 4 (lower is better)
Translates to: RIETRYSFRRLA*RETNAQAVPEA
Trigger: GGCCTCAGGCACAGCCTGGGCATTTGTTTCCCTCAAAGCCAGTCTACGGAATGAATATCTTGTTTCAATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACCTCAATATCCAGACCTaGTGCATAAACCTCATCATC +
Preference number: 4 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHLNIQT*CINLII
Trigger: GATGATGAGGTTTATGCACCAGGTCTGGATATTGAG...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CCA 90 bp GCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAACACACCGGTCTTTAGTTTCTTaGATGGAGGCTCATCCTCCA +
Preference number: 4 (lower is better)
Translates to: AHAVLQKETSFVYSLSTHRSLVS*MEAHPP
Trigger: TGGAGGATGAGCCTCCATCCAAGAAACTAAAGACCG...GTGTGTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CAATGTGTTCAAAACCAGCCTAACCTATATAGCAAGTTCCAGTGGAGCTATAACGAATCTTCTCCCCAGTaGTGGGGGATACAAGATACT +
Preference number: 4 (lower is better)
Translates to: QCVQNQPNLYSKFQWSYNESSPQ*WGIQDT
Trigger: AGTATCTTGTATCCCCCATCACTGGGGAGAAGATTC...GTTATAGCTCCACTGGAACTTGCTATATAGGTTAGGCTGGTTTTGAACACATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR GCA 90 bp GCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAACACACAGTCAAACTGGTAGTTaGGCTGCTCTTTCTGCATCA +
Preference number: 4 (lower is better)
Translates to: AHAVLQKETSFVYSLSTHSQTGS*AALSAS
Trigger: TGATGCAGAAAGAGCAGCGCAACTACCAGTTTGACT...GTGTGTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR TCA 90 bp CAATGTGTTCAAAACCAGCCTAACCTATATAGCAAGTTCCAGTGGAGCTATAACATGCCCGTGGCTTCATaGATCTTCACTTTGATGACA +
Preference number: 4 (lower is better)
Translates to: QCVQNQPNLYSKFQWSYNMPVAS*IFTLMT
Trigger: TGTCATCAAAGTGAAGATTCATGAAGCCACGGGCAT...GTTATAGCTCCACTGGAACTTGCTATATAGGTTAGGCTGGTTTTGAACACATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 90 bp ATTGATCCTGGGTGCGTGGATGATGGGTGGCATGGGGGCAATCACTaGGCCTGGGGGCAGCCGGACCACAGATGCCATGGGTGGCCGAGG +
Preference number: 5 (lower is better)
Translates to: IDPGCVDDGWHGGNH*AWGQPDHRCHGWPR
Trigger: CCTCGGCCACCCATGGCATCTGTGGTCCGGCTGCCCCCAGGCTCAGTGATTGCCCCCATGCCACCCATCATCCACGCACCCAGGATCAAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 90 bp AGCCTGGGGGCAGCCGGACCACAGATGCCATGGGTGGCCGAGGCATaGCAGGTACTGCAGATACAACAGTGGTGCGGACTGGAGGTGGCA +
Preference number: 5 (lower is better)
Translates to: SLGAAGPQMPWVAEA*QVLQIQQWCGLEVA
Trigger: TGCCACCTCCAGTCCGCACCACTGTTGTATCTGCAGTACCTGTCATGCCTCGGCCACCCATGGCATCTGTGGTCCGGCTGCCCCCAGGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 90 bp ATGGCCTCAATCTGCTCCTGGAGGGTGATGTTGGCCTGGGCAGCCTaGTGGGTCCGGGCCATGCTGCCTGAATGGCCATCCCAAGTCACC +
Preference number: 5 (lower is better)
Translates to: MASICSWRVMLAWAA*WVRAMLPEWPSQVT
Trigger: GGTGACTTGGGATGGCCATTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 90 bp TCATCTTCCGGCACCAGGCCCTTGGCCTTATGGATGGCCTCAATCTaGTCCTGGAGGGTGATGTTGGCCTGGGCAGCCTGCTGGGTCCGG +
Preference number: 5 (lower is better)
Translates to: SSSGTRPLALWMASI*SWRVMLAWAACWVR
Trigger: CCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATCCATAAGGCCAAGGGCCTGGTGCCGGAAGATGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 90 bp GCCTCAATCTGCTCCTGGAGGGTGATGTTGGCCTGGGCAGCCTGCTaGGTCCGGGCCATGCTGCCTGAATGGCCATCCCAAGTCACCTTC +
Preference number: 5 (lower is better)
Translates to: ASICSWRVMLAWAAC*VRAMLPEWPSQVTF
Trigger: GAAGGTGACTTGGGATGGCCATTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 90 bp GCCTTATGGATGGCCTCAATCTGCTCCTGGAGGGTGATGTTGGCCTaGGCAGCCTGCTGGGTCCGGGCCATGCTGCCTGAATGGCCATCC +
Preference number: 5 (lower is better)
Translates to: ALWMASICSWRVMLA*AACWVRAMLPEWPS
