RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SETD5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034269

Ensembl transcript IDs: ENSMUST00000042889.12, ENSMUST00000113155.2, ENSMUST00000113157.8

Found 562 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTaGCCAGACCCATTCCTCTGGCACCTTGTACCCCTCTTCCCCAGC +
Preference number: 1 (lower is better)
Translates to: LQGRRPVMTTSLISC*PDPFLWHLVPLFPS
Trigger: GCTGGGGAAGAGGGGTACAAGGTGCCAGAGGAATGGGTCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 90 bp CAGACCCATTCCTCTGGCACCTTGTACCCCTCTTCCCCAGCGATATaGTCGGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGG +
Preference number: 1 (lower is better)
Translates to: QTHSSGTLYPSSPAI*SALIPEAAGRKQLW
Trigger: CCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCGCTGGGGAAGAGGGGTACAAGGTGCCAGAGGAATGGGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 90 bp AGCCGGGCAAGCCTCAGTCAGAGTAGGCACCCACATTCCTCTCCCTaGCCATTTCCTGGTGGCTTTAAGACAAAGGCAGGGAGCACTCCA +
Preference number: 1 (lower is better)
Translates to: SRASLSQSRHPHSSP*PFPGGFKTKAGSTP
Trigger: TGGAGTGCTCCCTGCCTTTGTCTTAAAGCCACCAGGAAATGGGCAGGGAGAGGAATGTGGGTGCCTACTCTGACTGAGGCTTGCCCGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATaGACTGATGGGGAGAAGCCAGTCTGCTCTTTGTCTCTCCTACAG +
Preference number: 1 (lower is better)
Translates to: LGWLQGSSRGVQQAQ*TDGEKPVCSLSLLQ
Trigger: CTGTAGGAGAGACAAAGAGCAGACTGGCTTCTCCCCATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR TCA 90 bp CCTCTGGCACCTTGTACCCCTCTTCCCCAGCGATATGCTCGGCCTTaGTTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAG +
Preference number: 1 (lower is better)
Translates to: PLAPCTPLPQRYARP*FQRQLEGSSYGLIK
Trigger: CTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCGCTGGGGAAGAGGGGTACAAGGTGCCAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR TCA 90 bp CTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTaGTGGGGAGAAGCCAGTCTGCTCTTTGTCTCTCCTACAGAACAG +
Preference number: 1 (lower is better)
Translates to: LASGLLQGCTTGTMH*WGEASLLFVSPTEQ
Trigger: CTGTTCTGTAGGAGAGACAAAGAGCAGACTGGCTTCTCCCCATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 90 bp CCGCAACCCTATCTGTCCCATTCTTACCCTGCAGTCATGAGTGCATaGTTTTCAGTCACGGAGGCCGTCCTGCTCTTAGGACAGCAACTC +
Preference number: 1 (lower is better)
Translates to: PQPYLSHSYPAVMSA*FSVTEAVLLLGQQL
Trigger: GAGTTGCTGTCCTAAGAGCAGGACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGACAGATAGGGTTGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR CCA 90 bp CCCCTCTTCCCCAGCGATATGCTCGGCCTTGATTCCAGAGGCAGCTaGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCATAT +
Preference number: 1 (lower is better)
Translates to: PLFPSDMLGLDSRGS*KEAAMGSLSSVCPY
Trigger: ATATGGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCGCTGGGGAAGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR TCA 90 bp CTTCAGACAAGATTTACATCTTTCTCCAAGGCCGGAGGCCAGTCATaGCCACAAGTCTCATTTCTTGCTGACCAGACCCATTCCTCTGGC +
Preference number: 1 (lower is better)
Translates to: LQTRFTSFSKAGGQS*PQVSFLADQTHSSG
Trigger: GCCAGAGGAATGGGTCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAAATCTTGTCTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 90 bp GAGGGAGACTCACAGTATATCTTGTCCAAAAGAAGTACGGTCCACTaGAGCACCAGGGATCACACTGTCATACACTCACTACCCTACCAT +
Preference number: 1 (lower is better)
Translates to: EGDSQYILSKRSTVH*STRDHTVIHSLPYH
Trigger: ATGGTAGGGTAGTGAGTGTATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGATATACTGTGAGTCTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR CCA 90 bp TTCACAGGGCTATCATTAAACTGTGAAACAACTTGGAAGGAGGAGTaGATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCA +
Preference number: 1 (lower is better)
Translates to: FTGLSLNCETTWKEE*MVTAGAQSIPNLLP
Trigger: TGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCATCCACTCCTCCTTCCAAGTTGTTTCACAGTTTAATGATAGCCCTGTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCGATATGCTCGGCCTTaGTTCCAGAGGCAGCTGGAA +
Preference number: 2 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDRYARP*FQRQLE
Trigger: TTCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAACGTGGGGCAGGTATaGCCCACACACAATCACAGC +
Preference number: 2 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDNVGQV*PTHNHS
Trigger: GCTGTGATTGTGTGTGGGGCATACCTGCCCCACGTT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATGATTCCAGAGGCAGCTaGAAGGAAGCAGCTATGGGC +
Preference number: 2 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDDSRGS*KEAAMG
Trigger: GCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATC...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCCACATTCCTCTCCCTaGCCATTTCCTGGTGGCTTT +
Preference number: 2 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDPHSSP*PFPGGF
Trigger: AAAGCCACCAGGAAATGGGCAGGGAGAGGAATGTGG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR CAA 90 bp CCACAAGTCTCATTTCTTGCTGACCAGACCCATTCCTCTGGCACCTaGTACCCCTCTTCCCCAGCGATATGCTCGGCCTTGATTCCAGAG +
Preference number: 2 (lower is better)
Translates to: PQVSFLADQTHSSGT*YPSSPAICSALIPE
Trigger: CTCTGGAATCAAGGCCGAGCATATCGCTGGGGAAGAGGGGTACAAGGTGCCAGAGGAATGGGTCTGGTCAGCAAGAAATGAGACTTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR TCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCGATATGCTCGGCCTTaGTTCCAGAGGCAGCTGGAA +
Preference number: 2 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPRYARP*FQRQLE
Trigger: TTCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCGATATGCTCGGCCTTaGTTCCAGAGGCAGCTGGAA +
Preference number: 2 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVRYARP*FQRQLE
Trigger: TTCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCTTACCCTGCAGTCATaGGTGCATGCTTTTCAGTCA +
Preference number: 2 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDLTLQS*VHAFQS
Trigger: TGACTGAAAAGCATGCACTCATGACTGCAGGGTAAG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGATTCCAGAGGCAGCTaGAAGGAAGCAGCTATGGGC +
Preference number: 2 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVDSRGS*KEAAMG
Trigger: GCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCAGGTGGACACACCTTaGCCATGCATCTGCATTAGG +
Preference number: 2 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVQVDTP*PCICIR
Trigger: CCTAATGCAGATGCATGGTCAAGGTGTGTCCACCTG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGCAGGTGGACACACCTTaGCCATGCATCTGCATTAGG +
Preference number: 2 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEQVDTP*PCICIR
Trigger: CCTAATGCAGATGCATGGTCAAGGTGTGTCCACCTG...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR GCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGCCACATTCCTCTCCCTaGCCATTTCCTGGTGGCTTT +
Preference number: 2 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEPHSSP*PFPGGF
Trigger: AAAGCCACCAGGAAATGGGCAGGGAGAGGAATGTGG...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGAGTCTCATTTCTTGCTaGCCAGACCCATTCCTCTGG +
Preference number: 2 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQESLISC*PDPFLW
Trigger: CCAGAGGAATGGGTCTGGTCAGCAAGAAATGAGACT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAATTGTGTACCCCACCTaGGCTGGCTTCAGGGCTCCT +
Preference number: 2 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIIVYPT*AGFRAP
Trigger: AGGAGCCCTGAAGCCAGCCCAGGTGGGGTACACAAT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAAACGTGGGGCAGGTATaGCCCACACACAATCACAGC +
Preference number: 2 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVINVGQV*PTHNHS
Trigger: GCTGTGATTGTGTGTGGGGCATACCTGCCCCACGTT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGATTCCAGAGGCAGCTaGAAGGAAGCAGCTATGGGC +
Preference number: 2 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLDSRGS*KEAAMG
Trigger: GCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAAGGGAGCACTCCAGGTaGACACACCTTGACCATGCA +
Preference number: 2 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIREHSR*THLDHA
Trigger: TGCATGGTCAAGGTGTGTCCACCTGGAGTGCTCCCT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACAGGTGGACACACCTTaGCCATGCATCTGCATTAGG +
Preference number: 2 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIQVDTP*PCICIR
Trigger: CCTAATGCAGATGCATGGTCAAGGTGTGTCCACCTG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAACTTGGAAGGAGGAGTaGATGGTAACAGCTGGAGCC +
Preference number: 2 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVITWKEE*MVTAGA
Trigger: GGCTCCAGCTGTTACCATCCACTCCTCCTTCCAAGT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAAGTCTCATTTCTTGCTaGCCAGACCCATTCCTCTGG +
Preference number: 2 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVISLISC*PDPFLW
Trigger: CCAGAGGAATGGGTCTGGTCAGCAAGAAATGAGACT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCAACTGTGAAACAACTTaGAAGGAGGAGTGGATGGTA +
Preference number: 2 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVNCETT*KEEWMV
Trigger: TACCATCCACTCCTCCTTCCAAGTTGTTTCACAGTT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATTTCCTAAACTGGCCTaGCTCACTTCTCTACTTCAC +
Preference number: 2 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIFPKLA*LTSLLH
Trigger: GTGAAGTAGAGAAGTGAGGCAGGCCAGTTTAGGAAA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAACTACTCAGATGGCTTaGGGCTTTAAGATTGGCTCT +
Preference number: 2 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVITTQMA*GFKIGS
Trigger: AGAGCCAATCTTAAAGCCCCAAGCCATCTGAGTAGT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAAACTGTGAAACAACTTaGAAGGAGGAGTGGATGGTA +
Preference number: 2 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVINCETT*KEEWMV
Trigger: TACCATCCACTCCTCCTTCCAAGTTGTTTCACAGTT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCATTCCTCTGGCACCTaGTACCCCTCTTCCCCAGCG +
Preference number: 3 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDHSSGT*YPSSPA
Trigger: CGCTGGGGAAGAGGGGTACAAGGTGCCAGAGGAATG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATGCGATATGCTCGGCCTaGATTCCAGAGGCAGCTGGA +
Preference number: 3 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDAICSA*IPEAAG
Trigger: TCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCGC...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR TCA 72 bp CCTTGTACCCCTCTTCCCCAGCGATATGCTCGGCCTTaGTTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGG +
Preference number: 3 (lower is better)
Translates to: PCTPLPQRYARP*FQRQLEGSSYG
Trigger: CCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCGCTGGGGAAGAGGGGTACAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 72 bp TCCTCTGGCACCTTGTACCCCTCTTCCCCAGCGATATaGTCGGCCTTGATTCCAGAGGCAGCTGGAAGGAAG +
Preference number: 3 (lower is better)
Translates to: SSGTLYPSSPAI*SALIPEAAGRK
Trigger: CTTCCTTCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCGCTGGGGAAGAGGGGTACAAGGTGCCAGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR TCA 72 bp GGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTaGTGGGGAGAAGCCAGTCTGCTCTTTGTCTCTCCT +
Preference number: 3 (lower is better)
Translates to: GLLQGCTTGTMH*WGEASLLFVSP
Trigger: AGGAGAGACAAAGAGCAGACTGGCTTCTCCCCATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 72 bp CTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATaGACTGATGGGGAGAAGCCAGTCTGCTCTTTGTCT +
Preference number: 3 (lower is better)
Translates to: LQGSSRGVQQAQ*TDGEKPVCSLS
Trigger: AGACAAAGAGCAGACTGGCTTCTCCCCATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 72 bp TGCCACTCCGCAACCCTATCTGTCCCATTCTTACCCTaGAGTCATGAGTGCATGCTTTTCAGTCACGGAGGC +
Preference number: 3 (lower is better)
Translates to: CHSATLSVPFLP*SHECMLFSHGG
Trigger: GCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGACAGATAGGGTTGCGGAGTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CAA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCATTCCTCTGGCACCTaGTACCCCTCTTCCCCAGCG +
Preference number: 3 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLHSSGT*YPSSPA
Trigger: CGCTGGGGAAGAGGGGTACAAGGTGCCAGAGGAATG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR CCA 72 bp CCCAGCGATATGCTCGGCCTTGATTCCAGAGGCAGCTaGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTT +
Preference number: 3 (lower is better)
Translates to: PSDMLGLDSRGS*KEAAMGSLSSV
Trigger: AACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCGCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 72 bp TATCTGTCCCATTCTTACCCTGCAGTCATGAGTGCATaGTTTTCAGTCACGGAGGCCGTCCTGCTCTTAGGA +
Preference number: 3 (lower is better)
Translates to: YLSHSYPAVMSA*FSVTEAVLLLG
Trigger: TCCTAAGAGCAGGACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGACAGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAAGGGGTATGGGTGACTaGCTAACTCTCACCTGCTCA +
Preference number: 3 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIRGMGD*LTLTCS
Trigger: TGAGCAGGTGAGAGTTAGCAAGTCACCCATACCCCT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR TCA 72 bp AGATTTACATCTTTCTCCAAGGCCGGAGGCCAGTCATaGCCACAAGTCTCATTTCTTGCTGACCAGACCCAT +
Preference number: 3 (lower is better)
Translates to: RFTSFSKAGGQS*PQVSFLADQTH
Trigger: ATGGGTCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAAATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAAAGCCAGTCTGCTCTTaGTCTCTCCTACAGAACAGT +
Preference number: 3 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIKPVCS*SLLQNS
Trigger: ACTGTTCTGTAGGAGAGACAAAGAGCAGACTGGCTT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 72 bp GATTACCCAGACCACTGGATGTTTCCTAAACTGGCCTaGCTCACTTCTCTACTTCACAGGGCTATCATTAAA +
Preference number: 3 (lower is better)
Translates to: DYPDHWMFPKLA*LTSLLHRAIIK
Trigger: TTTAATGATAGCCCTGTGAAGTAGAGAAGTGAGGCAGGCCAGTTTAGGAAACATCCAGTGGTCTGGGTAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 72 bp TCACAGTATATCTTGTCCAAAAGAAGTACGGTCCACTaGAGCACCAGGGATCACACTGTCATACACTCACTA +
Preference number: 3 (lower is better)
Translates to: SQYILSKRSTVH*STRDHTVIHSL
Trigger: TAGTGAGTGTATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGATATACTGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR CCA 72 bp CTATCATTAAACTGTGAAACAACTTGGAAGGAGGAGTaGATGGTAACAGCTGGAGCCCAGTCCATCCCAAAT +
Preference number: 3 (lower is better)
Translates to: LSLNCETTWKEE*MVTAGAQSIPN
Trigger: ATTTGGGATGGACTGGGCTCCAGCTGTTACCATCCACTCCTCCTTCCAAGTTGTTTCACAGTTTAATGATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACTTCAACACAAGTCATaGCACTTAGAACCGTTACTA +
Preference number: 3 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVILQHKS*HLEPLL
Trigger: TAGTAACGGTTCTAAGTGCAATGACTTGTGTTGAAG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR GCA 72 bp ACCCTTAACAGCAGGGAGAAACTTCTTTATAGTCTCTaGTTCAGACAAGATTTACATCTTTCTCCAAGGCCG +
Preference number: 3 (lower is better)
Translates to: TLNSREKLLYSL*FRQDLHLSPRP
Trigger: CGGCCTTGGAGAAAGATGTAAATCTTGTCTGAAGCAGAGACTATAAAGAAGTTTCTCCCTGCTGTTAAGGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCCGGCTGAGGATCCCTaGACACCATGGGCACCAGTG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDPAEDP*TPWAPV
Trigger: CACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCGG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAGTGCCCCTGGAATCTaGCGGGCTTACCGCCTCCAA +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDSAPGI*RAYRLQ
