RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SEZ6L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058153

Ensembl transcript IDs: ENSMUST00000075387.11, ENSMUST00000079491.14, ENSMUST00000197425.2, ENSMUST00000200575.5, ENSMUST00000212480.2, ENSMUST00000212758.2

Found 542 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCCAAGACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTaGCTTTCAGGTCAGGATGTAGCCCTCCCTCCCCTGCAGACCTGG +
Preference number: 1 (lower is better)
Translates to: GQDSLGAQVEIRADP*LSGQDVALPPLQTW
Trigger: CCAGGTCTGCAGGGGAGGGAGGGCTACATCCTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTCTTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 90 bp ACAACCCCAGATAGCACAGGAGAACACAGGGAGGGTCCTCTAGGCTaGCTGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACA +
Preference number: 1 (lower is better)
Translates to: TTPDSTGEHREGPLG*LLTCLAAEHPLVTT
Trigger: TGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCAGTCAGCCTAGAGGACCCTCCCTGTGTTCTCCTGTGCTATCTGGGGTTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 90 bp CCCCCTGGCCACAGTGGTCAGGCACATGCACGCAGGGGCCTTTCCTaGAGGAAGATGAGTCTATCCTTGCTAGGACGAGGGCTGAGAAGA +
Preference number: 1 (lower is better)
Translates to: PPGHSGQAHARRGLS*RKMSLSLLGRGLRR
Trigger: TCTTCTCAGCCCTCGTCCTAGCAAGGATAGACTCATCTTCCTCCAGGAAAGGCCCCTGCGTGCATGTGCCTGACCACTGTGGCCAGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 90 bp CTACGGTTCCTGAAGCTACCCATTGGTTCGTCGGAGTCCCCAGGGTaGCCATTCAGGCTAAACCCTTTCTCCTTCTCCAGGGCTGTGTGT +
Preference number: 1 (lower is better)
Translates to: LRFLKLPIGSSESPG*PFRLNPFSFSRAVC
Trigger: ACACACAGCCCTGGAGAAGGAGAAAGGGTTTAGCCTGAATGGGCACCCTGGGGACTCCGACGAACCAATGGGTAGCTTCAGGAACCGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 90 bp CTTGTTAAGCCTGTAATTTCTACCATGCTCTGCCTACAGGGAATCTaGTTGGGTACTGATGCCACCTCCCCACCCCCTCAGCCCTGCTCC +
Preference number: 1 (lower is better)
Translates to: LVKPVISTMLCLQGI*LGTDATSPPPQPCS
Trigger: GGAGCAGGGCTGAGGGGGTGGGGAGGTGGCATCAGTACCCAAGCAGATTCCCTGTAGGCAGAGCATGGTAGAAATTACAGGCTTAACAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 90 bp GAGGGGCCTCTCTCTTTCTCAGCACCTCCCCTGCCAGGGAGTTTGTaGGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAG +
Preference number: 1 (lower is better)
Translates to: EGPLSFSAPPLPGSL*EQDWEAVSLMAMSK
Trigger: CTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGCAGGGGAGGTGCTGAGAAAGAGAGAGGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 90 bp AGGAAGGTCACCACCAAAGGAAGAGGTCTTTTTGCCTACGGTTCCTaGAGCTACCCATTGGTTCGTCGGAGTCCCCAGGGTGCCCATTCA +
Preference number: 1 (lower is better)
Translates to: RKVTTKGRGLFAYGS*SYPLVRRSPQGAHS
Trigger: TGAATGGGCACCCTGGGGACTCCGACGAACCAATGGGTAGCTTCAGGAACCGTAGGCAAAAAGACCTCTTCCTTTGGTGGTGACCTTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 90 bp CCCCTGGTCACGACATGGTCCTCAAGTGATTGCTCTCCCCATGCCTaGTGTCTCCTCCAGCACCTAACTCTGACACCTTTCTTAAGGACT +
Preference number: 1 (lower is better)
Translates to: PLVTTWSSSDCSPHA*CLLQHLTLTPFLRT
Trigger: AGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTGGAGGAGACAGCAGGCATGGGGAGAGCAATCACTTGAGGACCATGTCGTGACCAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 90 bp GGGCCACGGCCTCTAACGAAGGCTAACGGAGCAGTCGCTGAAGGCTaGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTC +
Preference number: 1 (lower is better)
Translates to: GPRPLTKANGAVAEG*EGLLLGNILFLLTF
Trigger: GAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCAGCCTTCAGCGACTGCTCCGTTAGCCTTCGTTAGAGGCCGTGGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 90 bp CCAAAGGAAGAGGTCTTTTTGCCTACGGTTCCTGAAGCTACCCATTaGTTCGTCGGAGTCCCCAGGGTGCCCATTCAGGCTAAACCCTTT +
Preference number: 1 (lower is better)
Translates to: PKEEVFLPTVPEATH*FVGVPRVPIQAKPF
Trigger: AAAGGGTTTAGCCTGAATGGGCACCCTGGGGACTCCGACGAACCAATGGGTAGCTTCAGGAACCGTAGGCAAAAAGACCTCTTCCTTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 90 bp TCATCGAAGACACAGGAAGGTCACCACCAAAGGAAGAGGTCTTTTTaGCTACGGTTCCTGAAGCTACCCATTGGTTCGTCGGAGTCCCCA +
Preference number: 1 (lower is better)
Translates to: SSKTQEGHHQRKRSF*LRFLKLPIGSSESP
Trigger: TGGGGACTCCGACGAACCAATGGGTAGCTTCAGGAACCGTAGGCAAAAAGACCTCTTCCTTTGGTGGTGACCTTCCTGTGTCTTCGATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 90 bp TGCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATaGCTATGTCAAAGGCCAAGACAGCCTAGGAGCCCAGGTGGAAAT +
Preference number: 1 (lower is better)
Translates to: CQGVCENKIGRQCLS*LCQRPRQPRSPGGN
Trigger: ATTTCCACCTGGGCTCCTAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 90 bp CCTGACAGTGTTTTGGGCTTATCACCTGTTAAGAAAGGGTCTGCCTaGTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATTCTGGGAA +
Preference number: 1 (lower is better)
Translates to: PDSVLGLSPVKKGSA*SSYSRSLGPREFWE
Trigger: TTCCCAGAATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAACAGGTGATAAGCCCAAAACACTGTCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 90 bp CACCTGTTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTaGGCCCCAGGGAATTCTGGGAAAATCTTTGCTGCTTTCGGAAGG +
Preference number: 1 (lower is better)
Translates to: HLLRKGLPAHLILVP*APGNSGKIFAAFGR
Trigger: CCTTCCGAAAGCAGCAAAGATTTTCCCAGAATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAACAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 90 bp AGTCCCCTTCCACAGGAGATCTGTGTCTCCTCCCTGACAGTGTTTTaGGCTTATCACCTGTTAAGAAAGGGTCTGCCTGCTCATCTTATT +
Preference number: 1 (lower is better)
Translates to: SPLPQEICVSSLTVF*AYHLLRKGLPAHLI
Trigger: AATAAGATGAGCAGGCAGACCCTTTCTTAACAGGTGATAAGCCCAAAACACTGTCAGGGAGGAGACACAGATCTCCTGTGGAAGGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 90 bp AGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTaGTCACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTT +
Preference number: 1 (lower is better)
Translates to: RFVSSPKSWLQRLRL*SLGKMVPQAEVRIF
Trigger: AAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 90 bp CTGAAGGCTGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTaGCGTTCGGGCTGGACCTTGTGCCTTGTTAAGCCTGTAATTTCT +
Preference number: 1 (lower is better)
Translates to: LKAGRVCCWEIFCFY*RSGWTLCLVKPVIS
Trigger: AGAAATTACAGGCTTAACAAGGCACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCAGCCTTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACACAGGCTGTGATCACTTaGAAAGATGGTCCCCCAGGC +
Preference number: 2 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTQAVIT*KDGPPG
Trigger: GCCTGGGGGACCATCTTTCCAAGTGATCACAGCCTG...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATGGTCCTCAAGTGCTTATTCTCGTTCCTTaGGCCCCAGGGAATTCTGGG +
Preference number: 2 (lower is better)
Translates to: CSHAWLLSTPWSRHGPQVLILVP*APGNSG
Trigger: CCCAGAATTCCCTGGGGCCCAAGGAACGAGAATAAG...CACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR TCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACACAAAGGCTCAGGCTGTaGTCACTTGGAAAGATGGTC +
Preference number: 2 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTQRLRL*SLGKMV
Trigger: GACCATCTTTCCAAGTGATCACAGCCTGAGCCTTTG...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTGCGGCCACGCTGGGCTaGGACCCAACGCCACAGGGT +
Preference number: 2 (lower is better)
Translates to: CGRAHECIPFEKYLILMGAATLG*DPTPQG
Trigger: ACCCTGTGGCGTTGGGTCGCAGCCCAGCGTGGCCGC...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACAACTCCAAGGCAACTCTaGAAGACACACTCCAACAAC +
Preference number: 2 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTTPRQL*KTHSNN
Trigger: GTTGTTGGAGTGTGTCTTGCAGAGTTGCCTTGGAGT...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCGCCGTCGTGCGACCTTaGCTGCAGCCTCAATGTACC +
Preference number: 2 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVAVVRP*LQPQCT
Trigger: GGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGC...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGGCCGTCGTGCGACCTTaGCTGCAGCCTCAATGTACC +
Preference number: 2 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLAVVRP*LQPQCT
Trigger: GGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGC...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATGGTCCTCAAGTGATCAGAGCAGATCCCTaGCTTTCAGGTCAGGATGTA +
Preference number: 2 (lower is better)
Translates to: CSHAWLLSTPWSRHGPQVIRADP*LSGQDV
Trigger: TACATCCTGACCTGAAAGCCAGGGATCTGCTCTGAT...CACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR TCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGGTATCTATCCCTCTTTaGAGTCCCCTTCCACAGGAG +
Preference number: 2 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQVSIPL*SPLPQE
Trigger: CTCCTGTGGAAGGGGACTTCAAAGAGGGATAGATAC...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACAAAGAAAGGGTCTGCCTaGTCATCTTATTCTCGTTCC +
Preference number: 2 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTKKGSA*SSYSRS
Trigger: GGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTT...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 90 bp CTCTTTCTCAGCACCTCCCCTGCCAGGGAGTTTGTGAGAACAAGATaGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGC +
Preference number: 2 (lower is better)
Translates to: LFLSTSPAREFVRTR*GGSVSHGYVKGQDS
Trigger: GCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGCAGGGGAGGTGCTGAGAAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTGCGGCCACGCTGGGCTaGGACCCAACGCCACAGGGT +
Preference number: 2 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFAATLG*DPTPQG
Trigger: ACCCTGTGGCGTTGGGTCGCAGCCCAGCGTGGCCGC...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGGGCCCCAGGGAATTCTaGGAAAATCTTTGCTGCTTT +
Preference number: 2 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQGPREF*ENLCCF
Trigger: AAAGCAGCAAAGATTTTCCCAGAATTCCCTGGGGCC...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGCGCAGGGGCCTTTCCTaGAGGAAGATGAGTCTATCC +
Preference number: 2 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLRRGLS*RKMSLS
Trigger: GGATAGACTCATCTTCCTCCAGGAAAGGCCCCTGCG...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 90 bp ACGAAGGCTAACGGAGCAGTCGCTGAAGGCTGGGAGGGTCTGCTGTaGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTG +
Preference number: 2 (lower is better)
Translates to: TKANGAVAEGWEGLL*GNILFLLTFGLDLV
Trigger: CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCAGCCTTCAGCGACTGCTCCGTTAGCCTTCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR TCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGCACATGCCTGGCTGCTaGGCACCCCCTGGTCACGAC +
Preference number: 2 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGHMPGC*APPGHD
Trigger: GTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTG...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACTGCAGTTTGCCACTCTaGCTGCCTTGGGAACGGAGG +
Preference number: 2 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDCSLPL*LPWERR
Trigger: CCTCCGTTCCCAAGGCAGGCAGAGTGGCAAACTGCA...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACACTTAGGAGTATACAGTaGACCAAAATCAAACACCAC +
Preference number: 2 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTLRSIQ*TKIKHH
Trigger: GTGGTGTTTGATTTTGGTCCACTGTATACTCCTAAG...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 90 bp AATCAAACACCACAGACAGAATTTGCAGGTGACTCGGGGCTGGGGTaGGAAGCATCAAGAATAGGTTCTGCCTCTGGGAGAAAGGCCACA +
Preference number: 2 (lower is better)
Translates to: NQTPQTEFAGDSGLG*EASRIGSASGRKAT
Trigger: TGTGGCCTTTCTCCCAGAGGCAGAACCTATTCTTGATGCTTCCAACCCCAGCCCCGAGTCACCTGCAAATTCTGTCTGTGGTGTTTGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR TCA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCTCTGTGTCTCCTCCCTaGCAGTGTTTTGGGCTTATC +
Preference number: 2 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVSVSPP*QCFGLI
Trigger: GATAAGCCCAAAACACTGTCAGGGAGGAGACACAGA...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR TCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAAGGGAAGATGAGCTCTaGGCAGAAGGGGGAGGAGCT +
Preference number: 2 (lower is better)
Translates to: CKFSKELASKAQAVITWKREDEL*AEGGGA
Trigger: AGCTCCTCCCCCTTCTGCTCAGAGCTCATCTTCCCT...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR TCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTAGTATCTATCCCTCTTTaGAGTCCCCTTCCACAGGAG +
Preference number: 2 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLVSIPL*SPLPQE
Trigger: CTCCTGTGGAAGGGGACTTCAAAGAGGGATAGATAC...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGGCGGCCACGCTGGGCTaGGACCCAACGCCACAGGGT +
Preference number: 2 (lower is better)
Translates to: PVSKPSILNIVKYSEETVAATLG*DPTPQG
Trigger: ACCCTGTGGCGTTGGGTCGCAGCCCAGCGTGGCCGC...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTTCTCAGCACCTCCCCTaGCAGGGAGTTTGTGAGAAC +
Preference number: 2 (lower is better)
Translates to: CGRAHECIPFEKYLILMGSQHLP*QGVCEN
Trigger: GTTCTCACAAACTCCCTGGCAGGGGAGGTGCTGAGA...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAATCTCAGCACCTCCCCTaGCAGGGAGTTTGTGAGAAC +
Preference number: 2 (lower is better)
Translates to: CKFSKELASKAQAVITWKSQHLP*QGVCEN
Trigger: GTTCTCACAAACTCCCTGGCAGGGGAGGTGCTGAGA...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGGCCGTCGTGCGACCTTaGCTGCAGCCTCAATGTACC +
Preference number: 2 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGAVVRP*LQPQCT
Trigger: GGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGC...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCATCAGAGCAGATCCCTaGCTTTCAGGTCAGGATGTA +
Preference number: 2 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVIRADP*LSGQDV
Trigger: TACATCCTGACCTGAAAGCCAGGGATCTGCTCTGAT...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTCGCAGGGGCCTTTCCTaGAGGAAGATGAGTCTATCC +
Preference number: 2 (lower is better)
Translates to: CGRAHECIPFEKYLILMGRRGLS*RKMSLS
Trigger: GGATAGACTCATCTTCCTCCAGGAAAGGCCCCTGCG...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTTGGTTCCTCTGTGGGTaGATGAGCTGGGTGACCAGA +
Preference number: 2 (lower is better)
Translates to: CGRAHECIPFEKYLILMGWFLCG*MSWVTR
Trigger: TCTGGTCACCCAGCTCATCCACCCACAGAGGAACCA...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGATACAGTTTCTCCTCTaGTTCCTCTGTGGGTGGATG +
Preference number: 2 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLIQFLL*FLCGWM
Trigger: CATCCACCCACAGAGGAACCAGAGGAGAAACTGTAT...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 90 bp TCACCTGTTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTaGGGCCCCAGGGAATTCTGGGAAAATCTTTGCTGCTTTCGGAAG +
Preference number: 2 (lower is better)
Translates to: SPVKKGSACSSYSRS*GPREFWENLCCFRK
Trigger: CTTCCGAAAGCAGCAAAGATTTTCCCAGAATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAACAGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 90 bp AAGTCCCCTTCCACAGGAGATCTGTGTCTCCTCCCTGACAGTGTTTaGGGCTTATCACCTGTTAAGAAAGGGTCTGCCTGCTCATCTTAT +
Preference number: 2 (lower is better)
Translates to: KSPSTGDLCLLPDSV*GLSPVKKGSACSSY
Trigger: ATAAGATGAGCAGGCAGACCCTTTCTTAACAGGTGATAAGCCCAAAACACTGTCAGGGAGGAGACACAGATCTCCTGTGGAAGGGGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR TCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACTCTGTGTCTCCTCCCTaGCAGTGTTTTGGGCTTATC +
Preference number: 2 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDSVSPP*QCFGLI
Trigger: GATAAGCCCAAAACACTGTCAGGGAGGAGACACAGA...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTAACTCCAAGGCAACTCTaGAAGACACACTCCAACAAC +
Preference number: 2 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLTPRQL*KTHSNN
Trigger: GTTGTTGGAGTGTGTCTTGCAGAGTTGCCTTGGAGT...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGCTTATTCTCGTTCCTTaGGCCCCAGGGAATTCTGGG +
Preference number: 2 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVLILVP*APGNSG
Trigger: CCCAGAATTCCCTGGGGCCCAAGGAACGAGAATAAG...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTTACAGGGAATCTGCTTaGGTACTGATGCCACCTCCC +
Preference number: 2 (lower is better)
Translates to: CGRAHECIPFEKYLILMGYRESA*VLMPPP
Trigger: GGGAGGTGGCATCAGTACCCAAGCAGATTCCCTGTA...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTTGCAGTTTGCCACTCTaGCTGCCTTGGGAACGGAGG +
Preference number: 2 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFCSLPL*LPWERR
Trigger: CCTCCGTTCCCAAGGCAGGCAGAGTGGCAAACTGCA...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTCCCTGACAGTGTTTTaGGCTTATCACCTGTTAAGA +
Preference number: 2 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLSLTVF*AYHLLR
Trigger: TCTTAACAGGTGATAAGCCCAAAACACTGTCAGGGA...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATCCCCTGGTCACGACATaGTCCTCAAGTGATTGCTCT +
Preference number: 2 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNPLVTT*SSSDCS
Trigger: AGAGCAATCACTTGAGGACCATGTCGTGACCAGGGG...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTTCTCAGCACCTCCCCTaGCAGGGAGTTTGTGAGAAC +
Preference number: 2 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFSQHLP*QGVCEN
Trigger: GTTCTCACAAACTCCCTGGCAGGGGAGGTGCTGAGA...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTGGCCCCAGGGAATTCTaGGAAAATCTTTGCTGCTTT +
Preference number: 2 (lower is better)
Translates to: CGRAHECIPFEKYLILMGGPREF*ENLCCF
Trigger: AAAGCAGCAAAGATTTTCCCAGAATTCCCTGGGGCC...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTATCCCTGACAGTGTTTTaGGCTTATCACCTGTTAAGA +
Preference number: 2 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLSLTVF*AYHLLR
Trigger: TCTTAACAGGTGATAAGCCCAAAACACTGTCAGGGA...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 90 bp TGTAATCTCCCTATAGTCCTGCAGCCAGAAAGTGCTTTCTGTTCTTaGAAACCCAGGGATTTAACACAACAACCCCAGATAGCACAGGAG +
Preference number: 2 (lower is better)
Translates to: CNLPIVLQPESAFCS*KPRDLTQQPQIAQE