Trigger: GGATGGCCATTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATCCATAAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 90 bp CAGCCGGACCACAGATGCCATGGGTGGCCGAGGCATGACAGGTACTaGAGATACAACAGTGGTGCGGACTGGAGGTGGCATCGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: QPDHRCHGWPRHDRY*RYNSGADWRWHRRW
Trigger: CCACCTGCGATGCCACCTCCAGTCCGCACCACTGTTGTATCTGCAGTACCTGTCATGCCTCGGCCACCCATGGCATCTGTGGTCCGGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 90 bp TGGCACAATCATGGGAGGTGGGCGGGGCGCCATGATGGGAGGTGCTaGAGGAGGCATAGGTACCACATTGATCCTGGGTGCGTGGATGAT +
Preference number: 5 (lower is better)
Translates to: WHNHGRWAGRHDGRC*RRHRYHIDPGCVDD
Trigger: ATCATCCACGCACCCAGGATCAATGTGGTACCTATGCCTCCTGCAGCACCTCCCATCATGGCGCCCCGCCCACCTCCCATGATTGTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 90 bp TGTTGGCACAATCATGGGAGGTGGGCGGGGCGCCATGATGGGAGGTaGTGCAGGAGGCATAGGTACCACATTGATCCTGGGTGCGTGGAT +
Preference number: 5 (lower is better)
Translates to: CWHNHGRWAGRHDGR*CRRHRYHIDPGCVD
Trigger: ATCCACGCACCCAGGATCAATGTGGTACCTATGCCTCCTGCAGCACCTCCCATCATGGCGCCCCGCCCACCTCCCATGATTGTGCCAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 90 bp CCAGACCTGGTGCATAAACCTCATCATCACTCTGCTTCTCTCGGATaGAGCGGTCCCGCTGCTCCAGCCAGCGGGGGTCAAGAAGCCCAA +
Preference number: 5 (lower is better)
Translates to: PDLVHKPHHHSASLG*SGPAAPASGGQEAQ
Trigger: TTGGGCTTCTTGACCCCCGCTGGCTGGAGCAGCGGGACCGCTCCATCCGAGAGAAGCAGAGTGATGATGAGGTTTATGCACCAGGTCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 90 bp GTCTCTTGGATCACCTGGGCTTGGACCTTCTGGGGCAGCTGCTGTTaGGTAGCTTGCTGCTGCTGCTGCATAACCTTGGGGATGGCAGCT +
Preference number: 5 (lower is better)
Translates to: VSWITWAWTFWGSCC*VACCCCCITLGMAA
Trigger: AGCTGCCATCCCCAAGGTTATGCAGCAGCAGCAGCAAGCTACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp GAGGCCCCAGGGACACTCCTGGAATTGGTGGTGCAAAGAGGTACAATGGCAAGGTGCTGCTGCATAACCTaGGGGATGGCAGCTGAGGGC +
Preference number: 5 (lower is better)
Translates to: EAPGTLLELVVQRGTMARCCCIT*GMAAEG
Trigger: GCCCTCAGCTGCCATCCCCAAGGTTATGCAGCAGCA...CCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 90 bp TCTCCACTTCCTCGCTCTCCCCAAACTTCTCGTAGCGCTCCTGAATaGGGATCCGAGCTCCCAGTTCCTCTGGTGTTGTTGGGGGTGGAA +
Preference number: 5 (lower is better)
Translates to: SPLPRSPQTSRSAPE*GSELPVPLVLLGVE
Trigger: TTCCACCCCCAACAACACCAGAGGAACTGGGAGCTCGGATCCTCATTCAGGAGCGCTACGAGAAGTTTGGGGAGAGCGAGGAAGTGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 90 bp TCCTTCGGTACTATGGTCTCTTGGATCACCTGGGCTTGGACCTTCTaGGGCAGCTGCTGTTGCGTAGCTTGCTGCTGCTGCTGCATAACC +
Preference number: 5 (lower is better)
Translates to: SFGTMVSWITWAWTF*GSCCCVACCCCCIT
Trigger: GGTTATGCAGCAGCAGCAGCAAGCTACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGACCATAGTACCGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 90 bp ATCTTCTCCTTAGTGTCATCTTCCGGCACCAGGCCCTTGGCCTTATaGATGGCCTCAATCTGCTCCTGGAGGGTGATGTTGGCCTGGGCA +
Preference number: 5 (lower is better)
Translates to: IFSLVSSSGTRPLAL*MASICSWRVMLAWA
Trigger: TGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATCCATAAGGCCAAGGGCCTGGTGCCGGAAGATGACACTAAGGAGAAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGCTGGGGCAGCTGCTGTaGCGTAGCTTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRLGQLL*RSLLLL
Trigger: CAGCAGCAGCAAGCTACGCAACAGCAGCTGCCCCAG...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGCGGTACTATGGTCTCTaGGATCACCTGGGCTTGGAC +
Preference number: 5 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKRYYGL*DHLGLD
Trigger: GTCCAAGCCCAGGTGATCCAAGAGACCATAGTACCG...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGGGGATTTCATTGGGCTaGCTGGGGCCAATCTTCTCC +
Preference number: 5 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKGISLG*LGPIFS
