Pregenerated sensors for SETD6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031671Ensembl transcript IDs: ENSMUST00000034096.6, ENSMUST00000141900.8, ENSMUST00000148727.3
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TCACAACCTATCACAAAGGCTCCCTCTTCCCCTACCATCTCCTGTTaGCACAGGAAATCCCAGCGTTCACACACGAGCAGCTTTTCAGTT | + |
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Preference number: 2 (lower is better) Translates to: SQPITKAPSSPTISC*HRKSQRSHTSSFSV Trigger: AACTGAAAAGCTGCTCGTGTGTGAACGCTGGGATTTCCTGTGCAAACAGGAGATGGTAGGGGAAGAGGGAGCCTTTGTGATAGGTTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141900.8 |
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| 3UTR-3UTR CAA 90 bp | GTACCTTCAGTGTGGTGGCTAGCTCCTCTTCAGTCAGCACCTCCTCACAACCTACCTACCATCTCCTGTTaGCACAGGAAATCCCAGCGT | + |
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Preference number: 3 (lower is better) Translates to: VPSVWWLAPLQSAPPHNLPTISC*HRKSQR Trigger: ACGCTGGGATTTCCTGTGCAAACAGGAGATGGTAGG...TAGGTTGTGAGGAGGTGCTGACTGAAGAGGAGCTAGCCACCACACTGAAGGTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141900.8 |
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| 3UTR GCA 72 bp | AGCATGCTCCTAAATCTGCTGACATCAATCCAAACGTaGCGACATGTAAGTTTACTTTTTAGCTATTTTTCC | + |
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Preference number: 3 (lower is better) Translates to: SMLLNLLTSIQT*RHVSLLFSYFS Trigger: GGAAAAATAGCTAAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAGATTTAGGAGCATGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | GCACCTCCTCACAACCTATCACAAAGGCTCCCTCTTCCCCTACCATCTCCTGTTCCGAGTGAGCCTCCATaGAGGGCAGGACGATGGAAT | + |
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Preference number: 4 (lower is better) Translates to: APPHNLSQRLPLPLPSPVPSEPP*RAGRWN Trigger: ATTCCATCGTCCTGCCCTTCATGGAGGCTCACTCGG...AACAGGAGATGGTAGGGGAAGAGGGAGCCTTTGTGATAGGTTGTGAGGAGGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141900.8 |
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| CDS-3UTR TCA 90 bp | CTAGCTCCTCTTCAGTCAGCACCTCCTCACAACCTATCACAAAGGCTCCCTCTTCTGAAGAGATCCGAGTaGGCCTCCATGAAGGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LAPLQSAPPHNLSQRLPLLKRSE*ASMKGR Trigger: CCTGCCCTTCATGGAGGCTCACTCGGATCTCTTCAG...AAGAGGGAGCCTTTGTGATAGGTTGTGAGGAGGTGCTGACTGAAGAGGAGCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141900.8 |
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| 3UTR CAA 72 bp | ATCACAAAGGCTCCCTCTTCCCCTACCATCTCCTGTTaGCACAGGAAATCCCAGCGTTCACACACGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: ITKAPSSPTISC*HRKSQRSHTSS Trigger: GCTGCTCGTGTGTGAACGCTGGGATTTCCTGTGCAAACAGGAGATGGTAGGGGAAGAGGGAGCCTTTGTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141900.8 |
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| CDS-3UTR GCA 90 bp | AAAGTCCCAAATTTCCCTCCTCTCCAAGCAACAGAACATGACCTTAAAAGGTTCCCGGCCACCGTGCCCTaGCGGCTCACCGTCACCTTA | + |
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Preference number: 4 (lower is better) Translates to: KVPNFPPLQATEHDLKRFPATVP*RLTVTL Trigger: TAAGGTGACGGTGAGCCGGCAGGGCACGGTGGCCGG...GAACCTTTTAAGGTCATGTTCTGTTGCTTGGAGAGGAGGGAAATTTGGGACTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR GCA 90 bp | GATTCTAACTGCCAAATAGCAAAAGTCCCAAATTTCCCTCCTCTCCAAGCAACACATAGCCGGCCACCGTaGCCTGCCGGCTCACCGTCA | + |
