RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SEZ6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000632

Ensembl transcript IDs: ENSMUST00000000646.14, ENSMUST00000093995.10, ENSMUST00000140630.2, ENSMUST00000151982.8

Found 520 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGCCTGGCCCTTCAGCACATAACCAGGGGCACAGGAGAAGTGGATaGTGGCCCCTGCTGGGTGAAGCCGCTTCTCAGGGCTGCGGGCAC +
Preference number: 1 (lower is better)
Translates to: WPGPSAHNQGHRRSG*WPLLGEAASQGCGH
Trigger: GTGCCCGCAGCCCTGAGAAGCGGCTTCACCCAGCAGGGGCCACCATCCACTTCTCCTGTGCCCCTGGTTATGTGCTGAAGGGCCAGGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 90 bp CCTGGCCCTTCAGCACATAACCAGGGGCACAGGAGAAGTGGATGGTaGCCCCTGCTGGGTGAAGCCGCTTCTCAGGGCTGCGGGCACCAT +
Preference number: 1 (lower is better)
Translates to: PGPSAHNQGHRRSGW*PLLGEAASQGCGHH
Trigger: ATGGTGCCCGCAGCCCTGAGAAGCGGCTTCACCCAGCAGGGGCCACCATCCACTTCTCCTGTGCCCCTGGTTATGTGCTGAAGGGCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 90 bp CTTCAGCACATAACCAGGGGCACAGGAGAAGTGGATGGTGGCCCCTaGTGGGTGAAGCCGCTTCTCAGGGCTGCGGGCACCATTCTCCGG +
Preference number: 1 (lower is better)
Translates to: LQHITRGTGEVDGGP*WVKPLLRAAGTILR
Trigger: CCGGAGAATGGTGCCCGCAGCCCTGAGAAGCGGCTTCACCCAGCAGGGGCCACCATCCACTTCTCCTGTGCCCCTGGTTATGTGCTGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 90 bp CGCTTCTCAGGGCTGCGGGCACCATTCTCCGGGGCGCTGAGGCCATaGCACGGCTTGAATTGTTCCAAGAGACACTTGGGGGCCCTGTCA +
Preference number: 1 (lower is better)
Translates to: RFSGLRAPFSGALRP*HGLNCSKRHLGALS
Trigger: TGACAGGGCCCCCAAGTGTCTCTTGGAACAATTCAAGCCGTGCCATGGCCTCAGCGCCCCGGAGAATGGTGCCCGCAGCCCTGAGAAGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 90 bp GAGAGCCGGGAGCCCTGCCGCTGGCCTGCGATGCAGGACTGCGTGTaGATCCCCAGGCTGCTCCCACCTAGATGGAAACTTCATATTCTC +
Preference number: 1 (lower is better)
Translates to: ESREPCRWPAMQDCV*IPRLLPPRWKLHIL
Trigger: GAGAATATGAAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGGCTCCCGGCTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 90 bp GACATCGGCCATGGAGGTAAAGAGCTTGAAGTGGCCACGGGGCCCTaGGTATTGGCCCAGGACCCGGGCTGTGAGGTCATCCCCATCGTA +
Preference number: 1 (lower is better)
Translates to: DIGHGGKELEVATGP*VLAQDPGCEVIPIV
Trigger: TACGATGGGGATGACCTCACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCCGATGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 90 bp TGGGTGGTGGGTCACTCCAATGCGAGGGGTGTCCAGGCACGCATTTaGTGCTGGCCTGGCCCTTCAGCACATAACCAGGGGCACAGGAGA +
Preference number: 1 (lower is better)
Translates to: WVVGHSNARGVQARI*CWPGPSAHNQGHRR
Trigger: TCTCCTGTGCCCCTGGTTATGTGCTGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACACCCCTCGCATTGGAGTGACCCACCACCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 90 bp TGGAACTGGATGGTGACATCGGCCATGGAGGTAAAGAGCTTGAAGTaGCCACGGGGCCCTGAGTATTGGCCCAGGACCCGGGCTGTGAGG +
Preference number: 1 (lower is better)
Translates to: WNWMVTSAMEVKSLK*PRGPEYWPRTRAVR
Trigger: CCTCACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCCGATGTCACCATCCAGTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 90 bp TGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTaGCCCTCCTCAGTCAGCCTGCAACTTCCAGGCTGGAGGTCCAGG +
Preference number: 1 (lower is better)
Translates to: WSPHMPGRMVAMCNK*PSSVSLQLPGWRSR
Trigger: CCTGGACCTCCAGCCTGGAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 90 bp AGAGTAGAGGGATGCCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTaGAGCGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAA +
Preference number: 1 (lower is better)
Translates to: RVEGCRRAVGCPALV*SVSIHPVGPSLSLE
Trigger: TTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCATCCCTCTACTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR GCA 90 bp GTTGCTCCCACGGGAAACTTGGGGCTGGATATGAGGCGTCGGCTGTaGTCCACATCCCCTGGGTCATGGCAAGATGTCACTCTCTGGCAT +
Preference number: 1 (lower is better)
Translates to: VAPTGNLGLDMRRRL*STSPGSWQDVTLWH
Trigger: ATGCCAGAGAGTGACATCTTGCCATGACCCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGCAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 90 bp GCCGTTGTAGAACCCATCCAGAGAGGCAGCCCTACAGATGGGTGGTaGGTCACTCCAATGCGAGGGGTGTCCAGGCACGCATTTGATGCT +
Preference number: 1 (lower is better)
Translates to: AVVEPIQRGSPTDGW*VTPMRGVSRHAFDA
Trigger: AGCATCAAATGCGTGCCTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTGCCTCTCTGGATGGGTTCTACAACGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 90 bp ACGGCCGTTGTAGAACCCATCCAGAGAGGCAGCCCTACAGATGGGTaGTGGGTCACTCCAATGCGAGGGGTGTCCAGGCACGCATTTGAT +
Preference number: 1 (lower is better)
Translates to: TAVVEPIQRGSPTDG*WVTPMRGVSRHAFD
Trigger: ATCAAATGCGTGCCTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTGCCTCTCTGGATGGGTTCTACAACGGCCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 90 bp GAATACTGGATCCCACCACCTGGTAACCAGGGTAGCACTGATAGGTaGCCACCGTGCCGTGCACCAGCTCAGGCTGTGATGGGTTCTTCC +
Preference number: 1 (lower is better)
Translates to: EYWIPPPGNQGSTDR*PPCRAPAQAVMGSS
Trigger: GGAAGAACCCATCACAGCCTGAGCTGGTGCACGGCACGGTGGTCACCTATCAGTGCTACCCTGGTTACCAGGTGGTGGGATCCAGTATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 90 bp CCCTGTCACTCCACTTGGGACTGCCTGCTTGCCGATCATGGCAGGTaGGAATGGCACTCCCCGTCAGCACAAAACCCTGGTCACAGACAT +
Preference number: 1 (lower is better)
Translates to: PCHSTWDCLLADHGR*EWHSPSAQNPGHRH
Trigger: ATGTCTGTGACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTGCCATGATCGGCAAGCAGGCAGTCCCAAGTGGAGTGACAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTaGAACTTCCAGGCTGGAGGTCCAGGGCAAAAGAGAAGCAGGAGA +
Preference number: 1 (lower is better)
Translates to: AGWWPCVTSAPPQSA*NFQAGGPGQKRSRR
Trigger: TCTCCTGCTTCTCTTTTGCCCTGGACCTCCAGCCTGGAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 90 bp TACAAAGTGGCCTCGGTCCGGACTGAGATTGCTCCTGGGGGTTCTTaGCTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCC +
Preference number: 1 (lower is better)
Translates to: YKVASVRTEIAPGGS*LLPHSWVLGHLLLS
Trigger: GGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 90 bp AGACATATTGCACAGTTGCTCCCACGGGAAACTTGGGGCTGGATATaGGGCGTCGGCTGTGCTCCACATCCCCTGGGTCATGGCAAGATG +
Preference number: 1 (lower is better)
Translates to: RHIAQLLPRETWGWI*GVGCAPHPLGHGKM
Trigger: CATCTTGCCATGACCCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 90 bp CAGATAAACTTCAAGGAAGGGCTCTCCCTCCTCAGAGTAGAGGGATaGCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTGGAGCGTGAGT +
Preference number: 1 (lower is better)
Translates to: QINFKEGLSLLRVEG*RRAVGCPALVWSVS
Trigger: ACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCATCCCTCTACTCTGAGGAGGGAGAGCCCTTCCTTGAAGTTTATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR GCA 90 bp CACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGAATGTAGCTaGCCTCTCCTGGCATGCCATAACACAGTGGCAGGAAGGGGGAAC +
Preference number: 1 (lower is better)
Translates to: HIPGSLDICSSPECS*PLLACHNTVAGRGN
Trigger: GTTCCCCCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR GCA 90 bp TGGCCTCGGTCCGGACTGAGATTGCTCCTGGGGGTTCTTGACTTCTaGCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGAATGT +
Preference number: 1 (lower is better)
Translates to: WPRSGLRLLLGVLDF*HIPGSLDICSSPEC
Trigger: ACATTCTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAGTCCGGACCGAGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 90 bp TTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTaGGCACAGCGGTGCCAAGAAAATAGGTCACTGTGGGCATTGCAG +
Preference number: 1 (lower is better)
Translates to: FYPRQMPLNPKKGPK*AQRCQENRSLWALQ
Trigger: CTGCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 90 bp GCAACTTCCAGGCTGGAGGTCCAGGGCAAAAGAGAAGCAGGAGAATaGTGGCTGCTGGTAATGTGTCCCAGCTACGTTCTACCCGAGGCA +
Preference number: 1 (lower is better)
Translates to: ATSRLEVQGKREAGE*WLLVMCPSYVLPEA
Trigger: TGCCTCGGGTAGAACGTAGCTGGGACACATTACCAGCAGCCATCATTCTCCTGCTTCTCTTTTGCCCTGGACCTCCAGCCTGGAAGTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 90 bp GATGACAAATCCTTGCTGGTAACCCAGCGCCGAGGTCCCAGGGTCTaGCTGGAACTGGATGGTGACATCGGCCATGGAGGTAAAGAGCTT +
Preference number: 1 (lower is better)
Translates to: DDKSLLVTQRRGPRV*LELDGDIGHGGKEL
Trigger: AAGCTCTTTACCTCCATGGCCGATGTCACCATCCAGTTCCAGTCAGACCCTGGGACCTCGGCGCTGGGTTACCAGCAAGGATTTGTCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 90 bp ACTACCAAGAGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTaGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAG +
Preference number: 1 (lower is better)
Translates to: TTKRSQLRTILASGS*PCEGHPAVKSALLE
Trigger: CTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 90 bp CGATCATGGCAGGTGAGAATGGCACTCCCCGTCAGCACAAAACCCTaGTCACAGACATATTGCACAGTTGCTCCCACGGGAAACTTGGGG +
Preference number: 1 (lower is better)
Translates to: RSWQVRMALPVSTKP*SQTYCTVAPTGNLG
Trigger: CCCCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTCTGTGACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTGCCATGATCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 90 bp TTGGACATCTGCTCCTCTCCAGAATGTAGCTGCCCTCTCCTGGCATaGCATAACACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCA +
Preference number: 1 (lower is better)
Translates to: LDICSSPECSCPLLA*HNTVAGRGNMVSGS
Trigger: TGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGCAGATGTCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 90 bp ATCATCACCTCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTaGGCCTTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGT +
Preference number: 1 (lower is better)
Translates to: IITSQDRAEGLTVQF*AFREGLETSLRGWC
Trigger: ACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 90 bp GAGATCCAGTCTCATAAGTTGGATTGTCAAATGCTGACTCTACCGTaGTGCGGTTATAGGGGCGAGGATGAGTTCGGGGAAGTTGCAGGG +
Preference number: 1 (lower is better)
Translates to: EIQSHKLDCQMLTLP*CGYRGEDEFGEVAG
Trigger: CCCTGCAACTTCCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 90 bp ACCCCATATAATACATCATATGTACAAAGTGGCCTCGGTCCGGACTaGGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGT +
Preference number: 1 (lower is better)
Translates to: TPYNTSYVQSGLGPD*DCSWGFLTSATFLG
Trigger: ACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGATGTATTATATGGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 90 bp TGCAAAGGAAAGAGATCCAGTCTCATAAGTTGGATTGTCAAATGCTaGCTCTACCGTGATGCGGTTATAGGGGCGAGGATGAGTTCGGGG +
Preference number: 1 (lower is better)
Translates to: CKGKRSSLISWIVKC*LYRDAVIGARMSSG
Trigger: CCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGATCTCTTTCCTTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp TGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCAGGCGGGGAAGGGGTTaGTGGTGTCTCTTCCCAGGC +
Preference number: 2 (lower is better)
Translates to: WPLVAGPVRGTLLSSQLSRRGRG*WCLFPG
Trigger: GCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCT...GGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp TACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGGGTGGGTCACTCCAATaGGAGGGGTGTCCAGGCACG +
Preference number: 2 (lower is better)
Translates to: YPRQMPLNPKKGPKWAQRGGSLQ*EGCPGT
Trigger: CGTGCCTGGACACCCCTCGCATTGGAGTGACCCACC...CCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CAA 90 bp CTCCTCAGAGTAGAGGGATGCCGGAGAGCCGTAGGGTGTCCTGCTTaGGTGTGGAGCGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGC +
Preference number: 2 (lower is better)
Translates to: LLRVEGCRRAVGCPA*VWSVSIHPVGPSLS
Trigger: GCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCATCCCTCTACTCTGAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp CTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATCCTGCGATGCAGGACTaGGTGTGCATCCCCAGGCTG +
Preference number: 2 (lower is better)
Translates to: LWALQAGKGLVVSLPRQYPAMQD*VCIPRL
Trigger: CAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGG...ATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp GCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGTGCCAAGACCTGCGATGCAGGACTaGGTGTGCATCCCCAGGCTG +
Preference number: 2 (lower is better)
Translates to: ADAPESKEGPEVGTAVPRPAMQD*VCIPRL
Trigger: CAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGG...TCTTGGCACCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCTTGGCCTCTGGTAGCTaGCCCTGTGAGGGGCACCCT +
Preference number: 2 (lower is better)
Translates to: REGLETSLRGWCWHARTTLASGS*PCEGHP
Trigger: AGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAA...GGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp TACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGCTGAGGGGCTGGTGTTaGCACGCCAGGACTACCAAG +
Preference number: 2 (lower is better)
Translates to: YPRQMPLNPKKGPKWAQRLRGWC*HARTTK
Trigger: CTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAG...CCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CAA 90 bp GGGGCGCTGAGGCCATGGCACGGCTTGAATTGTTCCAAGAGACACTaGGGGGCCCTGTCACTCCACTTGGGACTGCCTGCTTGCCGATCA +
Preference number: 2 (lower is better)
Translates to: GALRPWHGLNCSKRH*GALSLHLGLPACRS
Trigger: TGATCGGCAAGCAGGCAGTCCCAAGTGGAGTGACAGGGCCCCCAAGTGTCTCTTGGAACAATTCAAGCCGTGCCATGGCCTCAGCGCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp GAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGATGAGGCGTCGGCTGTaGTCCACATCCCCTGGGTCA +
Preference number: 2 (lower is better)
Translates to: EGLETSLRGWCWHARTTKMRRRL*STSPGS
Trigger: TGACCCAGGGGATGTGGAGCACAGCCGACGCCTCAT...CTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp TGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATCGGGGAAGGGGTTGGTaGTGTCTCTTCCCAGGCAGT +
Preference number: 2 (lower is better)
Translates to: WPCEGHPAVKSALLESSHRGRGW*CLFPGS
Trigger: ACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCG...ATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp CTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCCGGGGAAGGGGTTGGTaGTGTCTCTTCCCAGGCAGT +
Preference number: 2 (lower is better)
Translates to: LLSSQLSWSPHMPGRMVARGRGW*CLFPGS
Trigger: ACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCG...GGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp CCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTTGAGAACTTGGCCTCTGGTAGCTaGCCCTGTGAGGGGCACCCT +
Preference number: 2 (lower is better)
Translates to: PEGLVLARQDYQEVTVENLASGS*PCEGHP
Trigger: AGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAA...GTTCTCAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp TGCCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTGGAGCGTGAGTATCCATCCAACCTCCCTGAGGGGCTaGTGTTGGCACGCCAGGACT +
Preference number: 2 (lower is better)
Translates to: CRRAVGCPALVWSVSIHPTSLRG*CWHART
Trigger: AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGT...TGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CAA 90 bp TCTGACTGGAACTGGATGGTGACATCGGCCATGGAGGTAAAGAGCTaGAAGTGGCCACGGGGCCCTGAGTATTGGCCCAGGACCCGGGCT +
Preference number: 2 (lower is better)
Translates to: SDWNWMVTSAMEVKS*KWPRGPEYWPRTRA
Trigger: AGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCCGATGTCACCATCCAGTTCCAGTCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp GTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGAAGAGTATGTACAGGAGGTaGGGGACAGCAGAGAGCCGG +
Preference number: 2 (lower is better)
Translates to: VAGRGNMVSGSEEGLVGKSMYRR*GTAESR
Trigger: CCGGCTCTCTGCTGTCCCTCACCTCCTGTACATACT...CTTCCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp CCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACAGTGGGGCCCAGCCTaGGCTTGGAATAGAGTCCCT +
Preference number: 2 (lower is better)
Translates to: PGRMVAMCNKCPSSVSLQQWGPA*AWNRVP
Trigger: AGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTG...TTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp TACGGCCGTTGTAGAACCCATCCAGAGAGGCAGCCCTACAGATGGGTGGTGGGTCAGTGGGGCCCAGCCTaGGCTTGGAATAGAGTCCCT +
Preference number: 2 (lower is better)
Translates to: YGRCRTHPERQPYRWVVGQWGPA*AWNRVP
Trigger: AGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTG...ACCCACCACCCATCTGTAGGGCTGCCTCTCTGGATGGGTTCTACAACGGCCGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp GAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGCACCAGCTCAGGCTGTaGTGGGTTCTTCCAGCCGTT +
Preference number: 2 (lower is better)
Translates to: EGLETSLRGWCWHARTTKHQLRL*WVLPAV
Trigger: AACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTG...CTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp TACGGCCGTTGTAGAACCCATCCAGAGAGGCAGCCCTACAGATGGGTGGTGGGTGTCCAGGCACGCATTTaGTGCTGGCCTGGCCCTTCA +
Preference number: 2 (lower is better)
Translates to: YGRCRTHPERQPYRWVVGVQARI*CWPGPS
Trigger: TGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGAC...ACCCACCACCCATCTGTAGGGCTGCCTCTCTGGATGGGTTCTACAACGGCCGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp CTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTTGTGCATCCCCAGGCTaGTCCCACCTAGATGGAAAC +
Preference number: 2 (lower is better)
Translates to: LVAGPVRGTLLSSQLSWSCASPG*SHLDGN
Trigger: GTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACA...ACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp AAACTTGGGGCTGGATATGAGGCGTCGGCTGTGCTCCACATCCCCTGGGTCATGAGTATGTACAGGAGGTaGGGGACAGCAGAGAGCCGG +
Preference number: 2 (lower is better)
Translates to: KLGAGYEASAVLHIPWVMSMYRR*GTAESR
Trigger: CCGGCTCTCTGCTGTCCCTCACCTCCTGTACATACT...CATGACCCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCCCAAGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCACTTGGGGCTGGATATaGGGCGTCGGCTGTGCTCCA +
Preference number: 2 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFTWGWI*GVGCAP
Trigger: TGGAGCACAGCCGACGCCTCATATCCAGCCCCAAGT...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTTGTGCATCCCCAGGCTaGTCCCACCTAGATGGAAAC +
Preference number: 2 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGCASPG*SHLDGN
Trigger: GTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACA...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp GCTCCTCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGTGACCACCGTGCCGTaGACCAGCTCAGGCTGTGAT +
Preference number: 2 (lower is better)
Translates to: APLQNVAALSWHAITQWQVTTVP*TSSGCD
Trigger: ATCACAGCCTGAGCTGGTGCACGGCACGGTGGTCAC...CTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp CTGGCATGCCATAACACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGACCTCCCTGAGGGGCTaGTGTTGGCACGCCAGGACT +
Preference number: 2 (lower is better)
Translates to: LACHNTVAGRGNMVSGSETSLRG*CWHART
Trigger: AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGT...CTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGTGTTATGGCATGCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CAA 90 bp AAACCCTGGTCACAGACATATTGCACAGTTGCTCCCACGGGAAACTaGGGGCTGGATATGAGGCGTCGGCTGTGCTCCACATCCCCTGGG +
Preference number: 2 (lower is better)
Translates to: KPWSQTYCTVAPTGN*GLDMRRRLCSTSPG
Trigger: CCCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTCTGTGACCAGGGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp TGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCAGAGAAGCAGGAGAATaGTGGCTGCTGGTAATGTGT +
Preference number: 2 (lower is better)
Translates to: WPLVAGPVRGTLLSSQLSREAGE*WLLVMC
Trigger: ACACATTACCAGCAGCCATCATTCTCCTGCTTCTCT...GGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp GAGCGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGTTGGGACTGCCTGCTTaGCGATCATGGCAGGTGAGA +
Preference number: 2 (lower is better)
Translates to: EREYPSSGAQPELGIESLLGLPA*RSWQVR