Trigger: GGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCC...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 90 bp ATGAACTCAAACTCAGGAGGGGGCTCCTTCGGTACTATGGTCTCTTaGATCACCTGGGCTTGGACCTTCTGGGGCAGCTGCTGTTGCGTA +
Preference number: 5 (lower is better)
Translates to: MNSNSGGGSFGTMVS*ITWAWTFWGSCCCV
Trigger: TACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGACCATAGTACCGAAGGAGCCCCCTCCTGAGTTTGAGTTCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTATGCCGACCACTGGCTaGGAAGGGGTGGGATCCTCC +
Preference number: 5 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTMPTTG*EGVGSS
Trigger: GGAGGATCCCACCCCTTCCAAGCCAGTGGTCGGCAT...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CACTCTCCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCCAGTTCCTCTGGTGTaGTTGGGGGTGGAAAGTTTC +
Preference number: 5 (lower is better)
Translates to: HSPLSPPSEYTQQHHPCLPVPLV*LGVESF
Trigger: GAAACTTTCCACCCCCAACAACACCAGAGGAACTGG...GAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGGAGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTGCTGAGCTGGGGATATaGGTGGCTGAAGATGGAGGT +
Preference number: 5 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGAELGI*VAEDGG
Trigger: ACCTCCATCTTCAGCCACCAATATCCCCAGCTCAGC...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 90 bp GCTGCTCTTTCTGCATCAGCTGGGTCAGAAACTGACGCCCATTCCTaGCCACAAACTGAGCTGTCAGCTTCACTACATCCAGGTCGAAGG +
Preference number: 5 (lower is better)
Translates to: AALSASAGSETDAHS*PQTELSASLHPGRR
Trigger: CCTTCGACCTGGATGTAGTGAAGCTGACAGCTCAGTTTGTGGCCAGGAATGGGCGTCAGTTTCTGACCCAGCTGATGCAGAAAGAGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp GAGGCCCCAGGGACACTCCTGGAATTGGTGGTGCAAAGAGGTACAATGGCAAGGATCCATGTCCTGTACTaGAGTATCCTGGTCCAGCTG +
Preference number: 5 (lower is better)
Translates to: EAPGTLLELVVQRGTMARIHVLY*SILVQL
Trigger: CAGCTGGACCAGGATACTCAAGTACAGGACATGGAT...CCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGCTTCCGCACAATGACTaGGTCTGGTGTTGGGGGCAG +
Preference number: 5 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRLPHND*VWCWGQ
Trigger: CTGCCCCCAACACCAGACCAAGTCATTGTGCGGAAG...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGATGTGCTCCTGCATTTaGCTGGCAGGAATCTTCTCC +
Preference number: 5 (lower is better)
Translates to: PLSPPSEYTQQHHPCLHKMCSCI*LAGIFS
Trigger: GGAGAAGATTCCTGCCAGCAAAATGCAGGAGCACAT...CTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 90 bp ATGACAGAGACCTGGTCTGTGAGTGGGAGAGTGAAGACCAGCCCCTaGCCATTCAGCTTCCATTCCGTCTTATCCTGCATGTTGGGTACC +
Preference number: 5 (lower is better)
Translates to: MTETWSVSGRVKTSP*PFSFHSVLSCMLGT
Trigger: GGTACCCAACATGCAGGATAAGACGGAATGGAAGCTGAATGGTCAGGGGCTGGTCTTCACTCTCCCACTCACAGACCAGGTCTCTGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CACTCTCCACTCTCCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCTCCTTGCTCATTGGGTaGAAAATCCACTGTCTCCAC +
Preference number: 5 (lower is better)
Translates to: HSPLSPPSEYTQQHHPCLSLLIG*KIHCLH
Trigger: GTGGAGACAGTGGATTTTCAACCCAATGAGCAAGGA...GAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGGAGAGTGGAGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAAGTTCCTCTGGTGTTGTaGGGGGTGGAAAGTTTCCTT +
Preference number: 5 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQVPLVL*GVESFL
Trigger: AAGGAAACTTTCCACCCCCAACAACACCAGAGGAAC...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CCATACAACAGTACCCCCTCCTCCTCCTGGAAATCCCTCCAGGGGATTTCTGGTTTGGGTACCTGCACTTaGATGGATACTGGACCCTTG +
Preference number: 5 (lower is better)
Translates to: PYNSTPSSSWKSLQGISGLGTCT*MDTGPL
Trigger: CAAGGGTCCAGTATCCATCAAAGTGCAGGTACCCAA...ACCAGAAATCCCCTGGAGGGATTTCCAGGAGGAGGAGGGGGTACTGTTGTATGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 90 bp CTTCTCGTAGCGCTCCTGAATGAGGATCCGAGCTCCCAGTTCCTCTaGTGTTGTTGGGGGTGGAAAGTTTCCTTGCTCATTGGGTTGAAA +