Trigger: TTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCACT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCCAGGTGTGGTCAGCTaGGGACTCTTTGAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDPGVVS*GLFEPE
Trigger: CTCAGGCTCAAAGAGTCCCCAGCTGACCACACCTGG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTCCTTTAGAGAGTGCTaGGCTCAATGGCTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDSFREC*AQWLWA
Trigger: GGCCCAGAGCCATTGAGCTCAGCACTCTCTAAAGGA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAGAGAGGGAGGATTCTaGAGAACCGTGAGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDREGGF*RTVRGR
Trigger: CCTCCCTCTCACGGTTCTTCAGAATCCTCCCTCTCT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAGGGCTAGCAGCACTTaGAGAACAGCTCCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDRASST*RTAPPW
Trigger: CCAAGGAGGAGCTGTTCTTCAAGTGCTGCTAGCCCT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATGTTCCTGTGCTGGACTaGGAAACCGAGTCTGAGGTC +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDVPVLD*ETESEV
Trigger: GACCTCAGACTCGGTTTCTCAGTCCAGCACAGGAAC...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACCGGCTGAGGATCCCTaGACACCATGGGCACCAGTG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRPAEDP*TPWAPV
Trigger: CACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCGG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCCGGCTGAGGATCCCTaGACACCATGGGCACCAGTG +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPPAEDP*TPWAPV
Trigger: CACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCGG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATACACTCCTCTTCTCCTaGGTGAGTCTGGCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDTLLFS*VSLARC
Trigger: ACACCTGGCCAGACTCACCCAGGAGAAGAGGAGTGT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCACCACCAGGTGACATaGATCCCCGAGAGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDHHQVT*IPERGL
Trigger: AAGACCTCTCTCGGGGATCCATGTCACCTGGTGGTG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATACTGCTATCCCCACCTaGTATGTTGTCCTGCTTCCG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDTAIPT*YVVLLP
Trigger: CGGAAGCAGGACAACATATCAGGTGGGGATAGCAGT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCTCTTGGGGCACAGATaGAGTCTGAGTCATCCCTTC +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDLLGHR*SLSHPF
Trigger: GAAGGGATGACTCAGACTTCATCTGTGCCCCAAGAG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTTTCTCAGCAAGGTCTaGGGACCATCTCCACTCCTG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDFLSKV*GPSPLL
Trigger: CAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCTGAAGGAGGCTTTGTaGTTCTGTCCGTGGACTGTC +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDLKEAL*FCPWTV
Trigger: GACAGTCCACGGACAGAATCACAAAGCCTCCTTCAG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATGGGGACGAACTCTGCTaGAGGAGGCTTTGTGATTCT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDGDELC*RRLCDS
Trigger: AGAATCACAAAGCCTCCTTCAGCAGAGTTCGTCCCC...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGGGTCAGAACGAGGGATaGTCGTCTGGACAGGGGGAG +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEGQNEG*SSGQGE
Trigger: CTCCCCCTGTCCAGACGATCATCCCTCGTTCTGACC...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGACCATCTCCACTCCTaGTTGGGAAGCCAGCCTCGG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRDHLHS*LGSQPR
Trigger: CCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATGGTC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATGAGTTACTGCTGCCTTaGCCAGCTCCTGAAGACTTG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDELLLP*PAPEDL
Trigger: CAAGTCTTCAGGAGCTGGGCAAGGCAGCAGTAACTC...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATGAAGGCTCTCCCTTCTaGGCAACTCTCACACTGCTT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDEGSPF*ATLTLL
Trigger: AAGCAGTGTGAGAGTTGCCCAGAAGGGAGAGCCTTC...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR CAA 72 bp ACCTTGTACCCCTCTTCCCCAGCGATATGCTCGGCCTaGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGG +
Preference number: 4 (lower is better)
Translates to: TLYPSSPAICSA*IPEAAGRKQLW
Trigger: CCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCCGAGCATATCGCTGGGGAAGAGGGGTACAAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAAGTATCTGGTGTGGTaGCTCCCAGAGGGATTGCAA +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDKYLVW*LPEGLQ
Trigger: TTGCAATCCCTCTGGGAGTCACCACACCAGATACTT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTGCACTTGTCACAGTTaGGAAGGAAGCCATCCTGAG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDCTCHS*EGSHPE
Trigger: CTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTTCCGGTTTCCCTTGTaGCAAGCACAGTCCACTTTG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDFRFPL*QAQSTL
Trigger: CAAAGTGGACTGTGCTTGTCACAAGGGAAACCGGAA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCTCAGGCATAAAGGGTaGGCCAAAGCGAATGTAGTG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDLRHKG*AKANVV
Trigger: CACTACATTCGCTTTGGCTCACCCTTTATGCCTGAG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCAGTGCCCCTGGAATCTaGCGGGCTTACCGCCTCCAA +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPSAPGI*RAYRLQ
Trigger: TTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCACT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGCTGAGTCTTGACTCCTaGCCCTTGCAGTGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQELSLDS*PLQWLE
Trigger: CTCCAGCCACTGCAAGGGTCAGGAGTCAAGACTCAG...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGACCATCTCCACTCCTaGTTGGGAAGCCAGCCTCGG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSDHLHS*LGSQPR
Trigger: CCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATGGTC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAAACAGAGTTACTGCTaGCTTGCCCAGCTCCTGAAG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDKQSYC*LAQLLK
Trigger: CTTCAGGAGCTGGGCAAGGCAGCAGTAACTCTGTTT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATGTCTTTGGGCTGAACTaGTCCGGTACCGAGAAATTC +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDVFGLN*SGTEKF
Trigger: GAATTTCTCGGTACCGGACCAGTTCAGCCCAAAGAC...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATGCAATGGCCTGCTTCTaGCGTTTTAGTCTTTGGGCT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDAMACF*RFSLWA
Trigger: AGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGC...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGCCAGGTGTGGTCAGCTaGGGACTCTTTGAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEPGVVS*GLFEPE
Trigger: CTCAGGCTCAAAGAGTCCCCAGCTGACCACACCTGG...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGGAGTCTGGCCAGGTGTaGTCAGCTGGGGACTCTTTG +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEESGQV*SAGDSL
Trigger: CAAAGAGTCCCCAGCTGACCACACCTGGCCAGACTC...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGATCTCCACTCCTGCTTaGGAAGCCAGCCTCGGAGGT +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEISTPA*EASLGG
Trigger: ACCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGAT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAGAACAGCTCCTCCTTaGAAGATTGCTGCCAGTGCT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDRTAPP*KIAASA
Trigger: AGCACTGGCAGCAATCTTCCAAGGAGGAGCTGTTCT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGGCTGGAGTCGGTACTaGTGTACACCCCCACTACCA +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVGWSRY*CTPPLP
Trigger: TGGTAGTGGGGGTGTACACCAGTACCGACTCCAGCC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR CAA 72 bp TCATTTCTTGCTGACCAGACCCATTCCTCTGGCACCTaGTACCCCTCTTCCCCAGCGATATGCTCGGCCTTG +
Preference number: 4 (lower is better)
Translates to: SFLADQTHSSGT*YPSSPAICSAL
Trigger: CAAGGCCGAGCATATCGCTGGGGAAGAGGGGTACAAGGTGCCAGAGGAATGGGTCTGGTCAGCAAGAAATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATACTGGAGACAGAGGCTaGAGCAACTTGGTGATATTC +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDTGDRG*SNLVIF
Trigger: GAATATCACCAAGTTGCTTCAGCCTCTGTCTCCAGT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACTATCAGCGCAGCTGTaGGTGCTGGAGTCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRLSAQL*VLESGN
Trigger: ATTCCCAGACTCCAGCACTCACAGCTGCGCTGATAG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCTATCAGCGCAGCTGTaGGTGCTGGAGTCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVLSAQL*VLESGN
Trigger: ATTCCCAGACTCCAGCACTCACAGCTGCGCTGATAG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCCTTTCACCACCAGGTaGCATGGATCCCCGAGAGAG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPPFTTR*HGSPRE
Trigger: CTCTCTCGGGGATCCATGTCACCTGGTGGTGAAAGG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTCCATCTGCAGGGTCTaGCTCTTTCTCTGTGATGTT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDSICRV*LFLCDV
Trigger: AACATCACAGAGAAAGAGTCAGACCCTGCAGATGGA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATCCTTTAGAGAGTGCTaGGCTCAATGGCTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRSFREC*AQWLWA
Trigger: GGCCCAGAGCCATTGAGCTCAGCACTCTCTAAAGGA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCAGAGAGGGAGGATTCTaGAGAACCGTGAGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVREGGF*RTVRGR
Trigger: CCTCCCTCTCACGGTTCTTCAGAATCCTCCCTCTCT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCAGGGCTAGCAGCACTTaGAGAACAGCTCCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVRASST*RTAPPW
Trigger: CCAAGGAGGAGCTGTTCTTCAAGTGCTGCTAGCCCT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGTTCCTGTGCTGGACTaGGAAACCGAGTCTGAGGTC +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVVPVLD*ETESEV
Trigger: GACCTCAGACTCGGTTTCTCAGTCCAGCACAGGAAC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCTGAGTCTTGACTCCTaGCCCTTGCAGTGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPLSLDS*PLQWLE
Trigger: CTCCAGCCACTGCAAGGGTCAGGAGTCAAGACTCAG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGTCCTGTCTGAGTCTTaGCTCCTGACCCTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRVLSES*LLTLAV
Trigger: CACTGCAAGGGTCAGGAGTCAAGACTCAGACAGGAC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGGTCCTGTCTGAGTCTTaGCTCCTGACCCTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEVLSES*LLTLAV
Trigger: CACTGCAAGGGTCAGGAGTCAAGACTCAGACAGGAC...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGTCCTGTCTGAGTCTTaGCTCCTGACCCTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVVLSES*LLTLAV
Trigger: CACTGCAAGGGTCAGGAGTCAAGACTCAGACAGGAC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACAGTTCTGCCTGTTGTaGAATGGCCTGCTTCTGGCG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRQFCLL*NGLLLA
Trigger: CGCCAGAAGCAGGCCATTGCACAACAGGCAGAACTG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCGCCTCCAAATGCGATaGAGAGGAATGAGACGGGGA +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVRLQMR*RGMRRG
Trigger: TCCCCGTCTCATTCCTCTGCATCGCATTTGGAGGCG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAAGTGAGAGGAAGAAGTaGCCCTGGAATCTGACGGGC +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRSERKK*PWNLTG
Trigger: GCCCGTCAGATTCCAGGGGCACTTCTTCCTCTCACT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCAGTGAGAGGAAGAAGTaGCCCTGGAATCTGACGGGC +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVSERKK*PWNLTG
Trigger: GCCCGTCAGATTCCAGGGGCACTTCTTCCTCTCACT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAACTCAGAGTTCCTGTaGTGGACTGAGAAACCGAGT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDNSEFL*WTEKPS
Trigger: ACTCGGTTTCTCAGTCCAGCACAGGAACTCTGAGTT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTTGACTCCTGACCCTTaGAGTGGCTGGAGTCGGTAC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPLTPDP*SGWSRY
Trigger: GTACCGACTCCAGCCACTGCAAGGGTCAGGAGTCAA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCAGGAGGAGGTGGGAGTaGCAATTCTGCAGCATTGGG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVRRRWE*QFCSIG
Trigger: CCCAATGCTGCAGAATTGCCACTCCCACCTCCTCCT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTTCTGGAACTTCTTGTaGTTGCGGGTCAGGATTCTC +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDFWNFL*LRVRIL
Trigger: GAGAATCCTGACCCGCAACCACAAGAAGTTCCAGAA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCACACCAGTGCTCTGTaGGGTGCTTGGGATAGCAAC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPHTSAL*GAWDSN
Trigger: GTTGCTATCCCAAGCACCCCACAGAGCACTGGTGTG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACCAGGTGTGGTCAGCTaGGGACTCTTTGAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSPGVVS*GLFEPE
Trigger: CTCAGGCTCAAAGAGTCCCCAGCTGACCACACCTGG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAACACTCCTCTTCTCCTaGGTGAGTCTGGCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRTLLFS*VSLARC
Trigger: ACACCTGGCCAGACTCACCCAGGAGAAGAGGAGTGT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCGCAGCTGTGAGTGCTaGAGTCTGGGAATCCCACTT +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPRSCEC*SLGIPL
Trigger: AAGTGGGATTCCCAGACTCCAGCACTCACAGCTGCG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAATCTCCACTCCTGCTTaGGAAGCCAGCCTCGGAGGT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSISTPA*EASLGG
Trigger: ACCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGAT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTCTGTCCTAAACGCCTaGTCTGAGTTTCTCAGCAAG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDSVLNA*SEFLSK
Trigger: CTTGCTGAGAAACTCAGACCAGGCGTTTAGGACAGA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCATGTTCATATCTGCTaGAAAAGCCTTCAGCAGGGG +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDHVHIC*KSLQQG
Trigger: CCCCTGCTGAAGGCTTTTCCAGCAGATATGAACATG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAAGGAAGAAGTGCCCCTaGAATCTGACGGGCTTACCG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRRKKCP*NLTGLP
Trigger: CGGTAAGCCCGTCAGATTCCAGGGGCACTTCTTCCT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGGCTGGAGTCGGTACTaGTGTACACCCCCACTACCA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSGWSRY*CTPPLP
Trigger: TGGTAGTGGGGGTGTACACCAGTACCGACTCCAGCC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGGCTGGAGTCGGTACTaGTGTACACCCCCACTACCA +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPGWSRY*CTPPLP
Trigger: TGGTAGTGGGGGTGTACACCAGTACCGACTCCAGCC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGACCCTTGCAGTGGCTaGAGTCGGTACTGGTGTACA +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVDPCSG*SRYWCT
Trigger: TGTACACCAGTACCGACTCCAGCCACTGCAAGGGTC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTCCTGCTTCCGCCGATaGAGTCTAATAACCTTCCCC +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQESCFRR*SLITFP
Trigger: GGGGAAGGTTATTAGACTTCATCGGCGGAAGCAGGA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTCCTGCTTCCGCCGATaGAGTCTAATAACCTTCCCC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPSCFRR*SLITFP
Trigger: GGGGAAGGTTATTAGACTTCATCGGCGGAAGCAGGA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCGAGTCCTTCTGCTATaGGCAGAGTTCTCCTGGTCA +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVRVLLL*AEFSWS
Trigger: TGACCAGGAGAACTCTGCTCATAGCAGAAGGACTCG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCGAGTCCTTCTGCTATaGGCAGAGTTCTCCTGGTCA +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPRVLLL*AEFSWS
Trigger: TGACCAGGAGAACTCTGCTCATAGCAGAAGGACTCG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCTCTTGGGGCACAGATaGAGTCTGAGTCATCCCTTC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPLLGHR*SLSHPF