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Preference number: 4 (lower is better) Translates to: DSNCQIAKVPNFPPLQATHSRPP*PAGSPS Trigger: TGACGGTGAGCCGGCAGGGCACGGTGGCCGGCTATG...TGTTGCTTGGAGAGGAGGGAAATTTGGGACTTTTGCTATTTGGCAGTTAGAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR GCA 90 bp | CATGCTCCTAAATCTGCTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTCTCCCGCGCCACCATaGCATAGCCGGCCACCGTGC | + |
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Preference number: 4 (lower is better) Translates to: HAPKSADINPNVPTCKFTSPAPP*HSRPPC Trigger: GCACGGTGGCCGGCTATGGCATGGTGGCGCGGGAGA...AGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAGATTTAGGAGCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | GATTCTAACTGCCAAATAGCAAAAGTCCCAAATTTCCCTCCTCTCCAAGCAACAGTAAGGGCTCCAGGGTaGTGCTGGGGCCTGGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: DSNCQIAKVPNFPPLQATVRAPG*CWGLEL Trigger: GAGCTCCAGGCCCCAGCATCACCCTGGAGCCCTTAC...TGTTGCTTGGAGAGGAGGGAAATTTGGGACTTTTGCTATTTGGCAGTTAGAATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CCA 90 bp | ATGCTCCTAAATCTGCTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTGGTGATGCTGGGGCCTaGAGCTCGTGGAGCAGCGCC | + |
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Preference number: 4 (lower is better) Translates to: MLLNLLTSIQTCRHVSLLGDAGA*SSWSSA Trigger: GGCGCTGCTCCACGAGCTCCAGGCCCCAGCATCACC...AAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAGATTTAGGAGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | CATGCTCCTAAATCTGCTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTCGGACTGTCACCATCTaGATGTCAGCCGTGTCGTCT | + |
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Preference number: 4 (lower is better) Translates to: HAPKSADINPNVPTCKFTRTVTI*MSAVSS Trigger: AGACGACACGGCTGACATTCAGATGGTGACAGTCCG...AGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAGATTTAGGAGCATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | CATGCTCCTAAATCTGCTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTAGGCACCATCAAGGGTaGGTTGGGCTCCTTTTCATC | + |
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Preference number: 4 (lower is better) Translates to: HAPKSADINPNVPTCKFTRHHQG*VGLLFI Trigger: GATGAAAAGGAGCCCAACTCACCCTTGATGGTGCCT...AGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAGATTTAGGAGCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CCA 90 bp | CTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTAGCTATTTTTCCCAAACGCCCCAGCTCTaGCCAGAGCGCGAAGTAAGG | + |
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Preference number: 4 (lower is better) Translates to: LTSIQTCRHVSLLFSYFSQTPQL*PEREVR Trigger: CCTTACTTCGCGCTCTGGCCAGAGCTGGGGCGTTTG...GGAAAAATAGCTAAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | CTGCTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTAGCTATTTTCCGAGTGAGCCTCCATaGAGGGCAGGACGATGGAAT | + |
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Preference number: 4 (lower is better) Translates to: LLTSIQTCRHVSLLFSYFPSEPP*RAGRWN Trigger: ATTCCATCGTCCTGCCCTTCATGGAGGCTCACTCGG...AAAATAGCTAAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | CTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTAGCTATTTTTCCCTGAAGAGATCCGAGTaGGCCTCCATGAAGGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LTSIQTCRHVSLLFSYFSLKRSE*ASMKGR Trigger: CCTGCCCTTCATGGAGGCTCACTCGGATCTCTTCAG...GGAAAAATAGCTAAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | GATTCTAACTGCCAAATAGCAAAAGTCCCAAATTTCCCTCCTCTCCAAGCAACAGCTCTTTATAGTCTCTaGACTCCTCAGCAGGCATGC | + |