Trigger: CTCCTGTGCTATCTGGGGTTGTTGTGTTAAATCCCTGGGTTTCAAAGAACAGAAAGCACTTTCTGGCTGCAGGACTATAGGGAGATTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTAAGAAAGGGTCTGCCTaGTCATCTTATTCTCGTTCC +
Preference number: 2 (lower is better)
Translates to: CGRAHECIPFEKYLILMGKKGSA*SSYSRS
Trigger: GGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTT...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAATTTCTACCATGCTCTaGCTACAGGGAATCTGCTTG +
Preference number: 2 (lower is better)
Translates to: CKFSKELASKAQAVITWKISTML*LQGICL
Trigger: CAAGCAGATTCCCTGTAGGCAGAGCATGGTAGAAAT...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAAAGGCTGGGAGGGTCTaGTGTTGGGAAATATTTTGT +
Preference number: 2 (lower is better)
Translates to: CKFSKELASKAQAVITWKKAGRV*CWEIFC
Trigger: ACAAAATATTTCCCAACAGCAGACCCTCCCAGCCTT...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATATCAAGAATAGGTTCTaGCTCTGGGAGAAAGGCCAC +
Preference number: 2 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNIKNRF*LWEKGH
Trigger: GTGGCCTTTCTCCCAGAGGCAGAACCTATTCTTGAT...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTCTTATTCTCGTTCCTTaGGCCCCAGGGAATTCTGGG +
Preference number: 2 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFLILVP*APGNSG
Trigger: CCCAGAATTCCCTGGGGCCCAAGGAACGAGAATAAG...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR TCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAACTACTAAGTCAGAACTaGGATATTGGTCTCCCGTTA +
Preference number: 2 (lower is better)
Translates to: CKFSKELASKAQAVITWKLLSQN*DIGLPL
Trigger: TAACGGGAGACCAATATCTCAGTTCTGACTTAGTAG...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATAAGGCTGGGAGGGTCTaGTGTTGGGAAATATTTTGT +
Preference number: 2 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNKAGRV*CWEIFC
Trigger: ACAAAATATTTCCCAACAGCAGACCCTCCCAGCCTT...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTTTTGGAGGGGAAATATaGGCTTTAAGTACTCAGGCT +
Preference number: 2 (lower is better)
Translates to: CGRAHECIPFEKYLILMGFGGEI*ALSTQA
Trigger: AGCCTGAGTACTTAAAGCCCATATTTCCCCTCCAAA...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAACAGGAAGGAGAAGATaGGGTAAAGACCTTTTAGAG +
Preference number: 2 (lower is better)
Translates to: CKFSKELASKAQAVITWKTGRRR*GKDLLE
Trigger: CTCTAAAAGGTCTTTACCCCATCTTCTCCTTCCTGT...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAATCCCTGACAGTGTTTTaGGCTTATCACCTGTTAAGA +
Preference number: 2 (lower is better)
Translates to: CKFSKELASKAQAVITWKSLTVF*AYHLLR
Trigger: TCTTAACAGGTGATAAGCCCAAAACACTGTCAGGGA...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR GCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGATTTCTACCATGCTCTaGCTACAGGGAATCTGCTTG +
Preference number: 2 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGISTML*LQGICL
Trigger: CAAGCAGATTCCCTGTAGGCAGAGCATGGTAGAAAT...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTATCAGAGCAGATCCCTaGCTTTCAGGTCAGGATGTA +
Preference number: 2 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFIRADP*LSGQDV
Trigger: TACATCCTGACCTGAAAGCCAGGGATCTGCTCTGAT...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR TCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGCTACTAAGTCAGAACTaGGATATTGGTCTCCCGTTA +
Preference number: 2 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGLLSQN*DIGLPL
Trigger: TAACGGGAGACCAATATCTCAGTTCTGACTTAGTAG...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGACAGGAAGGAGAAGATaGGGTAAAGACCTTTTAGAG +
Preference number: 2 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGTGRRR*GKDLLE
Trigger: CTCTAAAAGGTCTTTACCCCATCTTCTCCTTCCTGT...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATGGGAGGGTCTGCTGTTaGGAAATATTTTGTTTTTAC +
Preference number: 2 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNGRVCC*EIFCFY
Trigger: GTAAAAACAAAATATTTCCCAACAGCAGACCCTCCC...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTACACAGACTTTGTTTTaGAGGGGAAATATGGGCTTT +
Preference number: 2 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFTQTLF*RGNMGF
Trigger: AAAGCCCATATTTCCCCTCCAAAACAAAGTCTGTGT...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 72 bp GATAGCACAGGAGAACACAGGGAGGGTCCTCTAGGCTaGCTGCTCACATGCCTGGCTGCTGAGCACCCCCTG +
Preference number: 3 (lower is better)
Translates to: DSTGEHREGPLG*LLTCLAAEHPL
Trigger: CAGGGGGTGCTCAGCAGCCAGGCATGTGAGCAGTCAGCCTAGAGGACCCTCCCTGTGTTCTCCTGTGCTATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 72 bp TTGCCACTCTGCCTGCCTTGGGAACGGAGGCCGTCGTaGGACCTTGGCTGCAGCCTCAATGTACCGAACTCA +
Preference number: 3 (lower is better)
Translates to: LPLCLPWERRPS*DLGCSLNVPNS
Trigger: TGAGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAGGCAGGCAGAGTGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 72 bp GGGAAGATGAGCTCTGAGCAGAAGGGGGAGGAGCTGTaGGTGTTGACCGTGCTGCCTGCGCCAATCAGTGTG +
Preference number: 3 (lower is better)
Translates to: GKMSSEQKGEEL*VLTVLPAPISV
Trigger: CACACTGATTGGCGCAGGCAGCACGGTCAACACGCACAGCTCCTCCCCCTTCTGCTCAGAGCTCATCTTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp GCTGACTGCTCACATGCCTGGCTGCTGAGCACCCCCTaGTCACGACATGGTCCTCAAGTGATTGCTCTCCCC +
Preference number: 3 (lower is better)
Translates to: ADCSHAWLLSTP*SRHGPQVIALP
Trigger: GGGGAGAGCAATCACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCAGTCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 72 bp GAGCACCCCCTGGTCACGACATGGTCCTCAAGTGATTaGTCTCCCCATGCCTGCTGTCTCCTCCAGCACCTA +
Preference number: 3 (lower is better)
Translates to: EHPLVTTWSSSD*SPHACCLLQHL
Trigger: TAGGTGCTGGAGGAGACAGCAGGCATGGGGAGAGCAATCACTTGAGGACCATGTCGTGACCAGGGGGTGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp ACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATaGTCCTCAAGTGATTGCTCTCCCCATGCCTGCTGT +
Preference number: 3 (lower is better)
Translates to: TCLAAEHPLVTT*SSSDCSPHACC
Trigger: ACAGCAGGCATGGGGAGAGCAATCACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp GGCCCCCGCTCCTTCGAGCCTATACAGTTTCTCCTCTaGTTCCTCTGTGGGTGGATGAGCTGGGTGACCAGA +
Preference number: 3 (lower is better)
Translates to: GPRSFEPIQFLL*FLCGWMSWVTR
Trigger: TCTGGTCACCCAGCTCATCCACCCACAGAGGAACCAGAGGAGAAACTGTATAGGCTCGAAGGAGCGGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp CACAGTGGTCAGGCACATGCACGCAGGGGCCTTTCCTaGAGGAAGATGAGTCTATCCTTGCTAGGACGAGGG +
Preference number: 3 (lower is better)
Translates to: HSGQAHARRGLS*RKMSLSLLGRG
Trigger: CCCTCGTCCTAGCAAGGATAGACTCATCTTCCTCCAGGAAAGGCCCCTGCGTGCATGTGCCTGACCACTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp TTTTTGTGGGTGCCGAGTGCCGCACAAGACTGGGCCTaGAGTGCCATCTCACCAGGCCTCATCGAAGACACA +
Preference number: 3 (lower is better)
Translates to: FLWVPSAAQDWA*SAISPGLIEDT
Trigger: TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGCACTCGGCACCCACAAAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp GAGGTCTTTTTGCCTACGGTTCCTGAAGCTACCCATTaGTTCGTCGGAGTCCCCAGGGTGCCCATTCAGGCT +
Preference number: 3 (lower is better)
Translates to: EVFLPTVPEATH*FVGVPRVPIQA
Trigger: AGCCTGAATGGGCACCCTGGGGACTCCGACGAACCAATGGGTAGCTTCAGGAACCGTAGGCAAAAAGACCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp TGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATGGTCCTCAAGTGATTCTGGGAAAATCTTaGCTGCTTTCGGAAGGCCAC +
Preference number: 3 (lower is better)
Translates to: CSHAWLLSTPWSRHGPQVILGKS*LLSEGH
Trigger: GTGGCCTTCCGAAAGCAGCAAAGATTTTCCCAGAAT...CACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 72 bp CTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTaGGGAGGTCCCGACAGTTCATGTCTGTCTGTCTGT +
Preference number: 3 (lower is better)
Translates to: LRPNATGSLMNV*GGPDSSCLSVC
Trigger: ACAGACAGACAGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 72 bp CTCTCTTTCTCAGCACCTCCCCTGCCAGGGAGTTTGTaGGAACAAGATTGGGAGGCAGTGTCTCTCATGGCT +
Preference number: 3 (lower is better)
Translates to: LSFSAPPLPGSL*EQDWEAVSLMA
Trigger: AGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGCAGGGGAGGTGCTGAGAAAGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 72 bp AGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTaGTCACTTGGAAAGATGGTCCCCCAGGCAGAGGTC +
Preference number: 3 (lower is better)
Translates to: SSPKSWLQRLRL*SLGKMVPQAEV
Trigger: GACCTCTGCCTGGGGGACCATCTTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 72 bp CTCGGGGCTGGGGTTGGAAGCATCAAGAATAGGTTCTaGCTCTGGGAGAAAGGCCACATTACTCATAGTAGG +
Preference number: 3 (lower is better)
Translates to: LGAGVGSIKNRF*LWEKGHITHSR
Trigger: CCTACTATGAGTAATGTGGCCTTTCTCCCAGAGGCAGAACCTATTCTTGATGCTTCCAACCCCAGCCCCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACAAGTGCTTTCTGTTCTTaGAAACCCAGGGATTTAACA +
Preference number: 3 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTSAFCS*KPRDLT
Trigger: TGTTAAATCCCTGGGTTTCAAAGAACAGAAAGCACT...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATAGAGCAGGGAGCTGCTaGTGGGAGGGCTCACGAGTG +
Preference number: 3 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNRAGSC*WEGSRV
Trigger: CACTCGTGAGCCCTCCCACAAGCAGCTCCCTGCTCT...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGGAGGAGCTGTGCGTGTaGACCGTGCTGCCTGCGCCA +
Preference number: 3 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGEELCV*TVLPAP
Trigger: TGGCGCAGGCAGCACGGTCAACACGCACAGCTCCTC...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGAGAGCAGGGAGCTGCTaGTGGGAGGGCTCACGAGTG +
Preference number: 3 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGRAGSC*WEGSRV
Trigger: CACTCGTGAGCCCTCCCACAAGCAGCTCCCTGCTCT...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 72 bp ACACAGGAAGGTCACCACCAAAGGAAGAGGTCTTTTTaGCTACGGTTCCTGAAGCTACCCATTGGTTCGTCG +
Preference number: 3 (lower is better)
Translates to: TQEGHHQRKRSF*LRFLKLPIGSS
Trigger: CGACGAACCAATGGGTAGCTTCAGGAACCGTAGGCAAAAAGACCTCTTCCTTTGGTGGTGACCTTCCTGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp CCACAGGAGATCTGTGTCTCCTCCCTGACAGTGTTTTaGGCTTATCACCTGTTAAGAAAGGGTCTGCCTGCT +
Preference number: 3 (lower is better)
Translates to: PQEICVSSLTVF*AYHLLRKGLPA
Trigger: AGCAGGCAGACCCTTTCTTAACAGGTGATAAGCCCAAAACACTGTCAGGGAGGAGACACAGATCTCCTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp GTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATaGCTATGTCAAAGGCCAAGACAGCCTAGGAGCCCA +
Preference number: 3 (lower is better)
Translates to: VCENKIGRQCLS*LCQRPRQPRSP
Trigger: TGGGCTCCTAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGCTCCCTGACAGTGTTTaGGGCTTATCACCTGTTAAG +
Preference number: 3 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLLPDSV*GLSPVK
Trigger: CTTAACAGGTGATAAGCCCAAAACACTGTCAGGGAG...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 72 bp TTCCAGTACAGAGCTCATCCAGTATCTATCCCTCTTTaGAGTCCCCTTCCACAGGAGATCTGTGTCTCCTCC +
Preference number: 3 (lower is better)
Translates to: FQYRAHPVSIPL*SPLPQEICVSS
Trigger: GGAGGAGACACAGATCTCCTGTGGAAGGGGACTTCAAAGAGGGATAGATACTGGATGAGCTCTGTACTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR GCA 72 bp GTTTTGGGCTTATCACCTGTTAAGAAAGGGTCTGCCTaGTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAA +
Preference number: 3 (lower is better)
Translates to: VLGLSPVKKGSA*SSYSRSLGPRE
Trigger: TTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAACAGGTGATAAGCCCAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp AGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTaGGCCCCAGGGAATTCTGGGAAAATCTTTGCTGCT +
Preference number: 3 (lower is better)
Translates to: RKGLPAHLILVP*APGNSGKIFAA
Trigger: AGCAGCAAAGATTTTCCCAGAATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp GGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAGATaGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGG +
Preference number: 3 (lower is better)
Translates to: GFKGSGCDHLER*SPRQRSEYLCW
Trigger: CCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATGACTCGGGGCTGGGGTaGGAAGCATCAAGAATAGGT +
Preference number: 3 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNDSGLG*EASRIG
Trigger: ACCTATTCTTGATGCTTCCAACCCCAGCCCCGAGTC...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR TCA 72 bp GGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTaGCGTTCGGGCTGGACCTTGTGCCTTGTTAAGCCT +
Preference number: 3 (lower is better)
Translates to: GRVCCWEIFCFY*RSGWTLCLVKP
Trigger: AGGCTTAACAAGGCACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CCA 72 bp CCTCTAACGAAGGCTAACGGAGCAGTCGCTGAAGGCTaGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTA +
Preference number: 3 (lower is better)
Translates to: PLTKANGAVAEG*EGLLLGNILFL
Trigger: TAAAAACAAAATATTTCCCAACAGCAGACCCTCCCAGCCTTCAGCGACTGCTCCGTTAGCCTTCGTTAGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTACGTCCTTTCAGTCATaGCACATTGTGAGCTCGCAC +
Preference number: 3 (lower is better)
Translates to: CGRAHECIPFEKYLILMGTSFQS*HIVSSH
Trigger: GTGCGAGCTCACAATGTGCAATGACTGAAAGGACGT...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAATTCTGGGAAAATCTTaGCTGCTTTCGGAAGGCCAC +
Preference number: 3 (lower is better)
Translates to: CKFSKELASKAQAVITWKILGKS*LLSEGH
Trigger: GTGGCCTTCCGAAAGCAGCAAAGATTTTCCCAGAAT...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACTTTGTGAGAACAAGATaGGGAGGCAGTGTCTCTCAT +
Preference number: 3 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDFVRTR*GGSVSH
Trigger: ATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAA...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATAGTATCTATCCCTCTTaGAAGTCCCCTTCCACAGGA +
Preference number: 3 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNSIYPS*KSPSTG
Trigger: TCCTGTGGAAGGGGACTTCAAAGAGGGATAGATACT...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGACGTCCTTTCAGTCATaGCACATTGTGAGCTCGCAC +
Preference number: 3 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGTSFQS*HIVSSH
Trigger: GTGCGAGCTCACAATGTGCAATGACTGAAAGGACGT...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTCTCCCTGACAGTGTTTaGGGCTTATCACCTGTTAAG +
Preference number: 3 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFLPDSV*GLSPVK
Trigger: CTTAACAGGTGATAAGCCCAAAACACTGTCAGGGAG...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTAGTGCTTTCTGTTCTTaGAAACCCAGGGATTTAACA +
Preference number: 3 (lower is better)
Translates to: CGRAHECIPFEKYLILMGSAFCS*KPRDLT
Trigger: TGTTAAATCCCTGGGTTTCAAAGAACAGAAAGCACT...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATCTGTTGGGAAATATTTaGTTTTTACTGACGTTCGGG +
Preference number: 3 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNLLGNI*FLLTFG
Trigger: CCCGAACGTCAGTAAAAACAAAATATTTCCCAACAG...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGCTGTTGGGAAATATTTaGTTTTTACTGACGTTCGGG +
Preference number: 3 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGLLGNI*FLLTFG
Trigger: CCCGAACGTCAGTAAAAACAAAATATTTCCCAACAG...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR-3UTR CAA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGAGTGCTTTCTGTTCTTaGAAACCCAGGGATTTAACA +
Preference number: 3 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGSAFCS*KPRDLT
Trigger: TGTTAAATCCCTGGGTTTCAAAGAACAGAAAGCACT...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGCCACCATCTTCCGCCTaGGCTGCCGCGGGGCTCCCC +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQPPSSA*AAAGLP
Trigger: GGGGAGCCCCGCGGCAGCTCAGGCGGAAGATGGTGG...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCGCCTCCGGGCCGAGTTaGGTTGCTTCAGGGACGGCA +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSASGPS*VASGTA
Trigger: TGCCGTCCCTGAAGCAACTCAACTCGGCCCGGAGGC...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGGCGGGCTACCGGGGCTaGTGTCATCAGGGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQAGYRG*CHQGPE
Trigger: CTCAGGCCCCTGATGACAGCAGCCCCGGTAGCCCGC...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGAGGGCAGGCGTGTGCTaGACACTGGCCTCGTCGGGC +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQRAGVC*TLASSG
Trigger: GCCCGACGAGGCCAGTGTCCAGCACACGCCTGCCCT...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTGGCCGGGGTCGCAGGTaGACTCCACAATGGTGCCGA +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTGRGRR*TPQWCR
Trigger: TCGGCACCATTGTGGAGTTCACCTGCGACCCCGGCC...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCGGCCCTTGCCAAAGATaGGGCCTGCAGGGTCGGAGT +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSGPCQR*GLQGRS
Trigger: ACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCC...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGAGGGGTGGGAGTACATaGGGGGTAGGCGGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQRGGST*GVGGGW
Trigger: CCAGCCTCCGCCTACCCCTCATGTACTCCCACCCCT...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATGGTCCTCAAGTGGCCACCCCGCCCGAGTaGAGATCCATCACCGTGACC +
Preference number: 4 (lower is better)
Translates to: CSHAWLLSTPWSRHGPQVATPPE*RSITVT
Trigger: GGTCACGGTGATGGATCTGCACTCGGGCGGGGTGGC...CACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCAGGGCAGGCGTGTGCTaGACACTGGCCTCGTCGGGC +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFRAGVC*TLASSG
Trigger: GCCCGACGAGGCCAGTGTCCAGCACACGCCTGCCCT...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGGGGCGCGATCTGCAGTaGCGCAGGCGCCGTGGGCTG +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMGRDLQ*RRRRGL
Trigger: CAGCCCACGGCGCCTGCGCCACTGCAGATCGCGCCC...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGATGGTGGACGTGGTaGTCTCCTGGCTCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSRWWTW*SPGSPR
Trigger: CCGAGGAGAGCCAGGAGACCACCACGTCCACCATCG...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCACACCGCAGAGAGCTaGGGCCTGCTCCGTGGTGAT +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSHTAES*GLLRGD
Trigger: ATCACCACGGAGCAGGCCCCAGCTCTCTGCGGTGTG...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTCCACCATCTTCCGCCTaGGCTGCCGCGGGGCTCCCC +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSPPSSA*AAAGLP