Trigger: GAAGGGATGACTCAGACTTCATCTGTGCCCCAAGAG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGCCTTGCCCAGCTCCTaGAGACTTGCTTTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPALPSS*RLAFAL
Trigger: CAGAGCAAAAGCAAGTCTTCAGGAGCTGGGCAAGGC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGAGTGCCCCTGGAATCTaGCGGGCTTACCGCCTCCAA +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLSAPGI*RAYRLQ
Trigger: TTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCACT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCCTTTAGAGAGTGCTaGGCTCAATGGCTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSFREC*AQWLWA
Trigger: GGCCCAGAGCCATTGAGCTCAGCACTCTCTAAAGGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACTGAAGGAGGCTTTGTaGTTCTGTCCGTGGACTGTC +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRLKEAL*FCPWTV
Trigger: GACAGTCCACGGACAGAATCACAAAGCCTCCTTCAG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGGGGACGAACTCTGCTaGAGGAGGCTTTGTGATTCT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRGDELC*RRLCDS
Trigger: AGAATCACAAAGCCTCCTTCAGCAGAGTTCGTCCCC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCAGAGAGGGAGGATTCTaGAGAACCGTGAGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPREGGF*RTVRGR
Trigger: CCTCCCTCTCACGGTTCTTCAGAATCCTCCCTCTCT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCAGGGCTAGCAGCACTTaGAGAACAGCTCCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPRASST*RTAPPW
Trigger: CCAAGGAGGAGCTGTTCTTCAAGTGCTGCTAGCCCT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGTTCCTGTGCTGGACTaGGAAACCGAGTCTGAGGTC +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPVPVLD*ETESEV
Trigger: GACCTCAGACTCGGTTTCTCAGTCCAGCACAGGAAC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGGTCAGAACGAGGGATaGTCGTCTGGACAGGGGGAG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLGQNEG*SSGQGE
Trigger: CTCCCCCTGTCCAGACGATCATCCCTCGTTCTGACC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAGCTTTCTGTTGCACTaGTATCCCCACCTGATATGT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDSFLLH*YPHLIC
Trigger: ACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCTTCCCAGCTGTAACTaGATTTGGGAACCGATTACT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDLPSCN*IWEPIT
Trigger: AGTAATCGGTTCCCAAATGCAGTTACAGCTGGGAAG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCAGCTCTTTCCGCCGTaGTTTTCTACGTCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPQLFPP*FSTSGL
Trigger: GAGACCAGACGTAGAAAAGCACGGCGGAAAGAGCTG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCAGTTCTGCCTGTTGTaGAATGGCCTGCTTCTGGCG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPQFCLL*NGLLLA
Trigger: CGCCAGAAGCAGGCCATTGCACAACAGGCAGAACTG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAAGCTTGCGACAGTTCTaGCTGTTGTGCAATGGCCTG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRSLRQF*LLCNGL
Trigger: CAGGCCATTGCACAACAGGCAGAACTGTCGCAAGCT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTTTGGGGTATTTAGATaGAGCACGGTTGACATGGGA +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDFGVFR*STVDMG
Trigger: TCCCATGTCAACCGTGCTGCATCTAAATACCCCAAA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGAGTTACTGCTGCCTTaGCCAGCTCCTGAAGACTTG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVELLLP*PAPEDL
Trigger: CAAGTCTTCAGGAGCTGGGCAAGGCAGCAGTAACTC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACGCCTCCAAATGCGATaGAGAGGAATGAGACGGGGA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSRLQMR*RGMRRG
Trigger: TCCCCGTCTCATTCCTCTGCATCGCATTTGGAGGCG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCTGTGTACAACACAGTaGAAGGAGAAAGCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDLCTTQ*KEKAPH
Trigger: ATGAGGAGCTTTCTCCTTCCACTGTGTTGTACACAG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAAGGAGGAGGTGGGAGTaGCAATTCTGCAGCATTGGG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSRRRWE*QFCSIG
Trigger: CCCAATGCTGCAGAATTGCCACTCCCACCTCCTCCT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCAAAGCTAGGAGGAGGTaGGAGTGGCAATTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVKARRR*EWQFCS
Trigger: GCTGCAGAATTGCCACTCCCACCTCCTCCTAGCTTT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGAAAGCTAGGAGGAGGTaGGAGTGGCAATTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEKARRR*EWQFCS
Trigger: GCTGCAGAATTGCCACTCCCACCTCCTCCTAGCTTT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCAAAGCTAGGAGGAGGTaGGAGTGGCAATTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPKARRR*EWQFCS
Trigger: GCTGCAGAATTGCCACTCCCACCTCCTCCTAGCTTT...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTGGGGGTGGTGTAACTaGAGACAGAGGCTGAAGCAA +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVWGWCN*RQRLKQ
Trigger: TTGCTTCAGCCTCTGTCTCCAGTTACACCACCCCCA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTGGGGGTGGTGTAACTaGAGACAGAGGCTGAAGCAA +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPWGWCN*RQRLKQ
Trigger: TTGCTTCAGCCTCTGTCTCCAGTTACACCACCCCCA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCACCACCAGGTGACATaGATCCCCGAGAGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPHHQVT*IPERGL
Trigger: AAGACCTCTCTCGGGGATCCATGTCACCTGGTGGTG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGTTCTGAGGAGCAGATaGGACTCCTTCACAGGTCCT +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVVLRSR*DSFTGP
Trigger: AGGACCTGTGAAGGAGTCCCATCTGCTCCTCAGAAC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCGTTCTGAGGAGCAGATaGGACTCCTTCACAGGTCCT +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPVLRSR*DSFTGP
Trigger: AGGACCTGTGAAGGAGTCCCATCTGCTCCTCAGAAC...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAAGGAAGAAGTGCCCCTaGAATCTGACGGGCTTACCG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSRKKCP*NLTGLP
Trigger: CGGTAAGCCCGTCAGATTCCAGGGGCACTTCTTCCT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGAAGGCTCTCCCTTCTaGGCAACTCTCACACTGCTT +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVEGSPF*ATLTLL
Trigger: AAGCAGTGTGAGAGTTGCCCAGAAGGGAGAGCCTTC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTGGAGTCCCCGTAAATaGGGCCAACGAGTCTGTAGA +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPWSPRK*GQRVCR
Trigger: TCTACAGACTCGTTGGCCCCATTTACGGGGACTCCA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGCTGCTGTAATACCCTaGAGTCCCCGTAAATGGGGC +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPAAVIP*SPRKWG
Trigger: GCCCCATTTACGGGGACTCCAGGGTATTACAGCAGC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGCTGCTGTAATACCCTaGAGTCCCCGTAAATGGGGC +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSAAVIP*SPRKWG
Trigger: GCCCCATTTACGGGGACTCCAGGGTATTACAGCAGC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGACCCTTGCAGTGGCTaGAGTCGGTACTGGTGTACA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSDPCSG*SRYWCT
Trigger: TGTACACCAGTACCGACTCCAGCCACTGCAAGGGTC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGAAGTATCTGGTGTGGTaGCTCCCAGAGGGATTGCAA +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEKYLVW*LPEGLQ
Trigger: TTGCAATCCCTCTGGGAGTCACCACACCAGATACTT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTGCACTTGTCACAGTTaGGAAGGAAGCCATCCTGAG +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQECTCHS*EGSHPE
Trigger: CTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCCTGCTTCCGCCGATaGAGTCTAATAACCTTCCCC +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSCFRR*SLITFP
Trigger: GGGGAAGGTTATTAGACTTCATCGGCGGAAGCAGGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAACTGCTATCCCCACCTaGTATGTTGTCCTGCTTCCG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSTAIPT*YVVLLP
Trigger: CGGAAGCAGGACAACATATCAGGTGGGGATAGCAGT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCACTGCTATCCCCACCTaGTATGTTGTCCTGCTTCCG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPTAIPT*YVVLLP
Trigger: CGGAAGCAGGACAACATATCAGGTGGGGATAGCAGT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTTCCGGTTTCCCTTGTaGCAAGCACAGTCCACTTTG +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEFRFPL*QAQSTL
Trigger: CAAAGTGGACTGTGCTTGTCACAAGGGAAACCGGAA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACTCAGGCATAAAGGGTaGGCCAAAGCGAATGTAGTG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRLRHKG*AKANVV
Trigger: CACTACATTCGCTTTGGCTCACCCTTTATGCCTGAG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACTCTTGGGGCACAGATaGAGTCTGAGTCATCCCTTC +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSLLGHR*SLSHPF
Trigger: GAAGGGATGACTCAGACTTCATCTGTGCCCCAAGAG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCTTTCTCAGCAAGGTCTaGGGACCATCTCCACTCCTG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPFLSKV*GPSPLL
Trigger: CAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAA...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACCTTTCACCACCAGGTaGCATGGATCCCCGAGAGAG +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIPFTTR*HGSPRE
Trigger: CTCTCTCGGGGATCCATGTCACCTGGTGGTGAAAGG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCCTTTCACCACCAGGTaGCATGGATCCCCGAGAGAG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLPFTTR*HGSPRE
Trigger: CTCTCTCGGGGATCCATGTCACCTGGTGGTGAAAGG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCTTGCTTTTGCTCTGTaGAGAGTCATTTCCCCCACC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPLAFAL*RVISPT
Trigger: GGTGGGGGAAATGACTCTTCACAGAGCAAAAGCAAG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCCATCCACCTACTGCTaGTGTTTTCTTGAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPPSTYC*CFLEVC
Trigger: GCAGACCTCAAGAAAACATCAGCAGTAGGTGGATGG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
52% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCCATCCACCTACTGCTaGTGTTTTCTTGAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVPSTYC*CFLEVC
Trigger: GCAGACCTCAAGAAAACATCAGCAGTAGGTGGATGG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTCGGAGTCGTTCAACTaGTGTAGGAACCATCCACCT +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVSESFN*CRNHPP
Trigger: AGGTGGATGGTTCCTACATCAGTTGAACGACTCCGA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGGGGACGAACTCTGCTaGAGGAGGCTTTGTGATTCT +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPGDELC*RRLCDS
Trigger: AGAATCACAAAGCCTCCTTCAGCAGAGTTCGTCCCC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGAGTCTTGACTCCTaGCCCTTGCAGTGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLLSLDS*PLQWLE
Trigger: CTCCAGCCACTGCAAGGGTCAGGAGTCAAGACTCAG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCTTCGTCTTTGGTGCTaGACGACCCTTTTCTGGACT +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPLRLWC*TTLFWT
Trigger: AGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTCTACGTCTGGTCTCTaGTCCAATGGTGGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVSTSGL*SNGGKA
Trigger: AGCTTTCCCACCATTGGAGCAGAGACCAGACGTAGA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTCTGGAACCTCATTTTaGTGCTCCAGCTCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPSGTSF*CSSSSS
Trigger: AGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCAGGGATTGGCTTTTCTaGAGCTACATCCCCAGCATG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVRDWLF*SYIPSM
Trigger: CATGCTGGGGATGTAGCTGCAGAAAAGCCAATCCCT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAAGGGATTGGCTTTTCTaGAGCTACATCCCCAGCATG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRRDWLF*SYIPSM
Trigger: CATGCTGGGGATGTAGCTGCAGAAAAGCCAATCCCT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCAGGGATTGGCTTTTCTaGAGCTACATCCCCAGCATG +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPRDWLF*SYIPSM
Trigger: CATGCTGGGGATGTAGCTGCAGAAAAGCCAATCCCT...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTCTATACAGTCCATCTaGTCGAGGCATAGCATTCAA +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDSIQSI*SRHSIQ
Trigger: TTGAATGCTATGCCTCGAGCAGATGGACTGTATAGA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATCCTCCTTGGAAGATTaGTGCCAGTGCTGTTTCCAG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRSSLED*CQCCFQ
Trigger: CTGGAAACAGCACTGGCAGCAATCTTCCAAGGAGGA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGTGCTTTTCTACGTCTaGTCTCTGCTCCAATGGTGG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVVLFYV*SLLQWW
Trigger: CCACCATTGGAGCAGAGACCAGACGTAGAAAAGCAC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATGGCGTTTTAGTCTTTaGGCTGAACTGGTCCGGTAC +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRWRFSL*AELVRY
Trigger: GTACCGGACCAGTTCAGCCCAAAGACTAAAACGCCA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTGGCGTTTTAGTCTTTaGGCTGAACTGGTCCGGTAC +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEWRFSL*AELVRY
Trigger: GTACCGGACCAGTTCAGCCCAAAGACTAAAACGCCA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATGGGGGTGGTGTAACTaGAGACAGAGGCTGAAGCAA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSWGWCN*RQRLKQ
Trigger: TTGCTTCAGCCTCTGTCTCCAGTTACACCACCCCCA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAAGCCAGCCTCGGAGGTaGGAACAACAGAGGGATGAG +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVISQPRR*EQQRDE
Trigger: CTCATCCCTCTGTTGTTCCCACCTCCGAGGCTGGCT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTCTGAGGAGCAGATaGGACTCCTTCACAGGTCCT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSVLRSR*DSFTGP
Trigger: AGGACCTGTGAAGGAGTCCCATCTGCTCCTCAGAAC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGAAGGCTCTCCCTTCTaGGCAACTCTCACACTGCTT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSEGSPF*ATLTLL
Trigger: AAGCAGTGTGAGAGTTGCCCAGAAGGGAGAGCCTTC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATGGAGTCCCCGTAAATaGGGCCAACGAGTCTGTAGA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSWSPRK*GQRVCR
Trigger: TCTACAGACTCGTTGGCCCCATTTACGGGGACTCCA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGAGAACAGCTCCTCCTTaGAAGATTGCTGCCAGTGCT +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQERTAPP*KIAASA
Trigger: AGCACTGGCAGCAATCTTCCAAGGAGGAGCTGTTCT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTCAGAGTTCCTGTGCTaGACTGAGAAACCGAGTCTG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVSEFLC*TEKPSL
Trigger: CAGACTCGGTTTCTCAGTCCAGCACAGGAACTCTGA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTCAGAGTTCCTGTGCTaGACTGAGAAACCGAGTCTG +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPSEFLC*TEKPSL
Trigger: CAGACTCGGTTTCTCAGTCCAGCACAGGAACTCTGA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTCCAGCAGCCATATCTaGGTAGGAAGTATCTGGTGT +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQESSSHI*VGSIWC
Trigger: ACACCAGATACTTCCTACTCAGATATGGCTGCTGGA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCTGCACTTGTCACAGTTaGGAAGGAAGCCATCCTGAG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPCTCHS*EGSHPE
Trigger: CTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCA...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGCCGAGGGAGAATTCTTaGTCTTCTTCGTCTTTGGTG +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEPRENS*SSSSLV
Trigger: CACCAAAGACGAAGAAGATCAAGAATTCTCCCTCGG...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCCGAGGGAGAATTCTTaGTCTTCTTCGTCTTTGGTG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVPRENS*SSSSLV