Trigger: TCTCACCTGCCATGATCGGCAAGCAGGCAGTCCCAA...CAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp TGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCGGGGAAGGGGTTGGTaGTGTCTCTTCCCAGGCAGT +
Preference number: 2 (lower is better)
Translates to: WGFLTSATFLGPWTSAPLRGRGW*CLFPGS
Trigger: ACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCG...GAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp ATGCCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTGGAGCGTGAGTATCCATCCTGCCAGGCAGGATGGTaGCCATGTGTAACAAGTGCC +
Preference number: 2 (lower is better)
Translates to: MPESRRVSCFGVEREYPSCQAGW*PCVTSA
Trigger: GGCACTTGTTACACATGGCCACCATCCTGCCTGGCA...GGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCCTTCTGCCACATTCCTaGGTCCTTGGACATCTGCTC +
Preference number: 2 (lower is better)
Translates to: REGLETSLRGWCWHARTTLLPHS*VLGHLL
Trigger: GAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAG...GGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp GGAGGCGGCAGGTGCCTTGGCAACATCCAGGCTACGGCCGTTGTAGAACCCATCCAAGATGTCACTCTCTaGCATGAAGGCAGGTCCTCA +
Preference number: 2 (lower is better)
Translates to: GGGRCLGNIQATAVVEPIQDVTL*HEGRSS
Trigger: TGAGGACCTGCCTTCATGCCAGAGAGTGACATCTTG...GATGGGTTCTACAACGGCCGTAGCCTGGATGTTGCCAAGGCACCTGCCGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp CCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGACCTCCTCAGTCAGCCTaGAACTTCCAGGCTGGAGGT +
Preference number: 2 (lower is better)
Translates to: PSSGAQPELGIESLNLLGPPQSA*NFQAGG
Trigger: ACCTCCAGCCTGGAAGTTGCAGGCTGACTGAGGAGG...TCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp TTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTGCCATGTGTAACAAGTaGCCCTCCTCAGTCAGCCTG +
Preference number: 2 (lower is better)
Translates to: FREGLETSLRGWCWHARTAMCNK*PSSVSL
Trigger: CAGGCTGACTGAGGAGGGGCACTTGTTACACATGGC...AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGAGCCGTAGGGTGTCCTaGTTTGGTGTGGAGCGTGAG +
Preference number: 2 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQSRRVS*FGVERE
Trigger: CTCACGCTCCACACCAAAGCAGGACACCCTACGGCT...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp CCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTTGAGAACGGGTCCTTGGACATCTaGTCCTCTCCAGAATGTAGC +
Preference number: 2 (lower is better)
Translates to: PEGLVLARQDYQEVTVENGSLDI*SSPECS
Trigger: GCTACATTCTGGAGAGGAGCAGATGTCCAAGGACCC...GTTCTCAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp ACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCGAAAATAGGTCACTGTaGGCATTGCAGGCGGGGAAG +
Preference number: 2 (lower is better)
Translates to: TCQAGWWPCVTSAPPQSAENRSL*ALQAGK
Trigger: CTTCCCCGCCTGCAATGCCCACAGTGACCTATTTTC...GGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCGCTCAGAGGAGGGACTaGTGGGGAAGGAGACATTTG +
Preference number: 2 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFAQRRD*WGRRHL
Trigger: CAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAGC...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp CCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCTGCCACATTCCTaGGTCCTTGGACATCTGCTC +
Preference number: 2 (lower is better)
Translates to: PGRMVAMCNKCPSSVSLQLLPHS*VLGHLL
Trigger: GAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAG...TTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCGTCCCAGGGTCTGACTaGAACTGGATGGTGACATCG +
Preference number: 2 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFVPGSD*NWMVTS
Trigger: CGATGTCACCATCCAGTTCCAGTCAGACCCTGGGAC...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGCCTACAGATGGGTGGTaGGTCACTCCAATGCGAGGG +
Preference number: 2 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQPTDGW*VTPMRG
Trigger: CCCTCGCATTGGAGTGACCCACCACCCATCTGTAGG...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CAA 90 bp AGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTaGGACATCTGCTCCTCTCCAGAATGTAGCTGCCCTCTCCTGGCA +
Preference number: 2 (lower is better)
Translates to: RLLLGVLDFCHIPGS*DICSSPECSCPLLA
Trigger: TGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp ACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTTGCCAAGAGGTCACAGTTaGGAACAATTTTGGCCTCTG +
Preference number: 2 (lower is better)
Translates to: TSLRGWCWHARTTKRSQLPRGHS*EQFWPL
Trigger: CAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGG...CAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp TCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGAAGGGCTCAGAGGAGGGACTaGTGGGGAAGGAGACATTTG +
Preference number: 2 (lower is better)
Translates to: SPECSCPLLACHNTVAGRAQRRD*WGRRHL
Trigger: CAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAGC...CCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp TCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGAAGGGGGGAACATGGTAAGTaGCTCAGAGGAGGGACTGGT +
Preference number: 2 (lower is better)
Translates to: SPECSCPLLACHNTVAGRGEHGK*LRGGTG
Trigger: ACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCC...CCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGGGGGAACATGGTAAGTaGCTCAGAGGAGGGACTGGT +
Preference number: 2 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQGEHGK*LRGGTG
Trigger: ACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCC...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp AGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAAAGTGGGCACAGCGGTaGCAAGAAAATAGGTCACTG +
Preference number: 2 (lower is better)
Translates to: SPHMPGRMVAMCNKCPSSKWAQR*QENRSL
Trigger: CAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTT...TGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCGACATATTGCACAGTTaGTCCCACGGGAAACTTGGG +
Preference number: 2 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFDILHS*SHGKLG
Trigger: CCCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTC...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp GCTCCTCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGACATGCCAGGCAGGATaGTGGCCATGTGTAACAAGT +
Preference number: 2 (lower is better)
Translates to: APLQNVAALSWHAITQWQTCQAG*WPCVTS
Trigger: ACTTGTTACACATGGCCACCATCCTGCCTGGCATGT...CTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp TACGGCCGTTGTAGAACCCATCCAGAGAGGCAGCCCTACAGATGGGTGGTGGGTCCTCAAAGAAGTGGATaGCAAATCCTTGCTGGTAAC +
Preference number: 2 (lower is better)
Translates to: YGRCRTHPERQPYRWVVGPQRSG*QILAGN
Trigger: GTTACCAGCAAGGATTTGTCATCCACTTCTTTGAGG...ACCCACCACCCATCTGTAGGGCTGCCTCTCTGGATGGGTTCTACAACGGCCGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp TCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGAAGGAAGTGGGCACAGCGGTaGCAAGAAAATAGGTCACTG +
Preference number: 2 (lower is better)
Translates to: SPECSCPLLACHNTVAGRKWAQR*QENRSL
Trigger: CAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTT...CCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp ACCAAGAGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGTGCCAGGCAGGATGGTaGCCATGTGTAACAAGTGCC +
Preference number: 2 (lower is better)
Translates to: TKRSQLRTILASGSWPCECQAGW*PCVTSA
Trigger: GGCACTTGTTACACATGGCCACCATCCTGCCTGGCA...CTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp CTGAGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACTGTCCTGCTTTGGTGTaGAGCGTGAGTATCCATCCA +
Preference number: 2 (lower is better)
Translates to: LRLLLGVLDFCHIPGSLDCPALV*SVSIHP
Trigger: TGGATGGATACTCACGCTCCACACCAAAGCAGGACA...GTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp AGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCCATGCCATAACACAGTaGCAGGAAGGGGGAACATGG +
Preference number: 2 (lower is better)
Translates to: RLLLGVLDFCHIPGSLDIHAITQ*QEGGTW
Trigger: CCATGTTCCCCCTTCCTGCCACTGTGTTATGGCATG...GATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp TACGGCCGTTGTAGAACCCATCCAGAGAGGCAGCCCTACAGATGGGTGGTGGGTGGAACCTCAAAGAAGTaGATGACAAATCCTTGCTGG +
Preference number: 2 (lower is better)
Translates to: YGRCRTHPERQPYRWVVGGTSKK*MTNPCW
Trigger: CCAGCAAGGATTTGTCATCCACTTCTTTGAGGTTCC...ACCCACCACCCATCTGTAGGGCTGCCTCTCTGGATGGGTTCTACAACGGCCGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp ACATATTGCACAGTTGCTCCCACGGGAAACTTGGGGCTGGATATGAGGCGTCGGAGAGAAGCAGGAGAATaGTGGCTGCTGGTAATGTGT +
Preference number: 2 (lower is better)
Translates to: TYCTVAPTGNLGLDMRRRREAGE*WLLVMC
Trigger: ACACATTACCAGCAGCCATCATTCTCCTGCTTCTCT...CCGACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGCAACTGTGCAATATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp AATCATCACCTCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTGAGCCTTGCCATGTGTAACAAGTaGCCCTCCTCAGTCAGCCTG +
Preference number: 2 (lower is better)
Translates to: NHHLPGQGRRLNCPILSLAMCNK*PSSVSL
Trigger: CAGGCTGACTGAGGAGGGGCACTTGTTACACATGGC...AAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp TGGCAGGTGAGAATGGCACTCCCCGTCAGCACAAAACCCTGGTCACAGACATATACATGCCAGGCAGGATaGTGGCCATGTGTAACAAGT +
Preference number: 2 (lower is better)
Translates to: WQVRMALPVSTKPWSQTYTCQAG*WPCVTS
Trigger: ACTTGTTACACATGGCCACCATCCTGCCTGGCATGT...ATATGTCTGTGACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp ACCAAGAGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGCAGCTTAGGTCCCACTaGCACATGAGAATACTGGAT +
Preference number: 2 (lower is better)
Translates to: TKRSQLRTILASGSWPCEQLRSH*HMRILD
Trigger: ATCCAGTATTCTCATGTGCCAGTGGGACCTAAGCTG...CTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp GAAACTTCATATTCTCTCGTCTCCTGCAAAGGAAAGAGATCCAGTCTCATAAGTGGTAGCACTGATAGGTaGCCACCGTGCCGTGCACCA +
Preference number: 2 (lower is better)
Translates to: ETSYSLVSCKGKRSSLISGSTDR*PPCRAP
Trigger: TGGTGCACGGCACGGTGGTCACCTATCAGTGCTACC...ACTTATGAGACTGGATCTCTTTCCTTTGCAGGAGACGAGAGAATATGAAGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR GCA 90 bp GGAGACATTTGTAACAGCCAGATAAACTTCAAGGAAGGGCTCTCCCTCCTCAGATGGTCACAGACATATTaGACAGTTGCTCCCACGGGA +
Preference number: 2 (lower is better)
Translates to: GDICNSQINFKEGLSLLRWSQTY*TVAPTG
Trigger: TCCCGTGGGAGCAACTGTGCAATATGTCTGTGACCA...TCTGAGGAGGGAGAGCCCTTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CCA 90 bp AATCATCACCTCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTGAGCCTTGTCAGCACAAAACCCTaGTCACAGACATATTGCACA +
Preference number: 2 (lower is better)
Translates to: NHHLPGQGRRLNCPILSLVSTKP*SQTYCT
Trigger: TGTGCAATATGTCTGTGACCAGGGTTTTGTGCTGAC...AAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR TCA 90 bp AGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGATTCTTATTAACTGTCCAATTCTaGGCCTTTAGAGAGGGACTA +
Preference number: 2 (lower is better)
Translates to: SGAQPELGIESLNLLGFLLTVQF*AFREGL
Trigger: TAGTCCCTCTCTAAAGGCTCAGAATTGGACAGTTAA...TAAGAATCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR GCA 72 bp CAGGTGAGCAGCGTCCAGGGCACTGGAGGCGGCAGGTaGCTTGGCAACATCCAGGCTACGGCCGTTGTAGAA +
Preference number: 3 (lower is better)
Translates to: QVSSVQGTGGGR*LGNIQATAVVE
Trigger: TTCTACAACGGCCGTAGCCTGGATGTTGCCAAGGCACCTGCCGCCTCCAGTGCCCTGGACGCTGCTCACCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 72 bp GAGCCCTGCCGCTGGCCTGCGATGCAGGACTGCGTGTaGATCCCCAGGCTGCTCCCACCTAGATGGAAACTT +
Preference number: 3 (lower is better)
Translates to: EPCRWPAMQDCV*IPRLLPPRWKL
Trigger: AAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 72 bp GGATGCCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTaGAGCGTGAGTATCCATCCAGTGGGGCCCAGCCTG +
Preference number: 3 (lower is better)
Translates to: GCRRAVGCPALV*SVSIHPVGPSL
Trigger: CAGGCTGGGCCCCACTGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCATCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 72 bp GGGCTGCGGGCACCATTCTCCGGGGCGCTGAGGCCATaGCACGGCTTGAATTGTTCCAAGAGACACTTGGGG +
Preference number: 3 (lower is better)
Translates to: GLRAPFSGALRP*HGLNCSKRHLG
Trigger: CCCCAAGTGTCTCTTGGAACAATTCAAGCCGTGCCATGGCCTCAGCGCCCCGGAGAATGGTGCCCGCAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp TGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGCGGGGAAGGGGTaGGTGGTGTCTCTTCCCAGG +
Preference number: 3 (lower is better)
Translates to: CEGHPAVKSALLESSHARQAGKG*VVSLPR
Trigger: CCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTG...CCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp GAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACTGTGGGCATaGCAGGCGGGGAAGGGGTTG +
Preference number: 3 (lower is better)
Translates to: EGLETSLRGWCWHARTTKRSLWA*QAGKGL
Trigger: CAACCCCTTCCCCGCCTGCAATGCCCACAGTGACCT...CTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 72 bp CACGGGGCCCTGAGTATTGGCCCAGGACCCGGGCTGTaGGGTCATCCCCATCGTAGAAGGTCAGTACATCCC +
Preference number: 3 (lower is better)
Translates to: HGALSIGPGPGL*GHPHRRRSVHP
Trigger: GGGATGTACTGACCTTCTACGATGGGGATGACCTCACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 72 bp CCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTaGAGTCCTCACATGCCAGGCAGGATGGTGGCCATG +
Preference number: 3 (lower is better)
Translates to: PVRGTLLSSQLS*SPHMPGRMVAM
Trigger: CATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 72 bp GTAAAGAGCTTGAAGTGGCCACGGGGCCCTGAGTATTaGCCCAGGACCCGGGCTGTGAGGTCATCCCCATCG +
Preference number: 3 (lower is better)
Translates to: VKSLKWPRGPEY*PRTRAVRSSPS
Trigger: CGATGGGGATGACCTCACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 72 bp GAACCCATCCAGAGAGGCAGCCCTACAGATGGGTGGTaGGTCACTCCAATGCGAGGGGTGTCCAGGCACGCA +
Preference number: 3 (lower is better)
Translates to: EPIQRGSPTDGW*VTPMRGVSRHA
Trigger: TGCGTGCCTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTGCCTCTCTGGATGGGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCCAGGCGGGGAAGGGGTaGGTGGTGTCTCTTCCCAGG +
Preference number: 3 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFQAGKG*VVSLPR
Trigger: CCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTG...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp CCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACCTGAGGGGCTGGTGTaGGCACGCCAGGACTACCAA +
Preference number: 3 (lower is better)
Translates to: PGRMVAMCNKCPSSVSLQPEGLV*ARQDYQ
Trigger: TTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGG...TTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 72 bp CATGGAGGTAAAGAGCTTGAAGTGGCCACGGGGCCCTaGGTATTGGCCCAGGACCCGGGCTGTGAGGTCATC +
Preference number: 3 (lower is better)
Translates to: HGGKELEVATGP*VLAQDPGCEVI
Trigger: GATGACCTCACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 72 bp TCCTTGCTGGTAACCCAGCGCCGAGGTCCCAGGGTCTaGCTGGAACTGGATGGTGACATCGGCCATGGAGGT +
Preference number: 3 (lower is better)
Translates to: SLLVTQRRGPRV*LELDGDIGHGG
Trigger: ACCTCCATGGCCGATGTCACCATCCAGTTCCAGTCAGACCCTGGGACCTCGGCGCTGGGTTACCAGCAAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 72 bp GCACAGTTGCTCCCACGGGAAACTTGGGGCTGGATATaGGGCGTCGGCTGTGCTCCACATCCCCTGGGTCAT +
Preference number: 3 (lower is better)
Translates to: AQLLPRETWGWI*GVGCAPHPLGH
Trigger: ATGACCCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGCAACTGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 72 bp GGTCACTCCAATGCGAGGGGTGTCCAGGCACGCATTTaGTGCTGGCCTGGCCCTTCAGCACATAACCAGGGG +
Preference number: 3 (lower is better)
Translates to: GHSNARGVQARI*CWPGPSAHNQG
Trigger: CCCCTGGTTATGTGCTGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACACCCCTCGCATTGGAGTGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 72 bp ATGGTGACATCGGCCATGGAGGTAAAGAGCTTGAAGTaGCCACGGGGCCCTGAGTATTGGCCCAGGACCCGG +
Preference number: 3 (lower is better)
Translates to: MVTSAMEVKSLK*PRGPEYWPRTR
Trigger: CCGGGTCCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCCGATGTCACCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 72 bp GTAGAACCCATCCAGAGAGGCAGCCCTACAGATGGGTaGTGGGTCACTCCAATGCGAGGGGTGTCCAGGCAC +
Preference number: 3 (lower is better)
Translates to: VEPIQRGSPTDG*WVTPMRGVSRH
Trigger: GTGCCTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTGCCTCTCTGGATGGGTTCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp TGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGGCGGGGAAGGGGTaGGTGGTGTCTCTTCCCAGG +
Preference number: 3 (lower is better)
Translates to: WGFLTSATFLGPWTSAPLQAGKG*VVSLPR
Trigger: CCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTG...GAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 72 bp ATCCCACCACCTGGTAACCAGGGTAGCACTGATAGGTaGCCACCGTGCCGTGCACCAGCTCAGGCTGTGATG +
Preference number: 3 (lower is better)
Translates to: IPPPGNQGSTDR*PPCRAPAQAVM
Trigger: CATCACAGCCTGAGCTGGTGCACGGCACGGTGGTCACCTATCAGTGCTACCCTGGTTACCAGGTGGTGGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 72 bp CAGAGTAGAGGGATGCCGGAGAGCCGTAGGGTGTCCTaGTTTGGTGTGGAGCGTGAGTATCCATCCAGTGGG +
Preference number: 3 (lower is better)
Translates to: QSRGMPESRRVS*FGVEREYPSSG
Trigger: CCCACTGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCATCCCTCTACTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR GCA 72 bp TTCAAGGAAGGGCTCTCCCTCCTCAGAGTAGAGGGATaGCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTGG +
Preference number: 3 (lower is better)
Translates to: FKEGLSLLRVEG*RRAVGCPALVW
Trigger: CCACACCAAAGCAGGACACCCTACGGCTCTCCGGCATCCCTCTACTCTGAGGAGGGAGAGCCCTTCCTTGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 72 bp ATGAGGCGTCGGCTGTGCTCCACATCCCCTGGGTCATaGCAAGATGTCACTCTCTGGCATGAAGGCAGGTCC +
Preference number: 3 (lower is better)
Translates to: MRRRLCSTSPGS*QDVTLWHEGRS
Trigger: GGACCTGCCTTCATGCCAGAGAGTGACATCTTGCCATGACCCAGGGGATGTGGAGCACAGCCGACGCCTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CCA 72 bp CGTTGTAGAACCCATCCAGAGAGGCAGCCCTACAGATaGGTGGTGGGTCACTCCAATGCGAGGGGTGTCCAG +
Preference number: 3 (lower is better)
Translates to: RCRTHPERQPYR*VVGHSNARGVQ
Trigger: CTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTGCCTCTCTGGATGGGTTCTACAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp CTGGCATGCCATAACACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGAGGTCACTGTGGGCATaGCAGGCGGGGAAGGGGTTG +
Preference number: 3 (lower is better)
Translates to: LACHNTVAGRGNMVSGSERSLWA*QAGKGL
Trigger: CAACCCCTTCCCCGCCTGCAATGCCCACAGTGACCT...CTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGTGTTATGGCATGCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp TACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGCAGTTGAGAACAATTTaGGCCTCTGGTAGCTGGCCC +
Preference number: 3 (lower is better)
Translates to: YPRQMPLNPKKGPKWAQRQLRTI*ASGSWP
Trigger: GGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTG...CCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCTGCTCCTGGGGGTTCTaGACTTCTGCCACATTCCTG +
Preference number: 3 (lower is better)
Translates to: REGLETSLRGWCWHARTTCSWGF*TSATFL
Trigger: CAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCA...GGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp CCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGAGCCCTGTCACTCCACTaGGGACTGCCTGCTTGCCGA +
Preference number: 3 (lower is better)
Translates to: PSSGAQPELGIESLNLLGALSLH*GLPACR
Trigger: TCGGCAAGCAGGCAGTCCCAAGTGGAGTGACAGGGC...TCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCATGGAGGTAAAGAGCTaGAAGTGGCCACGGGGCCCT +
Preference number: 3 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFMEVKS*KWPRGP
Trigger: AGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCAT...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp GAGCGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGCTGGTCACAGACATATaGCACAGTTGCTCCCACGGG +
Preference number: 3 (lower is better)
Translates to: EREYPSSGAQPELGIESLLVTDI*HSCSHG