Preference number: 5 (lower is better)
Translates to: LLVALLNEDPSSQFL*CCWGWKVSLLIGLK
Trigger: TTTCAACCCAATGAGCAAGGAAACTTTCCACCCCCAACAACACCAGAGGAACTGGGAGCTCGGATCCTCATTCAGGAGCGCTACGAGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAAGTCTTATCCTGCATGTaGGGTACCTGCACTTTGATG +
Preference number: 5 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQVLSCM*GTCTLM
Trigger: CATCAAAGTGCAGGTACCCAACATGCAGGATAAGAC...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGGGGTGGGATCCTCCTTaGACGATGCTTCTTCTTCAA +
Preference number: 5 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRGWDPP*TMLLLQ
Trigger: TTGAAGAAGAAGCATCGTCAAAGGAGGATCCCACCC...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CAGCAACACCACCCATGCCTCCACAAGACCACAACTCCAAAAATAATAACCCACCAGGCACAAAGGCTGTaGGCACAATCATGGGAGGTG +
Preference number: 5 (lower is better)
Translates to: QQHHPCLHKTTTPKIITHQAQRL*AQSWEV
Trigger: CACCTCCCATGATTGTGCCAACAGCCTTTGTGCCTG...GTGGGTTATTATTTTTGGAGTTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CCCCTCCCTCTGAATACACACAGCAACACCACCCATGCCTCCACAAGACCACAAAGGGAGTTGGAATCCTaGATGAAGATGCCTTCATAC +
Preference number: 5 (lower is better)
Translates to: PLPLNTHSNTTHASTRPQRELES*MKMPSY
Trigger: GTATGAAGGCATCTTCATCAAGGATTCCAACTCCCT...TTGTGGTCTTGTGGAGGCATGGGTGGTGTTGCTGTGTGTATTCAGAGGGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 90 bp GTAAATAATGCCGACCACTGGCTTGGAAGGGGTGGGATCCTCCTTTaGCGATGCTTCTTCTTCAATTGGCTGTTTGGACTCAGTGGCTAC +
Preference number: 5 (lower is better)
Translates to: VNNADHWLGRGGILL*RCFFFNWLFGLSGY
Trigger: GTAGCCACTGAGTCCAAACAGCCAATTGAAGAAGAAGCATCGTCAAAGGAGGATCCCACCCCTTCCAAGCCAGTGGTCGGCATTATTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 90 bp TCAGCTTCCATTCCGTCTTATCCTGCATGTTGGGTACCTGCACTTTaGTGGATACTGGACCCTTGTTCCTGCGCAGGAATTCTTCCTCAG +
Preference number: 5 (lower is better)
Translates to: SASIPSYPACWVPAL*WILDPCSCAGILPQ
Trigger: CTGAGGAAGAATTCCTGCGCAGGAACAAGGGTCCAGTATCCATCAAAGTGCAGGTACCCAACATGCAGGATAAGACGGAATGGAAGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 90 bp TCATACTGTAGTTTCTGTTTCCCCGCAGGCATGCCCGTGGCTTCATaGATCTTCACTTTGATGACAGAGACCTGGTCTGTGAGTGGGAGA +
Preference number: 5 (lower is better)
Translates to: SYCSFCFPAGMPVAS*IFTLMTETWSVSGR
Trigger: TCTCCCACTCACAGACCAGGTCTCTGTCATCAAAGTGAAGATTCATGAAGCCACGGGCATGCCTGCGGGGAAACAGAAACTACAGTATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CAATGTGTTCAAAACCAGCCTAACCTATATAGCAAGTTCCAGTGGAGCTATAACGGTGTACAGGAGGCATaGGAGCTGGGGCTGGGACTG +
Preference number: 5 (lower is better)
Translates to: QCVQNQPNLYSKFQWSYNGVQEA*ELGLGL
Trigger: CAGTCCCAGCCCCAGCTCCAATGCCTCCTGTACACC...GTTATAGCTCCACTGGAACTTGCTATATAGGTTAGGCTGGTTTTGAACACATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CTGTGGTCAATGAGCCTCCAAGTGAATGTGAGTCAGGACAGGCACTCATTCAGGATGCTTCTTCTTCAATaGGCTGTTTGGACTCAGTGG +
Preference number: 5 (lower is better)
Translates to: LWSMSLQVNVSQDRHSFRMLLLQ*AVWTQW
Trigger: CCACTGAGTCCAAACAGCCAATTGAAGAAGAAGCAT...CCTGAATGAGTGCCTGTCCTGACTCACATTCACTTGGAGGCTCATTGACCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp GAGGCCCCAGGGACACTCCTGGAATTGGTGGTGCAAAGAGGTACAATGGCAAGGTTTTCAGCCTCTTTCTaGAGCTTTGAAAATAAGCCT +
Preference number: 5 (lower is better)
Translates to: EAPGTLLELVVQRGTMARFSASF*SFENKP
Trigger: AGGCTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAA...CCTTGCCATTGTACCTCTTTGCACCACCAATTCCAGGAGTGTCCCTGGGGCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCACTGCCGCCTCTCTCCTaGAGGGCCAAGTGGATGACA +
Preference number: 5 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSLPPLS*RAKWMT