Trigger: CACCAAAGACGAAGAAGATCAAGAATTCTCCCTCGG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGCTTTTGAACACGAGTaGCTCTTCCCAGCTGTAACT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRAFEHE*LFPAVT
Trigger: AGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGATTTTCCGGTGCTTTTaGACACGAGTGACTCTTCCC +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEIFRCF*TRVTLP
Trigger: GGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAAT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAATTTTCCGGTGCTTTTaGACACGAGTGACTCTTCCC +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRIFRCF*TRVTLP
Trigger: GGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAAT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTCCAACTACTATCTCTaGACTGCTAGTAGTAATCTC +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDSNYYL*TASSNL
Trigger: GAGATTACTACTAGCAGTTCAGAGATAGTAGTTGGA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCTGTCTGTTCTCTCCTaGACTGTCTGTATTTCCAGC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPLSVLS*TVCISS
Trigger: GCTGGAAATACAGACAGTTCAGGAGAGAACAGACAG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACTCAGGCATAAAGGGTaGGCCAAAGCGAATGTAGTG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSLRHKG*AKANVV
Trigger: CACTACATTCGCTTTGGCTCACCCTTTATGCCTGAG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAACTGGAGACAGAGGCTaGAGCAACTTGGTGATATTC +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRTGDRG*SNLVIF
Trigger: GAATATCACCAAGTTGCTTCAGCCTCTGTCTCCAGT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACTATCAGCGCAGCTGTaGGTGCTGGAGTCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVILSAQL*VLESGN
Trigger: ATTCCCAGACTCCAGCACTCACAGCTGCGCTGATAG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCTTGCTTTTGCTCTGTaGAGAGTCATTTCCCCCACC +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPLAFAL*RVISPT
Trigger: GGTGGGGGAAATGACTCTTCACAGAGCAAAAGCAAG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACTTGCTTTTGCTCTGTaGAGAGTCATTTCCCCCACC +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSLAFAL*RVISPT
Trigger: GGTGGGGGAAATGACTCTTCACAGAGCAAAAGCAAG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGCCTTGCCCAGCTCCTaGAGACTTGCTTTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLALPSS*RLAFAL
Trigger: CAGAGCAAAAGCAAGTCTTCAGGAGCTGGGCAAGGC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCCATCCACCTACTGCTaGTGTTTTCTTGAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPPSTYC*CFLEVC
Trigger: GCAGACCTCAAGAAAACATCAGCAGTAGGTGGATGG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCGGAGTCGTTCAACTaGTGTAGGAACCATCCACCT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSESFN*CRNHPP
Trigger: AGGTGGATGGTTCCTACATCAGTTGAACGACTCCGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCTCGGAGTCGTTCAACTaGTGTAGGAACCATCCACCT +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPSESFN*CRNHPP
Trigger: AGGTGGATGGTTCCTACATCAGTTGAACGACTCCGA...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATCCATCTGCAGGGTCTaGCTCTTTCTCTGTGATGTT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRSICRV*LFLCDV
Trigger: AACATCACAGAGAAAGAGTCAGACCCTGCAGATGGA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGCTCTTCTCATTAACTaGTGGACTAGCCTCCACAGA +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVALLIN*WTSLHR
Trigger: TCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACTTCTTCGTCTTTGGTaGTGCACGACCCTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSLLRLW*CTTLFW
Trigger: CCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAAG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCTTCTTCGTCTTTGGTaGTGCACGACCCTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPLLRLW*CTTLFW
Trigger: CCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAAG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCTACGTCTGGTCTCTaGTCCAATGGTGGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSTSGL*SNGGKA
Trigger: AGCTTTCCCACCATTGGAGCAGAGACCAGACGTAGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCTCTGGAACCTCATTTTaGTGCTCCAGCTCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPSGTSF*CSSSSS
Trigger: AGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGA...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCTGGAACCTCATTTTaGTGCTCCAGCTCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSGTSF*CSSSSS
Trigger: AGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGGAACTTCTTGTGGTTaGGGGTCAGGATTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRGTSCG*GSGFSS
Trigger: AGAAGAGAATCCTGACCCGCAACCACAAGAAGTTCC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCAGTTCTGCCTGTTGTaGAATGGCCTGCTTCTGGCG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLQFCLL*NGLLLA
Trigger: CGCCAGAAGCAGGCCATTGCACAACAGGCAGAACTG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCTGAAGACTTGCTTTTaGTCTGTGAAGAGTCATTTC +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDLKTCF*SVKSHF
Trigger: GAAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCAAACAGAGTTACTGCTaGCTTGCCCAGCTCCTGAAG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPKQSYC*LAQLLK
Trigger: CTTCAGGAGCTGGGCAAGGCAGCAGTAACTCTGTTT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACGCCTCCAAATGCGATaGAGAGGAATGAGACGGGGA +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIRLQMR*RGMRRG
Trigger: TCCCCGTCTCATTCCTCTGCATCGCATTTGGAGGCG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGAGTGAGAGGAAGAAGTaGCCCTGGAATCTGACGGGC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLSERKK*PWNLTG
Trigger: GCCCGTCAGATTCCAGGGGCACTTCTTCCTCTCACT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCTCCTCCTTGGAAGATTaGTGCCAGTGCTGTTTCCAG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPSSLED*CQCCFQ
Trigger: CTGGAAACAGCACTGGCAGCAATCTTCCAAGGAGGA...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAAACTCAGAGTTCCTGTaGTGGACTGAGAAACCGAGT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRNSEFL*WTEKPS
Trigger: ACTCGGTTTCTCAGTCCAGCACAGGAACTCTGAGTT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCAACTCAGAGTTCCTGTaGTGGACTGAGAAACCGAGT +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVNSEFL*WTEKPS
Trigger: ACTCGGTTTCTCAGTCCAGCACAGGAACTCTGAGTT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTTGACTCCTGACCCTTaGAGTGGCTGGAGTCGGTAC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLLTPDP*SGWSRY
Trigger: GTACCGACTCCAGCCACTGCAAGGGTCAGGAGTCAA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATTGACTCCTGACCCTTaGAGTGGCTGGAGTCGGTAC +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVILTPDP*SGWSRY
Trigger: GTACCGACTCCAGCCACTGCAAGGGTCAGGAGTCAA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAACCCATGCCTCTGAGTaGTCCCATAATTATGAGTGG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRTHASE*SHNYEW
Trigger: CCACTCATAATTATGGGACCACTCAGAGGCATGGGT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGATCTTCTTCGTCTTTaGTGCTGCACGACCCTTTTC +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVDLLRL*CCTTLF
Trigger: GAAAAGGGTCGTGCAGCACCAAAGACGAAGAAGATC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAATTCCTTGTTAGAATaGAGATGTTGCTCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDNSLLE*RCCSRA
Trigger: TGCCCTTGAGCAACATCTCCATTCTAACAAGGAATT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGAGGAGGAGGTGGGAGTaGCAATTCTGCAGCATTGGG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLRRRWE*QFCSIG
Trigger: CCCAATGCTGCAGAATTGCCACTCCCACCTCCTCCT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTTCTGGAACTTCTTGTaGTTGCGGGTCAGGATTCTC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPFWNFL*LRVRIL
Trigger: GAGAATCCTGACCCGCAACCACAAGAAGTTCCAGAA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACACACCAGTGCTCTGTaGGGTGCTTGGGATAGCAAC +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIHTSAL*GAWDSN
Trigger: GTTGCTATCCCAAGCACCCCACAGAGCACTGGTGTG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAAGGCTTAGCTGGAGGTaGTTTAGGGATTGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRRLSWR*FRDWLF
Trigger: GAAAAGCCAATCCCTAAACCACCTCCAGCTAAGCCT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGAGGCTTAGCTGGAGGTaGTTTAGGGATTGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQERLSWR*FRDWLF
Trigger: GAAAAGCCAATCCCTAAACCACCTCCAGCTAAGCCT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATCTAGAAGGCTTAGCTaGAGGTGGTTTAGGGATTGG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRSRRLS*RWFRDW
Trigger: CCAATCCCTAAACCACCTCCAGCTAAGCCTTCTAGA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTCTAGAAGGCTTAGCTaGAGGTGGTTTAGGGATTGG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVSRRLS*RWFRDW
Trigger: CCAATCCCTAAACCACCTCCAGCTAAGCCTTCTAGA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGTCTTTGGGCTGAACTaGTCCGGTACCGAGAAATTC +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPVFGLN*SGTEKF
Trigger: GAATTTCTCGGTACCGGACCAGTTCAGCCCAAAGAC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGCAATGGCCTGCTTCTaGCGTTTTAGTCTTTGGGCT +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPAMACF*RFSLWA
Trigger: AGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACTGCCTGTTGTGCAATaGCCTGCTTCTGGCGTTTTA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSLPVVQ*PASGVL
Trigger: TAAAACGCCAGAAGCAGGCCATTGCACAACAGGCAG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCGCAGCACGGTTGACATaGGATCCAGTAACTGATATC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPAARLT*DPVTDI
Trigger: GATATCAGTTACTGGATCCCATGTCAACCGTGCTGC...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGCAGCACGGTTGACATaGGATCCAGTAACTGATATC +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRAARLT*DPVTDI
Trigger: GATATCAGTTACTGGATCCCATGTCAACCGTGCTGC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGGTGAGTGCTGGAGTCTaGGAATCCCACTTTTGTCAA +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEVSAGV*ESHFCQ
Trigger: TTGACAAAAGTGGGATTCCCAGACTCCAGCACTCAC...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGTGAGTGCTGGAGTCTaGGAATCCCACTTTTGTCAA +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRVSAGV*ESHFCQ
Trigger: TTGACAAAAGTGGGATTCCCAGACTCCAGCACTCAC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCGCAGCTGTGAGTGCTaGAGTCTGGGAATCCCACTT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLRSCEC*SLGIPL
Trigger: AAGTGGGATTCCCAGACTCCAGCACTCACAGCTGCG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATCTGTCCTAAACGCCTaGTCTGAGTTTCTCAGCAAG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRSVLNA*SEFLSK
Trigger: CTTGCTGAGAAACTCAGACCAGGCGTTTAGGACAGA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCACCACCAGGTGACATaGATCCCCGAGAGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLHHQVT*IPERGL
Trigger: AAGACCTCTCTCGGGGATCCATGTCACCTGGTGGTG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGAGGAAGAAGTGCCCCTaGAATCTGACGGGCTTACCG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLRKKCP*NLTGLP
Trigger: CGGTAAGCCCGTCAGATTCCAGGGGCACTTCTTCCT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGTTACTCTCCCATGTTaGAGAAGGCTCTCCCTTCTG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPVTLPC*RRLSLL
Trigger: CAGAAGGGAGAGCCTTCTCCAACATGGGAGAGTAAC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTACTCTCCCATGTTaGAGAAGGCTCTCCCTTCTG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSVTLPC*RRLSLL
Trigger: CAGAAGGGAGAGCCTTCTCCAACATGGGAGAGTAAC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCTGTATCCTGGAGATTaGGTGGGATGTCCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPLYPGD*VGCPLK
Trigger: CTTTAGAGGACATCCCACCCAATCTCCAGGATACAG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGCTGCTGTAATACCCTaGAGTCCCCGTAAATGGGGC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLAAVIP*SPRKWG
Trigger: GCCCCATTTACGGGGACTCCAGGGTATTACAGCAGC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAGACCCTTGCAGTGGCTaGAGTCGGTACTGGTGTACA +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIDPCSG*SRYWCT
Trigger: TGTACACCAGTACCGACTCCAGCCACTGCAAGGGTC...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCGAGTCCTTCTGCTATaGGCAGAGTTCTCCTGGTCA +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLRVLLL*AEFSWS
Trigger: TGACCAGGAGAACTCTGCTCATAGCAGAAGGACTCG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTTCAGGAGGAGTTACTaGGTTGTTACTTCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEFRRSY*VVTSSF
Trigger: GAAGGAGGAAGTAACAACTCAGTAACTCCTCCTGAA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTTCAGGAGGAGTTACTaGGTTGTTACTTCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVFRRSY*VVTSSF
Trigger: GAAGGAGGAAGTAACAACTCAGTAACTCCTCCTGAA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGATGGGATCCAGTAACTaGTATCACAGTTGGGTCAGA +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEMGSSN*YHSWVR
Trigger: TCTGACCCAACTGTGATATCAGTTACTGGATCCCAT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGCTGAAGCAACTTGGTaGTATTCTGCTCCATCAGAT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRAEATW*YSAPSD
Trigger: ATCTGATGGAGCAGAATATCACCAAGTTGCTTCAGC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGGCTGAAGCAACTTGGTaGTATTCTGCTCCATCAGAT +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEAEATW*YSAPSD
Trigger: ATCTGATGGAGCAGAATATCACCAAGTTGCTTCAGC...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCACTGGAGACAGAGGCTaGAGCAACTTGGTGATATTC +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPTGDRG*SNLVIF
Trigger: GAATATCACCAAGTTGCTTCAGCCTCTGTCTCCAGT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCTGACTCTTTCTCTGTaGTGTTACTCTCCCATGTTG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVLTLSL*CYSPML
Trigger: CAACATGGGAGAGTAACATCACAGAGAAAGAGTCAG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACTGACTCTTTCTCTGTaGTGTTACTCTCCCATGTTG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRLTLSL*CYSPML
Trigger: CAACATGGGAGAGTAACATCACAGAGAAAGAGTCAG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCCATCTGCAGGGTCTaGCTCTTTCTCTGTGATGTT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSICRV*LFLCDV
Trigger: AACATCACAGAGAAAGAGTCAGACCCTGCAGATGGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACTGAAGGAGGCTTTGTaGTTCTGTCCGTGGACTGTC +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVILKEAL*FCPWTV
Trigger: GACAGTCCACGGACAGAATCACAAAGCCTCCTTCAG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCATGTGGGTAGTGCTGTaGATTGGAAACCGCAGATAC +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPMWVVL*IGNRRY
Trigger: GTATCTGCGGTTTCCAATTCACAGCACTACCCACAT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGAGCTTTCTGTTGCACTaGTATCCCCACCTGATATGT +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQESFLLH*YPHLIC
Trigger: ACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCATGCTTGTAGGTGTGTaGTGTGTTGCTGTGTACAAC +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPMLVGV*CVAVYN
Trigger: GTTGTACACAGCAACACAGCACACACCTACAAGCAT...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGTGAATCATCCCATCTaGAATCATGTGTCTCACCTC +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRVNHPI*NHVSHL
Trigger: GAGGTGAGACACATGATTGCAGATGGGATGATTCAC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCAGCTCTTTCCGCCGTaGTTTTCTACGTCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLQLFPP*FSTSGL