Trigger: CCCGTGGGAGCAACTGTGCAATATGTCTGTGACCAG...CAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 72 bp GCCTCGGTCCGGACTGAGATTGCTCCTGGGGGTTCTTaGCTTCTGCCACATTCCTGGGTCCTTGGACATCTG +
Preference number: 3 (lower is better)
Translates to: ASVRTEIAPGGS*LLPHSWVLGHL
Trigger: CAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAGTCCGGACCGAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 72 bp TCCACTTGGGACTGCCTGCTTGCCGATCATGGCAGGTaGGAATGGCACTCCCCGTCAGCACAAAACCCTGGT +
Preference number: 3 (lower is better)
Translates to: STWDCLLADHGR*EWHSPSAQNPG
Trigger: ACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTGCCATGATCGGCAAGCAGGCAGTCCCAAGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 72 bp CCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATaGCAGGCAGGATGGTGGCCATGTGTAACAAGTGCC +
Preference number: 3 (lower is better)
Translates to: PCCQVSSPGVLT*QAGWWPCVTSA
Trigger: GGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 72 bp GTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATaGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCA +
Preference number: 3 (lower is better)
Translates to: VSSPGVLTCQAG*WPCVTSAPPQS
Trigger: TGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp CCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAAAGGCCATGGCACGGCTaGAATTGTTCCAAGAGACAC +
Preference number: 3 (lower is better)
Translates to: PGRMVAMCNKCPSSVSLQRPWHG*NCSKRH
Trigger: GTGTCTCTTGGAACAATTCAAGCCGTGCCATGGCCT...TTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 72 bp GGGTCCTTGGACATCTGCTCCTCTCCAGAATGTAGCTaGCCTCTCCTGGCATGCCATAACACAGTGGCAGGA +
Preference number: 3 (lower is better)
Translates to: GSLDICSSPECS*PLLACHNTVAG
Trigger: TCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGCAGATGTCCAAGGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 72 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTaGCACGCCAGGACTACCAAGAGGTCACAGTTGAGA +
Preference number: 3 (lower is better)
Translates to: REGLETSLRGWC*HARTTKRSQLR
Trigger: TCTCAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGGTAGGGTGTCCTGCTTaGGTGTGGAGCGTGAGTATC +
Preference number: 3 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQVGCPA*VWSVSI
Trigger: GATACTCACGCTCCACACCAAAGCAGGACACCCTAC...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 72 bp GACATGTGTCGTTGCGGGGAACCTCAAAGAAGTGGATaGCAAATCCTTGCTGGTAACCCAGCGCCGAGGTCC +
Preference number: 3 (lower is better)
Translates to: DMCRCGEPQRSG*QILAGNPAPRS
Trigger: GGACCTCGGCGCTGGGTTACCAGCAAGGATTTGTCATCCACTTCTTTGAGGTTCCCCGCAACGACACATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR GCA 72 bp TGCTCCTCTCCAGAATGTAGCTGCCCTCTCCTGGCATaGCATAACACAGTGGCAGGAAGGGGGAACATGGTA +
Preference number: 3 (lower is better)
Translates to: CSSPECSCPLLA*HNTVAGRGNMV
Trigger: TACCATGTTCCCCCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR GCA 72 bp TCCGGACTGAGATTGCTCCTGGGGGTTCTTGACTTCTaGCACATTCCTGGGTCCTTGGACATCTGCTCCTCT +
Preference number: 3 (lower is better)
Translates to: SGLRLLLGVLDF*HIPGSLDICSS
Trigger: AGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAGTCCGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 72 bp AAGTGCCCCTCCTCAGTCAGCCTGCAACTTCCAGGCTaGAGGTCCAGGGCAAAAGAGAAGCAGGAGAATGAT +
Preference number: 3 (lower is better)
Translates to: KCPSSVSLQLPG*RSRAKEKQEND
Trigger: ATCATTCTCCTGCTTCTCTTTTGCCCTGGACCTCCAGCCTGGAAGTTGCAGGCTGACTGAGGAGGGGCACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 72 bp AGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTaGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCT +
Preference number: 3 (lower is better)
Translates to: RSQLRTILASGS*PCEGHPAVKSA
Trigger: AGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CCA 72 bp CAGGTGAGAATGGCACTCCCCGTCAGCACAAAACCCTaGTCACAGACATATTGCACAGTTGCTCCCACGGGA +
Preference number: 3 (lower is better)
Translates to: QVRMALPVSTKP*SQTYCTVAPTG
Trigger: TCCCGTGGGAGCAACTGTGCAATATGTCTGTGACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp TACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGAACAGAAATAAAAGATaGTTCTCTGGCTGGAGCCCA +
Preference number: 3 (lower is better)
Translates to: YPRQMPLNPKKGPKWAQRNRNKR*FSGWSP
Trigger: TGGGCTCCAGCCAGAGAACAATCTTTTATTTCTGTT...CCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR GCA 72 bp CAGCACAAAACCCTGGTCACAGACATATTGCACAGTTaGTCCCACGGGAAACTTGGGGCTGGATATGAGGCG +
Preference number: 3 (lower is better)
Translates to: QHKTLVTDILHS*SHGKLGAGYEA
Trigger: CGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTCTGTGACCAGGGTTTTGTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp GGAGACATTTGTAACAGCCAGATAAACTTCAAGGAAGGGCTCTCCCTCCTCAGAGCTCCCACGGGAAACTaGGGGCTGGATATGAGGCGT +
Preference number: 3 (lower is better)
Translates to: GDICNSQINFKEGLSLLRAPTGN*GLDMRR
Trigger: ACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGC...TCTGAGGAGGGAGAGCCCTTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 72 bp AGGCTGGAGGTCCAGGGCAAAAGAGAAGCAGGAGAATaGTGGCTGCTGGTAATGTGTCCCAGCTACGTTCTA +
Preference number: 3 (lower is better)
Translates to: RLEVQGKREAGE*WLLVMCPSYVL
Trigger: TAGAACGTAGCTGGGACACATTACCAGCAGCCATCATTCTCCTGCTTCTCTTTTGCCCTGGACCTCCAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 72 bp TCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTaGGCCTTTAGAGAGGGACTAGAAACCTCCCTGAGG +
Preference number: 3 (lower is better)
Translates to: SQDRAEGLTVQF*AFREGLETSLR
Trigger: CCTCAGGGAGGTTTCTAGTCCCTCTCTAAAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp ATAATACATCATATGTACAAAGTGGCCTCGGTCCGGACTGAGATTGCTCCTGGGGTAGGGTGTCCTGCTTaGGTGTGGAGCGTGAGTATC +
Preference number: 3 (lower is better)
Translates to: IIHHMYKVASVRTEIAPGVGCPA*VWSVSI
Trigger: GATACTCACGCTCCACACCAAAGCAGGACACCCTAC...CCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGATGTATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp AGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCACCAAGAGGTCACAGTaGAGAACAATTTTGGCCTCT +
Preference number: 3 (lower is better)
Translates to: RLLLGVLDFCHIPGSLDITKRSQ*RTILAS
Trigger: AGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT...GATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp TGGCAGGTGAGAATGGCACTCCCCGTCAGCACAAAACCCTGGTCACAGACATATACCAAGAGGTCACAGTaGAGAACAATTTTGGCCTCT +
Preference number: 3 (lower is better)
Translates to: WQVRMALPVSTKPWSQTYTKRSQ*RTILAS
Trigger: AGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT...ATATGTCTGTGACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp AATCATCACCTCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTGAGCCTTAGACATATTGCACAGTaGCTCCCACGGGAAACTTGG +
Preference number: 3 (lower is better)
Translates to: NHHLPGQGRRLNCPILSLRHIAQ*LPRETW
Trigger: CCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTCT...AAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp AATCATCACCTCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTGAGCCTTATGGCACGGCTTGAATaGTTCCAAGAGACACTTGGG +
Preference number: 3 (lower is better)
Translates to: NHHLPGQGRRLNCPILSLMARLE*FQETLG
Trigger: CCCAAGTGTCTCTTGGAACAATTCAAGCCGTGCCAT...AAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR TCA 72 bp TCTCATAAGTTGGATTGTCAAATGCTGACTCTACCGTaGTGCGGTTATAGGGGCGAGGATGAGTTCGGGGAA +
Preference number: 3 (lower is better)
Translates to: SHKLDCQMLTLP*CGYRGEDEFGE
Trigger: TTCCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR-3UTR CAA 90 bp ATAATACATCATATGTACAAAGTGGCCTCGGTCCGGACTGAGATTGCTCCTGGGACCAAGAGGTCACAGTaGAGAACAATTTTGGCCTCT +
Preference number: 3 (lower is better)
Translates to: IIHHMYKVASVRTEIAPGTKRSQ*RTILAS
Trigger: AGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT...CCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGATGTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR TCA 72 bp AAGAGATCCAGTCTCATAAGTTGGATTGTCAAATGCTaGCTCTACCGTGATGCGGTTATAGGGGCGAGGATG +
Preference number: 3 (lower is better)
Translates to: KRSSLISWIVKC*LYRDAVIGARM
Trigger: CATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGATCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CCCTGCCGCTGGCCTGCGATGCAGGACTGCGTGTGCATCCCCAGGCTGCTCCCAGGGCTGCGGATGACCTaGCCCCTCAGCAGGAACGAC +
Preference number: 4 (lower is better)
Translates to: PCRWPAMQDCVCIPRLLPGLRMT*PLSRND
Trigger: GTCGTTCCTGCTGAGGGGCCAGGTCATCCGCAGCCC...TGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTGGGTGGGGCTGCGGATaGCCTGGCCCCTCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGGWGCG*PGPSAG
Trigger: TCCTGCTGAGGGGCCAGGTCATCCGCAGCCCCACCC...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCGGGTGGGGCTGCGGATaGCCTGGCCCCTCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: REGLETSLRGWCWHARTTGWGCG*PGPSAG
Trigger: TCCTGCTGAGGGGCCAGGTCATCCGCAGCCCCACCC...GGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CCCTGCCGCTGGCCTGCGATGCAGGACTGCGTGTGCATCCCCAGGCTGCTCCCATCTGTCTCATTCCACTaGGGGTCGTGGAGGTCGACG +
Preference number: 4 (lower is better)
Translates to: PCRWPAMQDCVCIPRLLPSVSFH*GSWRST
Trigger: CGTCGACCTCCACGACCCCCAGTGGAATGAGACAGA...TGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GTCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCACAGCGTCCAGGGCACTaGAGGCGGCAGGTGCCTTGG +
Preference number: 4 (lower is better)
Translates to: VTVGIAGGEGVGGVSSQAQRPGH*RRQVPW
Trigger: CCAAGGCACCTGCCGCCTCCAGTGCCCTGGACGCTG...TGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp GTCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCATCTGAGGAGAGTCCGTaGGCCAGGAGCGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: VTVGIAGGEGVGGVSSQASEESP*ARSASS
Trigger: GCTGCTGGCGCTCCTGGCTCACGGACTCTCCTCAGA...TGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTGCCAACATCAGAGGGTaGGCTGGGGGCCGTGGGGGA +
Preference number: 4 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGANIRG*AGGRGG
Trigger: TCCCCCACGGCCCCCAGCTCACCCTCTGATGTTGGC...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp CCCTGCCGCTGGCCTGCGATGCAGGACTGCGTGTGCATCCCCAGGCTGCTCCCACTGGGTGGAGACTGGTaGCAGTCACATCTCCATACG +
Preference number: 4 (lower is better)
Translates to: PCRWPAMQDCVCIPRLLPLGGDW*QSHLHT
Trigger: CGTATGGAGATGTGACTGTCACCAGTCTCCACCCAG...TGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp TGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCCTCAGGTGTAGGGGCTaGGGTCAGCTCCCCATCCGT +
Preference number: 4 (lower is better)
Translates to: WPLVAGPVRGTLLSSQLSLRCRG*GQLPIR
Trigger: ACGGATGGGGAGCTGACCGCAGCCCCTACACCTGAG...GGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GTCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCACTCAGGGCTGCTTGGTaGGTGGGGCTGCGGATGACC +
Preference number: 4 (lower is better)
Translates to: VTVGIAGGEGVGGVSSQALRAAW*VGLRMT
Trigger: GGTCATCCGCAGCCCCACCCACCAAGCAGCCCTGAG...TGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp TGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCGTGGGCGCTGCCTCCTaGGTGGAGACTGGTGACAGT +
Preference number: 4 (lower is better)
Translates to: WPLVAGPVRGTLLSSQLSVGAAS*VETGDS
Trigger: ACTGTCACCAGTCTCCACCCAGGAGGCAGCGCCCAC...GGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTCGGGGCCCTGAGTATTaGCCCAGGACCCGGGCTGTG +
Preference number: 4 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGRGPEY*PRTRAV
Trigger: CACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCG...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCGTGGACGCCTCGGTCTaGCTGCTCAGGTGTAGGGGC +
Preference number: 4 (lower is better)
Translates to: REGLETSLRGWCWHARTTVDASV*LLRCRG
Trigger: GCCCCTACACCTGAGCAGTCAGACCGAGGCGTCCAC...GGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp CCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTTGAGAACGCCAACATCAGAGGGTaGGCTGGGGGCCGTGGGGGA +
Preference number: 4 (lower is better)
Translates to: PEGLVLARQDYQEVTVENANIRG*AGGRGG
Trigger: TCCCCCACGGCCCCCAGCTCACCCTCTGATGTTGGC...GTTCTCAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp AGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACGGGTGGGGCTGCGGATaGCCTGGCCCCTCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: SQLSWSPHMPGRMVAMCNGWGCG*PGPSAG
Trigger: TCCTGCTGAGGGGCCAGGTCATCCGCAGCCCCACCC...GTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GTCCCAGCTACGTTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGCGCCTGCAGAGTCTGTaGTCTCCCCGCTGCACACGG +
Preference number: 4 (lower is better)
Translates to: VPATFYPRQMPLNPKKGPRLQSL*SPRCTR
Trigger: CCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCG...CGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp TACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGCCAGGACCCGGGCTGTaGGGTCATCCCCATCGTAGA +
Preference number: 4 (lower is better)
Translates to: YPRQMPLNPKKGPKWAQRPGPGL*GHPHRR
Trigger: TCTACGATGGGGATGACCTCACAGCCCGGGTCCTGG...CCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp TGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCACTTGGGGCTGGATATaGGGCGTCGGCTGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: WPLVAGPVRGTLLSSQLSTWGWI*GVGCAP
Trigger: TGGAGCACAGCCGACGCCTCATATCCAGCCCCAAGT...GGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTATGGCAGCAGCCAGGTaGGCAGCGTCCAGGGCACTG +
Preference number: 4 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGMAAAR*AASRAL
Trigger: CAGTGCCCTGGACGCTGCTCACCTGGCTGCTGCCAT...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp ATGCCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTGGAGCGTGAGTATCCATCCCGGCTGGAAGGGCAGTaGAGGCTGCGGCGCTTCCTC +
Preference number: 4 (lower is better)
Translates to: MPESRRVSCFGVEREYPSRLEGQ*RLRRFL
Trigger: GAGGAAGCGCCGCAGCCTGCACTGCCCTTCCAGCCG...GGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATCATAGCGCAGGGCCATaGCTGCAGCTGCCCCACTGC +
Preference number: 4 (lower is better)
Translates to: WPCEGHPAVKSALLESSHHSAGP*LQLPHC
Trigger: GCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATG...ATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCGTGAGCTGGGGGCCGTaGGGGAATCCAGAGAGCCCT +
Preference number: 4 (lower is better)
Translates to: LLSSQLSWSPHMPGRMVAVSWGP*GNPESP
Trigger: AGGGCTCTCTGGATTCCCCCACGGCCCCCAGCTCAC...GGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GTCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGGTAGCGGGAGGCTCTaGAACCTCAGGGCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: VTVGIAGGEGVGGVSSQAGSGRL*NLRAAW
Trigger: CCAAGCAGCCCTGAGGTTCCAGAGCCTCCCGCTACC...TGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp TGCCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTGGAGCGTGAGTATCCATCCACGGGGCCCTGAGTATTaGCCCAGGACCCGGGCTGTG +
Preference number: 4 (lower is better)
Translates to: CRRAVGCPALVWSVSIHPRGPEY*PRTRAV
Trigger: CACAGCCCGGGTCCTGGGCCAATACTCAGGGCCCCG...TGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp TCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGGGTAGCACTGATAGGTaGCCACCGTGCCGTGCACCA +
Preference number: 4 (lower is better)
Translates to: SLWALQAGKGLVVSLPRQGSTDR*PPCRAP
Trigger: TGGTGCACGGCACGGTGGTCACCTATCAGTGCTACC...CTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp GAGCGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGATGGCAGCAGCCAGGTaGGCAGCGTCCAGGGCACTG +
Preference number: 4 (lower is better)
Translates to: EREYPSSGAQPELGIESLMAAAR*AASRAL
Trigger: CAGTGCCCTGGACGCTGCTCACCTGGCTGCTGCCAT...CAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp ACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGCTCAGGTGTAGGGGCTaGGGTCAGCTCCCCATCCGT +
Preference number: 4 (lower is better)
Translates to: TVAGRGNMVSGSEEGLVGLRCRG*GQLPIR
Trigger: ACGGATGGGGAGCTGACCGCAGCCCCTACACCTGAG...CCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGACGCCTCGGTCTGACTaGTCAGGTGTAGGGGCTGCG +
Preference number: 4 (lower is better)
Translates to: CEGHPAVKSALLESSHARTPRSD*SGVGAA
Trigger: CGCAGCCCCTACACCTGAGCAGTCAGACCGAGGCGT...CCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp ACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGTGGGGCTGGGTGGGTaGTGCAGCCACGGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: TILASGSWPCEGHPAVKSVGLGG*CSHGWS
Trigger: ACTCCAGCCGTGGCTGCAGCACCCACCCAGCCCCAC...TGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp ACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCCATAGCGCAGGGCCATaGCTGCAGCTGCCCCACTGC +
Preference number: 4 (lower is better)
Translates to: TCQAGWWPCVTSAPPQSAHSAGP*LQLPHC
Trigger: GCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATG...GGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp TGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGGTGGGTCACTCCAATaGGAGGGGTGTCCAGGCACG +
Preference number: 4 (lower is better)
Translates to: WPCEGHPAVKSALLESSHGGSLQ*EGCPGT
Trigger: CGTGCCTGGACACCCCTCGCATTGGAGTGACCCACC...ATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTTGAGAACGTGAGCTGGGGGCCGTaGGGGAATCCAGAGAGCCCT +
Preference number: 4 (lower is better)
Translates to: PEGLVLARQDYQEVTVENVSWGP*GNPESP
Trigger: AGGGCTCTCTGGATTCCCCCACGGCCCCCAGCTCAC...GTTCTCAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTTGAACCTCAGGGCTGCTTaGTGGGTGGGGCTGCGGATG +
Preference number: 4 (lower is better)
Translates to: TSLRGWCWHARTTKRSQLNLRAA*WVGLRM
Trigger: CATCCGCAGCCCCACCCACCAAGCAGCCCTGAGGTT...CAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGGTGGCACAATGGAAGTaGGCGCTGCCTCCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: EGLETSLRGWCWHARTTKVAQWK*ALPPGW
Trigger: CCACCCAGGAGGCAGCGCCCACTTCCATTGTGCCAC...CTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTGTGGCACAATGGAAGTaGGCGCTGCCTCCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGVAQWK*ALPPGW
Trigger: CCACCCAGGAGGCAGCGCCCACTTCCATTGTGCCAC...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CAA 72 bp GTAGAGGGATGCCGGAGAGCCGTAGGGTGTCCTGCTTaGGTGTGGAGCGTGAGTATCCATCCAGTGGGGCCC +
Preference number: 4 (lower is better)
Translates to: VEGCRRAVGCPA*VWSVSIHPVGP
Trigger: GGGCCCCACTGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCATCCCTCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp AGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACTCTGAGGAGAGTCCGTaGGCCAGGAGCGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: SQLSWSPHMPGRMVAMCNSEESP*ARSASS
Trigger: GCTGCTGGCGCTCCTGGCTCACGGACTCTCCTCAGA...GTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp TGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCAGTAAAGTGTGTAGGTaGGTCCGGCTGGAAGGGCAG +
Preference number: 4 (lower is better)
Translates to: WPLVAGPVRGTLLSSQLSSKVCR*VRLEGQ
Trigger: CTGCCCTTCCAGCCGGACTCACCTACACACTTTACT...GGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp TCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGAAGGGCCAACATCAGAGGGTaGGCTGGGGGCCGTGGGGGA +
Preference number: 4 (lower is better)
Translates to: SPECSCPLLACHNTVAGRANIRG*AGGRGG
Trigger: TCCCCCACGGCCCCCAGCTCACCCTCTGATGTTGGC...CCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGAAGAGTGTCTGCCAGAGCTaGGCAGGCCCTCAATGGGCA +
Preference number: 4 (lower is better)
Translates to: VAGRGNMVSGSEEGLVGKSVCQS*AGPQWA
Trigger: TGCCCATTGAGGGCCTGCTCAGCTCTGGCAGACACT...CTTCCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp TCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGCTCGGATGTCCAGCATaGTGCGCTTGTCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: SLWALQAGKGLVVSLPRQLGCPA*CACPPP
Trigger: TGGAGGAGGACAAGCGCATCATGCTGGACATCCGAG...CTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp CTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTCCAGGCACGCATTTaGTGCTGGCCTGGCCCTTCA +