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Preference number: 4 (lower is better) Translates to: DSNCQIAKVPNFPPLQATALYSL*TPQQAC Trigger: GCATGCCTGCTGAGGAGTTCAGAGACTATAAAGAGC...TGTTGCTTGGAGAGGAGGGAAATTTGGGACTTTTGCTATTTGGCAGTTAGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR GCA 90 bp | CCAAATTTCCCTCCTCTCCAAGCAACAGAACATGACCTTAAAAGGTTCTCAGGACTACCATCTCCTGTTTaGACAGGAAATCCCAGCGTT | + |
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Preference number: 4 (lower is better) Translates to: PNFPPLQATEHDLKRFSGLPSPV*TGNPSV Trigger: AACGCTGGGATTTCCTGTGCAAACAGGAGATGGTAG...TCCTGAGAACCTTTTAAGGTCATGTTCTGTTGCTTGGAGAGGAGGGAAATTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CCA 90 bp | AAAGTCCCAAATTTCCCTCCTCTCCAAGCAACAGAACATGACCTTAAAAGGTTCGTACCTTCAGTGTGGTaGCTAGCTCCTCTTCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: KVPNFPPLQATEHDLKRFVPSVW*LAPLQS Trigger: TGACTGAAGAGGAGCTAGCCACCACACTGAAGGTAC...GAACCTTTTAAGGTCATGTTCTGTTGCTTGGAGAGGAGGGAAATTTGGGACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CCA 90 bp | GATTCTAACTGCCAAATAGCAAAAGTCCCAAATTTCCCTCCTCTCCAAGCAACAACAGTACCTTCAGTGTaGTGGCTAGCTCCTCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: DSNCQIAKVPNFPPLQATTVPSV*WLAPLQ Trigger: CTGAAGAGGAGCTAGCCACCACACTGAAGGTACTGT...TGTTGCTTGGAGAGGAGGGAAATTTGGGACTTTTGCTATTTGGCAGTTAGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CCA 90 bp | CCAAATTTCCCTCCTCTCCAAGCAACAGAACATGACCTTAAAAGGTTCTCAGGACTGTTTTTAAGTCTGTaGTGTAGGTCTGTAGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: PNFPPLQATEHDLKRFSGLFLSL*CRSVGS Trigger: TGACCCTACAGACCTACACCACAGACTTAAAAACAG...TCCTGAGAACCTTTTAAGGTCATGTTCTGTTGCTTGGAGAGGAGGGAAATTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | CTCCTAAATCTGCTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTAAGAAGCCGTTTCCATaGTTCTTGGAGCTTGGGGAT | + |
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Preference number: 4 (lower is better) Translates to: LLNLLTSIQTCRHVSLLFKKPFP*FLELGD Trigger: ATCCCCAAGCTCCAAGAATCATGGAAACGGCTTCTT...AAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAGATTTAGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | CCAAATTTCCCTCCTCTCCAAGCAACAGAACATGACCTTAAAAGGTTCTCAGGATTTGCCCATATGTGTTaGAGATTTCATGACCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: PNFPPLQATEHDLKRFSGFAHMC*RFHDLQ Trigger: TTGAAGGTCATGAAATCTTCAACACATATGGGCAAA...TCCTGAGAACCTTTTAAGGTCATGTTCTGTTGCTTGGAGAGGAGGGAAATTTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | CTGCTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTAGCTATTTTGCTTGGGGATATCTGTaGTTGCCAAACTGTCGTCTT | + |
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Preference number: 4 (lower is better) Translates to: LLTSIQTCRHVSLLFSYFAWGYL*LPNCRL Trigger: AAGACGACAGTTTGGCAATCACAGATATCCCCAAGC...AAAATAGCTAAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | CTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTAGCTATTTTTCCAGGCCTCCTTATTACTaGGTAAGTCCTGGTCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: LTSIQTCRHVSLLFSYFSRPPYY*VSPGLF Trigger: AAACAGACCAGGACTTACTCAGTAATAAGGAGGCCT...GGAAAAATAGCTAAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR GCA 90 bp | TCTGATGGCATTAGTAAAAATAGCATGCTCCTAAATCTGCTGACATCAATCCAAGGGGATATCTGTGATTaGCAAACTGTCGTCTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: SDGISKNSMLLNLLTSIQGDICD*QTVVFC Trigger: ACAGAAGACGACAGTTTGGCAATCACAGATATCCCC...TTGGATTGATGTCAGCAGATTTAGGAGCATGCTATTTTTACTAATGCCATCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CCA 90 bp | CTGCTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTAGCTATTTTCCATCAAGGGTGAGTTaGGCTCCTTTTCATCATCAT | + |