Trigger: GAGACCAGACGTAGAAAAGCACGGCGGAAAGAGCTG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGGAACTTCTTGTGGTTaGGGGTCAGGATTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSGTSCG*GSGFSS
Trigger: AGAAGAGAATCCTGACCCGCAACCACAAGAAGTTCC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGAGCTTGCGACAGTTCTaGCTGTTGTGCAATGGCCTG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLSLRQF*LLCNGL
Trigger: CAGGCCATTGCACAACAGGCAGAACTGTCGCAAGCT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTTTGGGGTATTTAGATaGAGCACGGTTGACATGGGA +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPFGVFR*STVDMG
Trigger: TCCCATGTCAACCGTGCTGCATCTAAATACCCCAAA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCCTTCTTCCAAGGCTTaGTTTATCCAGCGCTTCTTA +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPPSSKA*FIQRFL
Trigger: TAAGAAGCGCTGGATAAAGCAAGCCTTGGAAGAAGG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACCTTCTTCCAAGGCTTaGTTTATCCAGCGCTTCTTA +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRPSSKA*FIQRFL
Trigger: TAAGAAGCGCTGGATAAAGCAAGCCTTGGAAGAAGG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCCTTCTTCCAAGGCTTaGTTTATCCAGCGCTTCTTA +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVPSSKA*FIQRFL
Trigger: TAAGAAGCGCTGGATAAAGCAAGCCTTGGAAGAAGG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCAGCCATGTTCATATCTaGTGGAAAAGCCTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPSHVHI*WKSLQQ
Trigger: CTGCTGAAGGCTTTTCCAGCAGATATGAACATGGCT...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACAGCTCCTGAAGACTTaGTTTTGCTCTGTGAAGAGT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRQLLKT*FCSVKS
Trigger: ACTCTTCACAGAGCAAAAGCAAGTCTTCAGGAGCTG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAGAGTTACTGCTGCCTTaGCCAGCTCCTGAAGACTTG +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIELLLP*PAPEDL
Trigger: CAAGTCTTCAGGAGCTGGGCAAGGCAGCAGTAACTC...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTCCTTGGAAGATTGCTaGCAGTGCTGTTTCCAGAAT +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQESLEDC*QCCFQN
Trigger: ATTCTGGAAACAGCACTGGCAGCAATCTTCCAAGGA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTCCTTGGAAGATTGCTaGCAGTGCTGTTTCCAGAAT +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVSLEDC*QCCFQN
Trigger: ATTCTGGAAACAGCACTGGCAGCAATCTTCCAAGGA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATCCTTGGAAGATTGCTaGCAGTGCTGTTTCCAGAAT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRSLEDC*QCCFQN
Trigger: ATTCTGGAAACAGCACTGGCAGCAATCTTCCAAGGA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTCCCATAATTATGAGTaGAATACACGCTCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDSHNYE*NTRSSH
Trigger: ATGAGAAGAGCGTGTATTCCACTCATAATTATGGGA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCTGTGTACAACACAGTaGAAGGAGAAAGCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPLCTTQ*KEKAPH
Trigger: ATGAGGAGCTTTCTCCTTCCACTGTGTTGTACACAG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTGCACGACCCTTTTCTaGACTCTTTTTCCGCTTCTT +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVCTTLF*TLFPLL
Trigger: AAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTTTCCCAGCCCTCAGTaGTATTTTCATCTAAATTCT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDFPSPQ*YFHLNS
Trigger: AGAATTTAGATGAAAATACCACTGAGGGCTGGGAAA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCTAGAAGGCTTAGCTaGAGGTGGTTTAGGGATTGG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSRRLS*RWFRDW
Trigger: CCAATCCCTAAACCACCTCCAGCTAAGCCTTCTAGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCTAGTCTCATTACTTTaGTATAGGTGCTGTGTTCTA +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDLVSLL*YRCCVL
Trigger: TAGAACACAGCACCTATACCAAAGTAATGAGACTAG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCTGTCCTAAACGCCTaGTCTGAGTTTCTCAGCAAG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSVLNA*SEFLSK
Trigger: CTTGCTGAGAAACTCAGACCAGGCGTTTAGGACAGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCATGTTCATATCTGCTaGAAAAGCCTTCAGCAGGGG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPHVHIC*KSLQQG
Trigger: CCCCTGCTGAAGGCTTTTCCAGCAGATATGAACATG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCGCTGGTAGCTATATCTaGAAGGGCTGTAAACAGTTG +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPAGSYI*KGCKQL
Trigger: CAACTGTTTACAGCCCTTCCAGATATAGCTACCAGC...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGCTGGTAGCTATATCTaGAAGGGCTGTAAACAGTTG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRAGSYI*KGCKQL
Trigger: CAACTGTTTACAGCCCTTCCAGATATAGCTACCAGC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACTGTATCCTGGAGATTaGGTGGGATGTCCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSLYPGD*VGCPLK
Trigger: CTTTAGAGGACATCCCACCCAATCTCCAGGATACAG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCTGTATCCTGGAGATTaGGTGGGATGTCCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPLYPGD*VGCPLK
Trigger: CTTTAGAGGACATCCCACCCAATCTCCAGGATACAG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCGATAACTGTATCCTaGAGATTGGGTGGGATGTCC +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSITVS*RLGGMS
Trigger: GGACATCCCACCCAATCTCCAGGATACAGTTATCGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTGGAGTCCCCGTAAATaGGGCCAACGAGTCTGTAGA +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLWSPRK*GQRVCR
Trigger: TCTACAGACTCGTTGGCCCCATTTACGGGGACTCCA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCATTCAAAAGCATGCATaGTGGCTTCAACCTTTCGGT +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPIQKHA*WLQPFG
Trigger: ACCGAAAGGTTGAAGCCATCATGCATGCTTTTGAAT...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAATGGGATCCAGTAACTaGTATCACAGTTGGGTCAGA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSMGSSN*YHSWVR
Trigger: TCTGACCCAACTGTGATATCAGTTACTGGATCCCAT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGGCACAGATGAAGTCTaGGTCATCCCTTCTTCCAAG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLGTDEV*VIPSSK
Trigger: CTTGGAAGAAGGGATGACTCAGACTTCATCTGTGCC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAGGCACAGATGAAGTCTaGGTCATCCCTTCTTCCAAG +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIGTDEV*VIPSSK
Trigger: CTTGGAAGAAGGGATGACTCAGACTTCATCTGTGCC...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCTGACTCTTTCTCTGTaGTGTTACTCTCCCATGTTG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPLTLSL*CYSPML
Trigger: CAACATGGGAGAGTAACATCACAGAGAAAGAGTCAG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACTTCGTCTTTGGTGCTaGACGACCCTTTTCTGGACT +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVILRLWC*TTLFWT
Trigger: AGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTTCGTCTTTGGTGCTaGACGACCCTTTTCTGGACT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLLRLWC*TTLFWT
Trigger: AGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGTGAATCATCCCATCTaGAATCATGTGTCTCACCTC +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPVNHPI*NHVSHL
Trigger: GAGGTGAGACACATGATTGCAGATGGGATGATTCAC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTGAATCATCCCATCTaGAATCATGTGTCTCACCTC +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSVNHPI*NHVSHL
Trigger: GAGGTGAGACACATGATTGCAGATGGGATGATTCAC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATCTACGTCTGGTCTCTaGTCCAATGGTGGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVISTSGL*SNGGKA
Trigger: AGCTTTCCCACCATTGGAGCAGAGACCAGACGTAGA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAAAGATTCAAAAGCATaGATGATGGCTTCAACCTTT +
Preference number: 4 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDKDSKA*MMASTF
Trigger: AAAGGTTGAAGCCATCATGCATGCTTTTGAATCTTT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATTTGGGGTATTTAGATaGAGCACGGTTGACATGGGA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSFGVFR*STVDMG
Trigger: TCCCATGTCAACCGTGCTGCATCTAAATACCCCAAA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAAGCCATGTTCATATCTaGTGGAAAAGCCTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSHVHI*WKSLQQ
Trigger: CTGCTGAAGGCTTTTCCAGCAGATATGAACATGGCT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACAGCTCCTGAAGACTTaGTTTTGCTCTGTGAAGAGT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSQLLKT*FCSVKS
Trigger: ACTCTTCACAGAGCAAAAGCAAGTCTTCAGGAGCTG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGTTTCCAGGTCTCAGTaGAGTAGTTCGATAACTGTA +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRVSRSQ*SSSITV
Trigger: TACAGTTATCGAACTACTGCACTGAGACCTGGAAAC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATCCTCCTTGGAAGATTaGTGCCAGTGCTGTTTCCAG +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVISSLED*CQCCFQ
Trigger: CTGGAAACAGCACTGGCAGCAATCTTCCAAGGAGGA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCTTCTCATTAACTGCTaGACTAGCCTCCACAGATTC +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPLLINC*TSLHRF
Trigger: GAATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGTGCTTTTCTACGTCTaGTCTCTGCTCCAATGGTGG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLVLFYV*SLLQWW
Trigger: CCACCATTGGAGCAGAGACCAGACGTAGAAAAGCAC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAAGGTGGTTTAGGGATTaGCTTTTCTGCAGCTACATC +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSRWFRD*LFCSYI
Trigger: GATGTAGCTGCAGAAAAGCCAATCCCTAAACCACCT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTGGCGTTTTAGTCTTTaGGCTGAACTGGTCCGGTAC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLWRFSL*AELVRY
Trigger: GTACCGGACCAGTTCAGCCCAAAGACTAAAACGCCA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGCAATGGCCTGCTTCTaGCGTTTTAGTCTTTGGGCT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLAMACF*RFSLWA
Trigger: AGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGCCTGTTGTGCAATaGCCTGCTTCTGGCGTTTTA +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLLPVVQ*PASGVL
Trigger: TAAAACGCCAGAAGCAGGCCATTGCACAACAGGCAG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGAGAACAGCTCCTCCTTaGAAGATTGCTGCCAGTGCT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLRTAPP*KIAASA
Trigger: AGCACTGGCAGCAATCTTCCAAGGAGGAGCTGTTCT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTCAGAGTTCCTGTGCTaGACTGAGAAACCGAGTCTG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLSEFLC*TEKPSL
Trigger: CAGACTCGGTTTCTCAGTCCAGCACAGGAACTCTGA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTCCAGCAGCCATATCTaGGTAGGAAGTATCTGGTGT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLSSSHI*VGSIWC
Trigger: ACACCAGATACTTCCTACTCAGATATGGCTGCTGGA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATCCAGCAGCCATATCTaGGTAGGAAGTATCTGGTGT +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVISSSHI*VGSIWC
Trigger: ACACCAGATACTTCCTACTCAGATATGGCTGCTGGA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACCGAGGGAGAATTCTTaGTCTTCTTCGTCTTTGGTG +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIPRENS*SSSSLV
Trigger: CACCAAAGACGAAGAAGATCAAGAATTCTCCCTCGG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAACATCTGCACTGTACTaGTTAGTGAAAGCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRTSALY*LVKASS
Trigger: TGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGACATCTGCACTGTACTaGTTAGTGAAAGCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQETSALY*LVKASS
Trigger: TGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAGCTTTTGAACACGAGTaGCTCTTCCCAGCTGTAACT +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIAFEHE*LFPAVT
Trigger: AGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGC...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGCTTTTGAACACGAGTaGCTCTTCCCAGCTGTAACT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLAFEHE*LFPAVT
Trigger: AGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGATTTTCCGGTGCTTTTaGACACGAGTGACTCTTCCC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLIFRCF*TRVTLP
Trigger: GGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAAT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCATTCAAAAGCATGCATaGTGGCTTCAACCTTTCGGT +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPIQKHA*WLQPFG
Trigger: ACCGAAAGGTTGAAGCCATCATGCATGCTTTTGAAT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGTCTGTTCTCTCCTaGACTGTCTGTATTTCCAGC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLLSVLS*TVCISS
Trigger: GCTGGAAATACAGACAGTTCAGGAGAGAACAGACAG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAATGTGGGTAGTGCTGTaGATTGGAAACCGCAGATAC +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIMWVVL*IGNRRY
Trigger: GTATCTGCGGTTTCCAATTCACAGCACTACCCACAT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGATGTGGGTAGTGCTGTaGATTGGAAACCGCAGATAC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLMWVVL*IGNRRY
Trigger: GTATCTGCGGTTTCCAATTCACAGCACTACCCACAT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAGCTCTTCTCATTAACTaGTGGACTAGCCTCCACAGA +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIALLIN*WTSLHR
Trigger: TCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAGAGC...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGGGCATTCTGTACATCTaGACTGTACTGATTAGTGAA +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEGILYI*TVLISE
Trigger: TTCACTAATCAGTACAGTGCAGATGTACAGAATGCC...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGGCATTCTGTACATCTaGACTGTACTGATTAGTGAA +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRGILYI*TVLISE
Trigger: TTCACTAATCAGTACAGTGCAGATGTACAGAATGCC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTTAGAATGGAGATGTTaGTCAAGGGCATTCTGTACA +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPLEWRC*SRAFCT
Trigger: TGTACAGAATGCCCTTGAGCAACATCTCCATTCTAA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATTAGAATGGAGATGTTaGTCAAGGGCATTCTGTACA +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRLEWRC*SRAFCT
Trigger: TGTACAGAATGCCCTTGAGCAACATCTCCATTCTAA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTTAGAATGGAGATGTTaGTCAAGGGCATTCTGTACA +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVLEWRC*SRAFCT
Trigger: TGTACAGAATGCCCTTGAGCAACATCTCCATTCTAA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGGAACTTCTTGTGGTTaGGGGTCAGGATTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLGTSCG*GSGFSS
Trigger: AGAAGAGAATCCTGACCCGCAACCACAAGAAGTTCC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCAACAGGGCATTCTTaGTTCTCTGCCTTGTCATTT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSTGHS*FSALSF
Trigger: AAATGACAAGGCAGAGAAGCAAGAATGCCCTGTTGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTTACTTTGGTATAGGTaGTGTGTTCTAGTCTCTTGG +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQELLWYR*CVLVSW
Trigger: CCAAGAGACTAGAACACAGCACCTATACCAAAGTAA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTTACTTTGGTATAGGTaGTGTGTTCTAGTCTCTTGG +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPLLWYR*CVLVSW
Trigger: CCAAGAGACTAGAACACAGCACCTATACCAAAGTAA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCTCTATACAGTCCATCTaGTCGAGGCATAGCATTCAA +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPSIQSI*SRHSIQ
Trigger: TTGAATGCTATGCCTCGAGCAGATGGACTGTATAGA...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACTGAAGACTTGCTTTTaGTCTGTGAAGAGTCATTTC +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRLKTCF*SVKSHF