Preference number: 4 (lower is better)
Translates to: LWALQAGKGLVVSLPRQYVQARI*CWPGPS
Trigger: TGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGAC...ATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp CCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGAGTGGGGCTGGGTGGGTaGTGCAGCCACGGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: PSSGAQPELGIESLNLLGVGLGG*CSHGWS
Trigger: ACTCCAGCCGTGGCTGCAGCACCCACCCAGCCCCAC...TCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp ACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCGAGCAGTGTGGGCACTaGCATACTCGGCCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: TCQAGWWPCVTSAPPQSAEQCGH*HTRPWR
Trigger: CCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCTC...GGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGAATGGAAGTGGGCGCTaGCTCCTGGGTGGAGACTGG +
Preference number: 4 (lower is better)
Translates to: CEGHPAVKSALLESSHARNGSGR*LLGGDW
Trigger: CCAGTCTCCACCCAGGAGGCAGCGCCCACTTCCATT...CCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp TACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGAGCCAGGAGAGACAATaGGGCCAGTGGTGGCATTCC +
Preference number: 4 (lower is better)
Translates to: YPRQMPLNPKKGPKWAQRSQERQ*GQWWHS
Trigger: GGAATGCCACCACTGGCCGCATTGTCTCTCCTGGCT...CCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp CTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTAGCCAGGAGAGACAATaGGGCCAGTGGTGGCATTCC +
Preference number: 4 (lower is better)
Translates to: LVAGPVRGTLLSSQLSWSSQERQ*GQWWHS
Trigger: GGAATGCCACCACTGGCCGCATTGTCTCTCCTGGCT...ACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTGGCCATGCCTGCAGCTaGCCCACTGCTGTCAGTACT +
Preference number: 4 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGGHACS*PTAVST
Trigger: AGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCC...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp CTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCACAGGGTAGGACGGTaGACTGCTGCTGAAGTTGCC +
Preference number: 4 (lower is better)
Translates to: LVAGPVRGTLLSSQLSWSHRVGR*TAAEVA
Trigger: GGCAACTTCAGCAGCAGTGCACCGTCCTACCCTGTG...ACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGAGAGAGCACCACGCCTaGAGAGTCTGTGATCTCCCC +
Preference number: 4 (lower is better)
Translates to: YPRQMPLNPKKGPKWAQRREHHA*RVCDLP
Trigger: GGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCT...CCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCGTGACCACCGTGCCGTaGACCAGCTCAGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: REGLETSLRGWCWHARTTVTTVP*TSSGCD
Trigger: ATCACAGCCTGAGCTGGTGCACGGCACGGTGGTCAC...GGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp ACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGACTGGGTCTGTCCTCTaGGAGCAGTGTGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: TVAGRGNMVSGSEEGLVGTGSVL*EQCGHC
Trigger: GCAGTGCCCACACTGCTCCCAGAGGACAGACCCAGT...CCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GTCCCAGCTACGTTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGACTGGGTCTGTCCTCTaGGAGCAGTGTGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: VPATFYPRQMPLNPKKGPTGSVL*EQCGHC
Trigger: GCAGTGCCCACACTGCTCCCAGAGGACAGACCCAGT...CGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTGCTACAGGGGCCTGGTaGCTGAACTGTGGTGACAGT +
Preference number: 4 (lower is better)
Translates to: LVAGPVRGTLLSSQLSWSATGAW*LNCGDS
Trigger: ACTGTCACCACAGTTCAGCCACCAGGCCCCTGTAGC...ACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTTGCCAGCTACAGGGGCCTaGTGGCTGAACTGTGGTGAC +
Preference number: 4 (lower is better)
Translates to: TSLRGWCWHARTTKRSQLPATGA*WLNCGD
Trigger: GTCACCACAGTTCAGCCACCAGGCCCCTGTAGCTGG...CAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp AGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACGTGAGCTGGGGGCCGTaGGGGAATCCAGAGAGCCCT +
Preference number: 4 (lower is better)
Translates to: SQLSWSPHMPGRMVAMCNVSWGP*GNPESP
Trigger: AGGGCTCTCTGGATTCCCCCACGGCCCCCAGCTCAC...GTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp AGGGCCCGAAGTGGGCACAGCGGTGCCAAGAAAATAGGTCACTGTGGGCATTGCCATCAGAGGGTGAGCTaGGGGCCGTGGGGGAATCCA +
Preference number: 4 (lower is better)
Translates to: RARSGHSGAKKIGHCGHCHQRVS*GPWGNP
Trigger: TGGATTCCCCCACGGCCCCCAGCTCACCCTCTGATG...GCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GAGCGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTCAGGGCTGCTTaGTGGGTGGGGCTGCGGATG +
Preference number: 4 (lower is better)
Translates to: EREYPSSGAQPELGIESLNLRAA*WVGLRM
Trigger: CATCCGCAGCCCCACCCACCAAGCAGCCCTGAGGTT...CAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAAGGTAGCGGGAGGCTCTaGAACCTCAGGGCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: PGRMVAMCNKCPSSVSLQGSGRL*NLRAAW
Trigger: CCAAGCAGCCCTGAGGTTCCAGAGCCTCCCGCTACC...TTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ATGGTGACATCGGCCATGGAGGTAAAGAGCTTGAAGTGGCCACGGGGCCCTGAGGGTAGCGGGAGGCTCTaGAACCTCAGGGCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: MVTSAMEVKSLKWPRGPEGSGRL*NLRAAW
Trigger: CCAAGCAGCCCTGAGGTTCCAGAGCCTCCCGCTACC...CTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCCGATGTCACCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTTCTGTCTCATTCCACTaGGGGTCGTGGAGGTCGACG +
Preference number: 4 (lower is better)
Translates to: LVAGPVRGTLLSSQLSWSSVSFH*GSWRST
Trigger: CGTCGACCTCCACGACCCCCAGTGGAATGAGACAGA...ACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGCACGGCTCGGCAGGCTaGCTCTGTCTCATTCCACTG +
Preference number: 4 (lower is better)
Translates to: EGLETSLRGWCWHARTTKHGSAG*LCLIPL
Trigger: CAGTGGAATGAGACAGAGCCAGCCTGCCGAGCCGTG...CTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp TGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATAGGAGAAGTGGATGGTaGCCCCTGCTGGGTGAAGCC +
Preference number: 4 (lower is better)
Translates to: WPCEGHPAVKSALLESSHRRSGW*PLLGEA
Trigger: GGCTTCACCCAGCAGGGGCCACCATCCACTTCTCCT...ATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GTCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCACACAGGAGAAGTGGATaGTGGCCCCTGCTGGGTGAA +
Preference number: 4 (lower is better)
Translates to: VTVGIAGGEGVGGVSSQAHRRSG*WPLLGE
Trigger: TTCACCCAGCAGGGGCCACCATCCACTTCTCCTGTG...TGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCGGGGCACAGGAGAAGTaGATGGTGGCCCCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFGAQEK*MVAPAG
Trigger: CCCAGCAGGGGCCACCATCCACTTCTCCTGTGCCCC...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CTGGCATGCCATAACACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGCAGCGTCCAGGGCACTaGAGGCGGCAGGTGCCTTGG +
Preference number: 4 (lower is better)
Translates to: LACHNTVAGRGNMVSGSEQRPGH*RRQVPW
Trigger: CCAAGGCACCTGCCGCCTCCAGTGCCCTGGACGCTG...CTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGTGTTATGGCATGCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp TGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCGTGGACGCCTCGGTCTaGCTGCTCAGGTGTAGGGGC +
Preference number: 4 (lower is better)
Translates to: WGFLTSATFLGPWTSAPLVDASV*LLRCRG
Trigger: GCCCCTACACCTGAGCAGTCAGACCGAGGCGTCCAC...GAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp TGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGTCTCCAGGACCCTCCTaGGTTGGAGTCCATGCTTGG +
Preference number: 4 (lower is better)
Translates to: CEGHPAVKSALLESSHARSPGPS*VGVHAW
Trigger: CCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGA...CCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp TGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATTCTCCAGGACCCTCCTaGGTTGGAGTCCATGCTTGG +
Preference number: 4 (lower is better)
Translates to: WPCEGHPAVKSALLESSHSPGPS*VGVHAW
Trigger: CCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGA...ATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GTCCCAGCTACGTTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGTCTCCAGGACCCTCCTaGGTTGGAGTCCATGCTTGG +
Preference number: 4 (lower is better)
Translates to: VPATFYPRQMPLNPKKGPSPGPS*VGVHAW
Trigger: CCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGA...CGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp TGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATAGAGCCCTCTGGGCCTaGGAAATTCCAGCTACAGGG +
Preference number: 4 (lower is better)
Translates to: WPCEGHPAVKSALLESSHRALWA*EIPATG
Trigger: CCCTGTAGCTGGAATTTCTCAGGCCCAGAGGGCTCT...ATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp AGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACCCAGGCCCTCCACGGTaGTGGTCTCCCCTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: SQLSWSPHMPGRMVAMCNPGPPR*WSPLPE
Trigger: TTCAGGAAGGGGAGACCATCACCGTGGAGGGCCTGG...GTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp TTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCCCAGGCCCTCCACGGTaGTGGTCTCCCCTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: LRTILASGSWPCEGHPAVPGPPR*WSPLPE
Trigger: TTCAGGAAGGGGAGACCATCACCGTGGAGGGCCTGG...GACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GCTCCTCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGGAACCTGGCACCCTTaGGCTGGTAGCCAGTGGCAC +
Preference number: 4 (lower is better)
Translates to: APLQNVAALSWHAITQWQGTWHP*AGSQWH
Trigger: GTGCCACTGGCTACCAGCTCAAGGGTGCCAGGTTCC...CTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTCTCGGATGTCCAGCATaGTGCGCTTGTCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: VGIAGGEGVGGVSSQAVCLGCPA*CACPPP
Trigger: TGGAGGAGGACAAGCGCATCATGCTGGACATCCGAG...ACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTCACCAGCTCAGGCTGTaGTGGGTTCTTCCAGCCGTT +
Preference number: 4 (lower is better)
Translates to: VGIAGGEGVGGVSSQAVCHQLRL*WVLPAV
Trigger: AACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTG...ACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp AGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTCCAGGCACGCATTTaGTGCTGGCCTGGCCCTTCA +
Preference number: 4 (lower is better)
Translates to: RNLPEGLVLARQDYQEVTVQARI*CWPGPS
Trigger: TGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGAC...TGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACGCCTCGGTCTGACTaGTCAGGTGTAGGGGCTGCG +
Preference number: 4 (lower is better)
Translates to: FREGLETSLRGWCWHARTTPRSD*SGVGAA
Trigger: CGCAGCCCCTACACCTGAGCAGTCAGACCGAGGCGT...AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTGAGCAGTGTGGGCACTaGCATACTCGGCCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: FREGLETSLRGWCWHARTEQCGH*HTRPWR
Trigger: CCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCTC...AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp ACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGAGCCAGGAGAGACAATaGGGCCAGTGGTGGCATTCC +
Preference number: 4 (lower is better)
Translates to: TVAGRGNMVSGSEEGLVGSQERQ*GQWWHS
Trigger: GGAATGCCACCACTGGCCGCATTGTCTCTCCTGGCT...CCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGCATAGCGCAGGGCCATaGCTGCAGCTGCCCCACTGC +
Preference number: 4 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQHSAGP*LQLPHC
Trigger: GCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATG...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp CACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTCATGCACACCCCAGATaGAGTCCTGCCCTCGGCCAT +
Preference number: 4 (lower is better)
Translates to: HPAVKSALLESSHARQDGHAHPR*SPALGH
Trigger: ATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATG...ACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp TGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACATGCACACCCCAGATaGAGTCCTGCCCTCGGCCAT +
Preference number: 4 (lower is better)
Translates to: WALQAGKGLVVSLPRQYVHAHPR*SPALGH
Trigger: ATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATG...TACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCCACTCCACTTGGGACTaGCTGCTTGCCGATCATGGC +
Preference number: 4 (lower is better)
Translates to: REGLETSLRGWCWHARTTHSTWD*LLADHG
Trigger: GCCATGATCGGCAAGCAGGCAGTCCCAAGTGGAGTG...GGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp ACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGTGGATGGTGGCCCCTaGTGGGTGAAGCCGCTTCTC +
Preference number: 4 (lower is better)
Translates to: TILASGSWPCEGHPAVKSVDGGP*WVKPLL
Trigger: GAGAAGCGGCTTCACCCAGCAGGGGCCACCATCCAC...TGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp AGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGGTGGGTCACTCCAATaGGAGGGGTGTCCAGGCACG +
Preference number: 4 (lower is better)
Translates to: SPHMPGRMVAMCNKCPSSGGSLQ*EGCPGT
Trigger: CGTGCCTGGACACCCCTCGCATTGGAGTGACCCACC...TGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGAGGACCCTCCTGAGTTaGAGTCCATGCTTGGCTAGG +
Preference number: 4 (lower is better)
Translates to: SLWALQAGKGLVVSLPRQRTLLS*SPCLAR
Trigger: CCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCT...CTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp AGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACCATCAGAGGGTGAGCTaGGGGCCGTGGGGGAATCCA +
Preference number: 4 (lower is better)
Translates to: SQLSWSPHMPGRMVAMCNHQRVS*GPWGNP
Trigger: TGGATTCCCCCACGGCCCCCAGCTCACCCTCTGATG...GTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGCTCAGGGCTGCTTGGTaGGTGGGGCTGCGGATGACC +
Preference number: 4 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQLRAAW*VGLRMT
Trigger: GGTCATCCGCAGCCCCACCCACCAAGCAGCCCTGAG...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GTCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCACACATCTCCATACGCTaGACGTCGGGGAAAGTGGCA +
Preference number: 4 (lower is better)
Translates to: VTVGIAGGEGVGGVSSQAHISIR*TSGKVA
Trigger: TGCCACTTTCCCCGACGTCCAGCGTATGGAGATGTG...TGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCGCGCTGCCTCCTGGGTaGAGACTGGTGACAGTCACA +
Preference number: 4 (lower is better)
Translates to: TCQAGWWPCVTSAPPQSAALPPG*RLVTVT
Trigger: TGTGACTGTCACCAGTCTCCACCCAGGAGGCAGCGC...GGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp TTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCGTGGGCGCTGCCTCCTaGGTGGAGACTGGTGACAGT +
Preference number: 4 (lower is better)
Translates to: LRTILASGSWPCEGHPAVVGAAS*VETGDS
Trigger: ACTGTCACCAGTCTCCACCCAGGAGGCAGCGCCCAC...GACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GCTCCTCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGTGGGCGCTGCCTCCTaGGTGGAGACTGGTGACAGT +
Preference number: 4 (lower is better)
Translates to: APLQNVAALSWHAITQWQVGAAS*VETGDS
Trigger: ACTGTCACCAGTCTCCACCCAGGAGGCAGCGCCCAC...CTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCATGCAGGTGCAGCCGCTaGCTCTCTGGAGCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: TILASGSWPCEGHPAVKSCRCSR*LSGASS
Trigger: GCTAGAGGCTCCAGAGAGCCAGCGGCTGCACCTGCA...TGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATTTCCACTGGGGGTCGTaGAGGTCGACGCATTCGATG +
Preference number: 4 (lower is better)
Translates to: LWALQAGKGLVVSLPRQYFHWGS*RSTHSM
Trigger: CATCGAATGCGTCGACCTCCACGACCCCCAGTGGAA...ATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGTCTGTCTCATTCCACTaGGGGTCGTGGAGGTCGACG +
Preference number: 4 (lower is better)
Translates to: TVAGRGNMVSGSEEGLVGSVSFH*GSWRST
Trigger: CGTCGACCTCCACGACCCCCAGTGGAATGAGACAGA...CCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CCCTGCCGCTGGCCTGCGATGCAGGACTGCGTGTGCATCCCCAGGCTGCTCCCAGTCAGCACAAAACCCTaGTCACAGACATATTGCACA +
Preference number: 4 (lower is better)
Translates to: PCRWPAMQDCVCIPRLLPVSTKP*SQTYCT
Trigger: TGTGCAATATGTCTGTGACCAGGGTTTTGTGCTGAC...TGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGCCCTGTCACTCCACTTaGGACTGCCTGCTTGCCGAT +
Preference number: 4 (lower is better)
Translates to: GTLLSSQLSWSPHMPGRMPCHST*DCLLAD
Trigger: ATCGGCAAGCAGGCAGTCCCAAGTGGAGTGACAGGG...CATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTGATGGTGGCCCCTGCTaGGTGAAGCCGCTTCTCAGG +
Preference number: 4 (lower is better)
Translates to: FREGLETSLRGWCWHARTDGGPC*VKPLLR
Trigger: CCTGAGAAGCGGCTTCACCCAGCAGGGGCCACCATC...AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GAGCGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAGGAGAAGTGGATGGTaGCCCCTGCTGGGTGAAGCC +
Preference number: 4 (lower is better)
Translates to: EREYPSSGAQPELGIESLRRSGW*PLLGEA
Trigger: GGCTTCACCCAGCAGGGGCCACCATCCACTTCTCCT...CAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTCACAGGAGAAGTGGATaGTGGCCCCTGCTGGGTGAA +
Preference number: 4 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGHRRSG*WPLLGE
Trigger: TTCACCCAGCAGGGGCCACCATCCACTTCTCCTGTG...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GTCCCAGCTACGTTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGCCTACAGATGGGTGGTaGGTCACTCCAATGCGAGGG +
Preference number: 4 (lower is better)
Translates to: VPATFYPRQMPLNPKKGPPTDGW*VTPMRG
Trigger: CCCTCGCATTGGAGTGACCCACCACCCATCTGTAGG...CGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp ACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTTGCCTACAGATGGGTGGTaGGTCACTCCAATGCGAGGG +
Preference number: 4 (lower is better)
Translates to: TSLRGWCWHARTTKRSQLPTDGW*VTPMRG
Trigger: CCCTCGCATTGGAGTGACCCACCACCCATCTGTAGG...CAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TGCCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTGGAGCGTGAGTATCCATCCAAGGCGGCAGGTGCCTTaGCAACAGCCCTACAGATGG +
Preference number: 4 (lower is better)
Translates to: CRRAVGCPALVWSVSIHPRRQVP*QQPYRW
Trigger: CCATCTGTAGGGCTGTTGCCAAGGCACCTGCCGCCT...TGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000646.14
CDS-3UTR CCA 90 bp CACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTCCAATGGTAGGAAGATaGCAGCAGCCAGGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: HCGHCRRGRGWWCLFPGSPMVGR*QQPGEQ
Trigger: CTGCTCACCTGGCTGCTGCCATCTTCCTACCATTGG...ACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
3UTR CAA 72 bp ATTCTCCGGGGCGCTGAGGCCATGGCACGGCTTGAATaGTTCCAAGAGACACTTGGGGGCCCTGTCACTCCA +
Preference number: 4 (lower is better)
Translates to: ILRGAEAMARLE*FQETLGGPVTP
Trigger: TGGAGTGACAGGGCCCCCAAGTGTCTCTTGGAACAATTCAAGCCGTGCCATGGCCTCAGCGCCCCGGAGAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp TGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGAGTAAAGTGTGTAGGTaGGTCCGGCTGGAAGGGCAG +
Preference number: 4 (lower is better)
Translates to: CEGHPAVKSALLESSHARSKVCR*VRLEGQ
Trigger: CTGCCCTTCCAGCCGGACTCACCTACACACTTTACT...CCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTCTCTTCGTCATCCCCTaGAGCTGTGGAGGTGGCAAT +
Preference number: 4 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGLFVIP*SCGGGN
Trigger: ATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAG...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GTCCCAGCTACGTTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGCTCTTCGTCATCCCCTaGAGCTGTGGAGGTGGCAAT +
Preference number: 4 (lower is better)
Translates to: VPATFYPRQMPLNPKKGPLFVIP*SCGGGN
Trigger: ATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAG...CGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GTCCCAGCTACGTTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGCTGGGTGGAGACTGGTaGCAGTCACATCTCCATACG +
Preference number: 4 (lower is better)
Translates to: VPATFYPRQMPLNPKKGPLGGDW*QSHLHT
Trigger: CGTATGGAGATGTGACTGTCACCAGTCTCCACCCAG...CGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp TGGCAGGTGAGAATGGCACTCCCCGTCAGCACAAAACCCTGGTCACAGACATATCGCCTGCAGAGTCTGTaGTCTCCCCGCTGCACACGG +
Preference number: 4 (lower is better)
Translates to: WQVRMALPVSTKPWSQTYRLQSL*SPRCTR