Trigger: TGTCATCCACTTGGCCCTCAAGGAGAGAGGCGGCAG...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp TTCTACCCAGTCACATTCTTGGTCTCATGTCACAGCCTCAGCCATAGAGGCACTTTGAACTTGGGGTTGTaGATCTCATTCTGTCGAATC +
Preference number: 5 (lower is better)
Translates to: FYPVTFLVSCHSLSHRGTLNLGL*ISFCRI
Trigger: GATTCGACAGAATGAGATCAACAACCCCAAGTTCAA...AGTGCCTCTATGGCTGAGGCTGTGACATGAGACCAAGAATGTGACTGGGTAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp AGGACAGGCACTCATTCAGGAATTCTGGGAACTGTTAGCTCCCGAGCCTGGATCTTTGAAAATAAGCCTTaGGGTGGAATCAAGATCTTG +
Preference number: 5 (lower is better)
Translates to: RTGTHSGILGTVSSRAWIFENKP*GGIKIL
Trigger: CAAGATCTTGATTCCACCCAAAGGCTTATTTTCAAA...GATCCAGGCTCGGGAGCTAACAGTTCCCAGAATTCCTGAATGAGTGCCTGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp GCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAACACACTCGGTCTTTAGTTTCTaGGATGGAGGCTCATCCTCC +
Preference number: 5 (lower is better)
Translates to: AHAVLQKETSFVYSLSTHSVFSF*DGGSSS
Trigger: GGAGGATGAGCCTCCATCCAAGAAACTAAAGACCGA...GTGTGTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCATCTTCAATTGGCTGTTaGGACTCAGTGGCTACTGGC +
Preference number: 5 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSSSIGC*DSVATG
Trigger: GCCAGTAGCCACTGAGTCCAAACAGCCAATTGAAGA...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAGGTGGAATCAAGATCTaGGTATACTGCTCCACCAGC +
Preference number: 5 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSGGIKI*VYCSTS
Trigger: GCTGGTGGAGCAGTATACCAAGATCTTGATTCCACC...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp GCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCAACACACGGGTGGAAAGTTTCCTaGCTCATTGGGTTGAAAATC +
Preference number: 5 (lower is better)
Translates to: AHAVLQKETSFVYSLSTHGWKVS*LIGLKI
Trigger: GATTTTCAACCCAATGAGCAAGGAAACTTTCCACCC...GTGTGTTGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS-3UTR CAA 90 bp CTTTCAGCACATGCAGTCCTCCAAAAAGAAACCAGCTTTGTTTACAGCTTATCATTGGGATTTAAGAAATaGAACTTGGGGTTGTTGATC +
Preference number: 5 (lower is better)
Translates to: LSAHAVLQKETSFVYSLSLGFKK*NLGLLI
Trigger: GATCAACAACCCCAAGTTCAATTTCTTAAATCCCAA...TGATAAGCTGTAAACAAAGCTGGTTTCTTTTTGGAGGACTGCATGTGCTGAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp ATCTGCTCCTGGAGGGTGATGTTGGCCTGGGCAGCCTaGTGGGTCCGGGCCATGCTGCCTGAATGGCCATCC +
Preference number: 6 (lower is better)
Translates to: ICSWRVMLAWAA*WVRAMLPEWPS
Trigger: GGATGGCCATTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp TCATCACTCTGCTTCTCTCGGATGGAGCGGTCCCGCTaGTCCAGCCAGCGGGGGTCAAGAAGCCCAATGCGC +
Preference number: 6 (lower is better)
Translates to: SSLCFSRMERSR*SSQRGSRSPMR
Trigger: GCGCATTGGGCTTCTTGACCCCCGCTGGCTGGAGCAGCGGGACCGCTCCATCCGAGAGAAGCAGAGTGATGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp GGCACCAGGCCCTTGGCCTTATGGATGGCCTCAATCTaGTCCTGGAGGGTGATGTTGGCCTGGGCAGCCTGC +
Preference number: 6 (lower is better)
Translates to: GTRPLALWMASI*SWRVMLAWAAC
Trigger: GCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATCCATAAGGCCAAGGGCCTGGTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp TGGGCAGCCTGCTGGGTCCGGGCCATGCTGCCTGAATaGCCATCCCAAGTCACCTTCTCCTCTGGCTTCTGG +
Preference number: 6 (lower is better)
Translates to: WAACWVRAMLPE*PSQVTFSSGFW
Trigger: CCAGAAGCCAGAGGAGAAGGTGACTTGGGATGGCCATTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp ATGGCCTCAATCTGCTCCTGGAGGGTGATGTTGGCCTaGGCAGCCTGCTGGGTCCGGGCCATGCTGCCTGAA +
Preference number: 6 (lower is better)
Translates to: MASICSWRVMLA*AACWVRAMLPE
Trigger: TTCAGGCAGCATGGCCCGGACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp AGGCCCTTGGCCTTATGGATGGCCTCAATCTGCTCCTaGAGGGTGATGTTGGCCTGGGCAGCCTGCTGGGTC +
Preference number: 6 (lower is better)
Translates to: RPLALWMASICS*RVMLAWAACWV
Trigger: GACCCAGCAGGCTGCCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATCCATAAGGCCAAGGGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 90 bp CGGGGCGCCATGATGGGAGGTGCTGCAGGAGGCATAGGTACCACATaGATCCTGGGTGCGTGGATGATGGGTGGCATGGGGGCAATCACT +
Preference number: 6 (lower is better)
Translates to: RGAMMGGAAGGIGTT*ILGAWMMGGMGAIT
Trigger: AGTGATTGCCCCCATGCCACCCATCATCCACGCACCCAGGATCAATGTGGTACCTATGCCTCCTGCAGCACCTCCCATCATGGCGCCCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp ACCTTCTGGGGCAGCTGCTGTTGCGTAGCTTGCTGCTaGTGCTGCATAACCTTGGGGATGGCAGCTGAGGGC +
Preference number: 6 (lower is better)
Translates to: TFWGSCCCVACC*CCITLGMAAEG
Trigger: GCCCTCAGCTGCCATCCCCAAGGTTATGCAGCAGCAGCAGCAAGCTACGCAACAGCAGCTGCCCCAGAAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp CCCGCTGCTCCAGCCAGCGGGGGTCAAGAAGCCCAATaGGCATGTGCTCCTGCATTTTGCTGGCAGGAATCT +
Preference number: 6 (lower is better)
Translates to: PAAPASGGQEAQ*ACAPAFCWQES
Trigger: AGATTCCTGCCAGCAAAATGCAGGAGCACATGCGCATTGGGCTTCTTGACCCCCGCTGGCTGGAGCAGCGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp ACGATGCTTCTTCTTCAATTGGCTGTTTGGACTCAGTaGCTACTGGCGGCGGCGGGGGTACCGCCTGCACGG +
Preference number: 6 (lower is better)
Translates to: TMLLLQLAVWTQ*LLAAAGVPPAR
Trigger: CCGTGCAGGCGGTACCCCCGCCGCCGCCAGTAGCCACTGAGTCCAAACAGCCAATTGAAGAAGAAGCATCGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 90 bp GGTCTCTTGGATCACCTGGGCTTGGACCTTCTGGGGCAGCTGCTGTaGCGTAGCTTGCTGCTGCTGCTGCATAACCTTGGGGATGGCAGC +
Preference number: 6 (lower is better)
Translates to: GLLDHLGLDLLGQLL*RSLLLLLHNLGDGS
Trigger: GCTGCCATCCCCAAGGTTATGCAGCAGCAGCAGCAAGCTACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp ATCACCTGGGCTTGGACCTTCTGGGGCAGCTGCTGTTaGGTAGCTTGCTGCTGCTGCTGCATAACCTTGGGG +
Preference number: 6 (lower is better)
Translates to: ITWAWTFWGSCC*VACCCCCITLG
Trigger: CCCCAAGGTTATGCAGCAGCAGCAGCAAGCTACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp GGGGGCTCCTTCGGTACTATGGTCTCTTGGATCACCTaGGCTTGGACCTTCTGGGGCAGCTGCTGTTGCGTA +
Preference number: 6 (lower is better)
Translates to: GGSFGTMVSWIT*AWTFWGSCCCV
Trigger: TACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGACCATAGTACCGAAGGAGCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp AACTCAGGAGGGGGCTCCTTCGGTACTATGGTCTCTTaGATCACCTGGGCTTGGACCTTCTGGGGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: NSGGGSFGTMVS*ITWAWTFWGSC
Trigger: GCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGACCATAGTACCGAAGGAGCCCCCTCCTGAGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp GTGCATAAACCTCATCATCACTCTGCTTCTCTCGGATaGAGCGGTCCCGCTGCTCCAGCCAGCGGGGGTCAA +
Preference number: 6 (lower is better)
Translates to: VHKPHHHSASLG*SGPAAPASGGQ
Trigger: TTGACCCCCGCTGGCTGGAGCAGCGGGACCGCTCCATCCGAGAGAAGCAGAGTGATGATGAGGTTTATGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 72 bp GATCACCTGGGCTTGGACCTTCTGGGGCAGCTGCTGTaGCGTAGCTTGCTGCTGCTGCTGCATAACCTTGGG +
Preference number: 6 (lower is better)
Translates to: DHLGLDLLGQLL*RSLLLLLHNLG
Trigger: CCCAAGGTTATGCAGCAGCAGCAGCAAGCTACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp TCTTGGATCACCTGGGCTTGGACCTTCTGGGGCAGCTaGTGTTGCGTAGCTTGCTGCTGCTGCTGCATAACC +
Preference number: 6 (lower is better)
Translates to: SWITWAWTFWGS*CCVACCCCCIT
Trigger: GGTTATGCAGCAGCAGCAGCAAGCTACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp CACAGATGCCATGGGTGGCCGAGGCATGACAGGTACTaGAGATACAACAGTGGTGCGGACTGGAGGTGGCAT +
Preference number: 6 (lower is better)
Translates to: HRCHGWPRHDRY*RYNSGADWRWH
Trigger: ATGCCACCTCCAGTCCGCACCACTGTTGTATCTGCAGTACCTGTCATGCCTCGGCCACCCATGGCATCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp GCAGGAGGCATAGGTACCACATTGATCCTGGGTGCGTaGATGATGGGTGGCATGGGGGCAATCACTGAGCCT +