Trigger: GAAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTCCAGGTCTCAGTaGAGTAGTTCGATAACTGTA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSVSRSQ*SSSITV
Trigger: TACAGTTATCGAACTACTGCACTGAGACCTGGAAAC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGATCTTCTTCGTCTTTaGTGCTGCACGACCCTTTTC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLDLLRL*CCTTLF
Trigger: GAAAAGGGTCGTGCAGCACCAAAGACGAAGAAGATC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGAATTCCTTGTTAGAATaGAGATGTTGCTCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQENSLLE*RCCSRA
Trigger: TGCCCTTGAGCAACATCTCCATTCTAACAAGGAATT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTTCTGGAACTTCTTGTaGTTGCGGGTCAGGATTCTC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLFWNFL*LRVRIL
Trigger: GAGAATCCTGACCCGCAACCACAAGAAGTTCCAGAA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGAGGCTTAGCTGGAGGTaGTTTAGGGATTGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLRLSWR*FRDWLF
Trigger: GAAAAGCCAATCCCTAAACCACCTCCAGCTAAGCCT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGCAGCACGGTTGACATaGGATCCAGTAACTGATATC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLAARLT*DPVTDI
Trigger: GATATCAGTTACTGGATCCCATGTCAACCGTGCTGC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTGTAGTGTTTGGGGGTaGTACAAATTAATGGGGAAT +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPCSVWG*YKLMGN
Trigger: ATTCCCCATTAATTTGTACCACCCCCAAACACTACA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATGTAGTGTTTGGGGGTaGTACAAATTAATGGGGAAT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRCSVWG*YKLMGN
Trigger: ATTCCCCATTAATTTGTACCACCCCCAAACACTACA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAAGCGAATGTAGTGTTTaGGGGTGGTACAAATTAATG +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRSECSV*GWYKLM
Trigger: CATTAATTTGTACCACCCCCAAACACTACATTCGCT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCAGCGAATGTAGTGTTTaGGGGTGGTACAAATTAATG +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVSECSV*GWYKLM
Trigger: CATTAATTTGTACCACCCCCAAACACTACATTCGCT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACATGTTCATATCTGCTaGAAAAGCCTTCAGCAGGGG +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIHVHIC*KSLQQG
Trigger: CCCCTGCTGAAGGCTTTTCCAGCAGATATGAACATG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTCGATAACTGTATCCTaGAGATTGGGTGGGATGTCC +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLSITVS*RLGGMS
Trigger: GGACATCCCACCCAATCTCCAGGATACAGTTATCGA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAACATCTGCACTGTACTaGTTAGTGAAAGCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSTSALY*LVKASS
Trigger: TGAAGAAGCTTTCACTAATCAGTACAGTGCAGATGT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCATTGTTGTCGTAACATaGCTTTCCCACGATATTCTA +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPIVVVT*LSHDIL
Trigger: TAGAATATCGTGGGAAAGTCATGTTACGACAACAAT...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGATTGTTGTCGTAACATaGCTTTCCCACGATATTCTA +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEIVVVT*LSHDIL
Trigger: TAGAATATCGTGGGAAAGTCATGTTACGACAACAAT...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCACATCTCTACACCATTaGATTTTGAGTAGAAGAGCA +
Preference number: 4 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVTSLHH*ILSRRA
Trigger: TGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCCAACTACTATCTCTaGACTGCTAGTAGTAATCTC +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSNYYL*TASSNL
Trigger: GAGATTACTACTAGCAGTTCAGAGATAGTAGTTGGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATTCAGGAGGAGTTACTaGGTTGTTACTTCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIFRRSY*VVTSSF
Trigger: GAAGGAGGAAGTAACAACTCAGTAACTCCTCCTGAA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGATGGGATCCAGTAACTaGTATCACAGTTGGGTCAGA +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLMGSSN*YHSWVR
Trigger: TCTGACCCAACTGTGATATCAGTTACTGGATCCCAT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGCTGAAGCAACTTGGTaGTATTCTGCTCCATCAGAT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLAEATW*YSAPSD
Trigger: ATCTGATGGAGCAGAATATCACCAAGTTGCTTCAGC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTTCCCAGCTGTAACTaGATTTGGGAACCGATTACT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLLPSCN*IWEPIT
Trigger: AGTAATCGGTTCCCAAATGCAGTTACAGCTGGGAAG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTGCAATGGTGACTTCTaGATCCTTGGTGATAGCAGA +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLCNGDF*ILGDSR
Trigger: TCTGCTATCACCAAGGATGCAGAAGTCACCATTGCA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATGCAATGGTGACTTCTaGATCCTTGGTGATAGCAGA +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVICNGDF*ILGDSR
Trigger: TCTGCTATCACCAAGGATGCAGAAGTCACCATTGCA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATTGTCAACTTCCTCATaGTCATTGGATACAGTTACT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRLSTSS*SLDTVT
Trigger: AGTAACTGTATCCAATGAGCATGAGGAAGTTGACAA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTTGTCAACTTCCTCATaGTCATTGGATACAGTTACT +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPLSTSS*SLDTVT
Trigger: AGTAACTGTATCCAATGAGCATGAGGAAGTTGACAA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGAGCCATGTTCATATCTaGTGGAAAAGCCTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLSHVHI*WKSLQQ
Trigger: CTGCTGAAGGCTTTTCCAGCAGATATGAACATGGCT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACTTCTCATTAACTGCTaGACTAGCCTCCACAGATTC +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVILLINC*TSLHRF
Trigger: GAATCTGTGGAGGCTAGTCCAGCAGTTAATGAGAAG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGTGTACAACACAGTaGAAGGAGAAAGCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLLCTTQ*KEKAPH
Trigger: ATGAGGAGCTTTCTCCTTCCACTGTGTTGTACACAG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTGCACGACCCTTTTCTaGACTCTTTTTCCGCTTCTT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLCTTLF*TLFPLL
Trigger: AAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTTTCCCAGCCCTCAGTaGTATTTTCATCTAAATTCT +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEFPSPQ*YFHLNS
Trigger: AGAATTTAGATGAAAATACCACTGAGGGCTGGGAAA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATTTCCCAGCCCTCAGTaGTATTTTCATCTAAATTCT +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRFPSPQ*YFHLNS
Trigger: AGAATTTAGATGAAAATACCACTGAGGGCTGGGAAA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCTACAGTTACTTTTTCTaGAACTTCTTGTGGTTGCGG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPYSYFF*NFLWLR
Trigger: CCGCAACCACAAGAAGTTCCAGAAAAAGTAACTGTA...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAAGGTGGTTTAGGGATTaGCTTTTCTGCAGCTACATC +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIRWFRD*LFCSYI
Trigger: GATGTAGCTGCAGAAAAGCCAATCCCTAAACCACCT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATGTAGTGTTTGGGGGTaGTACAAATTAATGGGGAAT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSCSVWG*YKLMGN
Trigger: ATTCCCCATTAATTTGTACCACCCCCAAACACTACA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCAGCGAATGTAGTGTTTaGGGGTGGTACAAATTAATG +
Preference number: 4 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPSECSV*GWYKLM
Trigger: CATTAATTTGTACCACCCCCAAACACTACATTCGCT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACTAGTCTCATTACTTTaGTATAGGTGCTGTGTTCTA +
Preference number: 4 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRLVSLL*YRCCVL
Trigger: TAGAACACAGCACCTATACCAAAGTAATGAGACTAG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGCTAGTCTCATTACTTTaGTATAGGTGCTGTGTTCTA +
Preference number: 4 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQELVSLL*YRCCVL
Trigger: TAGAACACAGCACCTATACCAAAGTAATGAGACTAG...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAGCTGGTAGCTATATCTaGAAGGGCTGTAAACAGTTG +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIAGSYI*KGCKQL
Trigger: CAACTGTTTACAGCCCTTCCAGATATAGCTACCAGC...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR CAA 72 bp ACAATTAGAGGTAAGGAGGGAGACTCACAGTATATCTaGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGG +
Preference number: 4 (lower is better)
Translates to: TIRGKEGDSQYI*SKRSTVHCSTR
Trigger: CCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGATATACTGTGAGTCTCCCTCCTTACCTCTAATTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAATTGTTGTCGTAACATaGCTTTCCCACGATATTCTA +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSIVVVT*LSHDIL
Trigger: TAGAATATCGTGGGAAAGTCATGTTACGACAACAAT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAATTCAAAAGCATGCATaGTGGCTTCAACCTTTCGGT +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIIQKHA*WLQPFG
Trigger: ACCGAAAGGTTGAAGCCATCATGCATGCTTTTGAAT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCAAAGATTCAAAAGCATaGATGATGGCTTCAACCTTT +
Preference number: 4 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPKDSKA*MMASTF
Trigger: AAAGGTTGAAGCCATCATGCATGCTTTTGAATCTTT...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTCAACAGGGCATTCTTaGTTCTCTGCCTTGTCATTT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLSTGHS*FSALSF
Trigger: AAATGACAAGGCAGAGAAGCAAGAATGCCCTGTTGA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTCTATACAGTCCATCTaGTCGAGGCATAGCATTCAA +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLSIQSI*SRHSIQ
Trigger: TTGAATGCTATGCCTCGAGCAGATGGACTGTATAGA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGTTTCCAGGTCTCAGTaGAGTAGTTCGATAACTGTA +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLVSRSQ*SSSITV
Trigger: TACAGTTATCGAACTACTGCACTGAGACCTGGAAAC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATCCCATAATTATGAGTaGAATACACGCTCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSSHNYE*NTRSSH
Trigger: ATGAGAAGAGCGTGTATTCCACTCATAATTATGGGA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAGGCATTCTGTACATCTaGACTGTACTGATTAGTGAA +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIGILYI*TVLISE
Trigger: TTCACTAATCAGTACAGTGCAGATGTACAGAATGCC...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAAATTCCTTGTTAGAATaGAGATGTTGCTCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVINSLLE*RCCSRA
Trigger: TGCCCTTGAGCAACATCTCCATTCTAACAAGGAATT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTACAGTTACTTTTTCTaGAACTTCTTGTGGTTGCGG +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLYSYFF*NFLWLR
Trigger: CCGCAACCACAAGAAGTTCCAGAAAAAGTAACTGTA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATACAGTTACTTTTTCTaGAACTTCTTGTGGTTGCGG +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIYSYFF*NFLWLR
Trigger: CCGCAACCACAAGAAGTTCCAGAAAAAGTAACTGTA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
3UTR CAA 72 bp GGCAAGGATGGGAGACATAGGCTTCAACACAAGTCATaGCACTTAGAACCGTTACTAACCGAAACACCATTT +
Preference number: 4 (lower is better)
Translates to: GKDGRHRLQHKS*HLEPLLTETPF
Trigger: AAATGGTGTTTCGGTTAGTAACGGTTCTAAGTGCAATGACTTGTGTTGAAGCCTATGTCTCCCATCCTTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGACATCTCTACACCATTaGATTTTGAGTAGAAGAGCA +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLTSLHH*ILSRRA
Trigger: TGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR TCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAACATCTCTACACCATTaGATTTTGAGTAGAAGAGCA +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVITSLHH*ILSRRA
Trigger: TGCTCTTCTACTCAAAATTCAATGGTGTAGAGATGT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATTGTCAACTTCCTCATaGTCATTGGATACAGTTACT +
Preference number: 4 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVILSTSS*SLDTVT
Trigger: AGTAACTGTATCCAATGAGCATGAGGAAGTTGACAA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR GCA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGAAAGATTCAAAAGCATaGATGATGGCTTCAACCTTT +
Preference number: 4 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLKDSKA*MMASTF
Trigger: AAAGGTTGAAGCCATCATGCATGCTTTTGAATCTTT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCATCTCCACTCCTGCTaGGGAAGCCAGCCTCGGAGG +
Preference number: 5 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDHLHSC*GSQPRR
Trigger: CCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 90 bp ATCCATTTCGACACTCCTCTTCTCCTGGGTGAGTCTGGCCAGGTGTaGTCAGCTGGGGACTCTTTGAGCCTGAGCTGGGTGGGGGTGGTG +
Preference number: 5 (lower is better)
Translates to: IHFDTPLLLGESGQV*SAGDSLSLSWVGVV
Trigger: CACCACCCCCACCCAGCTCAGGCTCAAAGAGTCCCCAGCTGACCACACCTGGCCAGACTCACCCAGGAGAAGAGGAGTGTCGAAATGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 90 bp CCTGGTCTGAGTTTCTCAGCAAGGTCTGAGGACCATCTCCACTCCTaGTTGGGAAGCCAGCCTCGGAGGTGGGAACAACAGAGGGATGAG +
Preference number: 5 (lower is better)
Translates to: PGLSFSARSEDHLHS*LGSQPRRWEQQRDE
Trigger: CTCATCCCTCTGTTGTTCCCACCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAACTCAGACCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 90 bp GCTGCCAGTGCTGTTTCCAGAATGCGGCTGGCTGCTGTAATACCCTaGAGTCCCCGTAAATGGGGCCAACGAGTCTGTAGACACAGGGTG +
Preference number: 5 (lower is better)
Translates to: AASAVSRMRLAAVIP*SPRKWGQRVCRHRV
Trigger: CACCCTGTGTCTACAGACTCGTTGGCCCCATTTACGGGGACTCCAGGGTATTACAGCAGCCAGCCGCATTCTGGAAACAGCACTGGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCATCCCAGCTTTCTGTaGCACTGCTATCCCCACCTG +
Preference number: 5 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDHPSFL*HCYPHL
Trigger: CAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCATCTCCACTCCTGCTaGGGAAGCCAGCCTCGGAGG +
Preference number: 5 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVHLHSC*GSQPRR
Trigger: CCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 90 bp CTCCAGCTCCAGCTCTTTCCGCCGTGCTTTTCTACGTCTGGTCTCTaGTCCAATGGTGGGAAAGCTAGGAGGAGGTGGGAGTGGCAATTC +
Preference number: 5 (lower is better)
Translates to: LQLQLFPPCFSTSGL*SNGGKARRRWEWQF
Trigger: GAATTGCCACTCCCACCTCCTCCTAGCTTTCCCACCATTGGAGCAGAGACCAGACGTAGAAAAGCACGGCGGAAAGAGCTGGAGCTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACATCTCCACTCCTGCTaGGGAAGCCAGCCTCGGAGG +
Preference number: 5 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSHLHSC*GSQPRR
Trigger: CCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATAAGAACAGCTCCTCCTaGGAAGATTGCTGCCAGTGC +
Preference number: 5 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDKNSSS*EDCCQC
Trigger: GCACTGGCAGCAATCTTCCAAGGAGGAGCTGTTCTT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp GAGAACATGAGGCTGTATCCATTTCGACACTCCTCTTCTCCTGGGTaGGTCTGGCCAGGTGTGGTCAGCTGGGGACTCTTTGAGCCTGAG +
Preference number: 5 (lower is better)
Translates to: ENMRLYPFRHSSSPG*VWPGVVSWGLFEPE
Trigger: CTCAGGCTCAAAGAGTCCCCAGCTGACCACACCTGGCCAGACTCACCCAGGAGAAGAGGAGTGTCGAAATGGATACAGCCTCATGTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp TTGAACTCTGTCCTAAACGCCTGGTCTGAGTTTCTCAGCAAGGTCTaGGGACCATCTCCACTCCTGCTTGGGAAGCCAGCCTCGGAGGTG +
Preference number: 5 (lower is better)
Translates to: LNSVLNAWSEFLSKV*GPSPLLLGKPASEV
Trigger: CACCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAACTCAGACCAGGCGTTTAGGACAGAGTTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp CCTGGAGATTGGGTGGGATGTCCTCTAAAGGGGGACGAACTCTGCTaGAGGAGGCTTTGTGATTCTGTCCGTGGACTGTCACACTGCAGG +