Trigger: CCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCG...ATATGTCTGTGACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp TGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACACCAGCTCAGGCTGTaGTGGGTTCTTCCAGCCGTT +
Preference number: 4 (lower is better)
Translates to: WALQAGKGLVVSLPRQYVHQLRL*WVLPAV
Trigger: AACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTG...TACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp ACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGGTAGCACTGATAGGTaGCCACCGTGCCGTGCACCA +
Preference number: 4 (lower is better)
Translates to: TILASGSWPCEGHPAVKSGSTDR*PPCRAP
Trigger: TGGTGCACGGCACGGTGGTCACCTATCAGTGCTACC...TGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp ACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGGAGACCTTTTCAAAGTaGAGGTGCAGCCGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: TVAGRGNMVSGSEEGLVGETFSK*RCSRWL
Trigger: GAGCCAGCGGCTGCACCTGCACTTTGAAAAGGTCTC...CCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp GTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGAAGTTGTCCTCCTCCACATaGACACCCCAGATGCAGTCC +
Preference number: 4 (lower is better)
Translates to: VAGRGNMVSGSEEGLVGKLSSST*TPQMQS
Trigger: GGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAA...CTTCCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp AGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAATGAGGCGTCGGCTGTaGTCCACATCCCCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: SPHMPGRMVAMCNKCPSSMRRRL*STSPGS
Trigger: TGACCCAGGGGATGTGGAGCACAGCCGACGCCTCAT...TGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTATGAGGCGTCGGCTGTaGTCCACATCCCCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: FREGLETSLRGWCWHARTMRRRL*STSPGS
Trigger: TGACCCAGGGGATGTGGAGCACAGCCGACGCCTCAT...AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATTTGGGACTGCCTGCTTaGCGATCATGGCAGGTGAGA +
Preference number: 4 (lower is better)
Translates to: WPCEGHPAVKSALLESSHLGLPA*RSWQVR
Trigger: TCTCACCTGCCATGATCGGCAAGCAGGCAGTCCCAA...ATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGGTAGGTGAGTCCGGCTaGAAGGGCAGTGCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQVGESG*KGSAGC
Trigger: GCAGCCTGCACTGCCCTTCCAGCCGGACTCACCTAC...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp ATGCCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTGGAGCGTGAGTATCCATCCGCTACAGGGGCCTGGTaGCTGAACTGTGGTGACAGT +
Preference number: 4 (lower is better)
Translates to: MPESRRVSCFGVEREYPSATGAW*LNCGDS
Trigger: ACTGTCACCACAGTTCAGCCACCAGGCCCCTGTAGC...GGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCCCAGCTACAGGGGCCTaGTGGCTGAACTGTGGTGAC +
Preference number: 4 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFPATGA*WLNCGD
Trigger: GTCACCACAGTTCAGCCACCAGGCCCCTGTAGCTGG...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp AGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCACCAGCTACAGGGGCCTaGTGGCTGAACTGTGGTGAC +
Preference number: 4 (lower is better)
Translates to: SPHMPGRMVAMCNKCPSSPATGA*WLNCGD
Trigger: GTCACCACAGTTCAGCCACCAGGCCCCTGTAGCTGG...TGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGCATCAGAGGGTGAGCTaGGGGCCGTGGGGGAATCCA +
Preference number: 4 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQHQRVS*GPWGNP
Trigger: TGGATTCCCCCACGGCCCCCAGCTCACCCTCTGATG...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp TCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGAAGGAACCTCAGGGCTGCTTaGTGGGTGGGGCTGCGGATG +
Preference number: 4 (lower is better)
Translates to: SPECSCPLLACHNTVAGRNLRAA*WVGLRM
Trigger: CATCCGCAGCCCCACCCACCAAGCAGCCCTGAGGTT...CCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GCTCCTCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGCGCTGCCTCCTGGGTaGAGACTGGTGACAGTCACA +
Preference number: 4 (lower is better)
Translates to: APLQNVAALSWHAITQWQALPPG*RLVTVT
Trigger: TGTGACTGTCACCAGTCTCCACCCAGGAGGCAGCGC...CTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGGCCTCTAGCAACCAGTaGCAGGTGAGGTTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: TVAGRGNMVSGSEEGLVGASSNQ*QVRLLL
Trigger: CAGCAACAACCTCACCTGCCACTGGTTGCTAGAGGC...CCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp TCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGAAGGTGCAGGTGCAGCCGCTaGCTCTCTGGAGCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: SPECSCPLLACHNTVAGRCRCSR*LSGASS
Trigger: GCTAGAGGCTCCAGAGAGCCAGCGGCTGCACCTGCA...CCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTTTCCACTGGGGGTCGTaGAGGTCGACGCATTCGATG +
Preference number: 4 (lower is better)
Translates to: HPAVKSALLESSHARQDGFHWGS*RSTHSM
Trigger: CATCGAATGCGTCGACCTCCACGACCCCCAGTGGAA...ACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGGGGTCTGACTGGAACTaGATGGTGACATCGGCCATG +
Preference number: 4 (lower is better)
Translates to: EGLETSLRGWCWHARTTKGSDWN*MVTSAM
Trigger: CATGGCCGATGTCACCATCCAGTTCCAGTCAGACCC...CTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGTCCCAGGGTCTGACTaGAACTGGATGGTGACATCG +
Preference number: 4 (lower is better)
Translates to: WPCEGHPAVKSALLESSHVPGSD*NWMVTS
Trigger: CGATGTCACCATCCAGTTCCAGTCAGACCCTGGGAC...ATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCGTCCCAGGGTCTGACTaGAACTGGATGGTGACATCG +
Preference number: 4 (lower is better)
Translates to: LLSSQLSWSPHMPGRMVAVPGSD*NWMVTS
Trigger: CGATGTCACCATCCAGTTCCAGTCAGACCCTGGGAC...GGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCGTGCTCCACATCCCCTaGGTCATGGCAAGATGTCAC +
Preference number: 4 (lower is better)
Translates to: LLSSQLSWSPHMPGRMVAVLHIP*VMARCH
Trigger: GTGACATCTTGCCATGACCCAGGGGATGTGGAGCAC...GGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTGCTCCACATCCCCTaGGTCATGGCAAGATGTCAC +
Preference number: 4 (lower is better)
Translates to: LWALQAGKGLVVSLPRQYVLHIP*VMARCH
Trigger: GTGACATCTTGCCATGACCCAGGGGATGTGGAGCAC...ATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCGATGGTGGCCCCTGCTaGGTGAAGCCGCTTCTCAGG +
Preference number: 4 (lower is better)
Translates to: WGFLTSATFLGPWTSAPLDGGPC*VKPLLR
Trigger: CCTGAGAAGCGGCTTCACCCAGCAGGGGCCACCATC...GAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGTGCCAAGACCAATGGTAGGAAGATaGCAGCAGCCAGGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: ADAPESKEGPEVGTAVPRPMVGR*QQPGEQ
Trigger: CTGCTCACCTGGCTGCTGCCATCTTCCTACCATTGG...TCTTGGCACCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp AGGGCCCGAAGTGGGCACAGCGGTGCCAAGAAAATAGGTCACTGTGGGCATTGCCTCTTCGTCATCCCCTaGAGCTGTGGAGGTGGCAAT +
Preference number: 4 (lower is better)
Translates to: RARSGHSGAKKIGHCGHCLFVIP*SCGGGN
Trigger: ATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAG...GCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp ACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAAGAGCCCTCTGGGCCTaGGAAATTCCAGCTACAGGG +
Preference number: 4 (lower is better)
Translates to: TILASGSWPCEGHPAVKSRALWA*EIPATG
Trigger: CCCTGTAGCTGGAATTTCTCAGGCCCAGAGGGCTCT...TGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGAGTGTCTGCCAGAGCTaGGCAGGCCCTCAATGGGCA +
Preference number: 4 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQSVCQS*AGPQWA
Trigger: TGCCCATTGAGGGCCTGCTCAGCTCTGGCAGACACT...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp CTGAGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACAATGGAAGTGGGCGCTaGCTCCTGGGTGGAGACTGG +
Preference number: 4 (lower is better)
Translates to: LRLLLGVLDFCHIPGSLDNGSGR*LLGGDW
Trigger: CCAGTCTCCACCCAGGAGGCAGCGCCCACTTCCATT...GTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp TCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGCCTGTCGTCGTCTTCTaGCAGGGAGACCTTTTCAAA +
Preference number: 4 (lower is better)
Translates to: SLWALQAGKGLVVSLPRQPVVVF*QGDLFK
Trigger: TTTGAAAAGGTCTCCCTGGCAGAAGACGACGACAGG...CTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp TTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTCACAGGGTAGGACGGTaGACTGCTGCTGAAGTTGCC +
Preference number: 4 (lower is better)
Translates to: FREGLETSLRGWCWHARTHRVGR*TAAEVA
Trigger: GGCAACTTCAGCAGCAGTGCACCGTCCTACCCTGTG...AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTATTGTCCTCCTCCACATaGACACCCCAGATGCAGTCC +
Preference number: 4 (lower is better)
Translates to: WALQAGKGLVVSLPRQYVLSSST*TPQMQS
Trigger: GGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAA...TACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp ACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCACACTCCACTTGGGACTaGCTGCTTGCCGATCATGGC +
Preference number: 4 (lower is better)
Translates to: TILASGSWPCEGHPAVKSHSTWD*LLADHG
Trigger: GCCATGATCGGCAAGCAGGCAGTCCCAAGTGGAGTG...TGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp ACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCATGCTGCAGCCACGGCTaGAGTCGGACTGGTAAAGAC +
Preference number: 4 (lower is better)
Translates to: TILASGSWPCEGHPAVKSCCSHG*SRTGKD
Trigger: GTCTTTACCAGTCCGACTCCAGCCGTGGCTGCAGCA...TGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCCTTAGACATGACCTCTaGAACCCAAGGTCTGTCCAT +
Preference number: 4 (lower is better)
Translates to: WPLVAGPVRGTLLSSQLSLRHDL*NPRSVH
Trigger: ATGGACAGACCTTGGGTTCCAGAGGTCATGTCTAAG...GGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTCATCCCCTGAAGCTGTaGAGGTGGCAATGGTTCCCT +
Preference number: 4 (lower is better)
Translates to: HPAVKSALLESSHARQDGHPLKL*RWQWFP
Trigger: AGGGAACCATTGCCACCTCCACAGCTTCAGGGGATG...ACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp TTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCGCTACAGGGGCCTGGTaGCTGAACTGTGGTGACAGT +
Preference number: 4 (lower is better)
Translates to: LRTILASGSWPCEGHPAVATGAW*LNCGDS
Trigger: ACTGTCACCACAGTTCAGCCACCAGGCCCCTGTAGC...GACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GTCCCAGCTACGTTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGGAATCCCAAAAGGGCTaGGTGGCATTGAGACAGGTG +
Preference number: 4 (lower is better)
Translates to: VPATFYPRQMPLNPKKGPESQKG*VALRQV
Trigger: CACCTGTCTCAATGCCACCCAGCCCTTTTGGGATTC...CGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGAAGGAATCCCAAAAGGGCTaGGTGGCATTGAGACAGGTG +
Preference number: 4 (lower is better)
Translates to: VAGRGNMVSGSEEGLVGKESQKG*VALRQV
Trigger: CACCTGTCTCAATGCCACCCAGCCCTTTTGGGATTC...CTTCCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGACACGGCTCGGCAGGCTaGCTCTGTCTCATTCCACTG +
Preference number: 4 (lower is better)
Translates to: PSSGAQPELGIESLNLLGHGSAG*LCLIPL
Trigger: CAGTGGAATGAGACAGAGCCAGCCTGCCGAGCCGTG...TCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCCCCTGTCACTCCACTTaGGACTGCCTGCTTGCCGAT +
Preference number: 4 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFPCHST*DCLLAD
Trigger: ATCGGCAAGCAGGCAGTCCCAAGTGGAGTGACAGGG...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGTTCCAAGAGACACTTaGGGGCCCTGTCACTCCACT +
Preference number: 4 (lower is better)
Translates to: HPAVKSALLESSHARQDGVPRDT*GPCHST
Trigger: AGTGGAGTGACAGGGCCCCCAAGTGTCTCTTGGAAC...ACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGTGCCAAGACCACCAGCAACACCATaGCCACCAATGGTAGGAAGA +
Preference number: 4 (lower is better)
Translates to: ADAPESKEGPEVGTAVPRPPATP*PPMVGR
Trigger: TCTTCCTACCATTGGTGGCCATGGTGTTGCTGGTGG...TCTTGGCACCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTAGGCAGCCCTACAGATaGGTGGTGGGTCACTCCAAT +
Preference number: 4 (lower is better)
Translates to: HPAVKSALLESSHARQDGRQPYR*VVGHSN
Trigger: ATTGGAGTGACCCACCACCCATCTGTAGGGCTGCCT...ACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093995.10
3UTR CAA 72 bp AACTGGATGGTGACATCGGCCATGGAGGTAAAGAGCTaGAAGTGGCCACGGGGCCCTGAGTATTGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: NWMVTSAMEVKS*KWPRGPEYWPR
Trigger: CCTGGGCCAATACTCAGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCCGATGTCACCATCCAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
3UTR CAA 72 bp AGGCCATGGCACGGCTTGAATTGTTCCAAGAGACACTaGGGGGCCCTGTCACTCCACTTGGGACTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: RPWHGLNCSKRH*GALSLHLGLPA
Trigger: AGCAGGCAGTCCCAAGTGGAGTGACAGGGCCCCCAAGTGTCTCTTGGAACAATTCAAGCCGTGCCATGGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp ACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCACTGGGTGGAGACTGGTaGCAGTCACATCTCCATACG +
Preference number: 4 (lower is better)
Translates to: TILASGSWPCEGHPAVKSLGGDW*QSHLHT
Trigger: CGTATGGAGATGTGACTGTCACCAGTCTCCACCCAG...TGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp ACCAAGAGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGAACCTGGCACCCTTaGGCTGGTAGCCAGTGGCAC +
Preference number: 4 (lower is better)
Translates to: TKRSQLRTILASGSWPCEGTWHP*AGSQWH
Trigger: GTGCCACTGGCTACCAGCTCAAGGGTGCCAGGTTCC...CTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp TTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTGCAACCAGTGGCAGGTaGGGTTGTTGCTGTAGTTCC +
Preference number: 4 (lower is better)
Translates to: FREGLETSLRGWCWHARTATSGR*GCCCSS
Trigger: GGAACTACAGCAACAACCTCACCTGCCACTGGTTGC...AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp TGGCAGGTGAGAATGGCACTCCCCGTCAGCACAAAACCCTGGTCACAGACATATAATGGAAGTGGGCGCTaGCTCCTGGGTGGAGACTGG +
Preference number: 4 (lower is better)
Translates to: WQVRMALPVSTKPWSQTYNGSGR*LLGGDW
Trigger: CCAGTCTCCACCCAGGAGGCAGCGCCCACTTCCATT...ATATGTCTGTGACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp AGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACGAGACCTTTTCAAAGTaGAGGTGCAGCCGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: SQLSWSPHMPGRMVAMCNETFSK*RCSRWL
Trigger: GAGCCAGCGGCTGCACCTGCACTTTGAAAAGGTCTC...GTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCCCTGTCGTCGTCTTCTaGCAGGGAGACCTTTTCAAA +
Preference number: 4 (lower is better)
Translates to: REGLETSLRGWCWHARTTPVVVF*QGDLFK
Trigger: TTTGAAAAGGTCTCCCTGGCAGAAGACGACGACAGG...GGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp CTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCCCTGTCGTCGTCTTCTaGCAGGGAGACCTTTTCAAA +
Preference number: 4 (lower is better)
Translates to: LLSSQLSWSPHMPGRMVAPVVVF*QGDLFK
Trigger: TTTGAAAAGGTCTCCCTGGCAGAAGACGACGACAGG...GGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp CTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCGACATATTGCACAGTTaGTCCCACGGGAAACTTGGG +
Preference number: 4 (lower is better)
Translates to: LLSSQLSWSPHMPGRMVADILHS*SHGKLG
Trigger: CCCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTC...GGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp ACCAAGAGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGTGGATGGTGGCCCCTaGTGGGTGAAGCCGCTTCTC +
Preference number: 4 (lower is better)
Translates to: TKRSQLRTILASGSWPCEVDGGP*WVKPLL
Trigger: GAGAAGCGGCTTCACCCAGCAGGGGCCACCATCCAC...CTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCAAATTCTTCCAGAAGTaGGTGGTGGTTGAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: WPLVAGPVRGTLLSSQLSKFFQK*VVVEQL
Trigger: AAGCTGCTCAACCACCACCCACTTCTGGAAGAATTT...GGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TCTTCCAGCCGTTGGGGATCTCGGGTAGCTCTGGACATGTGTCGTTGCGGGGAAGTTGGAGTCCATGCTTaGCTAGGGGGTGTAGTACTG +
Preference number: 4 (lower is better)
Translates to: SSSRWGSRVALDMCRCGEVGVHA*LGGVVL
Trigger: CAGTACTACACCCCCTAGCCAAGCATGGACTCCAAC...TTCCCCGCAACGACACATGTCCAGAGCTACCCGAGATCCCCAACGGCTGGAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACAGGACCCTCCTGAGTTaGAGTCCATGCTTGGCTAGG +
Preference number: 4 (lower is better)
Translates to: REYPSSGAQPELGIESLNRTLLS*SPCLAR
Trigger: CCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCT...GTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GCTGTGATGGGTTCTTCCAGCCGTTGGGGATCTCGGGTAGCTCTGGACATGTGTCATCCCCTGAAGCTGTaGAGGTGGCAATGGTTCCCT +
Preference number: 4 (lower is better)
Translates to: AVMGSSSRWGSRVALDMCHPLKL*RWQWFP
Trigger: AGGGAACCATTGCCACCTCCACAGCTTCAGGGGATG...ACACATGTCCAGAGCTACCCGAGATCCCCAACGGCTGGAAGAACCCATCACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp AATCATCACCTCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTGAGCCTTCTCAGGGCTGCTTGGTaGGTGGGGCTGCGGATGACC +
Preference number: 4 (lower is better)
Translates to: NHHLPGQGRRLNCPILSLLRAAW*VGLRMT
Trigger: GGTCATCCGCAGCCCCACCCACCAAGCAGCCCTGAG...AAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCACACATCTCCATACGCTaGACGTCGGGGAAAGTGGCA +
Preference number: 4 (lower is better)
Translates to: TILASGSWPCEGHPAVKSHISIR*TSGKVA
Trigger: TGCCACTTTCCCCGACGTCCAGCGTATGGAGATGTG...TGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp TGCCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTGGAGCGTGAGTATCCATCCAGAATCCCAAAAGGGCTaGGTGGCATTGAGACAGGTG +
Preference number: 4 (lower is better)
Translates to: CRRAVGCPALVWSVSIHPESQKG*VALRQV
Trigger: CACCTGTCTCAATGCCACCCAGCCCTTTTGGGATTC...TGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp AGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGCCTCTAGCAACCAGTaGCAGGTGAGGTTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: SPHMPGRMVAMCNKCPSSASSNQ*QVRLLL
Trigger: CAGCAACAACCTCACCTGCCACTGGTTGCTAGAGGC...TGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp TTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCGCCTCTAGCAACCAGTaGCAGGTGAGGTTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: LRTILASGSWPCEGHPAVASSNQ*QVRLLL
Trigger: CAGCAACAACCTCACCTGCCACTGGTTGCTAGAGGC...GACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGATTCCACTGGGGGTCGTaGAGGTCGACGCATTCGATG +
Preference number: 4 (lower is better)
Translates to: PSSGAQPELGIESLNLLGFHWGS*RSTHSM
Trigger: CATCGAATGCGTCGACCTCCACGACCCCCAGTGGAA...TCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GTCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCACAGCTTAGGTCCCACTaGCACATGAGAATACTGGAT +
Preference number: 4 (lower is better)
Translates to: VTVGIAGGEGVGGVSSQAQLRSH*HMRILD
Trigger: ATCCAGTATTCTCATGTGCCAGTGGGACCTAAGCTG...TGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp ACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGCAAGATGTCACTCTCTaGCATGAAGGCAGGTCCTCA +
Preference number: 4 (lower is better)
Translates to: TVAGRGNMVSGSEEGLVGQDVTL*HEGRSS
Trigger: TGAGGACCTGCCTTCATGCCAGAGAGTGACATCTTG...CCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp AGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGATTCTTAGGGGCACAGGAGAAGTaGATGGTGGCCCCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: SGAQPELGIESLNLLGFLGAQEK*MVAPAG
Trigger: CCCAGCAGGGGCCACCATCCACTTCTCCTGTGCCCC...TAAGAATCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp AGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACAGCCCTACAGATGGGTaGTGGGTCACTCCAATGCGA +
Preference number: 4 (lower is better)
Translates to: SQLSWSPHMPGRMVAMCNSPTDG*WVTPMR
Trigger: TCGCATTGGAGTGACCCACCACCCATCTGTAGGGCT...GTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GAGCGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGCAACAGCCCTACAGATaGGTGGTGGGTCACTCCAAT +
Preference number: 4 (lower is better)
Translates to: EREYPSSGAQPELGIESLQQPYR*VVGHSN
Trigger: ATTGGAGTGACCCACCACCCATCTGTAGGGCTGTTG...CAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000646.14
CDS-3UTR TCA 90 bp TCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGAAGGGCAACCAGTGGCAGGTaGGGTTGTTGCTGTAGTTCC +
Preference number: 4 (lower is better)
Translates to: SPECSCPLLACHNTVAGRATSGR*GCCCSS
Trigger: GGAACTACAGCAACAACCTCACCTGCCACTGGTTGC...CCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp ATAATACATCATATGTACAAAGTGGCCTCGGTCCGGACTGAGATTGCTCCTGGGCGCCTGCAGAGTCTGTaGTCTCCCCGCTGCACACGG +