Preference number: 6 (lower is better)
Translates to: AGGIGTTLILGA*MMGGMGAITEP
Trigger: AGGCTCAGTGATTGCCCCCATGCCACCCATCATCCACGCACCCAGGATCAATGTGGTACCTATGCCTCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 72 bp AAACTCAGGAGGGGGCTCCTTCGGTACTATGGTCTCTaGGATCACCTGGGCTTGGACCTTCTGGGGCAGCTG +
Preference number: 6 (lower is better)
Translates to: KLRRGLLRYYGL*DHLGLDLLGQL
Trigger: CAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGACCATAGTACCGAAGGAGCCCCCTCCTGAGTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 72 bp ATGATGGGAGGTGCTGCAGGAGGCATAGGTACCACATaGATCCTGGGTGCGTGGATGATGGGTGGCATGGGG +
Preference number: 6 (lower is better)
Translates to: MMGGAAGGIGTT*ILGAWMMGGMG
Trigger: CCCCATGCCACCCATCATCCACGCACCCAGGATCAATGTGGTACCTATGCCTCCTGCAGCACCTCCCATCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 90 bp GATGAACTCAAACTCAGGAGGGGGCTCCTTCGGTACTATGGTCTCTaGGATCACCTGGGCTTGGACCTTCTGGGGCAGCTGCTGTTGCGT +
Preference number: 6 (lower is better)
Translates to: DELKLRRGLLRYYGL*DHLGLDLLGQLLLR
Trigger: ACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGACCATAGTACCGAAGGAGCCCCCTCCTGAGTTTGAGTTCATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 90 bp CTGGGGCCAATCTTCTCCTTAGTGTCATCTTCCGGCACCAGGCCCTaGGCCTTATGGATGGCCTCAATCTGCTCCTGGAGGGTGATGTTG +
Preference number: 6 (lower is better)
Translates to: LGPIFSLVSSSGTRP*ALWMASICSWRVML
Trigger: CAACATCACCCTCCAGGAGCAGATTGAGGCCATCCATAAGGCCAAGGGCCTGGTGCCGGAAGATGACACTAAGGAGAAGATTGGCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 72 bp CCTCGCTCTCCCCAAACTTCTCGTAGCGCTCCTGAATaGGGATCCGAGCTCCCAGTTCCTCTGGTGTTGTTG +
Preference number: 6 (lower is better)
Translates to: PRSPQTSRSAPE*GSELPVPLVLL
Trigger: CAACAACACCAGAGGAACTGGGAGCTCGGATCCTCATTCAGGAGCGCTACGAGAAGTTTGGGGAGAGCGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp TCCTTCGGTACTATGGTCTCTTGGATCACCTGGGCTTaGACCTTCTGGGGCAGCTGCTGTTGCGTAGCTTGC +
Preference number: 6 (lower is better)
Translates to: SFGTMVSWITWA*TFWGSCCCVAC
Trigger: GCAAGCTACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGACCATAGTACCGAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 72 bp CTCCTTCGGTACTATGGTCTCTTGGATCACCTGGGCTaGGACCTTCTGGGGCAGCTGCTGTTGCGTAGCTTG +
Preference number: 6 (lower is better)
Translates to: LLRYYGLLDHLG*DLLGQLLLRSL
Trigger: CAAGCTACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGACCATAGTACCGAAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 72 bp GGGATATTGGTGGCTGAAGATGGAGGTGGTGGCTGCTaGGGGATTTCATTGGGCTTGCTGGGGCCAATCTTC +
Preference number: 6 (lower is better)
Translates to: GILVAEDGGGGC*GISLGLLGPIF
Trigger: GAAGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAGCAGCCACCACCTCCATCTTCAGCCACCAATATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp GGAGGCATGGGTGTCTCTGGGGGTGGAGGCACTTTCTaGCCTTCTTCTTCATCATCTGAACCCTCATCCATG +
Preference number: 6 (lower is better)
Translates to: GGMGVSGGGGTF*PSSSSSEPSSM
Trigger: CATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCTCCACCCCCAGAGACACCCATGCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp GCGCTCCTGAATGAGGATCCGAGCTCCCAGTTCCTCTaGTGTTGTTGGGGGTGGAAAGTTTCCTTGCTCATT +
Preference number: 6 (lower is better)
Translates to: ALLNEDPSSQFL*CCWGWKVSLLI
Trigger: AATGAGCAAGGAAACTTTCCACCCCCAACAACACCAGAGGAACTGGGAGCTCGGATCCTCATTCAGGAGCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp TCTGCATCAGCTGGGTCAGAAACTGACGCCCATTCCTaGCCACAAACTGAGCTGTCAGCTTCACTACATCCA +
Preference number: 6 (lower is better)
Translates to: SASAGSETDAHS*PQTELSASLHP
Trigger: TGGATGTAGTGAAGCTGACAGCTCAGTTTGTGGCCAGGAATGGGCGTCAGTTTCTGACCCAGCTGATGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 72 bp TGCCGACCACTGGCTTGGAAGGGGTGGGATCCTCCTTaGACGATGCTTCTTCTTCAATTGGCTGTTTGGACT +