Preference number: 5 (lower is better)
Translates to: PGDWVGCPLKGDELC*RRLCDSVRGLSHCR
Trigger: CCTGCAGTGTGACAGTCCACGGACAGAATCACAAAGCCTCCTTCAGCAGAGTTCGTCCCCCTTTAGAGGACATCCCACCCAATCTCCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATGTGACTTCTGCATCCTaGGTGATAGCAGATACGGCA +
Preference number: 5 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDVTSAS*VIADTA
Trigger: TGCCGTATCTGCTATCACCAAGGATGCAGAAGTCAC...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGCTGACTGCCCAGCATaGGGCAGACTGATAGTCCGT +
Preference number: 5 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRADCPA*GRLIVR
Trigger: ACGGACTATCAGTCTGCCCAATGCTGGGCAGTCAGC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp GTTTTCTTGAGGTCTGCAGTGAGAGGAAGAAGTGCCCCTGGAATCTaGCGGGCTTACCGCCTCCAAATGCGATGCAGAGGAATGAGACGG +
Preference number: 5 (lower is better)
Translates to: VFLRSAVRGRSAPGI*RAYRLQMRCRGMRR
Trigger: CCGTCTCATTCCTCTGCATCGCATTTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCACTTCTTCCTCTCACTGCAGACCTCAAGAAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 90 bp TCTTCCAAGGCAGCTTGCGACAGTTCTGCCTGTTGTGCAATGGCCTaGTTCTGGCGTTTTAGTCTTTGGGCTGAACTGGTCCGGTACCGA +
Preference number: 5 (lower is better)
Translates to: SSKAACDSSACCAMA*FWRFSLWAELVRYR
Trigger: TCGGTACCGGACCAGTTCAGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGCACAACAGGCAGAACTGTCGCAAGCTGCCTTGGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 90 bp CTCCTTCTTCCAAGGCAGCTTGCGACAGTTCTGCCTGTTGTGCAATaGCCTGCTTCTGGCGTTTTAGTCTTTGGGCTGAACTGGTCCGGT +
Preference number: 5 (lower is better)
Translates to: LLLPRQLATVLPVVQ*PASGVLVFGLNWSG
Trigger: ACCGGACCAGTTCAGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGCACAACAGGCAGAACTGTCGCAAGCTGCCTTGGAAGAAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTTAGATGCAGCACGGTaGACATGGGATCCAGTAACT +
Preference number: 5 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDLDAAR*TWDPVT
Trigger: AGTTACTGGATCCCATGTCAACCGTGCTGCATCTAA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATACTGTATCCTGGAGATaGGGTGGGATGTCCTCTAAA +
Preference number: 5 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDTVSWR*GGMSSK
Trigger: TTTAGAGGACATCCCACCCAATCTCCAGGATACAGT...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGCTGACTGCCCAGCATaGGGCAGACTGATAGTCCGT +
Preference number: 5 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPADCPA*GRLIVR
Trigger: ACGGACTATCAGTCTGCCCAATGCTGGGCAGTCAGC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp GGGATGTCCTCTAAAGGGGGACGAACTCTGCTGAAGGAGGCTTTGTaGTTCTGTCCGTGGACTGTCACACTGCAGGAGCTGGTAGCTATA +
Preference number: 5 (lower is better)
Translates to: GMSSKGGRTLLKEAL*FCPWTVTLQELVAI
Trigger: TATAGCTACCAGCTCCTGCAGTGTGACAGTCCACGGACAGAATCACAAAGCCTCCTTCAGCAGAGTTCGTCCCCCTTTAGAGGACATCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 90 bp TTCTGGAACCTCATTTTGCTGCTCCAGCTCCAGCTCTTTCCGCCGTaGTTTTCTACGTCTGGTCTCTGCTCCAATGGTGGGAAAGCTAGG +
Preference number: 5 (lower is better)
Translates to: FWNLILLLQLQLFPP*FSTSGLCSNGGKAR
Trigger: CCTAGCTTTCCCACCATTGGAGCAGAGACCAGACGTAGAAAAGCACGGCGGAAAGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACATCCCAGCTTTCTGTaGCACTGCTATCCCCACCTG +
Preference number: 5 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSHPSFL*HCYPHL
Trigger: CAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTTCTGGAACCTCATTTaGCTGCTCCAGCTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEFWNLI*LLQLQL
Trigger: GAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTTTTTCTGGAACTTCTaGTGGTTGCGGGTCAGGATT +
Preference number: 5 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDFFWNF*WLRVRI
Trigger: AATCCTGACCCGCAACCACAAGAAGTTCCAGAAAAA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCAAGAACAGCTCCTCCTaGGAAGATTGCTGCCAGTGC +
Preference number: 5 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVKNSSS*EDCCQC
Trigger: GCACTGGCAGCAATCTTCCAAGGAGGAGCTGTTCTT...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp TTGCGGTACTCTAGCAAGGATACCTTTTTCCTTTGCGGTGGGTTCTaGGGAGCAGATGGGACTCCTTCACAGGTCCTTTCACCACCAGGT +
Preference number: 5 (lower is better)
Translates to: LRYSSKDTFFLCGGF*GADGTPSQVLSPPG
Trigger: ACCTGGTGGTGAAAGGACCTGTGAAGGAGTCCCATCTGCTCCTCAGAACCCACCGCAAAGGAAAAAGGTATCCTTGCTAGAGTACCGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 90 bp ACTTCTTGTGGTTGCGGGTCAGGATTCTCTTCTGGAACCTCATTTTaGTGCTCCAGCTCCAGCTCTTTCCGCCGTGCTTTTCTACGTCTG +
Preference number: 5 (lower is better)
Translates to: TSCGCGSGFSSGTSF*CSSSSSFRRAFLRL
Trigger: CAGACGTAGAAAAGCACGGCGGAAAGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAAGAGAATCCTGACCCGCAACCACAAGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 90 bp AAGGCAGCTTGCGACAGTTCTGCCTGTTGTGCAATGGCCTGCTTCTaGCGTTTTAGTCTTTGGGCTGAACTGGTCCGGTACCGAGAAATT +
Preference number: 5 (lower is better)
Translates to: KAACDSSACCAMACF*RFSLWAELVRYREI
Trigger: AATTTCTCGGTACCGGACCAGTTCAGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGCACAACAGGCAGAACTGTCGCAAGCTGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCCAAAGCCAAATCTCTaGCAGCCCTCAGGATTTTCC +
Preference number: 5 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVPKPNL*QPSGFS
Trigger: GGAAAATCCTGAGGGCTGCAAGAGATTTGGCTTTGG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGGTGACTTCTGCATCCTaGGTGATAGCAGATACGGCA +
Preference number: 5 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEVTSAS*VIADTA
Trigger: TGCCGTATCTGCTATCACCAAGGATGCAGAAGTCAC...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCATTCTGGAACCTCATTTaGCTGCTCCAGCTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSFWNLI*LLQLQL
Trigger: GAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAA...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTGGAACTTCTTGTGGTaGCGGGTCAGGATTCTCTTC +
Preference number: 5 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVWNFLW*RVRILF
Trigger: GAAGAGAATCCTGACCCGCAACCACAAGAAGTTCCA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATGGAACTTCTTGTGGTaGCGGGTCAGGATTCTCTTC +
Preference number: 5 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRWNFLW*RVRILF
Trigger: GAAGAGAATCCTGACCCGCAACCACAAGAAGTTCCA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTGGAACTTCTTGTGGTaGCGGGTCAGGATTCTCTTC +
Preference number: 5 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPWNFLW*RVRILF
Trigger: GAAGAGAATCCTGACCCGCAACCACAAGAAGTTCCA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAGTAGCATGTTCAGGGTaGTTGCCAACACAGTTGGGT +
Preference number: 5 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRVACSG*LPTQLG
Trigger: ACCCAACTGTGTTGGCAACAACCCTGAACATGCTAC...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCGTAGCATGTTCAGGGTaGTTGCCAACACAGTTGGGT +
Preference number: 5 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPVACSG*LPTQLG
Trigger: ACCCAACTGTGTTGGCAACAACCCTGAACATGCTAC...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCCTGAAGACTTGCTTTaGCTCTGTGAAGAGTCATTT +
Preference number: 5 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDPEDLL*LCEESF
Trigger: AAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAGG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAAAGAACAGCTCCTCCTaGGAAGATTGCTGCCAGTGC +
Preference number: 5 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSKNSSS*EDCCQC
Trigger: GCACTGGCAGCAATCTTCCAAGGAGGAGCTGTTCTT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAGCTGACTGCCCAGCATaGGGCAGACTGATAGTCCGT +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIADCPA*GRLIVR
Trigger: ACGGACTATCAGTCTGCCCAATGCTGGGCAGTCAGC...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp CTGCTCATTCCCCTGCACTTGTCACAGTTGAGAAGGAAGCCATCCTaGGAAAGACCACAAGGACACCAGGTAGGAACAGTCTCTCCTTCA +
Preference number: 5 (lower is better)
Translates to: LLIPLHLSQLRRKPS*ERPQGHQVGTVSPS
Trigger: TGAAGGAGAGACTGTTCCTACCTGGTGTCCTTGTGGTCTTTCTCAGGATGGCTTCCTTCTCAACTGTGACAAGTGCAGGGGAATGAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp CTGGTAGCATGTTCAGGGTTGTTGCCAACACAGTTGGGTCAGTGGTaGTACGCAAAGGACACTCAACAGGGCATTCTTGCTTCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: LVACSGLLPTQLGQW*YAKDTQQGILASLP
Trigger: AGGCAGAGAAGCAAGAATGCCCTGTTGAGTGTCCTTTGCGTATCACCACTGACCCAACTGTGTTGGCAACAACCCTGAACATGCTACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp CTGAGGAGCAGATGGGACTCCTTCACAGGTCCTTTCACCACCAGGTaGCATGGATCCCCGAGAGAGGTCTTTCATAAAGCCATGTTCATA +
Preference number: 5 (lower is better)
Translates to: LRSRWDSFTGPFTTR*HGSPREVFHKAMFI
Trigger: TATGAACATGGCTTTATGAAAGACCTCTCTCGGGGATCCATGTCACCTGGTGGTGAAAGGACCTGTGAAGGAGTCCCATCTGCTCCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 90 bp AGGCTTCCTGTCTCCCACCAAGGGAGACCCTCTATACAGTCCATCTaGTCGAGGCATAGCATTCAAAGGGGAGTAGGCGTACATCAAATT +
Preference number: 5 (lower is better)
Translates to: RLPVSHQGRPSIQSI*SRHSIQRGVGVHQI
Trigger: AATTTGATGTACGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATAGAGGGTCTCCCTTGGTGGGAGACAGGAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 90 bp TACTTTTTCTGGAACTTCTTGTGGTTGCGGGTCAGGATTCTCTTCTaGAACCTCATTTTGCTGCTCCAGCTCCAGCTCTTTCCGCCGTGC +
Preference number: 5 (lower is better)
Translates to: YFFWNFLWLRVRILF*NLILLLQLQLFPPC
Trigger: GCACGGCGGAAAGAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAAGAGAATCCTGACCCGCAACCACAAGAAGTTCCAGAAAAAGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACATCCCAGCTTTCTGTaGCACTGCTATCCCCACCTG +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIHPSFL*HCYPHL
Trigger: CAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCGATTTTCCGGTGCTTTaGAACACGAGTGACTCTTCC +
Preference number: 5 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPDFPVL*NTSDSS
Trigger: GGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAATC...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGATTTTCCGGTGCTTTaGAACACGAGTGACTCTTCC +
Preference number: 5 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVDFPVL*NTSDSS
Trigger: GGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAATC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCCAAAGCCAAATCTCTaGCAGCCCTCAGGATTTTCC +
Preference number: 5 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPPKPNL*QPSGFS
Trigger: GGAAAATCCTGAGGGCTGCAAGAGATTTGGCTTTGG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCCAGGGGCTGCAGTTTTaGTCTCTTCTCCAACTACTA +
Preference number: 5 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPQGLQF*SLLQLL
Trigger: TAGTAGTTGGAGAAGAGACAAAAACTGCAGCCCCTG...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGACAGGGGCTGCAGTTTTaGTCTCTTCTCCAACTACTA +
Preference number: 5 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRQGLQF*SLLQLL
Trigger: TAGTAGTTGGAGAAGAGACAAAAACTGCAGCCCCTG...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATTAGATGCAGCACGGTaGACATGGGATCCAGTAACT +
Preference number: 5 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRLDAAR*TWDPVT
Trigger: AGTTACTGGATCCCATGTCAACCGTGCTGCATCTAA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTTAGATGCAGCACGGTaGACATGGGATCCAGTAACT +
Preference number: 5 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQELDAAR*TWDPVT
Trigger: AGTTACTGGATCCCATGTCAACCGTGCTGCATCTAA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGCTCAACAGGGCATTCTaGCTTCTCTGCCTTGTCATT +
Preference number: 5 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQELNRAF*LLCLVI
Trigger: AATGACAAGGCAGAGAAGCAAGAATGCCCTGTTGAG...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACCCTTCTTCCAAGGCTaGCTTTATCCAGCGCTTCTT +
Preference number: 5 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSPFFQG*LYPALL
Trigger: AAGAAGCGCTGGATAAAGCAAGCCTTGGAAGAAGGG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCAACTGCAGAGGAGTGTaGGAACGACTAGCAGTAGTA +
Preference number: 5 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPNCRGV*ERLAVV
Trigger: TACTACTGCTAGTCGTTCCAACACTCCTCTGCAGTT...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACCAGCTCCTGAAGACTaGCTTTTGCTCTGTGAAGAG +
Preference number: 5 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSPAPED*LLLCEE
Trigger: CTCTTCACAGAGCAAAAGCAAGTCTTCAGGAGCTGG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGAACTGTATCCTGGAGATaGGGTGGGATGTCCTCTAAA +
Preference number: 5 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRTVSWR*GGMSSK
Trigger: TTTAGAGGACATCCCACCCAATCTCCAGGATACAGT...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp TCCAAAGCCAAATCTCTTGCAGCCCTCAGGATTTTCCGGTGCTTTTaGACACGAGTGACTCTTCCCAGCTGTAACTGCATTTGGGAACCG +
Preference number: 5 (lower is better)
Translates to: SKAKSLAALRIFRCF*TRVTLPSCNCIWEP
Trigger: CGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAATCCTGAGGGCTGCAAGAGATTTGGCTTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 90 bp TGCTCCAATGGTGGGAAAGCTAGGAGGAGGTGGGAGTGGCAATTCTaGAGCATTGGGATTTCTTTTCTGTATAGGGCAATTCCGGTTTCC +
Preference number: 5 (lower is better)
Translates to: CSNGGKARRRWEWQF*SIGISFLYRAIPVS
Trigger: GGAAACCGGAATTGCCCTATACAGAAAAGAAATCCCAATGCTGCAGAATTGCCACTCCCACCTCCTCCTAGCTTTCCCACCATTGGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 90 bp TGCACACCATGGGCACCAGTGTCAGAAACAGAGTTACTGCTGCCTTaGCCAGCTCCTGAAGACTTGCTTTTGCTCTGTGAAGAGTCATTT +
Preference number: 5 (lower is better)
Translates to: CTPWAPVSETELLLP*PAPEDLLLLCEESF
Trigger: AAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAGGAGCTGGGCAAGGCAGCAGTAACTCTGTTTCTGACACTGGTGCCCATGGTGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 90 bp TCTACGTCTGGTCTCTGCTCCAATGGTGGGAAAGCTAGGAGGAGGTaGGAGTGGCAATTCTGCAGCATTGGGATTTCTTTTCTGTATAGG +
Preference number: 5 (lower is better)
Translates to: STSGLCSNGGKARRR*EWQFCSIGISFLYR
Trigger: CCTATACAGAAAAGAAATCCCAATGCTGCAGAATTGCCACTCCCACCTCCTCCTAGCTTTCCCACCATTGGAGCAGAGACCAGACGTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 90 bp TTCTCTGTGATGTTACTCTCCCATGTTGGAGAAGGCTCTCCCTTCTaGGCAACTCTCACACTGCTTCGAAGAACCTTAGGGATGCTACCT +
Preference number: 5 (lower is better)
Translates to: FSVMLLSHVGEGSPF*ATLTLLRRTLGMLP
Trigger: AGGTAGCATCCCTAAGGTTCTTCGAAGCAGTGTGAGAGTTGCCCAGAAGGGAGAGCCTTCTCCAACATGGGAGAGTAACATCACAGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCTGACCAGATCCGAGGGAGAATTCTaGATCTTCTTCGTCTTTGGT +
Preference number: 5 (lower is better)
Translates to: SPRPEASHDHKSHFLLTRSEGEF*IFFVFG
Trigger: ACCAAAGACGAAGAAGATCAAGAATTCTCCCTCGGA...TCTGGTCAGCAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTCCGAGGGAGAATTCTaGATCTTCTTCGTCTTTGGT +
Preference number: 5 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPSEGEF*IFFVFG
Trigger: ACCAAAGACGAAGAAGATCAAGAATTCTCCCTCGGA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGGTTAGAATGGAGATGTaGCTCAAGGGCATTCTGTAC +
Preference number: 5 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEVRMEM*LKGILY
Trigger: GTACAGAATGCCCTTGAGCAACATCTCCATTCTAAC...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATTCTAAAATTGCAGGTTaGCCCACAAATTCCTTGTTA +
Preference number: 5 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDSKIAG*PTNSLL
Trigger: TAACAAGGAATTTGTGGGCAAACCTGCAATTTTAGA...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATTCTGGAACCTCATTTaGCTGCTCCAGCTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIFWNLI*LLQLQL