Preference number: 4 (lower is better)
Translates to: IIHHMYKVASVRTEIAPGRLQSL*SPRCTR
Trigger: CCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCG...CCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGATGTATTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp CTGAGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACTGTCACTCTCTGGCATaGAGGCAGGTCCTCACTCCA +
Preference number: 4 (lower is better)
Translates to: LRLLLGVLDFCHIPGSLDCHSLA*RQVLTP
Trigger: TGGAGTGAGGACCTGCCTTCATGCCAGAGAGTGACA...GTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTTGGATTGTCAAATGCTaGCTCTACCGTGATGCGGTT +
Preference number: 4 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGWIVKC*LYRDAV
Trigger: AACCGCATCACGGTAGAGTCAGCATTTGACAATCCA...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp GCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGTGCCAAGATGGATTGTCAAATGCTaGCTCTACCGTGATGCGGTT +
Preference number: 4 (lower is better)
Translates to: ADAPESKEGPEVGTAVPRWIVKC*LYRDAV
Trigger: AACCGCATCACGGTAGAGTCAGCATTTGACAATCCA...TCTTGGCACCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp ACCAAGAGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGCCATGCCTGCAGCTaGCCCACTGCTGTCAGTACT +
Preference number: 4 (lower is better)
Translates to: TKRSQLRTILASGSWPCEGHACS*PTAVST
Trigger: AGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCC...CTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp TGGCAGGTGAGAATGGCACTCCCCGTCAGCACAAAACCCTGGTCACAGACATATAGAGAGCACCACGCCTaGAGAGTCTGTGATCTCCCC +
Preference number: 4 (lower is better)
Translates to: WQVRMALPVSTKPWSQTYREHHA*RVCDLP
Trigger: GGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCT...ATATGTCTGTGACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp AGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGACATATTGCACAGTTaGTCCCACGGGAAACTTGGG +
Preference number: 4 (lower is better)
Translates to: RNLPEGLVLARQDYQEVTDILHS*SHGKLG
Trigger: CCCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTC...TGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp CTGGCATGCCATAACACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGTTGGGACTGCCTGCTTaGCGATCATGGCAGGTGAGA +
Preference number: 4 (lower is better)
Translates to: LACHNTVAGRGNMVSGSELGLPA*RSWQVR
Trigger: TCTCACCTGCCATGATCGGCAAGCAGGCAGTCCCAA...CTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGTGTTATGGCATGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACTCCAGAAGTGGGTGGTaGTTGAGCAGCTTGAGGGTA +
Preference number: 4 (lower is better)
Translates to: REYPSSGAQPELGIESLNSRSGW*LSSLRV
Trigger: TACCCTCAAGCTGCTCAACCACCACCCACTTCTGGA...GTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp AGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACTCCAGAAGTGGGTGGTaGTTGAGCAGCTTGAGGGTA +
Preference number: 4 (lower is better)
Translates to: SQLSWSPHMPGRMVAMCNSRSGW*LSSLRV
Trigger: TACCCTCAAGCTGCTCAACCACCACCCACTTCTGGA...GTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGAAATTCTTCCAGAAGTaGGTGGTGGTTGAGCAGCTT +
Preference number: 4 (lower is better)
Translates to: YPRQMPLNPKKGPKWAQRKFFQK*VVVEQL
Trigger: AAGCTGCTCAACCACCACCCACTTCTGGAAGAATTT...CCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp AGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTGCAGCCACGGCTaGAGTCGGACTGGTAAAGAC +
Preference number: 4 (lower is better)
Translates to: RLLLGVLDFCHIPGSLDICCSHG*SRTGKD
Trigger: GTCTTTACCAGTCCGACTCCAGCCGTGGCTGCAGCA...GATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTAAAGCTCAGGGGGTTTaGATTCTAGGTTCCAAGGTT +
Preference number: 4 (lower is better)
Translates to: HCGHCRRGRGWWCLFPGSKAQGV*ILGSKV
Trigger: AACCTTGGAACCTAGAATCCAAACCCCCTGAGCTTT...ACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCAGGACCCTCCTGAGTTaGAGTCCATGCTTGGCTAGG +
Preference number: 4 (lower is better)
Translates to: WGFLTSATFLGPWTSAPLRTLLS*SPCLAR
Trigger: CCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCT...GAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGCATCCCCTGAAGCTGTaGAGGTGGCAATGGTTCCCT +
Preference number: 4 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQHPLKL*RWQWFP
Trigger: AGGGAACCATTGCCACCTCCACAGCTTCAGGGGATG...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ATAATACATCATATGTACAAAGTGGCCTCGGTCCGGACTGAGATTGCTCCTGGGGGGCTGCGGATGACCTaGCCCCTCAGCAGGAACGAC +
Preference number: 4 (lower is better)
Translates to: IIHHMYKVASVRTEIAPGGLRMT*PLSRND
Trigger: GTCGTTCCTGCTGAGGGGCCAGGTCATCCGCAGCCC...CCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGATGTATTAT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp AATCATCACCTCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTGAGCCTTGTGGCACAATGGAAGTaGGCGCTGCCTCCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: NHHLPGQGRRLNCPILSLVAQWK*ALPPGW
Trigger: CCACCCAGGAGGCAGCGCCCACTTCCATTGTGCCAC...AAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ACCAAGAGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGCACGGCTCGGCAGGCTaGCTCTGTCTCATTCCACTG +
Preference number: 4 (lower is better)
Translates to: TKRSQLRTILASGSWPCEHGSAG*LCLIPL
Trigger: CAGTGGAATGAGACAGAGCCAGCCTGCCGAGCCGTG...CTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp TGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCAGCCCTACAGATGGGTaGTGGGTCACTCCAATGCGA +
Preference number: 4 (lower is better)
Translates to: WGFLTSATFLGPWTSAPLSPTDG*WVTPMR
Trigger: TCGCATTGGAGTGACCCACCACCCATCTGTAGGGCT...GAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
3UTR CAA 72 bp TCACAGACATATTGCACAGTTGCTCCCACGGGAAACTaGGGGCTGGATATGAGGCGTCGGCTGTGCTCCACA +
Preference number: 4 (lower is better)
Translates to: SQTYCTVAPTGN*GLDMRRRLCST
Trigger: TGTGGAGCACAGCCGACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTCTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAAGGAAGGAACCTGGCACCCTTaGGCTGGTAGCCAGTGGCAC +
Preference number: 4 (lower is better)
Translates to: GGTGGEGDICNSQINFKEGTWHP*AGSQWH
Trigger: GTGCCACTGGCTACCAGCTCAAGGGTGCCAGGTTCC...TTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp CTCAGAGGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAGTGTCTGCCAGAGCTaGGCAGGCCCTCAATGGGCA +
Preference number: 4 (lower is better)
Translates to: LRGGTGGEGDICNSQINFSVCQS*AGPQWA
Trigger: TGCCCATTGAGGGCCTGCTCAGCTCTGGCAGACACT...GAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp ACCAAGAGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGCTCGGATGTCCAGCATaGTGCGCTTGTCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: TKRSQLRTILASGSWPCELGCPA*CACPPP
Trigger: TGGAGGAGGACAAGCGCATCATGCTGGACATCCGAG...CTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAAGGAACCAGGACCCGGGCTGTaGGGTCATCCCCATCGTAGA +
Preference number: 4 (lower is better)
Translates to: GGTGGEGDICNSQINFKEPGPGL*GHPHRR
Trigger: TCTACGATGGGGATGACCTCACAGCCCGGGTCCTGG...TTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp GCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGTGCCAAGACCTCAAAGAAGTGGATaGCAAATCCTTGCTGGTAAC +
Preference number: 4 (lower is better)
Translates to: ADAPESKEGPEVGTAVPRPQRSG*QILAGN
Trigger: GTTACCAGCAAGGATTTGTCATCCACTTCTTTGAGG...TCTTGGCACCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp AGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCGGTCCCACTGGCACATaGGAATACTGGATCCCACCA +
Preference number: 4 (lower is better)
Translates to: RLLLGVLDFCHIPGSLDIGPTGT*EYWIPP
Trigger: TGGTGGGATCCAGTATTCTCATGTGCCAGTGGGACC...GATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TCTTCCAGCCGTTGGGGATCTCGGGTAGCTCTGGACATGTGTCGTTGCGGGGAACACCACAAGCAGCAATaGAAACAGGCTCTTGGGAAT +
Preference number: 4 (lower is better)
Translates to: SSSRWGSRVALDMCRCGEHHKQQ*KQALGN
Trigger: ATTCCCAAGAGCCTGTTTGCATTGCTGCTTGTGGTG...TTCCCCGCAACGACACATGTCCAGAGCTACCCGAGATCCCCAACGGCTGGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp CTCAGAGGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCGGCCATGCCTGCAGCTaGCCCACTGCTGTCAGTACT +
Preference number: 4 (lower is better)
Translates to: LRGGTGGEGDICNSQINFGHACS*PTAVST
Trigger: AGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCC...GAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp AATCATCACCTCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTGAGCCTTGTGACCACCGTGCCGTaGACCAGCTCAGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: NHHLPGQGRRLNCPILSLVTTVP*TSSGCD
Trigger: ATCACAGCCTGAGCTGGTGCACGGCACGGTGGTCAC...AAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp CGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACTGGTCACAGACATATTaGACAGTTGCTCCCACGGGA +
Preference number: 4 (lower is better)
Translates to: REYPSSGAQPELGIESLNWSQTY*TVAPTG
Trigger: TCCCGTGGGAGCAACTGTGCAATATGTCTGTGACCA...GTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp TGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCGTTGGAGTCCATGCTTaGCTAGGGGGTGTAGTACTG +
Preference number: 4 (lower is better)
Translates to: WGFLTSATFLGPWTSAPLVGVHA*LGGVVL
Trigger: CAGTACTACACCCCCTAGCCAAGCATGGACTCCAAC...GAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp AGGGCCCGAAGTGGGCACAGCGGTGCCAAGAAAATAGGTCACTGTGGGCATTGCCTTAGACATGACCTCTaGAACCCAAGGTCTGTCCAT +
Preference number: 4 (lower is better)
Translates to: RARSGHSGAKKIGHCGHCLRHDL*NPRSVH
Trigger: ATGGACAGACCTTGGGTTCCAGAGGTCATGTCTAAG...GCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp AGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACACTTAGACATGACCTCTaGAACCCAAGGTCTGTCCAT +
Preference number: 4 (lower is better)
Translates to: RNLPEGLVLARQDYQEVTLRHDL*NPRSVH
Trigger: ATGGACAGACCTTGGGTTCCAGAGGTCATGTCTAAG...TGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp CTCAGAGGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCGCGCTGCCTCCTGGGTaGAGACTGGTGACAGTCACA +
Preference number: 4 (lower is better)
Translates to: LRGGTGGEGDICNSQINFALPPG*RLVTVT
Trigger: TGTGACTGTCACCAGTCTCCACCCAGGAGGCAGCGC...GAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAAGGAATGCAGGTGCAGCCGCTaGCTCTCTGGAGCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: GGTGGEGDICNSQINFKECRCSR*LSGASS
Trigger: GCTAGAGGCTCCAGAGAGCCAGCGGCTGCACCTGCA...TTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
3UTR CAA 72 bp CCGTTGGGGATCTCGGGTAGCTCTGGACATGTGTCGTaGCGGGGAACCTCAAAGAAGTGGATGACAAATCCT +
Preference number: 4 (lower is better)
Translates to: PLGISGSSGHVS*RGTSKKWMTNP
Trigger: AGGATTTGTCATCCACTTCTTTGAGGTTCCCCGCAACGACACATGTCCAGAGCTACCCGAGATCCCCAACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp CTCAGAGGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAGAGCCCTCTGGGCCTaGGAAATTCCAGCTACAGGG +
Preference number: 4 (lower is better)
Translates to: LRGGTGGEGDICNSQINFRALWA*EIPATG
Trigger: CCCTGTAGCTGGAATTTCTCAGGCCCAGAGGGCTCT...GAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp CCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTTGAGAACCCTCAAAGAAGTGGATaGCAAATCCTTGCTGGTAAC +
Preference number: 4 (lower is better)
Translates to: PEGLVLARQDYQEVTVENPQRSG*QILAGN
Trigger: GTTACCAGCAAGGATTTGTCATCCACTTCTTTGAGG...GTTCTCAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp TTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTCACCACAAGCAGCAATaGAAACAGGCTCTTGGGAAT +
Preference number: 4 (lower is better)
Translates to: FREGLETSLRGWCWHARTHHKQQ*KQALGN
Trigger: ATTCCCAAGAGCCTGTTTGCATTGCTGCTTGTGGTG...AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp GGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAAGGAACATGCACACCCCAGATaGAGTCCTGCCCTCGGCCAT +
Preference number: 4 (lower is better)
Translates to: GGTGGEGDICNSQINFKEHAHPR*SPALGH
Trigger: ATGGCCGAGGGCAGGACTGCATCTGGGGTGTGCATG...TTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp AGGGCCCGAAGTGGGCACAGCGGTGCCAAGAAAATAGGTCACTGTGGGCATTGCGGAACCTCAAAGAAGTaGATGACAAATCCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: RARSGHSGAKKIGHCGHCGTSKK*MTNPCW
Trigger: CCAGCAAGGATTTGTCATCCACTTCTTTGAGGTTCC...GCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp AGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACCAGCTTAGGTCCCACTaGCACATGAGAATACTGGAT +
Preference number: 4 (lower is better)
Translates to: SQLSWSPHMPGRMVAMCNQLRSH*HMRILD
Trigger: ATCCAGTATTCTCATGTGCCAGTGGGACCTAAGCTG...GTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGACAAGATGTCACTCTCTaGCATGAAGGCAGGTCCTCA +
Preference number: 4 (lower is better)
Translates to: PSSGAQPELGIESLNLLGQDVTL*HEGRSS
Trigger: TGAGGACCTGCCTTCATGCCAGAGAGTGACATCTTG...TCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR GCA 90 bp AGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGATTCTTAGAGACCTTTTCAAAGTaGAGGTGCAGCCGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: SGAQPELGIESLNLLGFLETFSK*RCSRWL
Trigger: GAGCCAGCGGCTGCACCTGCACTTTGAAAAGGTCTC...TAAGAATCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp GGAGACATTTGTAACAGCCAGATAAACTTCAAGGAAGGGCTCTCCCTCCTCAGAAGAGAGCACCACGCCTaGAGAGTCTGTGATCTCCCC +
Preference number: 4 (lower is better)
Translates to: GDICNSQINFKEGLSLLRREHHA*RVCDLP
Trigger: GGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCT...TCTGAGGAGGGAGAGCCCTTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp AGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGATTCTTATTGTCCTCCTCCACATaGACACCCCAGATGCAGTCC +
Preference number: 4 (lower is better)
Translates to: SGAQPELGIESLNLLGFLLSSST*TPQMQS
Trigger: GGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAA...TAAGAATCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp AGGGCCCGAAGTGGGCACAGCGGTGCCAAGAAAATAGGTCACTGTGGGCATTGCTATTCTCTCGTCTCCTaGAAAGGAAAGAGATCCAGT +
Preference number: 4 (lower is better)
Translates to: RARSGHSGAKKIGHCGHCYSLVS*KGKRSS
Trigger: ACTGGATCTCTTTCCTTTGCAGGAGACGAGAGAATA...GCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CTCAGAGGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCCACATCTCCATACGCTaGACGTCGGGGAAAGTGGCA +
Preference number: 4 (lower is better)
Translates to: LRGGTGGEGDICNSQINFHISIR*TSGKVA
Trigger: TGCCACTTTCCCCGACGTCCAGCGTATGGAGATGTG...GAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCGGAACCTCAAAGAAGTaGATGACAAATCCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFGTSKK*MTNPCW
Trigger: CCAGCAAGGATTTGTCATCCACTTCTTTGAGGTTCC...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCGTCAGCACAAAACCCTaGTCACAGACATATTGCACA +
Preference number: 4 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFVSTKP*SQTYCT
Trigger: TGTGCAATATGTCTGTGACCAGGGTTTTGTGCTGAC...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp CTCAGAGGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCGTTCCAAGAGACACTTaGGGGCCCTGTCACTCCACT +
Preference number: 4 (lower is better)
Translates to: LRGGTGGEGDICNSQINFVPRDT*GPCHST
Trigger: AGTGGAGTGACAGGGCCCCCAAGTGTCTCTTGGAAC...GAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp ACCAAGAGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGCCACCAGCAACACCATaGCCACCAATGGTAGGAAGA +
Preference number: 4 (lower is better)
Translates to: TKRSQLRTILASGSWPCEPPATP*PPMVGR
Trigger: TCTTCCTACCATTGGTGGCCATGGTGTTGCTGGTGG...CTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp AGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCACTTTCTAGCCCCTCTTaGAGAAATTCTTCCAGAAGT +
Preference number: 4 (lower is better)
Translates to: SPHMPGRMVAMCNKCPSSLSSPS*RNSSRS
Trigger: ACTTCTGGAAGAATTTCTTCAAGAGGGGCTAGAAAG...TGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR TCA 90 bp GGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAAGGAAGCAACCAGTGGCAGGTaGGGTTGTTGCTGTAGTTCC +
Preference number: 4 (lower is better)
Translates to: GGTGGEGDICNSQINFKEATSGR*GCCCSS
Trigger: GGAACTACAGCAACAACCTCACCTGCCACTGGTTGC...TTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR TCA 90 bp GGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAAGGAAGGTCCCACTGGCACATaGGAATACTGGATCCCACCA +
Preference number: 4 (lower is better)
Translates to: GGTGGEGDICNSQINFKEGPTGT*EYWIPP
Trigger: TGGTGGGATCCAGTATTCTCATGTGCCAGTGGGACC...TTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCCAGAAAGCTCAGGGGGTTTaGATTCTAGGTTCCAAGGTT +
Preference number: 4 (lower is better)
Translates to: GFLTSATFLGPWTSAPLQKAQGV*ILGSKV
Trigger: AACCTTGGAACCTAGAATCCAAACCCCCTGAGCTTT...CTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CCA 90 bp GAAACTTCATATTCTCTCGTCTCCTGCAAAGGAAAGAGATCCAGTCTCATAAGTGGGCTGCGGATGACCTaGCCCCTCAGCAGGAACGAC +
Preference number: 4 (lower is better)
Translates to: ETSYSLVSCKGKRSSLISGLRMT*PLSRND
Trigger: GTCGTTCCTGCTGAGGGGCCAGGTCATCCGCAGCCC...ACTTATGAGACTGGATCTCTTTCCTTTGCAGGAGACGAGAGAATATGAAGTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp ATAATACATCATATGTACAAAGTGGCCTCGGTCCGGACTGAGATTGCTCCTGGGGGGTCTGACTGGAACTaGATGGTGACATCGGCCATG +
Preference number: 4 (lower is better)
Translates to: IIHHMYKVASVRTEIAPGGSDWN*MVTSAM
Trigger: CATGGCCGATGTCACCATCCAGTTCCAGTCAGACCC...CCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGATGTATTAT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
3UTR CAA 72 bp ATCATATGTACAAAGTGGCCTCGGTCCGGACTGAGATaGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCT +
Preference number: 4 (lower is better)
Translates to: IICTKWPRSGLR*LLGVLDFCHIP
Trigger: AGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CCA 90 bp GGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAAGGAAGTTGGAGTCCATGCTTaGCTAGGGGGTGTAGTACTG +
Preference number: 4 (lower is better)
Translates to: GGTGGEGDICNSQINFKEVGVHA*LGGVVL
Trigger: CAGTACTACACCCCCTAGCCAAGCATGGACTCCAAC...TTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp CTCAGAGGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCCACCACAAGCAGCAATaGAAACAGGCTCTTGGGAAT +
Preference number: 4 (lower is better)
Translates to: LRGGTGGEGDICNSQINFHHKQQ*KQALGN
Trigger: ATTCCCAAGAGCCTGTTTGCATTGCTGCTTGTGGTG...GAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR GCA 90 bp GGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAAGGAATGGTCACAGACATATTaGACAGTTGCTCCCACGGGA +
Preference number: 4 (lower is better)
Translates to: GGTGGEGDICNSQINFKEWSQTY*TVAPTG
Trigger: TCCCGTGGGAGCAACTGTGCAATATGTCTGTGACCA...TTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 90 bp CCAGGCCCAGCGGGTAGCGGGAGGCTCTGGAACCTCAGGGCTGCTTaGTGGGTGGGGCTGCGGATGACCTGGCCCCTCAGCAGGAACGAC +
Preference number: 5 (lower is better)
Translates to: PGPAGSGRLWNLRAA*WVGLRMTWPLSRND
Trigger: GTCGTTCCTGCTGAGGGGCCAGGTCATCCGCAGCCCCACCCACCAAGCAGCCCTGAGGTTCCAGAGCCTCCCGCTACCCGCTGGGCCTGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS TCA 90 bp CTCCCTGATGCCCGTGGCATGACCTTCCCCCGTGATCGGAGCCTCTaGGGAGAGTCCGTGAGCCAGGAGCGCCAGCAGCGAGGGCAGGAG +
Preference number: 5 (lower is better)
Translates to: LPDARGMTFPRDRSL*GESVSQERQQRGQE
Trigger: CTCCTGCCCTCGCTGCTGGCGCTCCTGGCTCACGGACTCTCCTCAGAGGCTCCGATCACGGGGGAAGGTCATGCCACGGGCATCAGGGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS GCA 90 bp CCCTCGGCCATAAGGCTCCGGCCAGTTTGGAGAGAGCACCACGCCTaGAGAGTCTGTGATCTCCCCGCTGCACACGGCTCGGCAGGCTGG +
Preference number: 5 (lower is better)
Translates to: PSAIRLRPVWREHHA*RVCDLPAAHGSAGW
Trigger: CCAGCCTGCCGAGCCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTATGGCCGAGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp AGGGCCCGAAGTGGGCACAGCGGTGCCAAGAAAATAGGTCACTGTGGGCATTGCGGGCGGTTGTCCTGGTaGGTGAGGCGGGGGAGGGGG +
Preference number: 5 (lower is better)
Translates to: RARSGHSGAKKIGHCGHCGRLSW*VRRGRG