Trigger: GGGGAGCCCCGCGGCAGCTCAGGCGGAAGATGGTGG...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTCCTCCACATGGGGCTaGGCAGACAGGCTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQSSTWG*ADRLLA
Trigger: AGCCAGGAGCCTGTCTGCTCAGCCCCATGTGGAGGA...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTTCCTCCACATGGGGCTaGGCAGACAGGCTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTSSTWG*ADRLLA
Trigger: AGCCAGGAGCCTGTCTGCTCAGCCCCATGTGGAGGA...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCGGCCGGGGTCGCAGGTaGACTCCACAATGGTGCCGA +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFGRGRR*TPQWCR
Trigger: TCGGCACCATTGTGGAGTTCACCTGCGACCCCGGCC...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGGGCCCTTGCCAAAGATaGGGCCTGCAGGGTCGGAGT +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQGPCQR*GLQGRS
Trigger: ACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCC...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCGTTCCCACCTTCCAGTaGGGACTCTGCTGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSVPTFQ*GLCCRF
Trigger: GAAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAAC...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTCGGGCCGAGTTGAGTTaGTTCAGGGACGGCAGACCC +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTRAELS*FRDGRP
Trigger: GGGTCTGCCGTCCCTGAAGCAACTCAACTCGGCCCG...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGCACGCAGCTTCGTGGTaGCAGAGGCAGGAGACCCCA +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQHAASW*QRQETP
Trigger: TGGGGTCTCCTGCCTCTGCCACCACGAAGCTGCGTG...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTGACGTGGTGGTCTCCTaGCTCTCCTCGGAGGCAGAC +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTDVVVS*LSSEAD
Trigger: GTCTGCCTCCGAGGAGAGCCAGGAGACCACCACGTC...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACACACACCGCAGAGAGCTaGGGCCTGCTCCGTGGTGAT +
Preference number: 4 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTHTAES*GLLRGD
Trigger: ATCACCACGGAGCAGGCCCCAGCTCTCTGCGGTGTG...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTCGGTTCCCGGGAAACTaGGGGAGAGAACTCGGCCGA +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTRFPGN*GRELGR
Trigger: TCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCG...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGCGGTTCCCGGGAAACTaGGGGAGAGAACTCGGCCGA +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQRFPGN*GRELGR
Trigger: TCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCG...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACACGGTTCCCGGGAAACTaGGGGAGAGAACTCGGCCGA +
Preference number: 4 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTRFPGN*GRELGR
Trigger: TCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCG...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGAAGGCGGAAGCTGCCTaGCCCTGGTCCGACGTGAAC +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQKAEAA*PWSDVN
Trigger: GTTCACGTCGGACCAGGGCCAGGCAGCTTCCGCCTT...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGCCCTGTTCCAGAGAGTaGCCGGGGTCGCAGGTGAAC +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQPCSRE*PGSQVN
Trigger: GTTCACCTGCGACCCCGGCCACTCTCTGGAACAGGG...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCTGTGGCCAAAGTACTaGCCCAGGACGTGGGGCACA +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSLWPKY*PRTWGT
Trigger: TGTGCCCCACGTCCTGGGCCAGTACTTTGGCCACAG...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGCCACCATCTTCCGCCTaGGCTGCCGCGGGGCTCCCC +
Preference number: 4 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLPPSSA*AAAGLP
Trigger: GGGGAGCCCCGCGGCAGCTCAGGCGGAAGATGGTGG...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCAGTGGAACTGGATGGTaGGGTCCGGTGTGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSSGTGW*GPVWRS
Trigger: ACTCCTCCACACCGGACCTCACCATCCAGTTCCACT...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACAGCACAGGGTCTGAAATaGGGCGGGTGGAGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTAQGLK*GGWSAP
Trigger: TGGAGCACTCCACCCGCCTCATTTCAGACCCTGTGC...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGGTTCCCACCTTCCAGTaGGGACTCTGCTGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQVPTFQ*GLCCRF
Trigger: GAAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAAC...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCCGGGCCGAGTTGAGTTaGTTCAGGGACGGCAGACCC +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFRAELS*FRDGRP
Trigger: GGGTCTGCCGTCCCTGAAGCAACTCAACTCGGCCCG...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGGCCAGGGGCCTCAGCTaGCTCCGGGCCGAGTTGAGT +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMARGLS*LRAELS
Trigger: ACTCAACTCGGCCCGGAGGCAGCTGAGGCCCCTGGC...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGGCGGGCTACCGGGGCTaGTGTCATCAGGGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMAGYRG*CHQGPE
Trigger: CTCAGGCCCCTGATGACAGCAGCCCCGGTAGCCCGC...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTGGTGTTGGTGGGGCTaGGGATCACCTGGCCCTCTA +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQWCWWG*GSPGPL
Trigger: TAGAGGGCCAGGTGATCCGCAGCCCCACCAACACCA...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCACGGCTGTCCCAGAATaGACCGGATGGTCACTTCGC +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSTAVPE*TGWSLR
Trigger: GCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGT...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGCAGTGCTTCTTGGGATaGCAGGAGACCTGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQQCFLG*QETWGC
Trigger: GCAGCCCCAGGTCTCCTGCCATCCCAAGAAGCACTG...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGAGGGCAGGCGTGTGCTaGACACTGGCCTCGTCGGGC +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMRAGVC*TLASSG
Trigger: GCCCGACGAGGCCAGTGTCCAGCACACGCCTGCCCT...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGGGGCGCGATCTGCAGTaGCGCAGGCGCCGTGGGCTG +
Preference number: 4 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLGRDLQ*RRRRGL
Trigger: CAGCCCACGGCGCCTGCGCCACTGCAGATCGCGCCC...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCGGGCGCGATCTGCAGTaGCGCAGGCGCCGTGGGCTG +
Preference number: 4 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVGRDLQ*RRRRGL
Trigger: CAGCCCACGGCGCCTGCGCCACTGCAGATCGCGCCC...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCGACGTGGTGGTCTCCTaGCTCTCCTCGGAGGCAGAC +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFDVVVS*LSSEAD
Trigger: GTCTGCCTCCGAGGAGAGCCAGGAGACCACCACGTC...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCCGATGGTGGACGTGGTaGTCTCCTGGCTCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFRWWTW*SPGSPR
Trigger: CCGAGGAGAGCCAGGAGACCACCACGTCCACCATCG...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCCACACCGCAGAGAGCTaGGGCCTGCTCCGTGGTGAT +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFHTAES*GLLRGD
Trigger: ATCACCACGGAGCAGGCCCCAGCTCTCTGCGGTGTG...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTCAGAGATGGTGTTGGTaGGGCTGCGGATCACCTGGC +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTQRWCW*GCGSPG
Trigger: GCCAGGTGATCCGCAGCCCCACCAACACCATCTCTG...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTGCAGGTCAGCGTCTTaGCTCCCTGCAGCTCGTAGC +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQCRSAS*LPAARS
Trigger: GCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCA...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCGAACTCGGCCGATGGTaGCATTGTGCACTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSELGRW*HCALLL
Trigger: GAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTC...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCAAGGCGGAAGCTGCCTaGCCCTGGTCCGACGTGAAC +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFKAEAA*PWSDVN
Trigger: GTTCACGTCGGACCAGGGCCAGGCAGCTTCCGCCTT...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACACTGTGGCCAAAGTACTaGCCCAGGACGTGGGGCACA +
Preference number: 4 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTLWPKY*PRTWGT
Trigger: TGTGCCCCACGTCCTGGGCCAGTACTTTGGCCACAG...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACACCTGCAGGGTCGGAGTaGAACTGGATGGTGAGGTCC +
Preference number: 4 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTPAGSE*NWMVRS
Trigger: GGACCTCACCATCCAGTTCCACTCCGACCCTGCAGG...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTAGTGGAACTGGATGGTaGGGTCCGGTGTGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTSGTGW*GPVWRS
Trigger: ACTCCTCCACACCGGACCTCACCATCCAGTTCCACT...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGGGCCCTTGCCAAAGATaGGGCCTGCAGGGTCGGAGT +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQGPCQR*GLQGRS
Trigger: ACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCC...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCGGTCCCATTGGCAGGTaGGGGTGTCACTCCCCACAA +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFGPIGR*GCHSPQ
Trigger: TTGTGGGGAGTGACACCCTCACCTGCCAATGGGACC...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCGCACAGGGTCTGAAATaGGGCGGGTGGAGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFAQGLK*GGWSAP
Trigger: TGGAGCACTCCACCCGCCTCATTTCAGACCCTGTGC...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATGGTCCTCAAGTGCGCGGCTGTAGCAGGTaGGAAGAGAGCTCCCTTCAA +
Preference number: 4 (lower is better)
Translates to: CSHAWLLSTPWSRHGPQVRGCSR*EESSLQ
Trigger: TTGAAGGGAGCTCTCTTCTCACCTGCTACAGCCGCG...CACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTCGCGGCTGTAGCAGGTaGGAAGAGAGCTCCCTTCAA +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTRGCSR*EESSLQ
Trigger: TTGAAGGGAGCTCTCTTCTCACCTGCTACAGCCGCG...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGAGGGGTGGGAGTACATaGGGGGTAGGCGGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMRGGST*GVGGGW
Trigger: CCAGCCTCCGCCTACCCCTCATGTACTCCCACCCCT...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGGCCACCCCGCCCGAGTaGAGATCCATCACCGTGACC +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMATPPE*RSITVT
Trigger: GGTCACGGTGATGGATCTGCACTCGGGCGGGGTGGC...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACAGCCAAAGATGAGGCCTaGAGGGTCGGAGTGGAACTG +
Preference number: 4 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTAKDEA*RVGVEL
Trigger: CAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGC...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATGGTCCTCAAGTGACGGCTGTCCCAGAATaGACCGGATGGTCACTTCGC +
Preference number: 4 (lower is better)
Translates to: CSHAWLLSTPWSRHGPQVTAVPE*TGWSLR
Trigger: GCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGT...CACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTGTGCATCTCTCCCTCTaGACCACCATCTTCCGCCTG +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTVHLSL*TTIFRL
Trigger: CAGGCGGAAGATGGTGGTCCAGAGGGAGAGATGCAC...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGGTGCATCTCTCCCTCTaGACCACCATCTTCCGCCTG +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQVHLSL*TTIFRL
Trigger: CAGGCGGAAGATGGTGGTCCAGAGGGAGAGATGCAC...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGGACGTGGTGGTCTCCTaGCTCTCCTCGGAGGCAGAC +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQDVVVS*LSSEAD
Trigger: GTCTGCCTCCGAGGAGAGCCAGGAGACCACCACGTC...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCTGCAGGTCAGCGTCTTaGCTCCCTGCAGCTCGTAGC +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFCRSAS*LPAARS
Trigger: GCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCA...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCGAGCAGACAGGCTCCTaGCTGCTCCAGTGCGGTTTG +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFEQTGS*LLQCGL
Trigger: CAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTC...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCAGAGAACTCGGCCGATaGTGGCATTGTGCACTGCTC +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSRELGR*WHCALL
Trigger: GAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCT...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCCTGTGGCCAAAGTACTaGCCCAGGACGTGGGGCACA +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFLWPKY*PRTWGT
Trigger: TGTGCCCCACGTCCTGGGCCAGTACTTTGGCCACAG...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTGCCTCCGGGCCGAGTTaGGTTGCTTCAGGGACGGCA +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSASGPS*VASGTA
Trigger: TGCCGTCCCTGAAGCAACTCAACTCGGCCCGGAGGC...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCGCGGTTTGGAGGCATTaGTGCAGGTCAGCGTCTTGG +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFAVWRH*CRSASW
Trigger: CCAAGACGCTGACCTGCATCAATGCCTCCAAACCGC...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCAGTGGAACTGGATGGTaGGGTCCGGTGTGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFSGTGW*GPVWRS
Trigger: ACTCCTCCACACCGGACCTCACCATCCAGTTCCACT...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGGGCCCTTGCCAAAGATaGGGCCTGCAGGGTCGGAGT +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMGPCQR*GLQGRS
Trigger: ACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCC...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGGTTCCCACCTTCCAGTaGGGACTCTGCTGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQVPTFQ*GLCCRF
Trigger: GAAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAAC...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTCCTGGCTGCTCCAGTaGGGTTTGGAGGCATTGATG +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQSWLLQ*GLEALM
Trigger: CATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGA...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCCCGATGGTGGCATTGTaGACTGCTCCTCCACATGGG +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFPMVAL*TAPPHG
Trigger: CCCATGTGGAGGAGCAGTGCACAATGCCACCATCGG...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCGCCAAAGATGAGGCCTaGAGGGTCGGAGTGGAACTG +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFAKDEA*RVGVEL
Trigger: CAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGC...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCGTGCATCTCTCCCTCTaGACCACCATCTTCCGCCTG +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFVHLSL*TTIFRL
Trigger: CAGGCGGAAGATGGTGGTCCAGAGGGAGAGATGCAC...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTGGGCTGAGGGCTGTGTaGGAGTGTGGTCGCCAGTGC +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSGLRAV*ECGRQC
Trigger: GCACTGGCGACCACACTCCCACACAGCCCTCAGCCC...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGGACGTGGTGGTCTCCTaGCTCTCCTCGGAGGCAGAC +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMDVVVS*LSSEAD
Trigger: GTCTGCCTCCGAGGAGAGCCAGGAGACCACCACGTC...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATGGTCCTCAAGTGCCAGTAGAGTCTGGTTaGCCAGGACTGTCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: CSHAWLLSTPWSRHGPQVPVESG*PGLSEW
Trigger: CCACTCTGACAGTCCTGGCCAACCAGACTCTACTGG...CACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGCTTGTACAGGATCTaGTACCCGTTCTCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSRLYRI*YPFSGS
Trigger: ACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCG...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTGAGACCTGGGGCTGCTaGTGTCACCCCCTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSETWGC*CHPLFQ
Trigger: CTGGAAGAGGGGGTGACATCAGCAGCCCCAGGTCTC...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGGCGGTTTGGAGGCATTaGTGCAGGTCAGCGTCTTGG +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQAVWRH*CRSASW
Trigger: CCAAGACGCTGACCTGCATCAATGCCTCCAAACCGC...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTTCCTCCACATGGGGCTaGGCAGACAGGCTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSSSTWG*ADRLLA
Trigger: AGCCAGGAGCCTGTCTGCTCAGCCCCATGTGGAGGA...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCGGCCGGGGTCGCAGGTaGACTCCACAATGGTGCCGA +
Preference number: 4 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVGRGRR*TPQWCR
Trigger: TCGGCACCATTGTGGAGTTCACCTGCGACCCCGGCC...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGGGCCGGGGTCGCAGGTaGACTCCACAATGGTGCCGA +
Preference number: 4 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLGRGRR*TPQWCR
Trigger: TCGGCACCATTGTGGAGTTCACCTGCGACCCCGGCC...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATGCGGGCTACCGGGGCTaGTGTCATCAGGGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNAGYRG*CHQGPE
Trigger: CTCAGGCCCCTGATGACAGCAGCCCCGGTAGCCCGC...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTGGTGTTGGTGGGGCTaGGGATCACCTGGCCCTCTA +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMWCWWG*GSPGPL
Trigger: TAGAGGGCCAGGTGATCCGCAGCCCCACCAACACCA...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGGCCACCCCGCCCGAGTaGAGATCCATCACCGTGACC +
Preference number: 4 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLATPPE*RSITVT
Trigger: GGTCACGGTGATGGATCTGCACTCGGGCGGGGTGGC...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCACAGTCTTCACCTTCTaGATAGGGCTCTGGCCAGTT +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSTVFTF*IGLWPV
Trigger: AACTGGCCAGAGCCCTATGCAGAAGGTGAAGACTGT...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGGTGCATCTCTCCCTCTaGACCACCATCTTCCGCCTG +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQVHLSL*TTIFRL
Trigger: CAGGCGGAAGATGGTGGTCCAGAGGGAGAGATGCAC...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATAGGGCAGGCGTGTGCTaGACACTGGCCTCGTCGGGC +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNRAGVC*TLASSG
Trigger: GCCCGACGAGGCCAGTGTCCAGCACACGCCTGCCCT...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGCAGAGATGGTGTTGGTaGGGCTGCGGATCACCTGGC +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMQRWCW*GCGSPG