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Preference number: 4 (lower is better) Translates to: LLTSIQTCRHVSLLFSYFPSRVS*APFHHH Trigger: ATGATGATGAAAAGGAGCCCAACTCACCCTTGATGG...AAAATAGCTAAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR GCA 90 bp | CTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTAGCTATTTTTCCTGCCAGTTAGCCATTTaGCCATATGTGTTGAAGATT | + |
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Preference number: 4 (lower is better) Translates to: LTSIQTCRHVSLLFSYFSCQLAI*PYVLKI Trigger: AATCTTCAACACATATGGGCAAATGGCTAACTGGCA...GGAAAAATAGCTAAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CCA 90 bp | CTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTAGCTATTTTTCCCCGAGTACTCTAGATTaGCATTATGATTGGCTATGT | + |
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Preference number: 4 (lower is better) Translates to: LTSIQTCRHVSLLFSYFSPSTLD*HYDWLC Trigger: ACATAGCCAATCATAATGCCAATCTAGAGTACTCGG...GGAAAAATAGCTAAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CCA 90 bp | CTCCTAAATCTGCTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTTTACTGAGTAAGTCCTaGTCTGTTTTTAAGTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: LLNLLTSIQTCRHVSLLFLLSKS*SVFKSV Trigger: CACAGACTTAAAAACAGACCAGGACTTACTCAGTAA...AAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAGATTTAGGAG 38% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR TCA 90 bp | CTGCTGACATCAATCCAAACGTGCCGACATGTAAGTTTACTTTTTAGCTATTTTTCTAGATTGGCATTATaGTTGGCTATGTGGTTTAGT | + |
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Preference number: 4 (lower is better) Translates to: LLTSIQTCRHVSLLFSYFSRLAL*LAMWFS Trigger: ACTAAACCACATAGCCAATCATAATGCCAATCTAGA...AAAATAGCTAAAAAGTAAACTTACATGTCGGCACGTTTGGATTGATGTCAGCAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS CCA 90 bp | CTGTACCCTTTAGGAGTCGCAACCGCTCTTCCTCCGGCCAAAACATaGGATGCTCCAAACGCCCCAGCTCTGGCCAGAGCGCGAAGTAAG | + |
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Preference number: 5 (lower is better) Translates to: LYPLGVATALPPAKT*DAPNAPALARARSK Trigger: CTTACTTCGCGCTCTGGCCAGAGCTGGGGCGTTTGGAGCATCCCATGTTTTGGCCGGAGGAAGAGCGGTTGCGACTCCTAAAGGGTACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS TCA 90 bp | CTTGTTGTTCGCGCCAGCTCAGCGTGGCATAGGCCTCCTTATTACTaGGTAAGTCCTGGTCTGTTTTTAAGTCTGTGGTGTAGGTCTGTA | + |
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Preference number: 5 (lower is better) Translates to: LVVRASSAWHRPPYY*VSPGLFLSLWCRSV Trigger: TACAGACCTACACCACAGACTTAAAAACAGACCAGGACTTACTCAGTAATAAGGAGGCCTATGCCACGCTGAGCTGGCGCGAACAACAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS CCA 90 bp | CTATGTGGTTTAGTATGTCTGCAGCAGGCACCATCAAGGGTGAGTTaGGCTCCTTTTCATCATCATCTTCCTCCAGCGGTTCTTGAAAGC | + |
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Preference number: 5 (lower is better) Translates to: LCGLVCLQQAPSRVS*APFHHHLPPAVLES Trigger: GCTTTCAAGAACCGCTGGAGGAAGATGATGATGAAAAGGAGCCCAACTCACCCTTGATGGTGCCTGCTGCAGACATACTAAACCACATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS CCA 90 bp | CCATCCGGAGATAATCTGCCGAGTACTCTAGATTGGCATTATGATTaGCTATGTGGTTTAGTATGTCTGCAGCAGGCACCATCAAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: PSGDNLPSTLDWHYD*LCGLVCLQQAPSRV Trigger: CACCCTTGATGGTGCCTGCTGCAGACATACTAAACCACATAGCCAATCATAATGCCAATCTAGAGTACTCGGCAGATTATCTCCGGATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CAA 90 bp | GATTCTAACTGCCAAATAGCAAAAGTCCCAAATTTCCCTCCTCTCCAAGCAACACCTACCATCTCCTGTTaGCACAGGAAATCCCAGCGT | + |