Trigger: CCCCCTCCCCCGCCTCACCAACCAGGACAACCGCCC...GCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 90 bp AGGCGGGGGAGGGGGCTTGGAGTAAAGTGTGTAGGTGAGTCCGGCTaGAAGGGCAGTGCAGGCTGCGGCGCTTCCTCTCTTTCTAGCCCC +
Preference number: 5 (lower is better)
Translates to: RRGRGLGVKCVGESG*KGSAGCGASSLSSP
Trigger: GGGGCTAGAAAGAGAGGAAGCGCCGCAGCCTGCACTGCCCTTCCAGCCGGACTCACCTACACACTTTACTCCAAGCCCCCTCCCCCGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 90 bp CTCTGGAACCTCAGGGCTGCTTGGTGGGTGGGGCTGCGGATGACCTaGCCCCTCAGCAGGAACGACTGGTTAGCCAAGGGCAGTGGATCG +
Preference number: 5 (lower is better)
Translates to: LWNLRAAWWVGLRMT*PLSRNDWLAKGSGS
Trigger: CGATCCACTGCCCTTGGCTAACCAGTCGTTCCTGCTGAGGGGCCAGGTCATCCGCAGCCCCACCCACCAAGCAGCCCTGAGGTTCCAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS TCA 90 bp AAGGCTCCGGCCAGTTTGGAGAGAGCACCACGCCTGCAGAGTCTGTaGTCTCCCCGCTGCACACGGCTCGGCAGGCTGGCTCTGTCTCAT +
Preference number: 5 (lower is better)
Translates to: KAPASLERAPRLQSL*SPRCTRLGRLALSH
Trigger: ATGAGACAGAGCCAGCCTGCCGAGCCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS CCA 90 bp ACCCCAGATGCAGTCCTGCCCTCGGCCATAAGGCTCCGGCCAGTTTaGAGAGAGCACCACGCCTGCAGAGTCTGTGATCTCCCCGCTGCA +
Preference number: 5 (lower is better)
Translates to: TPDAVLPSAIRLRPV*REHHACRVCDLPAA
Trigger: TGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTATGGCCGAGGGCAGGACTGCATCTGGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp GCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTACAGGAGGTGAACCTCAGGGCTGCTaGGTGGGTGGGGCTGCGGAT +
Preference number: 5 (lower is better)
Translates to: AGGEGVGGVSSQAVCTGGEPQGC*VGGAAD
Trigger: ATCCGCAGCCCCACCCACCAAGCAGCCCTGAGGTTC...ACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS GCA 90 bp GGCCAGCTCAGCCTCTCCCTCATAGCGCAGGGCCATGCCTGCAGCTaGCCCACTGCTGTCAGTACTGAACTCCACGAAGAAGTGTCTGCC +
Preference number: 5 (lower is better)
Translates to: GQLSLSLIAQGHACS*PTAVSTELHEEVSA
Trigger: GGCAGACACTTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGGGAGAGGCTGAGCTGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140630.2
CDS-3UTR CAA 90 bp AGGGCCCGAAGTGGGCACAGCGGTGCCAAGAAAATAGGTCACTGTGGGCATTGCGAACCTCAGGGCTGCTaGGTGGGTGGGGCTGCGGAT +
Preference number: 5 (lower is better)
Translates to: RARSGHSGAKKIGHCGHCEPQGC*VGGAAD
Trigger: ATCCGCAGCCCCACCCACCAAGCAGCCCTGAGGTTC...GCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS TCA 90 bp CAGTGGCACAATGGAAGTGGGCGCTGCCTCCTGGGTGGAGACTGGTaGCAGTCACATCTCCATACGCTGGACGTCGGGGAAAGTGGCAGC +
Preference number: 5 (lower is better)
Translates to: QWHNGSGRCLLGGDW*QSHLHTLDVGESGS
Trigger: GCTGCCACTTTCCCCGACGTCCAGCGTATGGAGATGTGACTGTCACCAGTCTCCACCCAGGAGGCAGCGCCCACTTCCATTGTGCCACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS TCA 90 bp GGTGCAGCCGCTGGCTCTCTGGAGCCTCTAGCAACCAGTGGCAGGTaGGGTTGTTGCTGTAGTTCCCCGGGAAGCCAGGAGAGACAATGC +
Preference number: 5 (lower is better)
Translates to: GAAAGSLEPLATSGR*GCCCSSPGSQERQC
Trigger: GCATTGTCTCTCCTGGCTTCCCGGGGAACTACAGCAACAACCTCACCTGCCACTGGTTGCTAGAGGCTCCAGAGAGCCAGCGGCTGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS GCA 90 bp GGTAGGACGGTGCACTGCCTCATAGCGCAGGGCCATGCCTGCAGCTaGCCCACTGCTGTCAGTACTGAACTCCACGAAGAAGTGTCTGCC +
Preference number: 5 (lower is better)
Translates to: GRTVHCLIAQGHACS*PTAVSTELHEEVSA
Trigger: GGCAGACACTTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGGCAGTGCACCGTCCTACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS GCA 90 bp CCACAGGGTAGGACGGTGCACTGCCTCATAGCGCAGGGCCATGCCTaGAGCTGCCCCACTGCTGTCAGTACTGAACTCCACGAAGAAGTG +
Preference number: 5 (lower is better)
Translates to: PQGRTVHCLIAQGHA*SCPTAVSTELHEEV
Trigger: CACTTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGGCAGTGCACCGTCCTACCCTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS CCA 90 bp AGCTCAGGGGGTTTGGATTCTAGGTTCCAAGGTTTCTCCCTGGAGTaGGGCTGGGTGGGTGCTGCAGCCACGGCTGGAGTCGGACTGGTA +
Preference number: 5 (lower is better)
Translates to: SSGGLDSRFQGFSLE*GWVGAAATAGVGLV
Trigger: TACCAGTCCGACTCCAGCCGTGGCTGCAGCACCCACCCAGCCCCACTCCAGGGAGAAACCTTGGAACCTAGAATCCAAACCCCCTGAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 90 bp TGGAGTCCATGCTTGGCTAGGGGGTGTAGTACTGGGTCTGTCCTCTaGGAGCAGTGTGGGCACTGCCATACTCGGCCCTGGAGGAAGGGA +
Preference number: 5 (lower is better)
Translates to: WSPCLARGCSTGSVL*EQCGHCHTRPWRKG
Trigger: TCCCTTCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCTCCCAGAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp CTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTAGAAGTGGGTGGTGGTaGAGCAGCTTGAGGGTAGGG +
Preference number: 5 (lower is better)
Translates to: LVAGPVRGTLLSSQLSWSRSGWW*SSLRVG
Trigger: CCCTACCCTCAAGCTGCTCAACCACCACCCACTTCT...ACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp AGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGAACCTCAGGGCTGCTaGGTGGGTGGGGCTGCGGAT +
Preference number: 5 (lower is better)
Translates to: SPHMPGRMVAMCNKCPSSEPQGC*VGGAAD
Trigger: ATCCGCAGCCCCACCCACCAAGCAGCCCTGAGGTTC...TGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCGCTCCCACGGGAAACTaGGGGCTGGATATGAGGCGT +
Preference number: 5 (lower is better)
Translates to: REGLETSLRGWCWHARTTAPTGN*GLDMRR
Trigger: ACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGC...GGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 90 bp GCTGCCTCCTGGGTGGAGACTGGTGACAGTCACATCTCCATACGCTaGACGTCGGGGAAAGTGGCAGCTCAGGAGATAGGCTTGGTAGCG +
Preference number: 5 (lower is better)
Translates to: AASWVETGDSHISIR*TSGKVAAQEIGLVA
Trigger: CGCTACCAAGCCTATCTCCTGAGCTGCCACTTTCCCCGACGTCCAGCGTATGGAGATGTGACTGTCACCAGTCTCCACCCAGGAGGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS CCA 90 bp CTTGAGCTGGTAGCCAGTGGCACAATGGAAGTGGGCGCTGCCTCCTaGGTGGAGACTGGTGACAGTCACATCTCCATACGCTGGACGTCG +
Preference number: 5 (lower is better)
Translates to: LELVASGTMEVGAAS*VETGDSHISIRWTS
Trigger: CGACGTCCAGCGTATGGAGATGTGACTGTCACCAGTCTCCACCCAGGAGGCAGCGCCCACTTCCATTGTGCCACTGGCTACCAGCTCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp GTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGAAGAGAAGTGGGTGGTGGTaGAGCAGCTTGAGGGTAGGG +
Preference number: 5 (lower is better)
Translates to: VAGRGNMVSGSEEGLVGKRSGWW*SSLRVG
Trigger: CCCTACCCTCAAGCTGCTCAACCACCACCCACTTCT...CTTCCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp GTCCCAGCTACGTTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGGGCTGGGTGGCATaGAGACAGGTGAGGAACCTG +
Preference number: 5 (lower is better)
Translates to: VPATFYPRQMPLNPKKGPKGWVA*RQVRNL
Trigger: CAGGTTCCTCACCTGTCTCAATGCCACCCAGCCCTT...CGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp ACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCGCTCCCACGGGAAACTaGGGGCTGGATATGAGGCGT +
Preference number: 5 (lower is better)
Translates to: TCQAGWWPCVTSAPPQSAAPTGN*GLDMRR
Trigger: ACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGC...GGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp CGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACGCCCTGTCACTCCACTaGGGACTGCCTGCTTGCCGA +
Preference number: 5 (lower is better)
Translates to: REYPSSGAQPELGIESLNALSLH*GLPACR
Trigger: TCGGCAAGCAGGCAGTCCCAAGTGGAGTGACAGGGC...GTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp GTCCCAGCTACGTTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGTGTTCCAAGAGACACTaGGGGGCCCTGTCACTCCAC +
Preference number: 5 (lower is better)
Translates to: VPATFYPRQMPLNPKKGPCSKRH*GALSLH
Trigger: GTGGAGTGACAGGGCCCCCAAGTGTCTCTTGGAACA...CGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp GCTCCTCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGAGGCGGCAGGTGCCTaGGCAACAGCCCTACAGATG +
Preference number: 5 (lower is better)
Translates to: APLQNVAALSWHAITQWQEAAGA*ATALQM
Trigger: CATCTGTAGGGCTGTTGCCAAGGCACCTGCCGCCTC...CTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000646.14
CDS GCA 90 bp AGGGGGTGTAGTACTGGGTCTGTCCTCTGGGAGCAGTGTGGGCACTaGCATACTCGGCCCTGGAGGAAGGGACGATGTGATAGAAAGCTC +
Preference number: 5 (lower is better)
Translates to: RGCSTGSVLWEQCGH*HTRPWRKGRCDRKL
Trigger: GAGCTTTCTATCACATCGTCCCTTCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCTCCCAGAGGACAGACCCAGTACTACACCCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS GCA 90 bp CCAAGGTCTGTCCATGTCTCCAGGACCCTCCTGAGTTGGAGTCCATaGTTGGCTAGGGGGTGTAGTACTGGGTCTGTCCTCTGGGAGCAG +
Preference number: 5 (lower is better)
Translates to: PRSVHVSRTLLSWSP*LARGCSTGSVLWEQ
Trigger: CTGCTCCCAGAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGACATGGACAGACCTTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS GCA 90 bp ATGTCCTTGCTGGAAGGCCTCATAGCGCAGGGCCATGCCTGCAGCTaGCCCACTGCTGTCAGTACTGAACTCCACGAAGAAGTGTCTGCC +
Preference number: 5 (lower is better)
Translates to: MSLLEGLIAQGHACS*PTAVSTELHEEVSA
Trigger: GGCAGACACTTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGGCCTTCCAGCAAGGACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 90 bp GGGTCTGTCCTCTGGGAGCAGTGTGGGCACTGCCATACTCGGCCCTaGAGGAAGGGACGATGTGATAGAAAGCTCAGGGGGTTTGGATTC +
Preference number: 5 (lower is better)
Translates to: GSVLWEQCGHCHTRP*RKGRCDRKLRGFGF
Trigger: GAATCCAAACCCCCTGAGCTTTCTATCACATCGTCCCTTCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCTCCCAGAGGACAGACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp ATAATACATCATATGTACAAAGTGGCCTCGGTCCGGACTGAGATTGCTCCTGGGGGGCGGTTGTCCTGGTaGGTGAGGCGGGGGAGGGGG +
Preference number: 5 (lower is better)
Translates to: IIHHMYKVASVRTEIAPGGRLSW*VRRGRG
Trigger: CCCCCTCCCCCGCCTCACCAACCAGGACAACCGCCC...CCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGATGTATTAT
59% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp CTGAGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACGTAAAGACGGGGCGGTaGTCCTGGTTGGTGAGGCGG +
Preference number: 5 (lower is better)
Translates to: LRLLLGVLDFCHIPGSLDVKTGR*SWLVRR
Trigger: CCGCCTCACCAACCAGGACAACCGCCCCGTCTTTAC...GTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp CGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTGGGACTGCCTGCTaGCCGATCATGGCAGGTGAG +
Preference number: 5 (lower is better)
Translates to: REYPSSGAQPELGIESLNLGTAC*PIMAGE
Trigger: CTCACCTGCCATGATCGGCAAGCAGGCAGTCCCAAG...GTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp TGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTGCTCCTCTCGCCCTGTCACTCCACTaGGGACTGCCTGCTTGCCGA +
Preference number: 5 (lower is better)
Translates to: WGFLTSATFLGPWTSAPLALSLH*GLPACR
Trigger: TCGGCAAGCAGGCAGTCCCAAGTGGAGTGACAGGGC...GAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp ATGCCGGAGAGCCGTAGGGTGTCCTGCTTTGGTGTGGAGCGTGAGTATCCATCCTGTTCCAAGAGACACTaGGGGGCCCTGTCACTCCAC +
Preference number: 5 (lower is better)
Translates to: MPESRRVSCFGVEREYPSCSKRH*GALSLH
Trigger: GTGGAGTGACAGGGCCCCCAAGTGTCTCTTGGAACA...GGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp AGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACTGTCCAGGCACGCATTaGATGCTGGCCTGGCCCTTC +
Preference number: 5 (lower is better)
Translates to: SQLSWSPHMPGRMVAMCNCPGTH*MLAWPF
Trigger: GAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACA...GTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS TCA 90 bp TCAGTACATCCCCAGAGCCTATGCGCAGCACTCGGATGTCCAGCATaGTGCGCTTGTCCTCCTCCACATGCACACCCCAGATGCAGTCCT +
Preference number: 5 (lower is better)
Translates to: SVHPQSLCAALGCPA*CACPPPHAHPRCSP
Trigger: AGGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGACATCCGAGTGCTGCGCATAGGCTCTGGGGATGTACTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
CDS CCA 90 bp CTCTGGAACCCAAGGTCTGTCCATGTCTCCAGGACCCTCCTGAGTTaGAGTCCATGCTTGGCTAGGGGGTGTAGTACTGGGTCTGTCCTC +
Preference number: 5 (lower is better)
Translates to: LWNPRSVHVSRTLLS*SPCLARGCSTGSVL
Trigger: GAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGACATGGACAGACCTTGGGTTCCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp GTCCCAGCTACGTTCTACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAGTTGGAGTCCATGCTaGGCTAGGGGGTGTAGTACT +
Preference number: 5 (lower is better)
Translates to: VPATFYPRQMPLNPKKGPSWSPC*ARGCST
Trigger: AGTACTACACCCCCTAGCCAAGCATGGACTCCAACT...CGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp ACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGGGGCACCCTGCTGTCAAGTCAAAGGGCTGGGTGGCATaGAGACAGGTGAGGAACCTG +
Preference number: 5 (lower is better)
Translates to: TILASGSWPCEGHPAVKSKGWVA*RQVRNL
Trigger: CAGGTTCCTCACCTGTCTCAATGCCACCCAGCCCTT...TGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp GTCACTGTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAAATGCAAACAGGCTCTaGGGAATCCCAAAAGGGCTG +
Preference number: 5 (lower is better)
Translates to: VTVGIAGGEGVGGVSSQANANRL*GIPKGL
Trigger: CAGCCCTTTTGGGATTCCCAAGAGCCTGTTTGCATT...TGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp TACCCGAGGCAGATGCCCCTGAATCCAAAGAAGGGCCCGAAGTGGGCACAGCGGTCCACGTTATTTCCATaGCGGATGATGAGCCTGTCG +
Preference number: 5 (lower is better)
Translates to: YPRQMPLNPKKGPKWAQRSTLFP*RMMSLS
Trigger: CGACAGGCTCATCATCCGCAATGGAAATAACGTGGA...CCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp TGTGAGGGGCACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGGCACTGCTGCTGAAGTaGCCGTATTTGACAAAGGGC +
Preference number: 5 (lower is better)
Translates to: CEGHPAVKSALLESSHARALLLK*PYLTKG
Trigger: GCCCTTTGTCAAATACGGCAACTTCAGCAGCAGTGC...CCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp AGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCGCACTGCTGCTGAAGTaGCCGTATTTGACAAAGGGC +
Preference number: 5 (lower is better)
Translates to: REGLETSLRGWCWHARTTALLLK*PYLTKG
Trigger: GCCCTTTGTCAAATACGGCAACTTCAGCAGCAGTGC...GGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp CACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTTCCAGCATGATGCGCTaGTCCTCCTCCACATGCACA +
Preference number: 5 (lower is better)
Translates to: HPAVKSALLESSHARQDGSSMMR*SSSTCT
Trigger: TGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGA...ACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp TTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTATGGAGGTAAAGAGCTaGAAGTGGCCACGGGGCCCT +
Preference number: 5 (lower is better)
Translates to: FREGLETSLRGWCWHARTMEVKS*KWPRGP
Trigger: AGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCAT...AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp ACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGGAGGGACTGGTGGGGTCTGGACATGTGTCGTaGCGGGGAACCTCAAAGAAG +
Preference number: 5 (lower is better)
Translates to: TVAGRGNMVSGSEEGLVGSGHVS*RGTSKK
Trigger: CTTCTTTGAGGTTCCCCGCAACGACACATGTCCAGA...CCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS GCA 90 bp ATAGCAATGTCCTTGCTGGAAGGCCTCATAGCGCAGGGCCATGCCTaGAGCTGCCCCACTGCTGTCAGTACTGAACTCCACGAAGAAGTG +
Preference number: 5 (lower is better)
Translates to: IAMSLLEGLIAQGHA*SCPTAVSTELHEEV
Trigger: CACTTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGGCCTTCCAGCAAGGACATTGCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 90 bp TGCTGTAGTTCCCCGGGAAGCCAGGAGAGACAATGCGGCCAGTGGTaGCATTCCGAATCACTCCACCACAAGCAGCAATGCAAACAGGCT +
Preference number: 5 (lower is better)
Translates to: CCSSPGSQERQCGQW*HSESLHHKQQCKQA
Trigger: AGCCTGTTTGCATTGCTGCTTGTGGTGGAGTGATTCGGAATGCCACCACTGGCCGCATTGTCTCTCCTGGCTTCCCGGGGAACTACAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp CCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAAAGTTGGAGTCCATGCTaGGCTAGGGGGTGTAGTACT +
Preference number: 5 (lower is better)
Translates to: PGRMVAMCNKCPSSVSLQSWSPC*ARGCST
Trigger: AGTACTACACCCCCTAGCCAAGCATGGACTCCAACT...TTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp GAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGGCTCAGGAGATAGGCTaGGTAGCGGAAATGGAAAGT +
Preference number: 5 (lower is better)
Translates to: EGLETSLRGWCWHARTTKAQEIG*VAEMES
Trigger: ACTTTCCATTTCCGCTACCAAGCCTATCTCCTGAGC...CTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp GAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAATGCAAACAGGCTCTaGGGAATCCCAAAAGGGCTG +
Preference number: 5 (lower is better)
Translates to: EGLETSLRGWCWHARTTKNANRL*GIPKGL
Trigger: CAGCCCTTTTGGGATTCCCAAGAGCCTGTTTGCATT...CTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp CGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACTCCAGCATGATGCGCTaGTCCTCCTCCACATGCACA +
Preference number: 5 (lower is better)
Translates to: REYPSSGAQPELGIESLNSSMMR*SSSTCT
Trigger: TGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGA...GTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp CTGGCATGCCATAACACAGTGGCAGGAAGGGGGAACATGGTAAGTGGCTCAGAGATGGAGGTAAAGAGCTaGAAGTGGCCACGGGGCCCT +
Preference number: 5 (lower is better)
Translates to: LACHNTVAGRGNMVSGSEMEVKS*KWPRGP
Trigger: AGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCAT...CTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGTGTTATGGCATGCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp ACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTACCAAGAGGTCACAGTTGAGACATATTGCACAGTaGCTCCCACGGGAAACTTGG +
Preference number: 5 (lower is better)
Translates to: TSLRGWCWHARTTKRSQLRHIAQ*LPRETW
Trigger: CCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTCT...CAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp GTGGGCATTGCAGGCGGGGAAGGGGTTGGTGGTGTCTCTTCCCAGGCAGTATGTATGGCACGGCTTGAATaGTTCCAAGAGACACTTGGG +
Preference number: 5 (lower is better)
Translates to: VGIAGGEGVGGVSSQAVCMARLE*FQETLG
Trigger: CCCAAGTGTCTCTTGGAACAATTCAAGCCGTGCCAT...ACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 90 bp AATGGTTCCCTCGACACCAAGCCCTGTGGTCTTAGACATGACCTCTaGAACCCAAGGTCTGTCCATGTCTCCAGGACCCTCCTGAGTTGG +
Preference number: 5 (lower is better)
Translates to: NGSLDTKPCGLRHDL*NPRSVHVSRTLLSW
Trigger: CCAACTCAGGAGGGTCCTGGAGACATGGACAGACCTTGGGTTCCAGAGGTCATGTCTAAGACCACAGGGCTTGGTGTCGAGGGAACCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS CCA 90 bp TGTTGCTGTAGTTCCCCGGGAAGCCAGGAGAGACAATGCGGCCAGTaGTGGCATTCCGAATCACTCCACCACAAGCAGCAATGCAAACAG +
Preference number: 5 (lower is better)
Translates to: CCCSSPGSQERQCGQ*WHSESLHHKQQCKQ
Trigger: CTGTTTGCATTGCTGCTTGTGGTGGAGTGATTCGGAATGCCACCACTGGCCGCATTGTCTCTCCTGGCTTCCCGGGGAACTACAGCAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp CCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAAGCTCAGGAGATAGGCTaGGTAGCGGAAATGGAAAGT +
Preference number: 5 (lower is better)
Translates to: PGRMVAMCNKCPSSVSLQAQEIG*VAEMES
Trigger: ACTTTCCATTTCCGCTACCAAGCCTATCTCCTGAGC...TTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp AGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCAAGGGCTGGGTGGCATaGAGACAGGTGAGGAACCTG +
Preference number: 5 (lower is better)
Translates to: RLLLGVLDFCHIPGSLDIKGWVA*RQVRNL
Trigger: CAGGTTCCTCACCTGTCTCAATGCCACCCAGCCCTT...GATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp AGGGCCCGAAGTGGGCACAGCGGTGCCAAGAAAATAGGTCACTGTGGGCATTGCTCCACGTTATTTCCATaGCGGATGATGAGCCTGTCG +
Preference number: 5 (lower is better)
Translates to: RARSGHSGAKKIGHCGHCSTLFP*RMMSLS
Trigger: CGACAGGCTCATCATCCGCAATGGAAATAACGTGGA...GCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp TTTAGAGAGGGACTAGAAACCTCCCTGAGGGGCTGGTGTTGGCACGCCAGGACTCTCATAGCAATGTCCTaGCTGGAAGGCCTCATAGCG +
Preference number: 5 (lower is better)
Translates to: FREGLETSLRGWCWHARTLIAMS*LEGLIA
Trigger: CGCTATGAGGCCTTCCAGCAAGGACATTGCTATGAG...AGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp AGTCCTCACATGCCAGGCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCACTCATAGCAATGTCCTaGCTGGAAGGCCTCATAGCG +