Trigger: GCCAGGTGATCCGCAGCCCCACCAACACCATCTCTG...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACATTCTGCATAGGGCTCTaGCCAGTTTGGAGACAGCAC +
Preference number: 4 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTFCIGL*PVWRQH
Trigger: GTGCTGTCTCCAAACTGGCCAGAGCCCTATGCAGAA...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCCAACTGAGGTCCCATTaGCAGGTGAGGGTGTCACTC +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFQLRSH*QVRVSL
Trigger: GAGTGACACCCTCACCTGCCAATGGGACCTCAGTTG...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 72 bp ATGAGCTCTGAGCAGAAGGGGGAGGAGCTGTGCGTGTaGACCGTGCTGCCTGCGCCAATCAGTGTGAAGGAT +
Preference number: 4 (lower is better)
Translates to: MSSEQKGEELCV*TVLPAPISVKD
Trigger: ATCCTTCACACTGATTGGCGCAGGCAGCACGGTCAACACGCACAGCTCCTCCCCCTTCTGCTCAGAGCTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCTGGGGTCCGATGTGGTaGAATTCCCATTTTGGATGT +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSWGPMW*NSHFGC
Trigger: ACATCCAAAATGGGAATTTCACCACATCGGACCCCA...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTGTTCCCACCTTCCAGTaGGGACTCTGCTGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSVPTFQ*GLCCRF
Trigger: GAAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAAC...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTTTCCATTGCTTCCAGTaGTTCTTGGGATGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTFHCFQ*FLGWQE
Trigger: CTCCTGCCATCCCAAGAAGCACTGGAAGCAATGGAA...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGCCGATGGTGGCATTGTaGACTGCTCCTCCACATGGG +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMPMVAL*TAPPHG
Trigger: CCCATGTGGAGGAGCAGTGCACAATGCCACCATCGG...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCTCTGCTGCCGCTTCTaGTTCCAATGCATGTTCAAA +
Preference number: 4 (lower is better)
Translates to: RWAATQRHRVSDECLRRSLCCRF*FQCMFK
Trigger: TTTGAACATGCATTGGAAGCAGAAGCGGCAGCAGAG...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079491.14
ENSMUST00000200575.5
CDS-3UTR CCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATGGGCGCGATCTGCAGTaGCGCAGGCGCCGTGGGCTG +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNGRDLQ*RRRRGL
Trigger: CAGCCCACGGCGCCTGCGCCACTGCAGATCGCGCCC...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCCACACCGCAGAGAGCTaGGGCCTGCTCCGTGGTGAT +
Preference number: 4 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVHTAES*GLLRGD
Trigger: ATCACCACGGAGCAGGCCCCAGCTCTCTGCGGTGTG...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATGGTCCTCAAGTGTCTACCAGTAGAGTCTaGTTGGCCAGGACTGTCAGA +
Preference number: 4 (lower is better)
Translates to: CSHAWLLSTPWSRHGPQVSTSRV*LARTVR
Trigger: TCTGACAGTCCTGGCCAACCAGACTCTACTGGTAGA...CACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACATCTACCAGTAGAGTCTaGTTGGCCAGGACTGTCAGA +
Preference number: 4 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTSTSRV*LARTVR
Trigger: TCTGACAGTCCTGGCCAACCAGACTCTACTGGTAGA...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTTGCAGGTCAGCGTCTTaGCTCCCTGCAGCTCGTAGC +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSCRSAS*LPAARS
Trigger: GCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCA...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTGAGCAGACAGGCTCCTaGCTGCTCCAGTGCGGTTTG +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSEQTGS*LLQCGL
Trigger: CAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTC...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGCCCTGTTCCAGAGAGTaGCCGGGGTCGCAGGTGAAC +
Preference number: 4 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLPCSRE*PGSQVN
Trigger: GTTCACCTGCGACCCCGGCCACTCTCTGGAACAGGG...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTCCTGCAGGGTCGGAGTaGAACTGGATGGTGAGGTCC +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSPAGSE*NWMVRS
Trigger: GGACCTCACCATCCAGTTCCACTCCGACCCTGCAGG...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCCTGACCAGCTCTGTGTaGGAAGTAGTTTTCCAGCCG +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFLTSSV*EVVFQP
Trigger: CGGCTGGAAAACTACTTCCCACACAGAGCTGGTCAG...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCCGCTTGTACAGGATCTaGTACCCGTTCTCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFRLYRI*YPFSGS
Trigger: ACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCG...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTAGGGGCCCACTCCAATaGGACGGCTGTCCCAGAATG +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSRGPLQ*DGCPRM
Trigger: CATTCTGGGACAGCCGTCCCATTGGAGTGGGCCCCT...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 72 bp GTAATTTCTACCATGCTCTGCCTACAGGGAATCTGCTaGGGTACTGATGCCACCTCCCCACCCCCTCAGCCC +
Preference number: 4 (lower is better)
Translates to: VISTMLCLQGIC*GTDATSPPPQP
Trigger: GGGCTGAGGGGGTGGGGAGGTGGCATCAGTACCCAAGCAGATTCCCTGTAGGCAGAGCATGGTAGAAATTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTATCCTCCACATGGGGCTaGGCAGACAGGCTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLSSTWG*ADRLLA
Trigger: AGCCAGGAGCCTGTCTGCTCAGCCCCATGTGGAGGA...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTGGGGTCCGATGTGGTaGAATTCCCATTTTGGATGT +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQWGPMW*NSHFGC
Trigger: ACATCCAAAATGGGAATTTCACCACATCGGACCCCA...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATGGTCCTCAAGTGTGGGGTCCGATGTGGTaGAATTCCCATTTTGGATGT +
Preference number: 4 (lower is better)
Translates to: CSHAWLLSTPWSRHGPQVWGPMW*NSHFGC
Trigger: ACATCCAAAATGGGAATTTCACCACATCGGACCCCA...CACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACGGCCGGGGTCGCAGGTaGACTCCACAATGGTGCCGA +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDGRGRR*TPQWCR
Trigger: TCGGCACCATTGTGGAGTTCACCTGCGACCCCGGCC...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTAGTGGAACTGGATGGTaGGGTCCGGTGTGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSSGTGW*GPVWRS
Trigger: ACTCCTCCACACCGGACCTCACCATCCAGTTCCACT...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCGTTCCCACCTTCCAGTaGGGACTCTGCTGCCGCTTC +
Preference number: 4 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVVPTFQ*GLCCRF
Trigger: GAAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAAC...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAGCCAGGGGCCTCAGCTaGCTCCGGGCCGAGTTGAGT +
Preference number: 4 (lower is better)
Translates to: CKFSKELASKAQAVITWKARGLS*LRAELS
Trigger: ACTCAACTCGGCCCGGAGGCAGCTGAGGCCCCTGGC...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGCCGTCACATTGTAAGTaGATTCCAGGAAGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQPSHCK*IPGSCC
Trigger: ACAGCAGCTTCCTGGAATGCACTTACAATGTGACGG...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACACCGTCACATTGTAAGTaGATTCCAGGAAGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTPSHCK*IPGSCC
Trigger: ACAGCAGCTTCCTGGAATGCACTTACAATGTGACGG...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCTGGTGTTGGTGGGGCTaGGGATCACCTGGCCCTCTA +
Preference number: 4 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVWCWWG*GSPGPL
Trigger: TAGAGGGCCAGGTGATCCGCAGCCCCACCAACACCA...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCACAGTCTTCACCTTCTaGATAGGGCTCTGGCCAGTT +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFTVFTF*IGLWPV
Trigger: AACTGGCCAGAGCCCTATGCAGAAGGTGAAGACTGT...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTGCCAAAGATGAGGCCTaGAGGGTCGGAGTGGAACTG +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSAKDEA*RVGVEL
Trigger: CAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGC...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTGTACTGGATGGTGGTaGCCACTAGCAGCACAGGGT +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMCTGWW*PLAAQG
Trigger: ACCCTGTGCTGCTAGTGGGCACCACCATCCAGTACA...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACACTCTGCTGCCGCTTCTaGTTCCAATGCATGTTCAAA +
Preference number: 4 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTLCCRF*FQCMFK
Trigger: TTTGAACATGCATTGGAAGCAGAAGCGGCAGCAGAG...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079491.14
ENSMUST00000200575.5
CDS-3UTR CCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATCACGCAGCTTCGTGGTaGCAGAGGCAGGAGACCCCA +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNHAASW*QRQETP
Trigger: TGGGGTCTCCTGCCTCTGCCACCACGAAGCTGCGTG...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTAGCTCACGCAGCTTCGTaGTGGCAGAGGCAGGAGACC +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLAHAAS*WQRQET
Trigger: GGTCTCCTGCCTCTGCCACCACGAAGCTGCGTGAGC...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACGGGCTGAGGGCTGTGTaGGAGTGTGGTCGCCAGTGC +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDGLRAV*ECGRQC
Trigger: GCACTGGCGACCACACTCCCACACAGCCCTCAGCCC...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGCCAGTAGAGTCTGGTTaGCCAGGACTGTCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMPVESG*PGLSEW
Trigger: CCACTCTGACAGTCCTGGCCAACCAGACTCTACTGG...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGCAGGTCAGCGTCTTaGCTCCCTGCAGCTCGTAGC +
Preference number: 4 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLCRSAS*LPAARS
Trigger: GCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCA...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTACGGTTCCCGGGAAACTaGGGGAGAGAACTCGGCCGA +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLRFPGN*GRELGR
Trigger: TCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCG...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATCGGTTCCCGGGAAACTaGGGGAGAGAACTCGGCCGA +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNRFPGN*GRELGR
Trigger: TCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCG...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATAAGGCGGAAGCTGCCTaGCCCTGGTCCGACGTGAAC +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNKAEAA*PWSDVN
Trigger: GTTCACGTCGGACCAGGGCCAGGCAGCTTCCGCCTT...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTACCCTGTTCCAGAGAGTaGCCGGGGTCGCAGGTGAAC +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLPCSRE*PGSQVN
Trigger: GTTCACCTGCGACCCCGGCCACTCTCTGGAACAGGG...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGTTCTGCATAGGGCTCTaGCCAGTTTGGAGACAGCAC +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQFCIGL*PVWRQH
Trigger: GTGCTGTCTCCAAACTGGCCAGAGCCCTATGCAGAA...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGCTGACCAGCTCTGTGTaGGAAGTAGTTTTCCAGCCG +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQLTSSV*EVVFQP
Trigger: CGGCTGGAAAACTACTTCCCACACAGAGCTGGTCAG...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGCAACTGAGGTCCCATTaGCAGGTGAGGGTGTCACTC +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMQLRSH*QVRVSL
Trigger: GAGTGACACCCTCACCTGCCAATGGGACCTCAGTTG...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTTCCTCAGAGACACAGTaGGGCAGGCGAGATGTCCAG +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSSSETQ*GRRDVQ
Trigger: CTGGACATCTCGCCTGCCCCACTGTGTCTCTGAGGA...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTCCACCATCTTCCGCCTaGGCTGCCGCGGGGCTCCCC +
Preference number: 4 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFPPSSA*AAAGLP
Trigger: GGGGAGCCCCGCGGCAGCTCAGGCGGAAGATGGTGG...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGGCGGTTTGGAGGCATTaGTGCAGGTCAGCGTCTTGG +
Preference number: 4 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLAVWRH*CRSASW
Trigger: CCAAGACGCTGACCTGCATCAATGCCTCCAAACCGC...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACTCCTCCACATGGGGCTaGGCAGACAGGCTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDSSTWG*ADRLLA
Trigger: AGCCAGGAGCCTGTCTGCTCAGCCCCATGTGGAGGA...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGGTCACTTCGCCCATaGGCTCAAAGCCCTCGTAGC +
Preference number: 4 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLWSLRP*AQSPRS
Trigger: GCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCA...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGTTCCATTGCTTCCAGTaGTTCTTGGGATGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQFHCFQ*FLGWQE
Trigger: CTCCTGCCATCCCAAGAAGCACTGGAAGCAATGGAA...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCGGGCCGAGTTGAGTTaGTTCAGGGACGGCAGACCC +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDRAELS*FRDGRP
Trigger: GGGTCTGCCGTCCCTGAAGCAACTCAACTCGGCCCG...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATGCGGGCTACCGGGGCTaGTGTCATCAGGGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNAGYRG*CHQGPE
Trigger: CTCAGGCCCCTGATGACAGCAGCCCCGGTAGCCCGC...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATTGGTGTTGGTGGGGCTaGGGATCACCTGGCCCTCTA +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNWCWWG*GSPGPL
Trigger: TAGAGGGCCAGGTGATCCGCAGCCCCACCAACACCA...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTGCCACCCCGCCCGAGTaGAGATCCATCACCGTGACC +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGATPPE*RSITVT
Trigger: GGTCACGGTGATGGATCTGCACTCGGGCGGGGTGGC...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATCCTGTCTTTCTCATaGAGCAGCAGCCTTTCAAGG +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFILSFS*SSSLSR
Trigger: CCTTGAAAGGCTGCTGCTGCATGAGAAAGACAGGAT...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCACGCAGCTTCGTGGTaGCAGAGGCAGGAGACCCCA +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDHAASW*QRQETP
Trigger: TGGGGTCTCCTGCCTCTGCCACCACGAAGCTGCGTG...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACGCTCACGCAGCTTCGTaGTGGCAGAGGCAGGAGACC +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDAHAAS*WQRQET
Trigger: GGTCTCCTGCCTCTGCCACCACGAAGCTGCGTGAGC...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTCCAGTAGAGTCTGGTTaGCCAGGACTGTCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSPVESG*PGLSEW
Trigger: CCACTCTGACAGTCCTGGCCAACCAGACTCTACTGG...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTACAGAGATGGTGTTGGTaGGGCTGCGGATCACCTGGC +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLQRWCW*GCGSPG
Trigger: GCCAGGTGATCCGCAGCCCCACCAACACCATCTCTG...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATGAGCAGACAGGCTCCTaGCTGCTCCAGTGCGGTTTG +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNEQTGS*LLQCGL
Trigger: CAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTC...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTTCTGCATAGGGCTCTaGCCAGTTTGGAGACAGCAC +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMFCIGL*PVWRQH
Trigger: GTGCTGTCTCCAAACTGGCCAGAGCCCTATGCAGAA...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTACTGTGGCCAAAGTACTaGCCCAGGACGTGGGGCACA +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLLWPKY*PRTWGT
Trigger: TGTGCCCCACGTCCTGGGCCAGTACTTTGGCCACAG...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTACCTGCAGGGTCGGAGTaGAACTGGATGGTGAGGTCC +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLPAGSE*NWMVRS
Trigger: GGACCTCACCATCCAGTTCCACTCCGACCCTGCAGG...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CTTGGGAACGGAGGCCGTCGTGCGACCTTGGCTGCAGCCTCAATGTACCGAACTTTCATGATAAATCCCTaGCCCTTGCCAAAGATGAGG +
Preference number: 4 (lower is better)
Translates to: LGNGGRRATLAAASMYRTFMINP*PLPKMR
Trigger: CCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAA...AGTTCGGTACATTGAGGCTGCAGCCAAGGTCGCACGACGGCCTCCGTTCCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATGGCGAGATGTCCAGATaGGAGTTCCTGTCTCGCGGC +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNGEMSR*EFLSRG
Trigger: GCCGCGAGACAGGAACTCCCATCTGGACATCTCGCC...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
3UTR CAA 72 bp AGCACCTCCCCTGCCAGGGAGTTTGTGAGAACAAGATaGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGC +
Preference number: 4 (lower is better)
Translates to: STSPAREFVRTR*GGSVSHGYVKG
Trigger: GCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGCAGGGGAGGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 72 bp CGCAGGGGCCTTTCCTGGAGGAAGATGAGTCTATCCTaGCTAGGACGAGGGCTGAGAAGATGTAATCTCCCT +
Preference number: 4 (lower is better)
Translates to: RRGLSWRKMSLS*LGRGLRRCNLP
Trigger: AGGGAGATTACATCTTCTCAGCCCTCGTCCTAGCAAGGATAGACTCATCTTCCTCCAGGAAAGGCCCCTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATAGGGGTGGGAGTACATaGGGGGTAGGCGGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNRGGST*GVGGGW
Trigger: CCAGCCTCCGCCTACCCCTCATGTACTCCCACCCCT...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGCCGTCACATTGTAAGTaGATTCCAGGAAGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQPSHCK*IPGSCC
Trigger: ACAGCAGCTTCCTGGAATGCACTTACAATGTGACGG...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATGCCACCCCGCCCGAGTaGAGATCCATCACCGTGACC +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNATPPE*RSITVT
Trigger: GGTCACGGTGATGGATCTGCACTCGGGCGGGGTGGC...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTACCGATGGTGGCATTGTaGACTGCTCCTCCACATGGG +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLPMVAL*TAPPHG
Trigger: CCCATGTGGAGGAGCAGTGCACAATGCCACCATCGG...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGATCCTGTCTTTCTCATaGAGCAGCAGCCTTTCAAGG +
Preference number: 4 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQILSFS*SSSLSR
Trigger: CCTTGAAAGGCTGCTGCTGCATGAGAAAGACAGGAT...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATGCCAAAGATGAGGCCTaGAGGGTCGGAGTGGAACTG +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNAKDEA*RVGVEL
Trigger: CAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGC...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCTGTACTGGATGGTGGTaGCCACTAGCAGCACAGGGT +
Preference number: 4 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVCTGWW*PLAAQG