Preference number: 6 (lower is better)
Translates to: CRPLAWKGWDPP*TMLLLQLAVWT
Trigger: AGTCCAAACAGCCAATTGAAGAAGAAGCATCGTCAAAGGAGGATCCCACCCCTTCCAAGCCAGTGGTCGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 72 bp AGTTTCTGTTTCCCCGCAGGCATGCCCGTGGCTTCATaGATCTTCACTTTGATGACAGAGACCTGGTCTGTG +
Preference number: 6 (lower is better)
Translates to: SFCFPAGMPVAS*IFTLMTETWSV
Trigger: CACAGACCAGGTCTCTGTCATCAAAGTGAAGATTCATGAAGCCACGGGCATGCCTGCGGGGAAACAGAAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp AGCTTCCATTCCGTCTTATCCTGCATGTTGGGTACCTaGACTTTGATGGATACTGGACCCTTGTTCCTGCGC +
Preference number: 6 (lower is better)
Translates to: SFHSVLSCMLGT*TLMDTGPLFLR
Trigger: GCGCAGGAACAAGGGTCCAGTATCCATCAAAGTGCAGGTACCCAACATGCAGGATAAGACGGAATGGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp GATCCGAGCTCCCAGTTCCTCTGGTGTTGTTGGGGGTaGAAAGTTTCCTTGCTCATTGGGTTGAAAATCCAC +
Preference number: 6 (lower is better)
Translates to: DPSSQFLWCCWG*KVSLLIGLKIH
Trigger: GTGGATTTTCAACCCAATGAGCAAGGAAACTTTCCACCCCCAACAACACCAGAGGAACTGGGAGCTCGGATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS GCA 72 bp TCTACCCCAAAGATGTCAGTACGTCGCTCAGCCAACTaGTTTAAGCTGCTCTCAATATCCAGACCTGGTGCA +
Preference number: 6 (lower is better)
Translates to: STPKMSVRRSAN*FKLLSISRPGA
Trigger: TGCACCAGGTCTGGATATTGAGAGCAGCTTAAAGCAGTTGGCTGAGCGACGTACTGACATCTTTGGGGTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CCA 72 bp GAATGGCCATCCCAAGTCACCTTCTCCTCTGGCTTCTaGATCTCCTCTTCACCAATCTTCTTACCAATGGCT +
Preference number: 6 (lower is better)
Translates to: EWPSQVTFSSGF*ISSSPIFLPMA
Trigger: AGCCATTGGTAAGAAGATTGGTGAAGAGGAGATCCAGAAGCCAGAGGAGAAGGTGACTTGGGATGGCCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 72 bp CAGTTCCTCTGGTGTTGTTGGGGGTGGAAAGTTTCCTaGCTCATTGGGTTGAAAATCCACTGTCTCCACCAC +
Preference number: 6 (lower is better)
Translates to: QFLWCCWGWKVS*LIGLKIHCLHH
Trigger: GTGGTGGAGACAGTGGATTTTCAACCCAATGAGCAAGGAAACTTTCCACCCCCAACAACACCAGAGGAACTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 72 bp CATTCCGTCTTATCCTGCATGTTGGGTACCTGCACTTaGATGGATACTGGACCCTTGTTCCTGCGCAGGAAT +
Preference number: 6 (lower is better)
Translates to: HSVLSCMLGTCT*MDTGPLFLRRN
Trigger: ATTCCTGCGCAGGAACAAGGGTCCAGTATCCATCAAAGTGCAGGTACCCAACATGCAGGATAAGACGGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 90 bp TTCAGCTTCCATTCCGTCTTATCCTGCATGTTGGGTACCTGCACTTaGATGGATACTGGACCCTTGTTCCTGCGCAGGAATTCTTCCTCA +
Preference number: 6 (lower is better)
Translates to: FSFHSVLSCMLGTCT*MDTGPLFLRRNSSS
Trigger: TGAGGAAGAATTCCTGCGCAGGAACAAGGGTCCAGTATCCATCAAAGTGCAGGTACCCAACATGCAGGATAAGACGGAATGGAAGCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS TCA 72 bp ATTCCGTCTTATCCTGCATGTTGGGTACCTGCACTTTaGTGGATACTGGACCCTTGTTCCTGCGCAGGAATT +
Preference number: 6 (lower is better)
Translates to: IPSYPACWVPAL*WILDPCSCAGI
Trigger: AATTCCTGCGCAGGAACAAGGGTCCAGTATCCATCAAAGTGCAGGTACCCAACATGCAGGATAAGACGGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 72 bp TTTTCAGCCTCTTTCTTGAGCTTTGAAAATAAGCCTTaGGGTGGAATCAAGATCTTGGTATACTGCTCCACC +
Preference number: 6 (lower is better)
Translates to: FSASFLSFENKP*GGIKILVYCST
Trigger: GGTGGAGCAGTATACCAAGATCTTGATTCCACCCAAAGGCTTATTTTCAAAGCTCAAGAAAGAGGCTGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4
CDS CAA 72 bp GGGTCATTGGGATTTAAGAAATTGAACTTGGGGTTGTaGATCTCATTCTGTCGAATCCTAGCTTCAAATTCA +
Preference number: 6 (lower is better)
Translates to: GSLGFKKLNLGL*ISFCRILASNS
Trigger: TGAATTTGAAGCTAGGATTCGACAGAATGAGATCAACAACCCCAAGTTCAATTTCTTAAATCCCAATGACCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002198.4