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Preference number: 5 (lower is better) Translates to: DSNCQIAKVPNFPPLQATPTISC*HRKSQR Trigger: ACGCTGGGATTTCCTGTGCAAACAGGAGATGGTAGG...TGTTGCTTGGAGAGGAGGGAAATTTGGGACTTTTGCTATTTGGCAGTTAGAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CAA 90 bp | CCAAATTTCCCTCCTCTCCAAGCAACAGAACATGACCTTAAAAGGTTCTCAGGAATACATATGAATCAGTaGCCAGTTAGCCATTTGCCC | + |
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Preference number: 5 (lower is better) Translates to: PNFPPLQATEHDLKRFSGIHMNQ*PVSHLP Trigger: GGGCAAATGGCTAACTGGCAACTGATTCATATGTAT...TCCTGAGAACCTTTTAAGGTCATGTTCTGTTGCTTGGAGAGGAGGGAAATTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CAA 90 bp | GATTCTAACTGCCAAATAGCAAAAGTCCCAAATTTCCCTCCTCTCCAAGCAACATTGCCAGTTAGCCATTaGCCCATATGTGTTGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: DSNCQIAKVPNFPPLQATLPVSH*PICVED Trigger: ATCTTCAACACATATGGGCAAATGGCTAACTGGCAA...TGTTGCTTGGAGAGGAGGGAAATTTGGGACTTTTGCTATTTGGCAGTTAGAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CAA 90 bp | AAATCTGATGGCATTAGTAAAAATAGCATGCTCCTAAATCTGCTGACATCAATCACCATCAAGGGTGAGTaGGGCTCCTTTTCATCATCA | + |
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Preference number: 5 (lower is better) Translates to: KSDGISKNSMLLNLLTSITIKGE*GSFSSS Trigger: TGATGATGAAAAGGAGCCCAACTCACCCTTGATGGT...GATTGATGTCAGCAGATTTAGGAGCATGCTATTTTTACTAATGCCATCAGATTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS-3UTR CAA 90 bp | AAATCTGATGGCATTAGTAAAAATAGCATGCTCCTAAATCTGCTGACATCAATCTTTCAGTTTCATCCTTaGTTCCCTGCAGTGCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: KSDGISKNSMLLNLLTSIFQFHP*FPAVQH Trigger: ATGCTGCACTGCAGGGAACAAAGGATGAAACTGAAA...GATTGATGTCAGCAGATTTAGGAGCATGCTATTTTTACTAATGCCATCAGATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS GCA 72 bp | GGAGCTCCCCGGCCCGCACGCTCTCCCGCGCCACCATaGCATAGCCGGCCACCGTGCCCTGCCGGCTCACCG | + |
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Preference number: 6 (lower is better) Translates to: GAPRPARSPAPP*HSRPPCPAGSP Trigger: CGGTGAGCCGGCAGGGCACGGTGGCCGGCTATGGCATGGTGGCGCGGGAGAGCGTGCGGGCCGGGGAGCTCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS GCA 72 bp | AGTCGCAACCGCTCTTCCTCCGGCCAAAACATGGGATaGTCCAAACGCCCCAGCTCTGGCCAGAGCGCGAAG | + |
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Preference number: 6 (lower is better) Translates to: SRNRSSSGQNMG*SKRPSSGQSAK Trigger: CTTCGCGCTCTGGCCAGAGCTGGGGCGTTTGGAGCATCCCATGTTTTGGCCGGAGGAAGAGCGGTTGCGACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS CAA 72 bp | GGGCTCCTTTTCATCATCATCTTCCTCCAGCGGTTCTaGAAAGCTATAAGCCATCACGAGGGCCACGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: GLLFIIIFLQRF*KAISHHEGHEL Trigger: CAGCTCGTGGCCCTCGTGATGGCTTATAGCTTTCAAGAACCGCTGGAGGAAGATGATGATGAAAAGGAGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034096.6 ENSMUST00000148727.3 |
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| CDS TCA 72 bp | CGCGCCAGCTCAGCGTGGCATAGGCCTCCTTATTACTaGGTAAGTCCTGGTCTGTTTTTAAGTCTGTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: RASSAWHRPPYY*VSPGLFLSLWC Trigger: ACACCACAGACTTAAAAACAGACCAGGACTTACTCAGTAATAAGGAGGCCTATGCCACGCTGAGCTGGCGCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS CAA 72 bp | AGCGTTCACACACGAGCAGCTTTTCAGTTTCATCCTTaGTTCCCTGCAGTGCAGCATCTCGGACTGTCACCA | + |