Trigger: ACCCTGTGCTGCTAGTGGGCACCACCATCCAGTACA...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGCTCTGCTGCCGCTTCTaGTACTTCCAATGCATGTTC +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMLCCRF*YFQCMF
Trigger: GAACATGCATTGGAAGTAGCAGAAGCGGCAGCAGAG...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAGCTCACGCAGCTTCGTaGTGGCAGAGGCAGGAGACC +
Preference number: 4 (lower is better)
Translates to: CKFSKELASKAQAVITWKAHAAS*WQRQET
Trigger: GGTCTCCTGCCTCTGCCACCACGAAGCTGCGTGAGC...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTCGATGGTGGACGTGGTaGTCTCCTGGCTCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGRWWTW*SPGSPR
Trigger: CCGAGGAGAGCCAGGAGACCACCACGTCCACCATCG...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTCCCTGTTCCAGAGAGTaGCCGGGGTCGCAGGTGAAC +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGPCSRE*PGSQVN
Trigger: GTTCACCTGCGACCCCGGCCACTCTCTGGAACAGGG...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCCACAATGTCATAGCCTaGGTCACACTGGTATGTGAT +
Preference number: 4 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFHNVIA*VTLVCD
Trigger: ATCACATACCAGTGTGACCCAGGCTATGACATTGTG...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACGGCGAGATGTCCAGATaGGAGTTCCTGTCTCGCGGC +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDGEMSR*EFLSRG
Trigger: GCCGCGAGACAGGAACTCCCATCTGGACATCTCGCC...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTTGGTTAAAGACACAGTaGGGCAGGCGAGATGTCCAG +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSWLKTQ*GRRDVQ
Trigger: CTGGACATCTCGCCTGCCCCACTGTGTCTTTAACCA...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197425.2
3UTR CAA 72 bp TCGTTCCTTGGGCCCCAGGGAATTCTGGGAAAATCTTaGCTGCTTTCGGAAGGCCACAGGAAGGAGAAGATG +
Preference number: 4 (lower is better)
Translates to: SFLGPQGILGKS*LLSEGHRKEKM
Trigger: CATCTTCTCCTTCCTGTGGCCTTCCGAAAGCAGCAAAGATTTTCCCAGAATTCCCTGGGGCCCAAGGAACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATGGCCCTTGCCAAAGATaGGGCCTGCAGGGTCGGAGT +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNGPCQR*GLQGRS
Trigger: ACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCC...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAGGTCCCATTGGCAGGTaGGGGTGTCACTCCCCACAA +
Preference number: 4 (lower is better)
Translates to: CKFSKELASKAQAVITWKGPIGR*GCHSPQ
Trigger: TTGTGGGGAGTGACACCCTCACCTGCCAATGGGACC...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTGGTCCCATTGGCAGGTaGGGGTGTCACTCCCCACAA +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGGPIGR*GCHSPQ
Trigger: TTGTGGGGAGTGACACCCTCACCTGCCAATGGGACC...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGGCACAGGGTCTGAAATaGGGCGGGTGGAGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVAQGLK*GGWSAP
Trigger: TGGAGCACTCCACCCGCCTCATTTCAGACCCTGTGC...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTCACCACACATGGCTCTaGATAGAGGCTCTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSHHTWL*IEALCH
Trigger: ATGACACAGAGCCTCTATGCAGAGCCATGTGTGGTG...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTATGTACTGGATGGTGGTaGCCACTAGCAGCACAGGGT +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLCTGWW*PLAAQG
Trigger: ACCCTGTGCTGCTAGTGGGCACCACCATCCAGTACA...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACACGGCTGTCCCAGAATaGACCGGATGGTCACTTCGC +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDTAVPE*TGWSLR
Trigger: GCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGT...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTCAGAGATGGTGTTGGTaGGGCTGCGGATCACCTGGC +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGQRWCW*GCGSPG
Trigger: GCCAGGTGATCCGCAGCCCCACCAACACCATCTCTG...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAACAGAGATGGTGTTGGTaGGGCTGCGGATCACCTGGC +
Preference number: 4 (lower is better)
Translates to: CKFSKELASKAQAVITWKQRWCW*GCGSPG
Trigger: GCCAGGTGATCCGCAGCCCCACCAACACCATCTCTG...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAGAGCAGACAGGCTCCTaGCTGCTCCAGTGCGGTTTG +
Preference number: 4 (lower is better)
Translates to: CKFSKELASKAQAVITWKEQTGS*LLQCGL
Trigger: CAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTC...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTCTGTGGCCAAAGTACTaGCCCAGGACGTGGGGCACA +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGLWPKY*PRTWGT
Trigger: TGTGCCCCACGTCCTGGGCCAGTACTTTGGCCACAG...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGCCTGCAGGGTCGGAGTaGAACTGGATGGTGAGGTCC +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVPAGSE*NWMVRS
Trigger: GGACCTCACCATCCAGTTCCACTCCGACCCTGCAGG...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAAGTGGAACTGGATGGTaGGGTCCGGTGTGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: CKFSKELASKAQAVITWKSGTGW*GPVWRS
Trigger: ACTCCTCCACACCGGACCTCACCATCCAGTTCCACT...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATGGTCCCATTGGCAGGTaGGGGTGTCACTCCCCACAA +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNGPIGR*GCHSPQ
Trigger: TTGTGGGGAGTGACACCCTCACCTGCCAATGGGACC...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGTGGTCACTTCGCCCATaGGCTCAAAGCCCTCGTAGC +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVWSLRP*AQSPRS
Trigger: GCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCA...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTTGGTCACTTCGCCCATaGGCTCAAAGCCCTCGTAGC +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGWSLRP*AQSPRS
Trigger: GCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCA...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGCGGGCCGAGTTGAGTTaGTTCAGGGACGGCAGACCC +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGRAELS*FRDGRP
Trigger: GGGTCTGCCGTCCCTGAAGCAACTCAACTCGGCCCG...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTCCGTCACATTGTAAGTaGATTCCAGGAAGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSPSHCK*IPGSCC
Trigger: ACAGCAGCTTCCTGGAATGCACTTACAATGTGACGG...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGCCGATGGTGGCATTGTaGACTGCTCCTCCACATGGG +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVPMVAL*TAPPHG
Trigger: CCCATGTGGAGGAGCAGTGCACAATGCCACCATCGG...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCTGCTACTTCCAATaGATGTTCAAAACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: AATQRHRVSDECLRRSRQFCYFQ*MFKTVL
Trigger: CAAGACAGTTTTGAACATGCATTGGAAGTAGCAGAA...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGCACGCAGCTTCGTGGTaGCAGAGGCAGGAGACCCCA +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGHAASW*QRQETP
Trigger: TGGGGTCTCCTGCCTCTGCCACCACGAAGCTGCGTG...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATGAGCAGACAGGCTCCTaGCTGCTCCAGTGCGGTTTG +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNEQTGS*LLQCGL
Trigger: CAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTC...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAGAACTCGGCCGATGGTaGCATTGTGCACTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: CKFSKELASKAQAVITWKELGRW*HCALLL
Trigger: GAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTC...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGAAGGCGGAAGCTGCCTaGCCCTGGTCCGACGTGAAC +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGKAEAA*PWSDVN
Trigger: GTTCACGTCGGACCAGGGCCAGGCAGCTTCCGCCTT...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTATTCTGCATAGGGCTCTaGCCAGTTTGGAGACAGCAC +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLFCIGL*PVWRQH
Trigger: GTGCTGTCTCCAAACTGGCCAGAGCCCTATGCAGAA...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTACTGACCAGCTCTGTGTaGGAAGTAGTTTTCCAGCCG +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLLTSSV*EVVFQP
Trigger: CGGCTGGAAAACTACTTCCCACACAGAGCTGGTCAG...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTTCCTCAGAGACACAGTaGGGCAGGCGAGATGTCCAG +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGSSETQ*GRRDVQ
Trigger: CTGGACATCTCGCCTGCCCCACTGTGTCTCTGAGGA...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
3UTR CAA 72 bp TCCACAGGAGATCTGTGTCTCCTCCCTGACAGTGTTTaGGGCTTATCACCTGTTAAGAAAGGGTCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: STGDLCLLPDSV*GLSPVKKGSAC
Trigger: GCAGGCAGACCCTTTCTTAACAGGTGATAAGCCCAAAACACTGTCAGGGAGGAGACACAGATCTCCTGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 72 bp GCTGAAGGCTGGGAGGGTCTGCTGTTGGGAAATATTTaGTTTTTACTGACGTTCGGGCTGGACCTTGTGCCT +
Preference number: 4 (lower is better)
Translates to: AEGWEGLLLGNI*FLLTFGLDLVP
Trigger: AGGCACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCAGCCTTCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGGGTCCCATTGGCAGGTaGGGGTGTCACTCCCCACAA +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGGPIGR*GCHSPQ
Trigger: TTGTGGGGAGTGACACCCTCACCTGCCAATGGGACC...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
50% GC, longest homopolymer 7 nt, total homopolymer stretches 23 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGGCACAGGGTCTGAAATaGGGCGGGTGGAGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGAQGLK*GGWSAP
Trigger: TGGAGCACTCCACCCGCCTCATTTCAGACCCTGTGC...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATTGGTCACTTCGCCCATaGGCTCAAAGCCCTCGTAGC +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNWSLRP*AQSPRS
Trigger: GCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCA...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGTCCTGGCTGCTCCAGTaGGGTTTGGAGGCATTGATG +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVSWLLQ*GLEALM
Trigger: CATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGA...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTTCCTGGCTGCTCCAGTaGGGTTTGGAGGCATTGATG +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGSWLLQ*GLEALM
Trigger: CATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGA...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATACGGCTGTCCCAGAATaGACCGGATGGTCACTTCGC +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNTAVPE*TGWSLR
Trigger: GCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGT...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTGACGTGGTGGTCTCCTaGCTCTCCTCGGAGGCAGAC +
Preference number: 4 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFDVVVS*LSSEAD
Trigger: GTCTGCCTCCGAGGAGAGCCAGGAGACCACCACGTC...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTCGATGGTGGACGTGGTaGTCTCCTGGCTCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFRWWTW*SPGSPR
Trigger: CCGAGGAGAGCCAGGAGACCACCACGTCCACCATCG...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTCACACCGCAGAGAGCTaGGGCCTGCTCCGTGGTGAT +
Preference number: 4 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFHTAES*GLLRGD
Trigger: ATCACCACGGAGCAGGCCCCAGCTCTCTGCGGTGTG...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATTCTACCAGTAGAGTCTaGTTGGCCAGGACTGTCAGA +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNSTSRV*LARTVR
Trigger: TCTGACAGTCCTGGCCAACCAGACTCTACTGGTAGA...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTAGAGAACTCGGCCGATaGTGGCATTGTGCACTGCTC +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGRELGR*WHCALL
Trigger: GAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCT...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGAGAGAACTCGGCCGATaGTGGCATTGTGCACTGCTC +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVRELGR*WHCALL
Trigger: GAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCT...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTTGTGTCATTCCAGTATaGGTCACGCACATTGACACA +
Preference number: 4 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSCVIPV*VTHIDT
Trigger: TGTGTCAATGTGCGTGACCCATACTGGAATGACACA...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAACAACTGAGGTCCCATTaGCAGGTGAGGGTGTCACTC +
Preference number: 4 (lower is better)
Translates to: CKFSKELASKAQAVITWKQLRSH*QVRVSL
Trigger: GAGTGACACCCTCACCTGCCAATGGGACCTCAGTTG...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGCAACTGAGGTCCCATTaGCAGGTGAGGGTGTCACTC +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVQLRSH*QVRVSL
Trigger: GAGTGACACCCTCACCTGCCAATGGGACCTCAGTTG...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTGTTCAAAACTGTCTTaGTTAAAGACACAGTGGGGC +
Preference number: 4 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMCSKLS*LKTQWG
Trigger: GCCCCACTGTGTCTTTAACCAAGACAGTTTTGAACA...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197425.2
3UTR CAA 72 bp AAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTaGGGCCCCAGGGAATTCTGGGAAAATCTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: KKGSACSSYSRS*GPREFWENLCC
Trigger: GCAGCAAAGATTTTCCCAGAATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 72 bp GTTCCAGTACAGAGCTCATCCAGTATCTATCCCTCTTaGAAGTCCCCTTCCACAGGAGATCTGTGTCTCCTC +
Preference number: 4 (lower is better)
Translates to: VPVQSSSSIYPS*KSPSTGDLCLL
Trigger: GAGGAGACACAGATCTCCTGTGGAAGGGGACTTCAAAGAGGGATAGATACTGGATGAGCTCTGTACTGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGCGCGGCTGTAGCAGGTaGGAAGAGAGCTCCCTTCAA +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGRGCSR*EESSLQ
Trigger: TTGAAGGGAGCTCTCTTCTCACCTGCTACAGCCGCG...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATCAAGGACTCTTCCATTaGTTCCAGTGCTTCTTGGGA +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNQGLFH*FQCFLG
Trigger: TCCCAAGAAGCACTGGAAGCAATGGAAGAGTCCTTG...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGGCCAGGGGCCTCAGCTaGCTCCGGGCCGAGTTGAGT +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVARGLS*LRAELS
Trigger: ACTCAACTCGGCCCGGAGGCAGCTGAGGCCCCTGGC...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATATCCTGTCTTTCTCATaGAGCAGCAGCCTTTCAAGG +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNILSFS*SSSLSR
Trigger: CCTTGAAAGGCTGCTGCTGCATGAGAAAGACAGGAT...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCACCACACATGGCTCTaGATAGAGGCTCTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDHHTWL*IEALCH
Trigger: ATGACACAGAGCCTCTATGCAGAGCCATGTGTGGTG...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGGAACTCGGCCGATGGTaGCATTGTGCACTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGELGRW*HCALLL
Trigger: GAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTC...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGTGTCATTCCAGTATaGGTCACGCACATTGACACA +
Preference number: 4 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLCVIPV*VTHIDT
Trigger: TGTGTCAATGTGCGTGACCCATACTGGAATGACACA...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAACGCTTGTACAGGATCTaGTACCCGTTCTCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: CKFSKELASKAQAVITWKRLYRI*YPFSGS
Trigger: ACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCG...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTAGGGGCCCACTCCAATaGGACGGCTGTCCCAGAATG +
Preference number: 4 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFRGPLQ*DGCPRM
Trigger: CATTCTGGGACAGCCGTCCCATTGGAGTGGGCCCCT...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGGCCTCCGGGCCGAGTTaGGTTGCTTCAGGGACGGCA +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVASGPS*VASGTA
Trigger: TGCCGTCCCTGAAGCAACTCAACTCGGCCCGGAGGC...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTGCGGTTTGGAGGCATTaGTGCAGGTCAGCGTCTTGG +
Preference number: 4 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFAVWRH*CRSASW
Trigger: CCAAGACGCTGACCTGCATCAATGCCTCCAAACCGC...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGAGGGGTGGGAGTACATaGGGGGTAGGCGGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVRGGST*GVGGGW
Trigger: CCAGCCTCCGCCTACCCCTCATGTACTCCCACCCCT...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGTTCCATTGCTTCCAGTaGTTCTTGGGATGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVFHCFQ*FLGWQE
Trigger: CTCCTGCCATCCCAAGAAGCACTGGAAGCAATGGAA...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGCACCACACATGGCTCTaGATAGAGGCTCTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVHHTWL*IEALCH
Trigger: ATGACACAGAGCCTCTATGCAGAGCCATGTGTGGTG...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTACAGTCTTCACCTTCTaGATAGGGCTCTGGCCAGTT +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGTVFTF*IGLWPV
Trigger: AACTGGCCAGAGCCCTATGCAGAAGGTGAAGACTGT...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTGCCAAAGATGAGGCCTaGAGGGTCGGAGTGGAACTG +
Preference number: 4 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFAKDEA*RVGVEL
Trigger: CAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGC...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGGGGCTGAGGGCTGTGTaGGAGTGTGGTCGCCAGTGC +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVGLRAV*ECGRQC
Trigger: GCACTGGCGACCACACTCCCACACAGCCCTCAGCCC...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTTCTACCAGTAGAGTCTaGTTGGCCAGGACTGTCAGA +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGSTSRV*LARTVR
Trigger: TCTGACAGTCCTGGCCAACCAGACTCTACTGGTAGA...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGAGAGAACTCGGCCGATaGTGGCATTGTGCACTGCTC +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGRELGR*WHCALL
Trigger: GAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCT...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTATGTGTCATTCCAGTATaGGTCACGCACATTGACACA +
Preference number: 4 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLCVIPV*VTHIDT
Trigger: TGTGTCAATGTGCGTGACCCATACTGGAATGACACA...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATCACAATGTCATAGCCTaGGTCACACTGGTATGTGAT +
Preference number: 4 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNHNVIA*VTLVCD
Trigger: ATCACATACCAGTGTGACCCAGGCTATGACATTGTG...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGCAACTGAGGTCCCATTaGCAGGTGAGGGTGTCACTC +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGQLRSH*QVRVSL