Preference number: 5 (lower is better)
Translates to: SPHMPGRMVAMCNKCPSSLIAMS*LEGLIA
Trigger: CGCTATGAGGCCTTCCAGCAAGGACATTGCTATGAG...TGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp GAGCGTGAGTATCCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAGACATATTGCACAGTaGCTCCCACGGGAAACTTGG +
Preference number: 5 (lower is better)
Translates to: EREYPSSGAQPELGIESLRHIAQ*LPRETW
Trigger: CCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTCT...CAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp CCATCCAGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGACTGGTCACAGACATATaGCACAGTTGCTCCCACGGG +
Preference number: 5 (lower is better)
Translates to: PSSGAQPELGIESLNLLGLVTDI*HSCSHG
Trigger: CCCGTGGGAGCAACTGTGCAATATGTCTGTGACCAG...TCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp TCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGAAGGCTGGTCACAGACATATaGCACAGTTGCTCCCACGGG +
Preference number: 5 (lower is better)
Translates to: SPECSCPLLACHNTVAGRLVTDI*HSCSHG
Trigger: CCCGTGGGAGCAACTGTGCAATATGTCTGTGACCAG...CCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS TCA 90 bp GACAGTAGTGGTAATGATGGTGGTAGTGGTCTCTTCGTCATCCCCTaGAGCTGTGGAGGTGGCAATGGTTCCCTCGACACCAAGCCCTGT +
Preference number: 5 (lower is better)
Translates to: DSSGNDGGSGLFVIP*SCGGGNGSLDTKPC
Trigger: ACAGGGCTTGGTGTCGAGGGAACCATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAGACCACTACCACCATCATTACCACTACTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp AGATTGCTCCTGGGGGTTCTTGACTTCTGCCACATTCCTGGGTCCTTGGACATCTCCAGCATGATGCGCTaGTCCTCCTCCACATGCACA +
Preference number: 5 (lower is better)
Translates to: RLLLGVLDFCHIPGSLDISSMMR*SSSTCT
Trigger: TGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGA...GATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp GCAGGATGGTGGCCATGTGTAACAAGTGCCCCTCCTCAGTCAGCCTGCAACTTCATGGCACGGCTTGAATaGTTCCAAGAGACACTTGGG +
Preference number: 5 (lower is better)
Translates to: AGWWPCVTSAPPQSACNFMARLE*FQETLG
Trigger: CCCAAGTGTCTCTTGGAACAATTCAAGCCGTGCCAT...GAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp CTCAGAGGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCTGTCCAGGCACGCATTaGATGCTGGCCTGGCCCTTC +
Preference number: 5 (lower is better)
Translates to: LRGGTGGEGDICNSQINFCPGTH*MLAWPF
Trigger: GAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACA...GAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 90 bp GCATTCCGAATCACTCCACCACAAGCAGCAATGCAAACAGGCTCTTaGGAATCCCAAAAGGGCTGGGTGGCATTGAGACAGGTGAGGAAC +
Preference number: 5 (lower is better)
Translates to: AFRITPPQAAMQTGS*ESQKGWVALRQVRN
Trigger: GTTCCTCACCTGTCTCAATGCCACCCAGCCCTTTTGGGATTCCCAAGAGCCTGTTTGCATTGCTGCTTGTGGTGGAGTGATTCGGAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp GGAGACATTTGTAACAGCCAGATAAACTTCAAGGAAGGGCTCTCCCTCCTCAGACTTGGGACTGCCTGCTaGCCGATCATGGCAGGTGAG +
Preference number: 5 (lower is better)
Translates to: GDICNSQINFKEGLSLLRLGTAC*PIMAGE
Trigger: CTCACCTGCCATGATCGGCAAGCAGGCAGTCCCAAG...TCTGAGGAGGGAGAGCCCTTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp ACCAAGAGGTCACAGTTGAGAACAATTTTGGCCTCTGGTAGCTGGCCCTGTGAGAGGCCATGGCACGGCTaGAATTGTTCCAAGAGACAC +
Preference number: 5 (lower is better)
Translates to: TKRSQLRTILASGSWPCERPWHG*NCSKRH
Trigger: GTGTCTCTTGGAACAATTCAAGCCGTGCCATGGCCT...CTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp CACCCTGCTGTCAAGTCAGCTCTCCTGGAGTCCTCACATGCCAGGCAGGATGGTCTCCAGTCTCATAAGTaGGATTGTCAAATGCTGACT +
Preference number: 5 (lower is better)
Translates to: HPAVKSALLESSHARQDGLQSHK*DCQMLT
Trigger: AGTCAGCATTTGACAATCCAACTTATGAGACTGGAG...ACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000646.14
CDS TCA 90 bp TCTCTCCAGTCTCATAAGTTGGATTGTCAAATGCTGACTCTACCGTaGTGCGGTTATAGGGGCGAGGATGAGTTCGGGGAAGTTGCAGGG +
Preference number: 5 (lower is better)
Translates to: SLQSHKLDCQMLTLP*CGYRGEDEFGEVAG
Trigger: CCCTGCAACTTCCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000646.14
CDS-3UTR CAA 90 bp AATCATCACCTCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTGAGCCTTAGTTGGAGTCCATGCTaGGCTAGGGGGTGTAGTACT +
Preference number: 5 (lower is better)
Translates to: NHHLPGQGRRLNCPILSLSWSPC*ARGCST
Trigger: AGTACTACACCCCCTAGCCAAGCATGGACTCCAACT...AAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp AGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGATTCTTATCTGGACATGTGTCGTaGCGGGGAACCTCAAAGAAG +
Preference number: 5 (lower is better)
Translates to: SGAQPELGIESLNLLGFLSGHVS*RGTSKK
Trigger: CTTCTTTGAGGTTCCCCGCAACGACACATGTCCAGA...TAAGAATCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp AATCATCACCTCCCAGGACAGGGCAGAAGGCTTAACTGTCCAATTCTGAGCCTTAGGCCATGGCACGGCTaGAATTGTTCCAAGAGACAC +
Preference number: 5 (lower is better)
Translates to: NHHLPGQGRRLNCPILSLRPWHG*NCSKRH
Trigger: GTGTCTCTTGGAACAATTCAAGCCGTGCCATGGCCT...AAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS-3UTR CAA 90 bp CTCAGAGGAGGGACTGGTGGGGAAGGAGACATTTGTAACAGCCAGATAAACTTCAATGCAAACAGGCTCTaGGGAATCCCAAAAGGGCTG +
Preference number: 5 (lower is better)
Translates to: LRGGTGGEGDICNSQINFNANRL*GIPKGL
Trigger: CAGCCCTTTTGGGATTCCCAAGAGCCTGTTTGCATT...GAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp AGTGGGGCCCAGCCTGAGCTTGGAATAGAGTCCCTGAACCTTTTAGGATTCTTATCCACGTTATTTCCATaGCGGATGATGAGCCTGTCG +
Preference number: 5 (lower is better)
Translates to: SGAQPELGIESLNLLGFLSTLFP*RMMSLS
Trigger: CGACAGGCTCATCATCCGCAATGGAAATAACGTGGA...TAAGAATCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS TCA 90 bp ATATTCTCTCGTCTCTCCAGTCTCATAAGTTGGATTGTCAAATGCTaGCTCTACCGTGATGCGGTTATAGGGGCGAGGATGAGTTCGGGG +
Preference number: 5 (lower is better)
Translates to: IFSRLSSLISWIVKC*LYRDAVIGARMSSG
Trigger: CCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGAGAGACGAGAGAATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000646.14
CDS-3UTR CAA 90 bp ATAATACATCATATGTACAAAGTGGCCTCGGTCCGGACTGAGATTGCTCCTGGGGCTCAGGAGATAGGCTaGGTAGCGGAAATGGAAAGT +
Preference number: 5 (lower is better)
Translates to: IIHHMYKVASVRTEIAPGAQEIG*VAEMES
Trigger: ACTTTCCATTTCCGCTACCAAGCCTATCTCCTGAGC...CCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGATGTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS-3UTR CAA 90 bp TCTCCAGAATGTAGCTGCCCTCTCCTGGCATGCCATAACACAGTGGCAGGAAGGATCCAGTCTCATAAGTaGGATTGTCAAATGCTGACT +
Preference number: 5 (lower is better)
Translates to: SPECSCPLLACHNTVAGRIQSHK*DCQMLT
Trigger: AGTCAGCATTTGACAATCCAACTTATGAGACTGGAT...CCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093995.10
CDS TCA 72 bp GCCCGTGGCATGACCTTCCCCCGTGATCGGAGCCTCTaGGGAGAGTCCGTGAGCCAGGAGCGCCAGCAGCGA +
Preference number: 6 (lower is better)
Translates to: ARGMTFPRDRSL*GESVSQERQQR
Trigger: TCGCTGCTGGCGCTCCTGGCTCACGGACTCTCCTCAGAGGCTCCGATCACGGGGGAAGGTCATGCCACGGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS TCA 72 bp GAGGCGGGGGAGGGGGCTTGGAGTAAAGTGTGTAGGTaGGTCCGGCTGGAAGGGCAGTGCAGGCTGCGGCGC +
Preference number: 6 (lower is better)
Translates to: EAGEGAWSKVCR*VRLEGQCRLRR
Trigger: GCGCCGCAGCCTGCACTGCCCTTCCAGCCGGACTCACCTACACACTTTACTCCAAGCCCCCTCCCCCGCCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS TCA 72 bp GGTAGGGGCTGTGGTGACGAAGTGGACGCCTCGGTCTaGCTGCTCAGGTGTAGGGGCTGCGGTCAGCTCCCC +
Preference number: 6 (lower is better)
Translates to: GRGCGDEVDASV*LLRCRGCGQLP
Trigger: GGGGAGCTGACCGCAGCCCCTACACCTGAGCAGTCAGACCGAGGCGTCCACTTCGTCACCACAGCCCCTACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 72 bp GGCGGCAGGTGCCTTGGCAACAGCCCTACAGATGGGTaGTGGGTCACTCCAATGCGAGGGGTGTCCAGGCAC +
Preference number: 6 (lower is better)
Translates to: GGRCLGNSPTDG*WVTPMRGVSRH
Trigger: GTGCCTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTGTTGCCAAGGCACCTGCCGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000646.14
CDS CCA 72 bp GGCAGGTGCCTTGGCAACAGCCCTACAGATGGGTGGTaGGTCACTCCAATGCGAGGGGTGTCCAGGCACGCA +
Preference number: 6 (lower is better)
Translates to: GRCLGNSPTDGW*VTPMRGVSRHA
Trigger: TGCGTGCCTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTGTTGCCAAGGCACCTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000646.14
CDS CCA 72 bp TGGAGGCGGCAGGTGCCTTGGCAACAGCCCTACAGATaGGTGGTGGGTCACTCCAATGCGAGGGGTGTCCAG +
Preference number: 6 (lower is better)
Translates to: WRRQVPWQQPYR*VVGHSNARGVQ
Trigger: CTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTGTTGCCAAGGCACCTGCCGCCTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000646.14
CDS CAA 90 bp TCCCCAGAGCCTATGCGCAGCACTCGGATGTCCAGCATGATGCGCTaGTCCTCCTCCACATGCACACCCCAGATGCAGTCCTGCCCTCGG +
Preference number: 6 (lower is better)
Translates to: SPEPMRSTRMSSMMR*SSSTCTPQMQSCPR
Trigger: CCGAGGGCAGGACTGCATCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGACATCCGAGTGCTGCGCATAGGCTCTGGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
CDS GCA 72 bp ATAAGGCTCCGGCCAGTTTGGAGAGAGCACCACGCCTaGAGAGTCTGTGATCTCCCCGCTGCACACGGCTCG +
Preference number: 6 (lower is better)
Translates to: IRLRPVWREHHA*RVCDLPAAHGS
Trigger: CGAGCCGTGTGCAGCGGGGAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS GCA 72 bp AGGACGGTGCACTGCCTCATAGCGCAGGGCCATGCCTaGAGCTGCCCCACTGCTGTCAGTACTGAACTCCAC +
Preference number: 6 (lower is better)
Translates to: RTVHCLIAQGHA*SCPTAVSTELH
Trigger: GTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGGCAGTGCACCGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS CCA 72 bp CAGGGGGTTTGGATTCTAGGTTCCAAGGTTTCTCCCTaGAGTGGGGCTGGGTGGGTGCTGCAGCCACGGCTG +
Preference number: 6 (lower is better)
Translates to: QGVWILGSKVSP*SGAGWVLQPRL
Trigger: CAGCCGTGGCTGCAGCACCCACCCAGCCCCACTCCAGGGAGAAACCTTGGAACCTAGAATCCAAACCCCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 72 bp TGCTTGGCTAGGGGGTGTAGTACTGGGTCTGTCCTCTaGGAGCAGTGTGGGCACTGCCATACTCGGCCCTGG +
Preference number: 6 (lower is better)
Translates to: CLARGCSTGSVL*EQCGHCHTRPW
Trigger: CCAGGGCCGAGTATGGCAGTGCCCACACTGCTCCCAGAGGACAGACCCAGTACTACACCCCCTAGCCAAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 72 bp AGTAGAAACAGTCCAGGCCAACATCAGAGGGTGAGCTaGGGGCCGTGGGGGAATCCAGAGAGCCCTCTGGGC +
Preference number: 6 (lower is better)
Translates to: SRNSPGQHQRVS*GPWGNPESPLG
Trigger: GCCCAGAGGGCTCTCTGGATTCCCCCACGGCCCCCAGCTCACCCTCTGATGTTGGCCTGGACTGTTTCTACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS CCA 72 bp GCAGTCCTGCCCTCGGCCATAAGGCTCCGGCCAGTTTaGAGAGAGCACCACGCCTGCAGAGTCTGTGATCTC +
Preference number: 6 (lower is better)
Translates to: AVLPSAIRLRPV*REHHACRVCDL
Trigger: GAGATCACAGACTCTGCAGGCGTGGTGCTCTCTCCAAACTGGCCGGAGCCTTATGGCCGAGGGCAGGACTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS TCA 72 bp CCCCAGAGCCTATGCGCAGCACTCGGATGTCCAGCATaGTGCGCTTGTCCTCCTCCACATGCACACCCCAGA +
Preference number: 6 (lower is better)
Translates to: PQSLCAALGCPA*CACPPPHAHPR
Trigger: TCTGGGGTGTGCATGTGGAGGAGGACAAGCGCATCATGCTGGACATCCGAGTGCTGCGCATAGGCTCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
CDS GCA 72 bp TCCTTGCTGGAAGGCCTCATAGCGCAGGGCCATGCCTaGAGCTGCCCCACTGCTGTCAGTACTGAACTCCAC +
Preference number: 6 (lower is better)
Translates to: SLLEGLIAQGHA*SCPTAVSTELH
Trigger: GTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGGCCTTCCAGCAAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 72 bp AGGGGGCTTGGAGTAAAGTGTGTAGGTGAGTCCGGCTaGAAGGGCAGTGCAGGCTGCGGCGCTTCCTCTCTT +
Preference number: 6 (lower is better)
Translates to: RGLGVKCVGESG*KGSAGCGASSL
Trigger: AAGAGAGGAAGCGCCGCAGCCTGCACTGCCCTTCCAGCCGGACTCACCTACACACTTTACTCCAAGCCCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 72 bp GGTTTGGATTCTAGGTTCCAAGGTTTCTCCCTGGAGTaGGGCTGGGTGGGTGCTGCAGCCACGGCTGGAGTC +
Preference number: 6 (lower is better)
Translates to: GLDSRFQGFSLE*GWVGAAATAGV
Trigger: GACTCCAGCCGTGGCTGCAGCACCCACCCAGCCCCACTCCAGGGAGAAACCTTGGAACCTAGAATCCAAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 72 bp CTCTGGGAGCAGTGTGGGCACTGCCATACTCGGCCCTaGAGGAAGGGACGATGTGATAGAAAGCTCAGGGGG +
Preference number: 6 (lower is better)
Translates to: LWEQCGHCHTRP*RKGRCDRKLRG
Trigger: CCCCCTGAGCTTTCTATCACATCGTCCCTTCCTCCAGGGCCGAGTATGGCAGTGCCCACACTGCTCCCAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CAA 72 bp TGGACGTCGGGGAAAGTGGCAGCTCAGGAGATAGGCTaGGTAGCGGAAATGGAAAGTGCCAGGCCCAGCGGG +
Preference number: 6 (lower is better)
Translates to: WTSGKVAAQEIG*VAEMESARPSG
Trigger: CCCGCTGGGCCTGGCACTTTCCATTTCCGCTACCAAGCCTATCTCCTGAGCTGCCACTTTCCCCGACGTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS TCA 72 bp AATGGAAGTGGGCGCTGCCTCCTGGGTGGAGACTGGTaGCAGTCACATCTCCATACGCTGGACGTCGGGGAA +
Preference number: 6 (lower is better)
Translates to: NGSGRCLLGGDW*QSHLHTLDVGE
Trigger: TTCCCCGACGTCCAGCGTATGGAGATGTGACTGTCACCAGTCTCCACCCAGGAGGCAGCGCCCACTTCCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS GCA 72 bp CTGGAAGGCCTCATAGCGCAGGGCCATGCCTGCAGCTaGCCCACTGCTGTCAGTACTGAACTCCACGAAGAA +
Preference number: 6 (lower is better)
Translates to: LEGLIAQGHACS*PTAVSTELHEE
Trigger: TTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGGCCTTCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS GCA 72 bp AGCCTCTCCCTCATAGCGCAGGGCCATGCCTGCAGCTaGCCCACTGCTGTCAGTACTGAACTCCACGAAGAA +
Preference number: 6 (lower is better)
Translates to: SLSLIAQGHACS*PTAVSTELHEE
Trigger: TTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGGGAGAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140630.2
CDS GCA 72 bp GTGCACTGCCTCATAGCGCAGGGCCATGCCTGCAGCTaGCCCACTGCTGTCAGTACTGAACTCCACGAAGAA +
Preference number: 6 (lower is better)
Translates to: VHCLIAQGHACS*PTAVSTELHEE
Trigger: TTCTTCGTGGAGTTCAGTACTGACAGCAGTGGGGCAGCTGCAGGCATGGCCCTGCGCTATGAGGCAGTGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS CCA 72 bp CCAGTGGCACAATGGAAGTGGGCGCTGCCTCCTGGGTaGAGACTGGTGACAGTCACATCTCCATACGCTGGA +
Preference number: 6 (lower is better)
Translates to: PVAQWKWALPPG*RLVTVTSPYAG
Trigger: TCCAGCGTATGGAGATGTGACTGTCACCAGTCTCCACCCAGGAGGCAGCGCCCACTTCCATTGTGCCACTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS CCA 72 bp GTAGCCAGTGGCACAATGGAAGTGGGCGCTGCCTCCTaGGTGGAGACTGGTGACAGTCACATCTCCATACGC +
Preference number: 6 (lower is better)
Translates to: VASGTMEVGAAS*VETGDSHISIR
Trigger: GCGTATGGAGATGTGACTGTCACCAGTCTCCACCCAGGAGGCAGCGCCCACTTCCATTGTGCCACTGGCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS CAA 72 bp GAGTCGTACACCGGCGGGGCCTCCACGTTATTTCCATaGCGGATGATGAGCCTGTCGTCGTCTTCTGCCAGG +
Preference number: 6 (lower is better)
Translates to: ESYTGGASTLFP*RMMSLSSSSAR
Trigger: CCTGGCAGAAGACGACGACAGGCTCATCATCCGCAATGGAAATAACGTGGAGGCCCCGCCGGTGTACGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS CAA 90 bp CTCGGCCCTGGAGGAAGGGACGATGTGATAGAAAGCTCAGGGGGTTaGGATTCTAGGTTCCAAGGTTTCTCCCTGGAGTGGGGCTGGGTG +
Preference number: 6 (lower is better)
Translates to: LGPGGRDDVIESSGG*DSRFQGFSLEWGWV
Trigger: CACCCAGCCCCACTCCAGGGAGAAACCTTGGAACCTAGAATCCAAACCCCCTGAGCTTTCTATCACATCGTCCCTTCCTCCAGGGCCGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CAA 90 bp AGGTCTGTCCATGTCTCCAGGACCCTCCTGAGTTGGAGTCCATGCTaGGCTAGGGGGTGTAGTACTGGGTCTGTCCTCTGGGAGCAGTGT +
Preference number: 6 (lower is better)
Translates to: RSVHVSRTLLSWSPC*ARGCSTGSVLWEQC
Trigger: ACACTGCTCCCAGAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGACATGGACAGACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS TCA 72 bp GATATAGTAGAAACAGTCCAGGCCAACATCAGAGGGTaGGCTGGGGGCCGTGGGGGAATCCAGAGAGCCCTC +
Preference number: 6 (lower is better)
Translates to: DIVETVQANIRG*AGGRGGIQRAL
Trigger: GAGGGCTCTCTGGATTCCCCCACGGCCCCCAGCTCACCCTCTGATGTTGGCCTGGACTGTTTCTACTATATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS GCA 72 bp GTCCATGTCTCCAGGACCCTCCTGAGTTGGAGTCCATaGTTGGCTAGGGGGTGTAGTACTGGGTCTGTCCTC +
Preference number: 6 (lower is better)
Translates to: VHVSRTLLSWSP*LARGCSTGSVL
Trigger: GAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGACATGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS GCA 72 bp TGTTGCTGTAGTTCCCCGGGAAGCCAGGAGAGACAATaGGGCCAGTGGTGGCATTCCGAATCACTCCACCAC +
Preference number: 6 (lower is better)
Translates to: CCCSSPGSQERQ*GQWWHSESLHH
Trigger: GTGGTGGAGTGATTCGGAATGCCACCACTGGCCGCATTGTCTCTCCTGGCTTCCCGGGGAACTACAGCAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS CCA 72 bp TGGGTGGAGACTGGTGACAGTCACATCTCCATACGCTaGACGTCGGGGAAAGTGGCAGCTCAGGAGATAGGC +
Preference number: 6 (lower is better)
Translates to: WVETGDSHISIR*TSGKVAAQEIG
Trigger: GCCTATCTCCTGAGCTGCCACTTTCCCCGACGTCCAGCGTATGGAGATGTGACTGTCACCAGTCTCCACCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS CAA 72 bp CATGTCTCCAGGACCCTCCTGAGTTGGAGTCCATGCTaGGCTAGGGGGTGTAGTACTGGGTCTGTCCTCTGG +
Preference number: 6 (lower is better)
Translates to: HVSRTLLSWSPC*ARGCSTGSVLW
Trigger: CCAGAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGACATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
CDS CCA 72 bp CTCGACACCAAGCCCTGTGGTCTTAGACATGACCTCTaGAACCCAAGGTCTGTCCATGTCTCCAGGACCCTC +
Preference number: 6 (lower is better)
Translates to: LDTKPCGLRHDL*NPRSVHVSRTL
Trigger: GAGGGTCCTGGAGACATGGACAGACCTTGGGTTCCAGAGGTCATGTCTAAGACCACAGGGCTTGGTGTCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS CCA 72 bp GCAATGCAAACAGGCTCTTGGGAATCCCAAAAGGGCTaGGTGGCATTGAGACAGGTGAGGAACCTGGCACCC +
Preference number: 6 (lower is better)
Translates to: AMQTGSWESQKG*VALRQVRNLAP
Trigger: GGGTGCCAGGTTCCTCACCTGTCTCAATGCCACCCAGCCCTTTTGGGATTCCCAAGAGCCTGTTTGCATTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS TCA 72 bp GGTAATGATGGTGGTAGTGGTCTCTTCGTCATCCCCTaGAGCTGTGGAGGTGGCAATGGTTCCCTCGACACC +
Preference number: 6 (lower is better)
Translates to: GNDGGSGLFVIP*SCGGGNGSLDT
Trigger: GGTGTCGAGGGAACCATTGCCACCTCCACAGCTTCAGGGGATGACGAAGAGACCACTACCACCATCATTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000151982.8
CDS CAA 72 bp CATGTCTCCAGGACCCTCCTGAGTTGGAGTCCATGCTaGGCTAGGGGGTGTAGTACTGGGTCTGTCCTCTNN +
Preference number: 6 (lower is better)
Translates to: HVSRTLLSWSPC*ARGCSTGSVLX
Trigger: NNAGAGGACAGACCCAGTACTACACCCCCTAGCCAAGCATGGACTCCAACTCAGGAGGGTCCTGGAGACATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000151982.8
CDS GCA 72 bp TGGTGGCATTCCGAATCACTCCACCACAAGCAGCAATaGAAACAGGCTCTTGGGAATCCCAAAAGGGCTGGG +
Preference number: 6 (lower is better)
Translates to: WWHSESLHHKQQ*KQALGNPKRAG
Trigger: CCCAGCCCTTTTGGGATTCCCAAGAGCCTGTTTGCATTGCTGCTTGTGGTGGAGTGATTCGGAATGCCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS CAA 90 bp GGCATTCCGAATCACTCCACCACAAGCAGCAATGCAAACAGGCTCTaGGGAATCCCAAAAGGGCTGGGTGGCATTGAGACAGGTGAGGAA +
Preference number: 6 (lower is better)
Translates to: GIPNHSTTSSNANRL*GIPKGLGGIETGEE
Trigger: TTCCTCACCTGTCTCAATGCCACCCAGCCCTTTTGGGATTCCCAAGAGCCTGTTTGCATTGCTGCTTGTGGTGGAGTGATTCGGAATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS CCA 72 bp ATCACTCCACCACAAGCAGCAATGCAAACAGGCTCTTaGGAATCCCAAAAGGGCTGGGTGGCATTGAGACAG +
Preference number: 6 (lower is better)
Translates to: ITPPQAAMQTGS*ESQKGWVALRQ
Trigger: CTGTCTCAATGCCACCCAGCCCTTTTGGGATTCCCAAGAGCCTGTTTGCATTGCTGCTTGTGGTGGAGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000646.14
ENSMUST00000093995.10
ENSMUST00000140630.2
ENSMUST00000151982.8
CDS TCA 72 bp CGTCTCTCCAGTCTCATAAGTTGGATTGTCAAATGCTaGCTCTACCGTGATGCGGTTATAGGGGCGAGGATG +
Preference number: 6 (lower is better)
Translates to: RLSSLISWIVKC*LYRDAVIGARM
Trigger: CATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGAGAGACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000646.14