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Preference number: 6 (lower is better) Translates to: SVHTRAAFQFHP*FPAVQHLGLSP Trigger: TGGTGACAGTCCGAGATGCTGCACTGCAGGGAACAAAGGATGAAACTGAAAAGCTGCTCGTGTGTGAACGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS TCA 72 bp | GCCGTTTCCATGATTCTTGGAGCTTGGGGATATCTGTaGTTGCCAAACTGTCGTCTTCTGTCTCCTCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: AVSMILGAWGYL*LPNCRLLSPPL Trigger: GAGAGGAGGAGACAGAAGACGACAGTTTGGCAATCACAGATATCCCCAAGCTCCAAGAATCATGGAAACGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS TCA 72 bp | CTGAGTAGCCACCATCCGGAGATAATCCATCAAGGGTaGGTTGGGCTCCTTTTCATCATCATCTTCCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: LSSHHPEIIHQG*VGLLFIIIFLQ Trigger: CTGGAGGAAGATGATGATGAAAAGGAGCCCAACTCACCCTTGATGGATTATCTCCGGATGGTGGCTACTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148727.3 |
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| CDS CCA 72 bp | TTAGTATGTCTGCAGCAGGCACCATCAAGGGTGAGTTaGGCTCCTTTTCATCATCATCTTCCTCCAGCGGTT | + |
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Preference number: 6 (lower is better) Translates to: LVCLQQAPSRVS*APFHHHLPPAV Trigger: AACCGCTGGAGGAAGATGATGATGAAAAGGAGCCCAACTCACCCTTGATGGTGCCTGCTGCAGACATACTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS CAA 72 bp | TTTAGTATGTCTGCAGCAGGCACCATCAAGGGTGAGTaGGGCTCCTTTTCATCATCATCTTCCTCCAGCGGT | + |
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Preference number: 6 (lower is better) Translates to: FSMSAAGTIKGE*GSFSSSSSSSG Trigger: ACCGCTGGAGGAAGATGATGATGAAAAGGAGCCCAACTCACCCTTGATGGTGCCTGCTGCAGACATACTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS CAA 90 bp | AACAGAACACTGTTTCGAAGAAGCCGTTTCCATGATTCTTGGAGCTaGGGGATATCTGTGATTGCCAAACTGTCGTCTTCTGTCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: NRTLFRRSRFHDSWS*GISVIAKLSSSVSS Trigger: GGAGGAGACAGAAGACGACAGTTTGGCAATCACAGATATCCCCAAGCTCCAAGAATCATGGAAACGGCTTCTTCGAAACAGTGTTCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS CCA 72 bp | GATAATCTGCCGAGTACTCTAGATTGGCATTATGATTaGCTATGTGGTTTAGTATGTCTGCAGCAGGCACCA | + |
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Preference number: 6 (lower is better) Translates to: DNLPSTLDWHYD*LCGLVCLQQAP Trigger: TGGTGCCTGCTGCAGACATACTAAACCACATAGCCAATCATAATGCCAATCTAGAGTACTCGGCAGATTATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034096.6 |
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| CDS CAA 90 bp | GGGCTCAGCAAAACCATACATATGAATCAGTTGCCAGTTAGCCATTaGCCCATATGTGTTGAAGATTTCATGACCTTCAAGAATGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GLSKTIHMNQLPVSH*PICVEDFMTFKNGL Trigger: CAGCCCATTCTTGAAGGTCATGAAATCTTCAACACATATGGGCAAATGGCTAACTGGCAACTGATTCATATGTATGGTTTTGCTGAGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034096.6 ENSMUST00000148727.3 |
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| CDS CAA 90 bp | TGTGTTGTTAGGATAGGGCTCAGCAAAACCATACATATGAATCAGTaGCCAGTTAGCCATTTGCCCATATGTGTTGAAGATTTCATGACC | + |
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Preference number: 6 (lower is better) Translates to: CVVRIGLSKTIHMNQ*PVSHLPICVEDFMT Trigger: GGTCATGAAATCTTCAACACATATGGGCAAATGGCTAACTGGCAACTGATTCATATGTATGGTTTTGCTGAGCCCTATCCTAACAACACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034096.6 ENSMUST00000148727.3 |
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