Trigger: GAGTGACACCCTCACCTGCCAATGGGACCTCAGTTG...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTTGGGGTCCGATGTGGTaGAATTCCCATTTTGGATGT +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGWGPMW*NSHFGC
Trigger: ACATCCAAAATGGGAATTTCACCACATCGGACCCCA...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGATCCTGTCTTTCTCATaGAGCAGCAGCCTTTCAAGG +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVILSFS*SSSLSR
Trigger: CCTTGAAAGGCTGCTGCTGCATGAGAAAGACAGGAT...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATCACCACACATGGCTCTaGATAGAGGCTCTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNHHTWL*IEALCH
Trigger: ATGACACAGAGCCTCTATGCAGAGCCATGTGTGGTG...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGGCTCACGCAGCTTCGTaGTGGCAGAGGCAGGAGACC +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVAHAAS*WQRQET
Trigger: GGTCTCCTGCCTCTGCCACCACGAAGCTGCGTGAGC...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGCGATGGTGGACGTGGTaGTCTCCTGGCTCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVRWWTW*SPGSPR
Trigger: CCGAGGAGAGCCAGGAGACCACCACGTCCACCATCG...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGCCCTGTTCCAGAGAGTaGCCGGGGTCGCAGGTGAAC +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVPCSRE*PGSQVN
Trigger: GTTCACCTGCGACCCCGGCCACTCTCTGGAACAGGG...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACTTCATGATAAATCCCTaGCCCTTGCCAAAGATGAGG +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDFMINP*PLPKMR
Trigger: CCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAA...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGCTGACCAGCTCTGTGTaGGAAGTAGTTTTCCAGCCG +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGLTSSV*EVVFQP
Trigger: CGGCTGGAAAACTACTTCCCACACAGAGCTGGTCAG...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATCCGTCACATTGTAAGTaGATTCCAGGAAGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNPSHCK*IPGSCC
Trigger: ACAGCAGCTTCCTGGAATGCACTTACAATGTGACGG...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATATCCTGTCTTTCTCATaGAGCAGCAGCCTTTCAAGG +
Preference number: 4 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNILSFS*SSSLSR
Trigger: CCTTGAAAGGCTGCTGCTGCATGAGAAAGACAGGAT...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCGCTTCTGCTTCCAATaGATGTTCAAAACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDRFCFQ*MFKTVL
Trigger: CAAGACAGTTTTGAACATGCATTGGAAGCAGAAGCG...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000079491.14
ENSMUST00000200575.5
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGTGCAGGTCAGCGTCTTaGCTCCCTGCAGCTCGTAGC +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVCRSAS*LPAARS
Trigger: GCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCA...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTTTCATGATAAATCCCTaGCCCTTGCCAAAGATGAGG +
Preference number: 4 (lower is better)
Translates to: CGRAHECIPFEKYLILMGFMINP*PLPKMR
Trigger: CCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAA...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGCACAATGTCATAGCCTaGGTCACACTGGTATGTGAT +
Preference number: 4 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVHNVIA*VTLVCD
Trigger: ATCACATACCAGTGTGACCCAGGCTATGACATTGTG...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGGGCGAGATGTCCAGATaGGAGTTCCTGTCTCGCGGC +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVGEMSR*EFLSRG
Trigger: GCCGCGAGACAGGAACTCCCATCTGGACATCTCGCC...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGAGGGGCCCACTCCAATaGGACGGCTGTCCCAGAATG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVRGPLQ*DGCPRM
Trigger: CATTCTGGGACAGCCGTCCCATTGGAGTGGGCCCCT...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGGCGGTTTGGAGGCATTaGTGCAGGTCAGCGTCTTGG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVAVWRH*CRSASW
Trigger: CCAAGACGCTGACCTGCATCAATGCCTCCAAACCGC...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGCGCGGCTGTAGCAGGTaGGAAGAGAGCTCCCTTCAA +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVRGCSR*EESSLQ
Trigger: TTGAAGGGAGCTCTCTTCTCACCTGCTACAGCCGCG...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGCCGATGGTGGCATTGTaGACTGCTCCTCCACATGGG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVPMVAL*TAPPHG
Trigger: CCCATGTGGAGGAGCAGTGCACAATGCCACCATCGG...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTCACCACACATGGCTCTaGATAGAGGCTCTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFHHTWL*IEALCH
Trigger: ATGACACAGAGCCTCTATGCAGAGCCATGTGTGGTG...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAATGCCGCTTCTTCCAATaGATGTTCAAAACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: CKFSKELASKAQAVITWKCRFFQ*MFKTVL
Trigger: CAAGACAGTTTTGAACATGCATTGGAAGAAGCGGCA...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075387.11
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGGAACTCGGCCGATGGTaGCATTGTGCACTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVELGRW*HCALLL
Trigger: GAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTC...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
3UTR CAA 72 bp CCTATAGTCCTGCAGCCAGAAAGTGCTTTCTGTTCTTaGAAACCCAGGGATTTAACACAACAACCCCAGATA +
Preference number: 4 (lower is better)
Translates to: PIVLQPESAFCS*KPRDLTQQPQI
Trigger: TATCTGGGGTTGTTGTGTTAAATCCCTGGGTTTCAAAGAACAGAAAGCACTTTCTGGCTGCAGGACTATAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGTCCTGGCTGCTCCAGTaGGGTTTGGAGGCATTGATG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVSWLLQ*GLEALM
Trigger: CATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGA...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGCCAGTAGAGTCTGGTTaGCCAGGACTGTCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVPVESG*PGLSEW
Trigger: CCACTCTGACAGTCCTGGCCAACCAGACTCTACTGG...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGTGTGTCATTCCAGTATaGGTCACGCACATTGACACA +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGCVIPV*VTHIDT
Trigger: TGTGTCAATGTGCGTGACCCATACTGGAATGACACA...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGTTCATGATAAATCCCTaGCCCTTGCCAAAGATGAGG +
Preference number: 4 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGFMINP*PLPKMR
Trigger: CCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAA...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGCTGACCAGCTCTGTGTaGGAAGTAGTTTTCCAGCCG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVLTSSV*EVVFQP
Trigger: CGGCTGGAAAACTACTTCCCACACAGAGCTGGTCAG...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGTTCCATTGCTTCCAGTaGTTCTTGGGATGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVFHCFQ*FLGWQE
Trigger: CTCCTGCCATCCCAAGAAGCACTGGAAGCAATGGAA...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGACAGTCTTCACCTTCTaGATAGGGCTCTGGCCAGTT +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVTVFTF*IGLWPV
Trigger: AACTGGCCAGAGCCCTATGCAGAAGGTGAAGACTGT...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGTCTACCAGTAGAGTCTaGTTGGCCAGGACTGTCAGA +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVSTSRV*LARTVR
Trigger: TCTGACAGTCCTGGCCAACCAGACTCTACTGGTAGA...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR TCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGTGGGGTCCGATGTGGTaGAATTCCCATTTTGGATGT +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVWGPMW*NSHFGC
Trigger: ACATCCAAAATGGGAATTTCACCACATCGGACCCCA...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGTGTGTCATTCCAGTATaGGTCACGCACATTGACACA +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVCVIPV*VTHIDT
Trigger: TGTGTCAATGTGCGTGACCCATACTGGAATGACACA...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGTTCATGATAAATCCCTaGCCCTTGCCAAAGATGAGG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVFMINP*PLPKMR
Trigger: CCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAA...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGCACAATGTCATAGCCTaGGTCACACTGGTATGTGAT +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVHNVIA*VTLVCD
Trigger: ATCACATACCAGTGTGACCCAGGCTATGACATTGTG...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR GCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGTGCCGCTTCTTCCAATaGATGTTCAAAACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVCRFFQ*MFKTVL
Trigger: CAAGACAGTTTTGAACATGCATTGGAAGAAGCGGCA...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075387.11
ENSMUST00000197425.2
CDS-3UTR GCA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGCGCTTCTGCTTCCAATaGATGTTCAAAACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: PVSKPSILNIVKYSEETVRFCFQ*MFKTVL
Trigger: CAAGACAGTTTTGAACATGCATTGGAAGCAGAAGCG...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079491.14
ENSMUST00000200575.5
CDS CCA 90 bp GTGTGGGAGTGTGGTCGCCAGTGCAGTGAAGGGCGCGATCTGCAGTaGCGCAGGCGCCGTGGGCTGCTCGGGGTCTTCAGGCTCACGCAG +
Preference number: 5 (lower is better)
Translates to: VWECGRQCSEGRDLQ*RRRRGLLGVFRLTQ
Trigger: CTGCGTGAGCCTGAAGACCCCGAGCAGCCCACGGCGCCTGCGCCACTGCAGATCGCGCCCTTCACTGCACTGGCGACCACACTCCCACAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp CAGGCGCCGTGGGCTGCTCGGGGTCTTCAGGCTCACGCAGCTTCGTaGTGGCAGAGGCAGGAGACCCCAGTCTCTGCAGAGTTGTCGGGG +
Preference number: 5 (lower is better)
Translates to: QAPWAARGLQAHAAS*WQRQETPVSAELSG
Trigger: CCCCGACAACTCTGCAGAGACTGGGGTCTCCTGCCTCTGCCACCACGAAGCTGCGTGAGCCTGAAGACCCCGAGCAGCCCACGGCGCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp ACCGGGGCTGCTGTCATCAGGGGCCTGAGCGGGCTGAGGGCTGTGTaGGAGTGTGGTCGCCAGTGCAGTGAAGGGCGCGATCTGCAGTGG +
Preference number: 5 (lower is better)
Translates to: TGAAVIRGLSGLRAV*ECGRQCSEGRDLQW
Trigger: CCACTGCAGATCGCGCCCTTCACTGCACTGGCGACCACACTCCCACACAGCCCTCAGCCCGCTCAGGCCCCTGATGACAGCAGCCCCGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp GACCCTCTGGAGCCTCTATGGTCCACACGCAGAGCTGGCTGCCATTaGCGGTTCCCGGGAAACTGGGGGAGAGAACTCGGCCGATGGTGG +
Preference number: 5 (lower is better)
Translates to: DPLEPLWSTRRAGCH*RFPGNWGRELGRWW
Trigger: CCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTCCAGAGGGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS TCA 90 bp GCAGTGGAAGGGTGCATCTCTCCCTCTGGACCACCATCTTCCGCCTaGGCTGCCGCGGGGCTCCCCAGAAGGAAGGCGACAAGGAACAGA +
Preference number: 5 (lower is better)
Translates to: AVEGCISPSGPPSSA*AAAGLPRRKATRNR
Trigger: TCTGTTCCTTGTCGCCTTCCTTCTGGGGAGCCCCGCGGCAGCTCAGGCGGAAGATGGTGGTCCAGAGGGAGAGATGCACCCTTCCACTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS GCA 90 bp GCTTCTGACCCTCTGGAGCCTCTATGGTCCACACGCAGAGCTGGCTaGCATTGGCGGTTCCCGGGAAACTGGGGGAGAGAACTCGGCCGA +
Preference number: 5 (lower is better)
Translates to: ASDPLEPLWSTRRAG*HWRFPGNWGRELGR
Trigger: TCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTCCAGAGGGTCAGAAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp CCTGGCCCTCTACCAGTAGAGTCTGGTTGGCCAGGACTGTCAGAGTaGGACCGTCCACTCCTCGGATGGAGAGCAGCTCCCCCTCGGAGA +
Preference number: 5 (lower is better)
Translates to: PGPLPVESGWPGLSE*DRPLLGWRAAPPRR
Trigger: TCTCCGAGGGGGAGCTGCTCTCCATCCGAGGAGTGGACGGTCCCACTCTGACAGTCCTGGCCAACCAGACTCTACTGGTAGAGGGCCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp TGGTCCACACGCAGAGCTGGCTGCCATTGGCGGTTCCCGGGAAACTaGGGGAGAGAACTCGGCCGATGGTGGCATTGTGCACTGCTCCTC +
Preference number: 5 (lower is better)
Translates to: WSTRRAGCHWRFPGN*GRELGRWWHCALLL
Trigger: GAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS TCA 90 bp CTGAGCAGACAGGCTCCTGGCTGCTCCAGTGCGGTTTGGAGGCATTaGTGCAGGTCAGCGTCTTGGCTCCCTGCAGCTCGTAGCCCAGGT +
Preference number: 5 (lower is better)
Translates to: LSRQAPGCSSAVWRH*CRSASWLPAARSPG
Trigger: ACCTGGGCTACGAGCTGCAGGGAGCCAAGACGCTGACCTGCATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp CTTCCAGGCTACTCTCCAGCGAGGCAGAGGGCAGGAGGTAGGCAGTaGAAGGGTGCATCTCTCCCTCTGGACCACCATCTTCCGCCTGAG +
Preference number: 5 (lower is better)
Translates to: LPGYSPARQRAGGRQ*KGASLPLDHHLPPE
Trigger: CTCAGGCGGAAGATGGTGGTCCAGAGGGAGAGATGCACCCTTCCACTGCCTACCTCCTGCCCTCTGCCTCGCTGGAGAGTAGCCTGGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp TGGTGGGGCTGCGGATCACCTGGCCCTCTACCAGTAGAGTCTGGTTaGCCAGGACTGTCAGAGTGGGACCGTCCACTCCTCGGATGGAGA +
Preference number: 5 (lower is better)
Translates to: WWGCGSPGPLPVESG*PGLSEWDRPLLGWR
Trigger: TCTCCATCCGAGGAGTGGACGGTCCCACTCTGACAGTCCTGGCCAACCAGACTCTACTGGTAGAGGGCCAGGTGATCCGCAGCCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp CATTGGCGGTTCCCGGGAAACTGGGGGAGAGAACTCGGCCGATGGTaGCATTGTGCACTGCTCCTCCACATGGGGCTGAGCAGACAGGCT +
Preference number: 5 (lower is better)
Translates to: HWRFPGNWGRELGRW*HCALLLHMGLSRQA
Trigger: AGCCTGTCTGCTCAGCCCCATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp TGCCATTGGCGGTTCCCGGGAAACTGGGGGAGAGAACTCGGCCGATaGTGGCATTGTGCACTGCTCCTCCACATGGGGCTGAGCAGACAG +
Preference number: 5 (lower is better)
Translates to: CHWRFPGNWGRELGR*WHCALLLHMGLSRQ
Trigger: CTGTCTGCTCAGCCCCATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS-3UTR CAA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGGCCGATGGTGGCATaGTGCACTGCTCCTCCACAT +
Preference number: 5 (lower is better)
Translates to: RWAATQRHRVSDECLRRSRPMVA*CTAPPH
Trigger: ATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCG...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TGCTCACATGCCTGGCTGCTGAGCACCCCCTGGTCACGACATGGTCCTCAAGTGTCAGGCAGTCCTGGGTaGTCACACGCCAGGGACTCC +
Preference number: 5 (lower is better)
Translates to: CSHAWLLSTPWSRHGPQVSGSPG*SHARDS
Trigger: GGAGTCCCTGGCGTGTGACAACCCAGGACTGCCTGA...CACTTGAGGACCATGTCGTGACCAGGGGGTGCTCAGCAGCCAGGCATGTGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS TCA 90 bp CATTGCTTCCAGTGCTTCTTGGGATGGCAGGAGACCTGGGGCTGCTaGTGTCACCCCCTCTTCCAGGCTACTCTCCAGCGAGGCAGAGGG +
Preference number: 5 (lower is better)
Translates to: HCFQCFLGWQETWGC*CHPLFQATLQRGRG
Trigger: CCCTCTGCCTCGCTGGAGAGTAGCCTGGAAGAGGGGGTGACATCAGCAGCCCCAGGTCTCCTGCCATCCCAAGAAGCACTGGAAGCAATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp AAGGTGAGGGACTCTCCGGGCAGGTACAGCCGCTTGTACAGGATCTaGTACCCGTTCTCAGGCAGTCCTGGGTTGTCACACGCCAGGGAC +
Preference number: 5 (lower is better)
Translates to: KVRDSPGRYSRLYRI*YPFSGSPGLSHARD
Trigger: GTCCCTGGCGTGTGACAACCCAGGACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCGGCTGTACCTGCCCGGAGAGTCCCTCACCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GCCGCACAAGACTGGGCCTGGAGTGCCATCTCACCAGGCCTCATCGAAGACACACGGCCGATGGTGGCATaGTGCACTGCTCCTCCACAT +
Preference number: 5 (lower is better)
Translates to: AAQDWAWSAISPGLIEDTRPMVA*CTAPPH
Trigger: ATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCG...TGTGTCTTCGATGAGGCCTGGTGAGATGGCACTCCAGGCCCAGTCTTGTGCGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS TCA 90 bp AGGTGTACTGGATGGTGGTGCCCACTAGCAGCACAGGGTCTGAAATaGGGCGGGTGGAGTGCTCCACCTCCCCGGGGTCAGTACAGTACA +
Preference number: 5 (lower is better)
Translates to: RCTGWWCPLAAQGLK*GGWSAPPPRGQYST
Trigger: TGTACTGTACTGACCCCGGGGAGGTGGAGCACTCCACCCGCCTCATTTCAGACCCTGTGCTGCTAGTGGGCACCACCATCCAGTACACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp AGGTCCCGAGGCCATCATCCTGGAAGGTCCGGAAGTAGACAGAGATaGTGTTGGTGGGGCTGCGGATCACCTGGCCCTCTACCAGTAGAG +
Preference number: 5 (lower is better)
Translates to: RSRGHHPGRSGSRQR*CWWGCGSPGPLPVE
Trigger: CTCTACTGGTAGAGGGCCAGGTGATCCGCAGCCCCACCAACACCATCTCTGTCTACTTCCGGACCTTCCAGGATGATGGCCTCGGGACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp GCCTTTCAAGGTGCAGGTGAAGCTTCTGACCCTCTGGAGCCTCTATaGTCCACACGCAGAGCTGGCTGCCATTGGCGGTTCCCGGGAAAC +
Preference number: 5 (lower is better)
Translates to: AFQGAGEASDPLEPL*STRRAGCHWRFPGN
Trigger: GTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTCCAGAGGGTCAGAAGCTTCACCTGCACCTTGAAAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp GTACAGCCGCTTGTACAGGATCTGGTACCCGTTCTCAGGCAGTCCTaGGTTGTCACACGCCAGGGACTCCTCAGAGACACAGTGGGGCAG +
Preference number: 5 (lower is better)
Translates to: VQPLVQDLVPVLRQS*VVTRQGLLRDTVGQ
Trigger: CTGCCCCACTGTGTCTCTGAGGAGTCCCTGGCGTGTGACAACCCAGGACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCGGCTGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGCCGGGCCGAGTTGAGTaGCTTCAGGGACGGCAGACC +
Preference number: 5 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMPGRVE*LQGRQT
Trigger: GGTCTGCCGTCCCTGAAGCAACTCAACTCGGCCCGG...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGAGGGCTCTGGCCAGTTaGGAGACAGCACCACCCCAG +
Preference number: 5 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQRALAS*ETAPPQ
Trigger: CTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCT...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGCCAACTGAGGTCCCATaGGCAGGTGAGGGTGTCACT +
Preference number: 5 (lower is better)
Translates to: AATQRHRVSDECLRRSRQPTEVP*AGEGVT
Trigger: AGTGACACCCTCACCTGCCAATGGGACCTCAGTTGG...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS CCA 90 bp CGAGGCCATCATCCTGGAAGGTCCGGAAGTAGACAGAGATGGTGTTaGTGGGGCTGCGGATCACCTGGCCCTCTACCAGTAGAGTCTGGT +
Preference number: 5 (lower is better)
Translates to: RGHHPGRSGSRQRWC*WGCGSPGPLPVESG
Trigger: ACCAGACTCTACTGGTAGAGGGCCAGGTGATCCGCAGCCCCACCAACACCATCTCTGTCTACTTCCGGACCTTCCAGGATGATGGCCTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp ATGCAGCAGCAGCCTTTCAAGGTGCAGGTGAAGCTTCTGACCCTCTaGAGCCTCTATGGTCCACACGCAGAGCTGGCTGCCATTGGCGGT +
Preference number: 5 (lower is better)
Translates to: MQQQPFKVQVKLLTL*SLYGPHAELAAIGG
Trigger: ACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTCCAGAGGGTCAGAAGCTTCACCTGCACCTTGAAAGGCTGCTGCTGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp TCAAAGGCCTCAAAGCGGATGTTGAAGGCGGAAGCTGCCTGGCCCTaGTCCGACGTGAACTCAATGCGGATACTGCTACCCTCGCTCAGC +
Preference number: 5 (lower is better)
Translates to: SKASKRMLKAEAAWP*SDVNSMRILLPSLS
Trigger: GCTGAGCGAGGGTAGCAGTATCCGCATTGAGTTCACGTCGGACCAGGGCCAGGCAGCTTCCGCCTTCAACATCCGCTTTGAGGCCTTTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp GTCCCATTGGCAGGTGAGGGTGTCACTCCCCACAATGTCATAGCCTaGGTCACACTGGTATGTGATCCGGGCTCCCCTGACCAGCTCTGT +
Preference number: 5 (lower is better)
Translates to: VPLAGEGVTPHNVIA*VTLVCDPGSPDQLC
Trigger: ACAGAGCTGGTCAGGGGAGCCCGGATCACATACCAGTGTGACCCAGGCTATGACATTGTGGGGAGTGACACCCTCACCTGCCAATGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS-3UTR CAA 90 bp GCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCTCCCCCTCGGAGAGGTaGACACTCTTGACCTGCAGT +
Preference number: 5 (lower is better)
Translates to: ATQRHRVSDECLRRSRQFSPSER*TLLTCS
Trigger: ACTGCAGGTCAAGAGTGTCAACCTCTCCGAGGGGGA...GAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCCCGGGCCGAGTTGAGTaGCTTCAGGGACGGCAGACC +
Preference number: 5 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVPGRVE*LQGRQT
Trigger: GGTCTGCCGTCCCTGAAGCAACTCAACTCGGCCCGG...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGCTGCTCCAGTGCGGTTaGGAGGCATTGATGCAGGTC +
Preference number: 5 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQLLQCG*EALMQV
Trigger: GACCTGCATCAATGCCTCCAAACCGCACTGGAGCAG...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTAGGGCTCTGGCCAGTTaGGAGACAGCACCACCCCAG +
Preference number: 5 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSRALAS*ETAPPQ
Trigger: CTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCT...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS GCA 90 bp GTGACCTTTCTCAAAGGCCTCAAAGCGGATGTTGAAGGCGGAAGCTaGCTGGCCCTGGTCCGACGTGAACTCAATGCGGATACTGCTACC +
Preference number: 5 (lower is better)
Translates to: VTFLKGLKADVEGGS*LALVRRELNADTAT
Trigger: GGTAGCAGTATCCGCATTGAGTTCACGTCGGACCAGGGCCAGGCAGCTTCCGCCTTCAACATCCGCTTTGAGGCCTTTGAGAAAGGTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp AACGTGGATCTTCCACACACAGTCTTCACCTTCTGCATAGGGCTCTaGCCAGTTTGGAGACAGCACCACCCCAGCCACAGCAGAGAGCTC +
Preference number: 5 (lower is better)
Translates to: NVDLPHTVFTFCIGL*PVWRQHHPSHSREL
Trigger: GAGCTCTCTGCTGTGGCTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCTATGCAGAAGGTGAAGACTGTGTGTGGAAGATCCACGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp AGAAGAGAGCTCCCTTCAAGCACAAAGCCAGGGCTACAGGTGTACTaGATGGTGGTGCCCACTAGCAGCACAGGGTCTGAAATGAGGCGG +
Preference number: 5 (lower is better)
Translates to: RRELPSSTKPGLQVY*MVVPTSSTGSEMRR
Trigger: CCGCCTCATTTCAGACCCTGTGCTGCTAGTGGGCACCACCATCCAGTACACCTGTAGCCCTGGCTTTGTGCTTGAAGGGAGCTCTCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS-3UTR CAA 90 bp ACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGGAGAGGTTGACACTCTaGACCTGCAGTTCCACCCCG +
Preference number: 5 (lower is better)
Translates to: TQRHRVSDECLRRSRQFMERLTL*TCSSTP
Trigger: CGGGGTGGAACTGCAGGTCAAGAGTGTCAACCTCTC...CATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTCGGCCGATGGTGGCATaGTGCACTGCTCCTCCACAT +
Preference number: 5 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSRPMVA*CTAPPH
Trigger: ATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCG...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAGGGCTCTGGCCAGTTaGGAGACAGCACCACCCCAG +
Preference number: 5 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVRALAS*ETAPPQ
Trigger: CTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCT...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGAGGGCTCTGGCCAGTTaGGAGACAGCACCACCCCAG +
Preference number: 5 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLRALAS*ETAPPQ
Trigger: CTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCT...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTGGCAGGTACAGCCGCTaGTACAGGATCTGGTACCCG +
Preference number: 5 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSGRYSR*YRIWYP
Trigger: CGGGTACCAGATCCTGTACAAGCGGCTGTACCTGCC...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS TCA 90 bp TGCTACCCTCGCTCAGCAGGCCTTCGAAGGGCACGCTCTCTGTTCTaGGAGAGTCGTACAGGAGGGCAGATGTGTTTGTTCTTCCACTGT +
Preference number: 5 (lower is better)
Translates to: CYPRSAGLRRARSLF*ESRTGGQMCLFFHC
Trigger: ACAGTGGAAGAACAAACACATCTGCCCTCCTGTACGACTCTCTCAGAACAGAGAGCGTGCCCTTCGAAGGCCTGCTGAGCGAGGGTAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 90 bp AAACTGTCTTGGTTAACTTTACAGATGGGCAGGGGCCCACTCCAATaGGACGGCTGTCCCAGAATGCACCGGATGGTCACTTCGCCCATG +
Preference number: 5 (lower is better)
Translates to: KLSWLTLQMGRGPLQ*DGCPRMHRMVTSPM
Trigger: CATGGGCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGTCCCATTGGAGTGGGCCCCTGCCCATCTGTAAAGTTAACCAAGACAGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTTGCTTCCAGTGCTTCTaGGGATGGCAGGAGACCTGG +
Preference number: 5 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSCFQCF*GWQETW
Trigger: CCAGGTCTCCTGCCATCCCAAGAAGCACTGGAAGCA...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGTTCATGTCTCTGCTCCAGTGCGGTTaGGAGGCATTGATGCAGGTC +
Preference number: 5 (lower is better)
Translates to: QRHRVSDECLRRSRQFMSLLQCG*EALMQV
Trigger: GACCTGCATCAATGCCTCCAAACCGCACTGGAGCAG...AGACATGAACTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATTCAGGCAGTCCTGGGTaGTCACACGCCAGGGACTCC +
Preference number: 5 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNSGSPG*SHARDS
Trigger: GGAGTCCCTGGCGTGTGACAACCCAGGACTGCCTGA...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGGGCAGGTACAGCCGCTaGTACAGGATCTGGTACCCG +
Preference number: 5 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLGRYSR*YRIWYP
Trigger: CGGGTACCAGATCCTGTACAAGCGGCTGTACCTGCC...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS TCA 90 bp GCTCCCCTGACCAGCTCTGTGTGGGAAGTAGTTTTCCAGCCGTTCTaGATTTCAGGCAAGTCTGAGCAGGAGTCGTTCCGTGACACCTCT +
Preference number: 5 (lower is better)
Translates to: APLTSSVWEVVFQPF*ISGKSEQESFRDTS
Trigger: AGAGGTGTCACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACTACTTCCCACACAGAGCTGGTCAGGGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS-3UTR CAA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCTGCTTCCAGTGCTTCTaGGGATGGCAGGAGACCTGG +
Preference number: 5 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVCFQCF*GWQETW
Trigger: CCAGGTCTCCTGCCATCCCAAGAAGCACTGGAAGCA...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTCCGGGCCGAGTTGAGTaGCTTCAGGGACGGCAGACC +
Preference number: 5 (lower is better)
Translates to: CGRAHECIPFEKYLILMGPGRVE*LQGRQT
Trigger: GGTCTGCCGTCCCTGAAGCAACTCAACTCGGCCCGG...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTAGGCAGGTACAGCCGCTaGTACAGGATCTGGTACCCG +
Preference number: 5 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLGRYSR*YRIWYP
Trigger: CGGGTACCAGATCCTGTACAAGCGGCTGTACCTGCC...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CGCTGGGCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCAAACTTCATACTCTCTaGTTTCCCCAGTCTCGTAGA +
Preference number: 5 (lower is better)
Translates to: RWAATQRHRVSDECLRRSKLHTL*FPQSRR
Trigger: TCTACGAGACTGGGGAAACAAGAGAGTATGAAGTTT...GGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGCCCAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS TCA 90 bp AAGGACCGGAATGAAGATGGCCAGCGCCATGTTCCCACCTTCCAGTaGGGACTCTGCTGCCGCTTCTTCCAATGCATGTTCAAAACTGTC +
Preference number: 5 (lower is better)
Translates to: KDRNEDGQRHVPTFQ*GLCCRFFQCMFKTV
Trigger: GACAGTTTTGAACATGCATTGGAAGAAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAACATGGCGCTGGCCATCTTCATTCCGGTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075387.11
ENSMUST00000197425.2
CDS TCA 90 bp AAGGACCGGAATGAAGATGGCCAGCGCCATGTTCCCACCTTCCAGTaGGGACTCTGCTGCCGCTTCTGCTTCCAATGCATGTTCAAAACT +
Preference number: 5 (lower is better)
Translates to: KDRNEDGQRHVPTFQ*GLCCRFCFQCMFKT
Trigger: AGTTTTGAACATGCATTGGAAGCAGAAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAACATGGCGCTGGCCATCTTCATTCCGGTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079491.14
ENSMUST00000200575.5
CDS TCA 90 bp AAGGACCGGAATGAAGATGGCCAGCGCCATGTTCCCACCTTCCAGTaGGGACTCTGCTGCCGCTTCTGCTACTTCCAATGCATGTTCAAA +
Preference number: 5 (lower is better)
Translates to: KDRNEDGQRHVPTFQ*GLCCRFCYFQCMFK
Trigger: TTTGAACATGCATTGGAAGTAGCAGAAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAACATGGCGCTGGCCATCTTCATTCCGGTCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212480.2
CDS GCA 90 bp TATATAGTTCATGATAAATCCCTGGCCCTTGCCAAAGATGAGGCCTaGAGGGTCGGAGTGGAACTGGATGGTGAGGTCCGGTGTGGAGGA +
Preference number: 5 (lower is better)
Translates to: YIVHDKSLALAKDEA*RVGVELDGEVRCGG
Trigger: TCCTCCACACCGGACCTCACCATCCAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCCAGGGATTTATCATGAACTATATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS-3UTR CAA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTATGCTTCCAGTGCTTCTaGGGATGGCAGGAGACCTGG +
Preference number: 5 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLCFQCF*GWQETW
Trigger: CCAGGTCTCCTGCCATCCCAAGAAGCACTGGAAGCA...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTAGAGAGGTTGACACTCTaGACCTGCAGTTCCACCCCG +
Preference number: 5 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLERLTL*TCSSTP
Trigger: CGGGGTGGAACTGCAGGTCAAGAGTGTCAACCTCTC...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTATCCCCCTCGGAGAGGTaGACACTCTTGACCTGCAGT +
Preference number: 5 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLSPSER*TLLTCS
Trigger: ACTGCAGGTCAAGAGTGTCAACCTCTCCGAGGGGGA...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TGTCCCCTGAGGTTTGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGCGGTTTGGAGGCATaGATGCAGGTCAGCGTCTTG +
Preference number: 5 (lower is better)
Translates to: CPLRFVSSPKSWLQRLRLCGLEA*MQVSVL
Trigger: CAAGACGCTGACCTGCATCAATGCCTCCAAACCGCA...CAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACAAACCTCAGGGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTACTGCTCCAGTGCGGTTaGGAGGCATTGATGCAGGTC +
Preference number: 5 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLLLQCG*EALMQV
Trigger: GACCTGCATCAATGCCTCCAAACCGCACTGGAGCAG...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTACCAACTGAGGTCCCATaGGCAGGTGAGGGTGTCACT +
Preference number: 5 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLPTEVP*AGEGVT
Trigger: AGTGACACCCTCACCTGCCAATGGGACCTCAGTTGG...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATCCAACTGAGGTCCCATaGGCAGGTGAGGGTGTCACT +
Preference number: 5 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNPTEVP*AGEGVT
Trigger: AGTGACACCCTCACCTGCCAATGGGACCTCAGTTGG...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGTCAGGCAGTCCTGGGTaGTCACACGCCAGGGACTCC +
Preference number: 5 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVSGSPG*SHARDS
Trigger: GGAGTCCCTGGCGTGTGACAACCCAGGACTGCCTGA...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAATCAGGCAGTCCTGGGTaGTCACACGCCAGGGACTCC +
Preference number: 5 (lower is better)
Translates to: CKFSKELASKAQAVITWKSGSPG*SHARDS
Trigger: GGAGTCCCTGGCGTGTGACAACCCAGGACTGCCTGA...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GCTGCGACCCAACGCCACAGGGTCTCTGATGAATGTCTGAGGAGGTCCCGACAGATGTTCAAAACTGTCTaGGTTAAAGACACAGTGGGG +
Preference number: 5 (lower is better)
Translates to: AATQRHRVSDECLRRSRQMFKTV*VKDTVG
Trigger: CCCCACTGTGTCTTTAACCAAGACAGTTTTGAACAT...CTGTCGGGACCTCCTCAGACATTCATCAGAGACCCTGTGGCGTTGGGTCGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197425.2
CDS-3UTR CAA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCGCAAGGACTCTTCCATaGCTTCCAGTGCTTCTTGGG +
Preference number: 5 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVARTLP*LPVLLG
Trigger: CCCAAGAAGCACTGGAAGCAATGGAAGAGTCCTTGC...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TGGGAGGGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACGAGAGGTTGACACTCTaGACCTGCAGTTCCACCCCG +
Preference number: 5 (lower is better)
Translates to: WEGLLLGNILFLLTFGLDERLTL*TCSSTP
Trigger: CGGGGTGGAACTGCAGGTCAAGAGTGTCAACCTCTC...GTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACCCTCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGCGGCCGATGGTGGCATaGTGCACTGCTCCTCCACAT +
Preference number: 5 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVRPMVA*CTAPPH
Trigger: ATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCG...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAATGCTTCCAGTGCTTCTaGGGATGGCAGGAGACCTGG +
Preference number: 5 (lower is better)
Translates to: CKFSKELASKAQAVITWKCFQCF*GWQETW
Trigger: CCAGGTCTCCTGCCATCCCAAGAAGCACTGGAAGCA...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTCCGGGCCGAGTTGAGTaGCTTCAGGGACGGCAGACC +
Preference number: 5 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFPGRVE*LQGRQT
Trigger: GGTCTGCCGTCCCTGAAGCAACTCAACTCGGCCCGG...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TGTAAGTTCTCCAAAGAGCTGGCTTCAAAGGCTCAGGCTGTGATCACTTGGAAAGAGAGGTTGACACTCTaGACCTGCAGTTCCACCCCG +
Preference number: 5 (lower is better)
Translates to: CKFSKELASKAQAVITWKERLTL*TCSSTP
Trigger: CGGGGTGGAACTGCAGGTCAAGAGTGTCAACCTCTC...TTTCCAAGTGATCACAGCCTGAGCCTTTGAAGCCAGCTCTTTGGAGAACTTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGTCCCCCTCGGAGAGGTaGACACTCTTGACCTGCAGT +
Preference number: 5 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVSPSER*TLLTCS
Trigger: ACTGCAGGTCAAGAGTGTCAACCTCTCCGAGGGGGA...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TGTGGGAGGGCTCACGAGTGTATCCCGTTCGAAAAATATTTAATCCTGATGGGTCTGCTCCAGTGCGGTTaGGAGGCATTGATGCAGGTC +
Preference number: 5 (lower is better)
Translates to: CGRAHECIPFEKYLILMGLLQCG*EALMQV
Trigger: GACCTGCATCAATGCCTCCAAACCGCACTGGAGCAG...ACCCATCAGGATTAAATATTTTTCGAACGGGATACACTCGTGAGCCCTCCCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GACAGCCTAGGAGCCCAGGTGGAAATCAGAGCAGATCCCTGGCTTTCAGGTCAGAAACTTCATACTCTCTaGTTTCCCCAGTCTCGTAGA +
Preference number: 5 (lower is better)
Translates to: DSLGAQVEIRADPWLSGQKLHTL*FPQSRR
Trigger: TCTACGAGACTGGGGAAACAAGAGAGTATGAAGTTT...CTGACCTGAAAGCCAGGGATCTGCTCTGATTTCCACCTGGGCTCCTAGGCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATTCCCCCTCGGAGAGGTaGACACTCTTGACCTGCAGT +
Preference number: 5 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNSPSER*TLLTCS
Trigger: ACTGCAGGTCAAGAGTGTCAACCTCTCCGAGGGGGA...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS GCA 90 bp CGTAGCCAGTGTAGACCGTCACATTGTAAGTGCATTCCAGGAAGCTaGTGTAGGGTTGTGGAGGGAAATCACTTGAGTCAATGTATCCCT +
Preference number: 5 (lower is better)
Translates to: RSQCRPSHCKCIPGS*CRVVEGNHLSQCIP
Trigger: AGGGATACATTGACTCAAGTGATTTCCCTCCACAACCCTACAGCAGCTTCCTGGAATGCACTTACAATGTGACGGTCTACACTGGCTACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS-3UTR CAA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGGAGAGGTTGACACTCTaGACCTGCAGTTCCACCCCG +
Preference number: 5 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGERLTL*TCSSTP
Trigger: CGGGGTGGAACTGCAGGTCAAGAGTGTCAACCTCTC...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CACTTGGAAAGATGGTCCCCCAGGCAGAGGTCAGAATATTTATGTTGGCAAAATTGCGGTTTGGAGGCATaGATGCAGGTCAGCGTCTTG +
Preference number: 5 (lower is better)
Translates to: HLERWSPRQRSEYLCWQNCGLEA*MQVSVL
Trigger: CAAGACGCTGACCTGCATCAATGCCTCCAAACCGCA...ATTTTGCCAACATAAATATTCTGACCTCTGCCTGGGGGACCATCTTTCCAAGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CAGCACCTAACTCTGACACCTTTCTTAAGGACTGAACTTAGGAAACAGTCTTTTCGGCCGATGGTGGCATaGTGCACTGCTCCTCCACAT +
Preference number: 5 (lower is better)
Translates to: QHLTLTPFLRTELRKQSFRPMVA*CTAPPH
Trigger: ATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCG...AAAAGACTGTTTCCTAAGTTCAGTCCTTAAGAAAGGTGTCAGAGTTAGGTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GGTCAGAATATTTATGTTGGCAAAATGAGTCTACCAAAAGGCAAGCTAAGGGGGTGCGGTTTGGAGGCATaGATGCAGGTCAGCGTCTTG +
Preference number: 5 (lower is better)
Translates to: GQNIYVGKMSLPKGKLRGCGLEA*MQVSVL
Trigger: CAAGACGCTGACCTGCATCAATGCCTCCAAACCGCA...CCCCCTTAGCTTGCCTTTTGGTAGACTCATTTTGCCAACATAAATATTCTGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGAGGGCTCTGGCCAGTTaGGAGACAGCACCACCCCAG +
Preference number: 5 (lower is better)
Translates to: PVSKPSILNIVKYSEETVRALAS*ETAPPQ
Trigger: CTGGGGTGGTGCTGTCTCCAAACTGGCCAGAGCCCT...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGGGCAGGTACAGCCGCTaGTACAGGATCTGGTACCCG +
Preference number: 5 (lower is better)
Translates to: PVSKPSILNIVKYSEETVGRYSR*YRIWYP
Trigger: CGGGTACCAGATCCTGTACAAGCGGCTGTACCTGCC...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GCCAGGGAGTTTGTGAGAACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCATGTTCAAAACTGTCTaGGTTAACTTTACAGATGGG +
Preference number: 5 (lower is better)
Translates to: AREFVRTRLGGSVSHGYVMFKTV*VNFTDG
Trigger: CCCATCTGTAAAGTTAACCAAGACAGTTTTGAACAT...GACATAGCCATGAGAGACACTGCCTCCCAATCTTGTTCTCACAAACTCCCTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGCTGCTCCAGTGCGGTTaGGAGGCATTGATGCAGGTC +
Preference number: 5 (lower is better)
Translates to: PVSKPSILNIVKYSEETVLLQCG*EALMQV
Trigger: GACCTGCATCAATGCCTCCAAACCGCACTGGAGCAG...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGCCAACTGAGGTCCCATaGGCAGGTGAGGGTGTCACT +
Preference number: 5 (lower is better)
Translates to: PVSKPSILNIVKYSEETVPTEVP*AGEGVT
Trigger: AGTGACACCCTCACCTGCCAATGGGACCTCAGTTGG...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp TTAAGAAAGGGTCTGCCTGCTCATCTTATTCTCGTTCCTTGGGCCCCAGGGAATATGTTCAAAACTGTCTaGGTTAACTTTACAGATGGG +
Preference number: 5 (lower is better)
Translates to: LRKGLPAHLILVPWAPGNMFKTV*VNFTDG
Trigger: CCCATCTGTAAAGTTAACCAAGACAGTTTTGAACAT...ATTCCCTGGGGCCCAAGGAACGAGAATAAGATGAGCAGGCAGACCCTTTCTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp ACAAGATTGGGAGGCAGTGTCTCTCATGGCTATGTCAAAGGCCAAGACAGCCTAATGTTCAAAACTGTCTaGGTTAACTTTACAGATGGG +
Preference number: 5 (lower is better)
Translates to: TRLGGSVSHGYVKGQDSLMFKTV*VNFTDG
Trigger: CCCATCTGTAAAGTTAACCAAGACAGTTTTGAACAT...TAGGCTGTCTTGGCCTTTGACATAGCCATGAGAGACACTGCCTCCCAATCTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp GGTCTGCTGTTGGGAAATATTTTGTTTTTACTGACGTTCGGGCTGGACCTTGTGAAACTTCATACTCTCTaGTTTCCCCAGTCTCGTAGA +
Preference number: 5 (lower is better)
Translates to: GLLLGNILFLLTFGLDLVKLHTL*FPQSRR
Trigger: TCTACGAGACTGGGGAAACAAGAGAGTATGAAGTTT...CACAAGGTCCAGCCCGAACGTCAGTAAAAACAAAATATTTCCCAACAGCAGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGTGCGGTTTGGAGGCATaGATGCAGGTCAGCGTCTTG +
Preference number: 5 (lower is better)
Translates to: PVSKPSILNIVKYSEETVCGLEA*MQVSVL
Trigger: CAAGACGCTGACCTGCATCAATGCCTCCAAACCGCA...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGAAACTTCATACTCTCTaGTTTCCCCAGTCTCGTAGA +
Preference number: 5 (lower is better)
Translates to: PVSKPSILNIVKYSEETVKLHTL*FPQSRR
Trigger: TCTACGAGACTGGGGAAACAAGAGAGTATGAAGTTT...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS-3UTR CAA 90 bp CCGGTGTCAAAGCCTTCAATTTTAAATATAGTTAAGTATAGCGAAGAAACAGTGATGTTCAAAACTGTCTaGGTTAACTTTACAGATGGG +
Preference number: 5 (lower is better)
Translates to: PVSKPSILNIVKYSEETVMFKTV*VNFTDG
Trigger: CCCATCTGTAAAGTTAACCAAGACAGTTTTGAACAT...CACTGTTTCTTCGCTATACTTAACTATATTTAAAATTGAAGGCTTTGACACCGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS CCA 72 bp TGTGGTCGCCAGTGCAGTGAAGGGCGCGATCTGCAGTaGCGCAGGCGCCGTGGGCTGCTCGGGGTCTTCAGG +
Preference number: 6 (lower is better)
Translates to: CGRQCSEGRDLQ*RRRRGLLGVFR
Trigger: CCTGAAGACCCCGAGCAGCCCACGGCGCCTGCGCCACTGCAGATCGCGCCCTTCACTGCACTGGCGACCACA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS GCA 72 bp CCCAGGTGGCAATGGAAGTGGGCCACCCCGCCCGAGTaGAGATCCATCACCGTGACCTCTCCGGCATCGGGC +
Preference number: 6 (lower is better)
Translates to: PRWQWKWATPPE*RSITVTSPASG
Trigger: GCCCGATGCCGGAGAGGTCACGGTGATGGATCTGCACTCGGGCGGGGTGGCCCACTTCCATTGCCACCTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 72 bp TCCTGGCTCTCCTCGGAGGCAGACCCGGTCAGCTCATaGTCCCCCTTGTCCAGCGGGCTACCGGGGCTGCTG +
Preference number: 6 (lower is better)
Translates to: SWLSSEADPVSS*SPLSSGLPGLL
Trigger: CAGCAGCCCCGGTAGCCCGCTGGACAAGGGGGACAATGAGCTGACCGGGTCTGCCTCCGAGGAGAGCCAGGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 90 bp GTGGTGGTCTCCTGGCTCTCCTCGGAGGCAGACCCGGTCAGCTCATaGTCCCCCTTGTCCAGCGGGCTACCGGGGCTGCTGTCATCAGGG +
Preference number: 6 (lower is better)
Translates to: VVVSWLSSEADPVSS*SPLSSGLPGLLSSG
Trigger: CCCTGATGACAGCAGCCCCGGTAGCCCGCTGGACAAGGGGGACAATGAGCTGACCGGGTCTGCCTCCGAGGAGAGCCAGGAGACCACCAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp GCTGTCATCAGGGGCCTGAGCGGGCTGAGGGCTGTGTaGGAGTGTGGTCGCCAGTGCAGTGAAGGGCGCGAT +
Preference number: 6 (lower is better)
Translates to: AVIRGLSGLRAV*ECGRQCSEGRD
Trigger: ATCGCGCCCTTCACTGCACTGGCGACCACACTCCCACACAGCCCTCAGCCCGCTCAGGCCCCTGATGACAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 72 bp TCCTCGGAGGCAGACCCGGTCAGCTCATTGTCCCCCTaGTCCAGCGGGCTACCGGGGCTGCTGTCATCAGGG +
Preference number: 6 (lower is better)
Translates to: SSEADPVSSLSP*SSGLPGLLSSG
Trigger: CCCTGATGACAGCAGCCCCGGTAGCCCGCTGGACAAGGGGGACAATGAGCTGACCGGGTCTGCCTCCGAGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp TGGGCTGCTCGGGGTCTTCAGGCTCACGCAGCTTCGTaGTGGCAGAGGCAGGAGACCCCAGTCTCTGCAGAG +
Preference number: 6 (lower is better)
Translates to: WAARGLQAHAAS*WQRQETPVSAE
Trigger: CTCTGCAGAGACTGGGGTCTCCTGCCTCTGCCACCACGAAGCTGCGTGAGCCTGAAGACCCCGAGCAGCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 90 bp GGACACTGGCCTCGTCGGGCAGCGCAGGGGGCAAGGACTCTTCCATaGCTTCCAGTGCTTCTTGGGATGGCAGGAGACCTGGGGCTGCTG +
Preference number: 6 (lower is better)
Translates to: GHWPRRAAQGARTLP*LPVLLGMAGDLGLL
Trigger: CAGCAGCCCCAGGTCTCCTGCCATCCCAAGAAGCACTGGAAGCAATGGAAGAGTCCTTGCCCCCTGCGCTGCCCGACGAGGCCAGTGTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS TCA 72 bp CCGGGCCCTGTTCCAGAGAGTGGCCGGGGTCGCAGGTaGACTCCACAATGGTGCCGATGTTGTAGGTGGGGT +
Preference number: 6 (lower is better)
Translates to: PGPVPESGRGRR*TPQWCRCCRWG
Trigger: ACCCCACCTACAACATCGGCACCATTGTGGAGTTCACCTGCGACCCCGGCCACTCTCTGGAACAGGGCCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp GCTGCTCGGGGTCTTCAGGCTCACGCAGCTTCGTGGTaGCAGAGGCAGGAGACCCCAGTCTCTGCAGAGTTG +
Preference number: 6 (lower is better)
Translates to: AARGLQAHAASW*QRQETPVSAEL
Trigger: CAACTCTGCAGAGACTGGGGTCTCCTGCCTCTGCCACCACGAAGCTGCGTGAGCCTGAAGACCCCGAGCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp TCCCTCCGGGTCGGAGAAGCTCACACCGCAGAGAGCTaGGGCCTGCTCCGTGGTGATGATGGTGGTAGTGAC +
Preference number: 6 (lower is better)
Translates to: SLRVGEAHTAES*GLLRGDDGGSD
Trigger: GTCACTACCACCATCATCACCACGGAGCAGGCCCCAGCTCTCTGCGGTGTGAGCTTCTCCGACCCGGAGGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp CGGTTCCCGGGAAACTGGGGGAGAGAACTCGGCCGATaGTGGCATTGTGCACTGCTCCTCCACATGGGGCTG +
Preference number: 6 (lower is better)
Translates to: RFPGNWGRELGR*WHCALLLHMGL
Trigger: CAGCCCCATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp CGCAGAGCTGGCTGCCATTGGCGGTTCCCGGGAAACTaGGGGAGAGAACTCGGCCGATGGTGGCATTGTGCA +
Preference number: 6 (lower is better)
Translates to: RRAGCHWRFPGN*GRELGRWWHCA
Trigger: TGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp GAGCCTCTATGGTCCACACGCAGAGCTGGCTGCCATTaGCGGTTCCCGGGAAACTGGGGGAGAGAACTCGGC +
Preference number: 6 (lower is better)
Translates to: EPLWSTRRAGCH*RFPGNWGRELG
Trigger: GCCGAGTTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS TCA 72 bp CAGGCTCCTGGCTGCTCCAGTGCGGTTTGGAGGCATTaGTGCAGGTCAGCGTCTTGGCTCCCTGCAGCTCGT +
Preference number: 6 (lower is better)
Translates to: QAPGCSSAVWRH*CRSASWLPAAR
Trigger: ACGAGCTGCAGGGAGCCAAGACGCTGACCTGCATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGAGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS GCA 72 bp CTCGTCGGGCAGCGCAGGGGGCAAGGACTCTTCCATTaGTTCCAGTGCTTCTTGGGATGGCAGGAGACCTGG +
Preference number: 6 (lower is better)
Translates to: LVGQRRGQGLFH*FQCFLGWQETW
Trigger: CCAGGTCTCCTGCCATCCCAAGAAGCACTGGAAGCAATGGAAGAGTCCTTGCCCCCTGCGCTGCCCGACGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS GCA 72 bp CCTCTGGAGCCTCTATGGTCCACACGCAGAGCTGGCTaGCATTGGCGGTTCCCGGGAAACTGGGGGAGAGAA +
Preference number: 6 (lower is better)
Translates to: PLEPLWSTRRAG*HWRFPGNWGRE
Trigger: TTCTCTCCCCCAGTTTCCCGGGAACCGCCAATGGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTCCAGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp TTCCCGGGAAACTGGGGGAGAGAACTCGGCCGATGGTaGCATTGTGCACTGCTCCTCCACATGGGGCTGAGC +
Preference number: 6 (lower is better)
Translates to: FPGNWGRELGRW*HCALLLHMGLS
Trigger: GCTCAGCCCCATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTTCCCGGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 72 bp CCTCGTCGGGCAGCGCAGGGGGCAAGGACTCTTCCATaGCTTCCAGTGCTTCTTGGGATGGCAGGAGACCTG +
Preference number: 6 (lower is better)
Translates to: PRRAAQGARTLP*LPVLLGMAGDL
Trigger: CAGGTCTCCTGCCATCCCAAGAAGCACTGGAAGCAATGGAAGAGTCCTTGCCCCCTGCGCTGCCCGACGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 72 bp ACAGGCTCCTGGCTGCTCCAGTGCGGTTTGGAGGCATaGATGCAGGTCAGCGTCTTGGCTCCCTGCAGCTCG +
Preference number: 6 (lower is better)
Translates to: TGSWLLQCGLEA*MQVSVLAPCSS
Trigger: CGAGCTGCAGGGAGCCAAGACGCTGACCTGCATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGAGCCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 72 bp GCTGAGCAGACAGGCTCCTGGCTGCTCCAGTGCGGTTaGGAGGCATTGATGCAGGTCAGCGTCTTGGCTCCC +
Preference number: 6 (lower is better)
Translates to: AEQTGSWLLQCG*EALMQVSVLAP
Trigger: GGGAGCCAAGACGCTGACCTGCATCAATGCCTCCAAACCGCACTGGAGCAGCCAGGAGCCTGTCTGCTCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 90 bp AGCCGCTTGTACAGGATCTGGTACCCGTTCTCAGGCAGTCCTGGGTaGTCACACGCCAGGGACTCCTCAGAGACACAGTGGGGCAGGCGA +
Preference number: 6 (lower is better)
Translates to: SRLYRIWYPFSGSPG*SHARDSSETQWGRR
Trigger: TCGCCTGCCCCACTGTGTCTCTGAGGAGTCCCTGGCGTGTGACAACCCAGGACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS GCA 72 bp AAACTGGGGGAGAGAACTCGGCCGATGGTGGCATTGTaGACTGCTCCTCCACATGGGGCTGAGCAGACAGGC +
Preference number: 6 (lower is better)
Translates to: KLGERTRPMVAL*TAPPHGAEQTG
Trigger: GCCTGTCTGCTCAGCCCCATGTGGAGGAGCAGTGCACAATGCCACCATCGGCCGAGTTCTCTCCCCCAGTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp CTACCAGTAGAGTCTGGTTGGCCAGGACTGTCAGAGTaGGACCGTCCACTCCTCGGATGGAGAGCAGCTCCC +
Preference number: 6 (lower is better)
Translates to: LPVESGWPGLSE*DRPLLGWRAAP
Trigger: GGGAGCTGCTCTCCATCCGAGGAGTGGACGGTCCCACTCTGACAGTCCTGGCCAACCAGACTCTACTGGTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp TGCGGATCACCTGGCCCTCTACCAGTAGAGTCTGGTTaGCCAGGACTGTCAGAGTGGGACCGTCCACTCCTC +
Preference number: 6 (lower is better)
Translates to: CGSPGPLPVESG*PGLSEWDRPLL
Trigger: GAGGAGTGGACGGTCCCACTCTGACAGTCCTGGCCAACCAGACTCTACTGGTAGAGGGCCAGGTGATCCGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp TGGCCCTTGCCAAAGATGAGGCCTGCAGGGTCGGAGTaGAACTGGATGGTGAGGTCCGGTGTGGAGGAGTAC +
Preference number: 6 (lower is better)
Translates to: WPLPKMRPAGSE*NWMVRSGVEEY
Trigger: GTACTCCTCCACACCGGACCTCACCATCCAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGCAAGGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS TCA 72 bp GGGGTAGGCGGAGGCTGGAGTATTGTCGGCACCTCGTaGCGTAGATGTAGGCTCCTCCCAGTAGCAAGGAGA +
Preference number: 6 (lower is better)
Translates to: GVGGGWSIVGTS*RRCRLLPVARR
Trigger: TCTCCTTGCTACTGGGAGGAGCCTACATCTACGTCACGAGGTGCCGACAATACTCCAGCCTCCGCCTACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp TACTCTCCAGCGAGGCAGAGGGCAGGAGGTAGGCAGTaGAAGGGTGCATCTCTCCCTCTGGACCACCATCTT +
Preference number: 6 (lower is better)
Translates to: YSPARQRAGGRQ*KGASLPLDHHL
Trigger: AAGATGGTGGTCCAGAGGGAGAGATGCACCCTTCCACTGCCTACCTCCTGCCCTCTGCCTCGCTGGAGAGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp GGGGGCAAGGACTCTTCCATTGCTTCCAGTGCTTCTTaGGATGGCAGGAGACCTGGGGCTGCTGATGTCACC +
Preference number: 6 (lower is better)
Translates to: GGKDSSIASSAS*DGRRPGAADVT
Trigger: GGTGACATCAGCAGCCCCAGGTCTCCTGCCATCCCAAGAAGCACTGGAAGCAATGGAAGAGTCCTTGCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp CCTGGAAGGTCCGGAAGTAGACAGAGATGGTGTTGGTaGGGCTGCGGATCACCTGGCCCTCTACCAGTAGAG +
Preference number: 6 (lower is better)
Translates to: PGRSGSRQRWCW*GCGSPGPLPVE
Trigger: CTCTACTGGTAGAGGGCCAGGTGATCCGCAGCCCCACCAACACCATCTCTGTCTACTTCCGGACCTTCCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp CAGCCTTTCAAGGTGCAGGTGAAGCTTCTGACCCTCTaGAGCCTCTATGGTCCACACGCAGAGCTGGCTGCC +
Preference number: 6 (lower is better)
Translates to: QPFKVQVKLLTL*SLYGPHAELAA
Trigger: GGCAGCCAGCTCTGCGTGTGGACCATAGAGGCTCCAGAGGGTCAGAAGCTTCACCTGCACCTTGAAAGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp GCAGGTGAGGGTGTCACTCCCCACAATGTCATAGCCTaGGTCACACTGGTATGTGATCCGGGCTCCCCTGAC +
Preference number: 6 (lower is better)
Translates to: AGEGVTPHNVIA*VTLVCDPGSPD
Trigger: GTCAGGGGAGCCCGGATCACATACCAGTGTGACCCAGGCTATGACATTGTGGGGAGTGACACCCTCACCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp GACTCTCCGGGCAGGTACAGCCGCTTGTACAGGATCTaGTACCCGTTCTCAGGCAGTCCTGGGTTGTCACAC +
Preference number: 6 (lower is better)
Translates to: DSPGRYSRLYRI*YPFSGSPGLSH
Trigger: GTGTGACAACCCAGGACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCGGCTGTACCTGCCCGGAGAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS GCA 72 bp AGGTCCGGAAGTAGACAGAGATGGTGTTGGTGGGGCTaGGGATCACCTGGCCCTCTACCAGTAGAGTCTGGT +
Preference number: 6 (lower is better)
Translates to: RSGSRQRWCWWG*GSPGPLPVESG
Trigger: ACCAGACTCTACTGGTAGAGGGCCAGGTGATCCGCAGCCCCACCAACACCATCTCTGTCTACTTCCGGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS GCA 72 bp CTCAAAGGCCTCAAAGCGGATGTTGAAGGCGGAAGCTaGCTGGCCCTGGTCCGACGTGAACTCAATGCGGAT +
Preference number: 6 (lower is better)
Translates to: LKGLKADVEGGS*LALVRRELNAD
Trigger: ATCCGCATTGAGTTCACGTCGGACCAGGGCCAGGCAGCTTCCGCCTTCAACATCCGCTTTGAGGCCTTTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp CATCCTGGAAGGTCCGGAAGTAGACAGAGATGGTGTTaGTGGGGCTGCGGATCACCTGGCCCTCTACCAGTA +
Preference number: 6 (lower is better)
Translates to: HPGRSGSRQRWC*WGCGSPGPLPV
Trigger: TACTGGTAGAGGGCCAGGTGATCCGCAGCCCCACCAACACCATCTCTGTCTACTTCCGGACCTTCCAGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp TCAAAGCGGATGTTGAAGGCGGAAGCTGCCTGGCCCTaGTCCGACGTGAACTCAATGCGGATACTGCTACCC +
Preference number: 6 (lower is better)
Translates to: SKRMLKAEAAWP*SDVNSMRILLP
Trigger: GGGTAGCAGTATCCGCATTGAGTTCACGTCGGACCAGGGCCAGGCAGCTTCCGCCTTCAACATCCGCTTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp TTGCCAAAGATGAGGCCTGCAGGGTCGGAGTGGAACTaGATGGTGAGGTCCGGTGTGGAGGAGTACAGCTTC +
Preference number: 6 (lower is better)
Translates to: LPKMRPAGSEWN*MVRSGVEEYSF
Trigger: GAAGCTGTACTCCTCCACACCGGACCTCACCATCCAGTTCCACTCCGACCCTGCAGGCCTCATCTTTGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 72 bp TACAGGATCTGGTACCCGTTCTCAGGCAGTCCTGGGTaGTCACACGCCAGGGACTCCTCAGAGACACAGTGG +
Preference number: 6 (lower is better)
Translates to: YRIWYPFSGSPG*SHARDSSETQW
Trigger: CCACTGTGTCTCTGAGGAGTCCCTGGCGTGTGACAACCCAGGACTGCCTGAGAACGGGTACCAGATCCTGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS CAA 72 bp ATGAAGGTGAGGGACTCTCCGGGCAGGTACAGCCGCTaGTACAGGATCTGGTACCCGTTCTCAGGCAGTCCT +
Preference number: 6 (lower is better)
Translates to: MKVRDSPGRYSR*YRIWYPFSGSP
Trigger: AGGACTGCCTGAGAACGGGTACCAGATCCTGTACAAGCGGCTGTACCTGCCCGGAGAGTCCCTCACCTTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS TCA 72 bp CGCTCAGCAGGCCTTCGAAGGGCACGCTCTCTGTTCTaGGAGAGTCGTACAGGAGGGCAGATGTGTTTGTTC +
Preference number: 6 (lower is better)
Translates to: RSAGLRRARSLF*ESRTGGQMCLF
Trigger: GAACAAACACATCTGCCCTCCTGTACGACTCTCTCAGAACAGAGAGCGTGCCCTTCGAAGGCCTGCTGAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CCA 72 bp CTTGTACAGGATCTGGTACCCGTTCTCAGGCAGTCCTaGGTTGTCACACGCCAGGGACTCCTCAGAGACACA +
Preference number: 6 (lower is better)
Translates to: LVQDLVPVLRQS*VVTRQGLLRDT
Trigger: TGTGTCTCTGAGGAGTCCCTGGCGTGTGACAACCCAGGACTGCCTGAGAACGGGTACCAGATCCTGTACAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000212480.2
CDS CCA 72 bp TGGTTAACTTTACAGATGGGCAGGGGCCCACTCCAATaGGACGGCTGTCCCAGAATGCACCGGATGGTCACT +
Preference number: 6 (lower is better)
Translates to: WLTLQMGRGPLQ*DGCPRMHRMVT
Trigger: AGTGACCATCCGGTGCATTCTGGGACAGCCGTCCCATTGGAGTGGGCCCCTGCCCATCTGTAAAGTTAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000200575.5
ENSMUST00000212480.2
CDS CAA 72 bp ACAAAACGGCGGGTCGCTGCTCCAACTGAGGTCCCATaGGCAGGTGAGGGTGTCACTCCCCACAATGTCATA +
Preference number: 6 (lower is better)
Translates to: TKRRVAAPTEVP*AGEGVTPHNVI
Trigger: TATGACATTGTGGGGAGTGACACCCTCACCTGCCAATGGGACCTCAGTTGGAGCAGCGACCCGCCGTTTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS GCA 72 bp ACTAGCAGCACAGGGTCTGAAATGAGGCGGGTGGAGTaGTCCACCTCCCCGGGGTCAGTACAGTACATAATT +
Preference number: 6 (lower is better)
Translates to: TSSTGSEMRRVE*STSPGSVQYII
Trigger: AATTATGTACTGTACTGACCCCGGGGAGGTGGAGCACTCCACCCGCCTCATTTCAGACCCTGTGCTGCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS TCA 72 bp ACCAGCTCTGTGTGGGAAGTAGTTTTCCAGCCGTTCTaGATTTCAGGCAAGTCTGAGCAGGAGTCGTTCCGT +
Preference number: 6 (lower is better)
Translates to: TSSVWEVVFQPF*ISGKSEQESFR
Trigger: ACGGAACGACTCCTGCTCAGACTTGCCTGAAATTCAGAACGGCTGGAAAACTACTTCCCACACAGAGCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 72 bp TGCTGCCGCTTCTTCCAATGCATGTTCAAAACTGTCTaGGTTAACTTTACAGATGGGCAGGGGCCCACTCCA +
Preference number: 6 (lower is better)
Translates to: CCRFFQCMFKTV*VNFTDGQGPTP
Trigger: TGGAGTGGGCCCCTGCCCATCTGTAAAGTTAACCAAGACAGTTTTGAACATGCATTGGAAGAAGCGGCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075387.11
CDS CAA 72 bp TGCCGCTTCTGCTTCCAATGCATGTTCAAAACTGTCTaGGTTAACTTTACAGATGGGCAGGGGCCCACTCCA +
Preference number: 6 (lower is better)
Translates to: CRFCFQCMFKTV*VNFTDGQGPTP
Trigger: TGGAGTGGGCCCCTGCCCATCTGTAAAGTTAACCAAGACAGTTTTGAACATGCATTGGAAGCAGAAGCGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079491.14
ENSMUST00000200575.5
CDS CAA 72 bp TGCTGCCGCTTCTTCCAATGCATGTTCAAAACTGTCTaGGTTAAAGACACAGTGGGGCAGGCGAGATGTCCA +
Preference number: 6 (lower is better)
Translates to: CCRFFQCMFKTV*VKDTVGQARCP
Trigger: TGGACATCTCGCCTGCCCCACTGTGTCTTTAACCAAGACAGTTTTGAACATGCATTGGAAGAAGCGGCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197425.2
CDS CAA 90 bp GGTGCCGATGTTGTAGGTGGGGTCCGATGTGGTGAAATTCCCATTTaGGATGTAGGGTTCATAGCAGTGACCTTTCTCAAAGGCCTCAAA +
Preference number: 6 (lower is better)
Translates to: GADVVGGVRCGEIPI*DVGFIAVTFLKGLK
Trigger: TTTGAGGCCTTTGAGAAAGGTCACTGCTATGAACCCTACATCCAAAATGGGAATTTCACCACATCGGACCCCACCTACAACATCGGCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS TCA 72 bp CAATGGTGCCGATGTTGTAGGTGGGGTCCGATGTGGTaGAATTCCCATTTTGGATGTAGGGTTCATAGCAGT +
Preference number: 6 (lower is better)
Translates to: QWCRCCRWGPMW*NSHFGCRVHSS
Trigger: ACTGCTATGAACCCTACATCCAAAATGGGAATTTCACCACATCGGACCCCACCTACAACATCGGCACCATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000075387.11
ENSMUST00000079491.14
ENSMUST00000197425.2
ENSMUST00000200575.5
ENSMUST00000212480.2
ENSMUST00000212758.2
CDS CAA 72 bp CGCTTCTGCTACTTCCAATGCATGTTCAAAACTGTCTaGGTTAACTTTACAGATGGGCAGGGGCCCACTCCA +
Preference number: 6 (lower is better)
Translates to: RFCYFQCMFKTV*VNFTDGQGPTP
Trigger: TGGAGTGGGCCCCTGCCCATCTGTAAAGTTAACCAAGACAGTTTTGAACATGCATTGGAAGTAGCAGAAGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212480.2