Trigger: GAGCTGGAGCTGGAGCAGCAAAATGAGGTTCCAGAA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTTTTTCTGGAACTTCTaGTGGTTGCGGGTCAGGATT +
Preference number: 5 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPFFWNF*WLRVRI
Trigger: AATCCTGACCCGCAACCACAAGAAGTTCCAGAAAAA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTTTTTCTGGAACTTCTaGTGGTTGCGGGTCAGGATT +
Preference number: 5 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEFFWNF*WLRVRI
Trigger: AATCCTGACCCGCAACCACAAGAAGTTCCAGAAAAA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCCAGGGGCTGCAGTTTTaGTCTCTTCTCCAACTACTA +
Preference number: 5 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPQGLQF*SLLQLL
Trigger: TAGTAGTTGGAGAAGAGACAAAAACTGCAGCCCCTG...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CTGGGCTGGCTTCAGGGCTCCTCCAGGGGTGTACAACAGGCACAATGCACTGATCTCAGTAAGTCTGCATaGTCTTTACAGATACTAGAA +
Preference number: 5 (lower is better)
Translates to: LGWLQGSSRGVQQAQCTDLSKSA*SLQILE
Trigger: TTCTAGTATCTGTAAAGACAATGCAGACTTACTGAG...ATCAGTGCATTGTGCCTGTTGTACACCCCTGGAGGAGCCCTGAAGCCAGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCACTGCTGATGTTTTCTaGAGGTCTGCAGTGAGAGGA +
Preference number: 5 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPTADVF*RSAVRG
Trigger: TCCTCTCACTGCAGACCTCAAGAAAACATCAGCAGT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAACTGCTGATGTTTTCTaGAGGTCTGCAGTGAGAGGA +
Preference number: 5 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSTADVF*RSAVRG
Trigger: TCCTCTCACTGCAGACCTCAAGAAAACATCAGCAGT...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCACTGTATCCTGGAGATaGGGTGGGATGTCCTCTAAA +
Preference number: 5 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPTVSWR*GGMSSK
Trigger: TTTAGAGGACATCCCACCCAATCTCCAGGATACAGT...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 90 bp CTGTGCTTCCGAGGGAGAATTCTTGATCTTCTTCGTCTTTGGTGCTaGACGACCCTTTTCTGGACTCTTTTTCCGCTTCTTGGGTTTGGT +
Preference number: 5 (lower is better)
Translates to: LCFRGRILDLLRLWC*TTLFWTLFPLLGFG
Trigger: ACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAAGATCAAGAATTCTCCCTCGGAAGCACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp CCTGCTCACTGTCATATAAGCATTCCCCATAGAAACGTGGGGCAGGTATGCCCCTTCCGCTTCTTGGGTTaGGTTCTTCTAACAGTTAAG +
Preference number: 5 (lower is better)
Translates to: PAHCHISIPHRNVGQVCPFRFLG*VLLTVK
Trigger: CTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAA...GGGGCATACCTGCCCCACGTTTCTATGGGGAATGCTTATATGACAGTGAGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTTCCGCTTCTTGGGTTaGGTTCTTCTAACAGTTAAG +
Preference number: 5 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVFRFLG*VLLTVK
Trigger: CTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCCTCTTTTTCCGCTTCTaGGGTTTGGTTCTTCTAACA +
Preference number: 5 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVLFFRF*GLVLLT
Trigger: TGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAG...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCGTTAGAATGGAGATGTaGCTCAAGGGCATTCTGTAC +
Preference number: 5 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPVRMEM*LKGILY
Trigger: GTACAGAATGCCCTTGAGCAACATCTCCATTCTAAC...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTTGCCCACAAATTCCTaGTTAGAATGGAGATGTTGC +
Preference number: 5 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQELPTNS*LEWRCC
Trigger: GCAACATCTCCATTCTAACAAGGAATTTGTGGGCAA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCTTGCCCACAAATTCCTaGTTAGAATGGAGATGTTGC +
Preference number: 5 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVLPTNS*LEWRCC
Trigger: GCAACATCTCCATTCTAACAAGGAATTTGTGGGCAA...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCCAAAGCCAAATCTCTaGCAGCCCTCAGGATTTTCC +
Preference number: 5 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLPKPNL*QPSGFS
Trigger: GGAAAATCCTGAGGGCTGCAAGAGATTTGGCTTTGG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAGTGACTTCTGCATCCTaGGTGATAGCAGATACGGCA +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVIVTSAS*VIADTA
Trigger: TGCCGTATCTGCTATCACCAAGGATGCAGAAGTCAC...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGTAGCATGTTCAGGGTaGTTGCCAACACAGTTGGGT +
Preference number: 5 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLVACSG*LPTQLG
Trigger: ACCCAACTGTGTTGGCAACAACCCTGAACATGCTAC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCCCTTCTTCCAAGGCTaGCTTTATCCAGCGCTTCTT +
Preference number: 5 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLPFFQG*LYPALL
Trigger: AAGAAGCGCTGGATAAAGCAAGCCTTGGAAGAAGGG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGCCTGAAGACTTGCTTTaGCTCTGTGAAGAGTCATTT +
Preference number: 5 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQEPEDLL*LCEESF
Trigger: AAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAGG...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCCAGCTCCTGAAGACTaGCTTTTGCTCTGTGAAGAG +
Preference number: 5 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLPAPED*LLLCEE
Trigger: CTCTTCACAGAGCAAAAGCAAGTCTTCAGGAGCTGG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCACTCTTTTTCCGCTTCTaGGGTTTGGTTCTTCTAACA +
Preference number: 5 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSLFFRF*GLVLLT
Trigger: TGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAG...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TCCCATTCTTACCCTGCAGTCATGAGTGCATGCTTTTCAGTCACGGAGGCCGTCGGCAATTCTGCAGCATaGGGATTTCTTTTCTGTATA +
Preference number: 5 (lower is better)
Translates to: SHSYPAVMSACFSVTEAVGNSAA*GFLFCI
Trigger: TATACAGAAAAGAAATCCCAATGCTGCAGAATTGCC...GACGGCCTCCGTGACTGAAAAGCATGCACTCATGACTGCAGGGTAAGAATGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACTCAACAGGGCATTCTaGCTTCTCTGCCTTGTCATT +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVILNRAF*LLCLVI
Trigger: AATGACAAGGCAGAGAAGCAAGAATGCCCTGTTGAG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAAACTGCAGAGGAGTGTaGGAACGACTAGCAGTAGTA +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVINCRGV*ERLAVV
Trigger: TACTACTGCTAGTCGTTCCAACACTCCTCTGCAGTT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGAACTGCAGAGGAGTGTaGGAACGACTAGCAGTAGTA +
Preference number: 5 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLNCRGV*ERLAVV
Trigger: TACTACTGCTAGTCGTTCCAACACTCCTCTGCAGTT...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATAACTGCTGATGTTTTCTaGAGGTCTGCAGTGAGAGGA +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVITADVF*RSAVRG
Trigger: TCCTCTCACTGCAGACCTCAAGAAAACATCAGCAGT...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp AATCTCTTGCAGCCCTCAGGATTTTCCGGTGCTTTTGAACACGAGTaGCTCTTCCCAGCTGTAACTGCATTTGGGAACCGATTACTGTAT +
Preference number: 5 (lower is better)
Translates to: NLLQPSGFSGAFEHE*LFPAVTAFGNRLLY
Trigger: ATACAGTAATCGGTTCCCAAATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAATCCTGAGGGCTGCAAGAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATCCGAGGGAGAATTCTaGATCTTCTTCGTCTTTGGT +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVISEGEF*IFFVFG
Trigger: ACCAAAGACGAAGAAGATCAAGAATTCTCCCTCGGA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGGTTAGAATGGAGATGTaGCTCAAGGGCATTCTGTAC +
Preference number: 5 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLVRMEM*LKGILY
Trigger: GTACAGAATGCCCTTGAGCAACATCTCCATTCTAAC...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATGGTAACAGCTGGAGCCCAGTCCATCCCAAATCTGCTCCCAAATACCCAGGAGTTAAAGAAATGCCCATaGACCTCAAATTGTTGTCGT +
Preference number: 5 (lower is better)
Translates to: MVTAGAQSIPNLLPNTQELKKCP*TSNCCR
Trigger: ACGACAACAATTTGAGGTCAATGGGCATTTCTTTAA...CTCCTGGGTATTTGGGAGCAGATTTGGGATGGACTGGGCTCCAGCTGTTACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp GGCCTTGATTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGGCAATTCTGCAGCATaGGGATTTCTTTTCTGTATA +
Preference number: 5 (lower is better)
Translates to: GLDSRGSWKEAAMGSLSSGNSAA*GFLFCI
Trigger: TATACAGAAAAGAAATCCCAATGCTGCAGAATTGCC...TGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAATCAAGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 90 bp AGACTCAGGGGCTGCAGTTTTTGTCTCTTCTCCAACTACTATCTCTaGACTGCTAGTAGTAATCTCTATGTCCGAGCTGCTCTGTTCTAC +
Preference number: 5 (lower is better)
Translates to: RLRGCSFCLFSNYYL*TASSNLYVRAALFY
Trigger: GTAGAACAGAGCAGCTCGGACATAGAGATTACTACTAGCAGTTCAGAGATAGTAGTTGGAGAAGAGACAAAAACTGCAGCCCCTGAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTCCAGAGGCAGCTGGAAGGAAGCAGCTATGGGCTCATTAAGTTCAGTTTGCCCTCTAAAATTGCAGGTTaGCCCACAAATTCCTTGTTA +
Preference number: 5 (lower is better)
Translates to: FQRQLEGSSYGLIKFSLPSKIAG*PTNSLL
Trigger: TAACAAGGAATTTGTGGGCAAACCTGCAATTTTAGA...GGGCAAACTGAACTTAATGAGCCCATAGCTGCTTCCTTCCAGCTGCCTCTGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGCCTGAAGACTTGCTTTaGCTCTGTGAAGAGTCATTT +
Preference number: 5 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLPEDLL*LCEESF
Trigger: AAATGACTCTTCACAGAGCAAAAGCAAGTCTTCAGG...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 90 bp TGGATTGTCAACTTCCTCATGCTCATTGGATACAGTTACTTTTTCTaGAACTTCTTGTGGTTGCGGGTCAGGATTCTCTTCTGGAACCTC +
Preference number: 5 (lower is better)
Translates to: WIVNFLMLIGYSYFF*NFLWLRVRILFWNL
Trigger: GAGGTTCCAGAAGAGAATCCTGACCCGCAACCACAAGAAGTTCCAGAAAAAGTAACTGTATCCAATGAGCATGAGGAAGTTGACAATCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATCTAAAATTGCAGGTTaGCCCACAAATTCCTTGTTA +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVISKIAG*PTNSLL
Trigger: TAACAAGGAATTTGTGGGCAAACCTGCAATTTTAGA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp TTACATCTTTCTCCAAGGCCGGAGGCCAGTCATGACCACAAGTCTCATTTCTTGTTAAAGAAATGCCCATaGACCTCAAATTGTTGTCGT +
Preference number: 5 (lower is better)
Translates to: LHLSPRPEASHDHKSHFLLKKCP*TSNCCR
Trigger: ACGACAACAATTTGAGGTCAATGGGCATTTCTTTAA...CAAGAAATGAGACTTGTGGTCATGACTGGCCTCCGGCCTTGGAGAAAGATGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATATTAAAGAAATGCCCATaGACCTCAAATTGTTGTCGT +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVILKKCP*TSNCCR
Trigger: ACGACAACAATTTGAGGTCAATGGGCATTTCTTTAA...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS-3UTR CAA 90 bp ATCTTGTCCAAAAGAAGTACGGTCCACTGCAGCACCAGGGATCACACTGTCATACTCAGTAAGTCTGCATaGTCTTTACAGATACTAGAA +
Preference number: 5 (lower is better)
Translates to: ILSKRSTVHCSTRDHTVILSKSA*SLQILE
Trigger: TTCTAGTATCTGTAAAGACAATGCAGACTTACTGAG...TATGACAGTGTGATCCCTGGTGCTGCAGTGGACCGTACTTCTTTTGGACAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 90 bp AGAGTTCTCCTGGTCATCTGTAGCCTCTTCTTTTTCTTCTTCTTCTaGTTTTTCTTCTGGATTGTCAACTTCCTCATGCTCATTGGATAC +
Preference number: 5 (lower is better)
Translates to: RVLLVICSLFFFFFF*FFFWIVNFLMLIGY
Trigger: GTATCCAATGAGCATGAGGAAGTTGACAATCCAGAAGAAAAACCAGAAGAAGAAGAAAAAGAAGAGGCTACAGATGACCAGGAGAACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 90 bp GTAATTACAGTTACTATATTCATAATCAAATGCAATGGTGACTTCTaGATCCTTGGTGATAGCAGATACGGCATAGATACACAAGTGAAT +
Preference number: 5 (lower is better)
Translates to: VITVTIFIIKCNGDF*ILGDSRYGIDTQVN
Trigger: ATTCACTTGTGTATCTATGCCGTATCTGCTATCACCAAGGATGCAGAAGTCACCATTGCATTTGATTATGAATATAGTAACTGTAATTAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp CGGCTGGCTGCTGTAATACCCTGGAGTCCCCGTAAATaGGGCCAACGAGTCTGTAGACACAGGGTGGGCAGG +
Preference number: 6 (lower is better)
Translates to: RLAAVIPWSPRK*GQRVCRHRVGR
Trigger: CCTGCCCACCCTGTGTCTACAGACTCGTTGGCCCCATTTACGGGGACTCCAGGGTATTACAGCAGCCAGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp AGGGCTGGGGTAGGACGTGGAAGAGAGGGAGGATTCTaGAGAACCGTGAGAGGGAGGGTTTCCAGGTCTCAG +
Preference number: 6 (lower is better)
Translates to: RAGVGRGREGGF*RTVRGRVSRSQ
Trigger: CTGAGACCTGGAAACCCTCCCTCTCACGGTTCTTCAGAATCCTCCCTCTCTTCCACGTCCTACCCCAGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp GTGGGTAGTGCTGTGAATTGGAAACCGCAGATACCCTaGAGGCCTGGTAGGCAGCTGACTGCCCAGCATTGG +
Preference number: 6 (lower is better)
Translates to: VGSAVNWKPQIP*RPGRQLTAQHW
Trigger: CCAATGCTGGGCAGTCAGCTGCCTACCAGGCCTCCAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 72 bp TTCTCAGCAAGGTCTGAGGACCATCTCCACTCCTGCTaGGGAAGCCAGCCTCGGAGGTGGGAACAACAGAGG +
Preference number: 6 (lower is better)
Translates to: FSARSEDHLHSC*GSQPRRWEQQR
Trigger: CCTCTGTTGTTCCCACCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 90 bp GGTCTGAGTTTCTCAGCAAGGTCTGAGGACCATCTCCACTCCTGCTaGGGAAGCCAGCCTCGGAGGTGGGAACAACAGAGGGATGAGAAG +
Preference number: 6 (lower is better)
Translates to: GLSFSARSEDHLHSC*GSQPRRWEQQRDEK
Trigger: CTTCTCATCCCTCTGTTGTTCCCACCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAACTCAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp CCAAGGCTTGCTTTATCCAGCGCTTCTTACAGGAGCTaGATGTGCCATCAGGCAGAAGGGGCCTTCGACGCC +
Preference number: 6 (lower is better)
Translates to: PRLALSSASYRS*MCHQAEGAFDA
Trigger: GGCGTCGAAGGCCCCTTCTGCCTGATGGCACATTCAGCTCCTGTAAGAAGCGCTGGATAAAGCAAGCCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp GTCCTAAACGCCTGGTCTGAGTTTCTCAGCAAGGTCTaGGGACCATCTCCACTCCTGCTTGGGAAGCCAGCC +
Preference number: 6 (lower is better)
Translates to: VLNAWSEFLSKV*GPSPLLLGKPA
Trigger: GGCTGGCTTCCCAAGCAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAACTCAGACCAGGCGTTTAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp AGGTCTGCAGTGAGAGGAAGAAGTGCCCCTGGAATCTaGCGGGCTTACCGCCTCCAAATGCGATGCAGAGGA +
Preference number: 6 (lower is better)
Translates to: RSAVRGRSAPGI*RAYRLQMRCRG
Trigger: TCCTCTGCATCGCATTTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCACTTCTTCCTCTCACTGCAGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 72 bp AGTTTCTCAGCAAGGTCTGAGGACCATCTCCACTCCTaGTTGGGAAGCCAGCCTCGGAGGTGGGAACAACAG +
Preference number: 6 (lower is better)
Translates to: SFSARSEDHLHS*LGSQPRRWEQQ
Trigger: CTGTTGTTCCCACCTCCGAGGCTGGCTTCCCAAGCAGGAGTGGAGATGGTCCTCAGACCTTGCTGAGAAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp CATGAGGCTGTATCCATTTCGACACTCCTCTTCTCCTaGGTGAGTCTGGCCAGGTGTGGTCAGCTGGGGACT +
Preference number: 6 (lower is better)
Translates to: HEAVSISTLLFS*VSLARCGQLGT
Trigger: AGTCCCCAGCTGACCACACCTGGCCAGACTCACCCAGGAGAAGAGGAGTGTCGAAATGGATACAGCCTCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp CAGAAGGGGCCTTCGACGCCTCTCAGGCATAAAGGGTaGGCCAAAGCGAATGTAGTGTTTGGGGGTGGTACA +
Preference number: 6 (lower is better)
Translates to: QKGPSTPLRHKG*AKANVVFGGGT
Trigger: TGTACCACCCCCAAACACTACATTCGCTTTGGCTCACCCTTTATGCCTGAGAGGCGTCGAAGGCCCCTTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp GTGTACACCCCCACTACCACGATGTGGGTAGTGCTGTaGATTGGAAACCGCAGATACCCTGGAGGCCTGGTA +
Preference number: 6 (lower is better)
Translates to: VYTPTTTMWVVL*IGNRRYPGGLV
Trigger: TACCAGGCCTCCAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACATCGTGGTAGTGGGGGTGTACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 72 bp CTCATTTTGCTGCTCCAGCTCCAGCTCTTTCCGCCGTaGTTTTCTACGTCTGGTCTCTGCTCCAATGGTGGG +
Preference number: 6 (lower is better)
Translates to: LILLLQLQLFPP*FSTSGLCSNGG
Trigger: CCCACCATTGGAGCAGAGACCAGACGTAGAAAAGCACGGCGGAAAGAGCTGGAGCTGGAGCAGCAAAATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 72 bp AGGCTTAGCTGGAGGTGGTTTAGGGATTGGCTTTTCTaGAGCTACATCCCCAGCATGGGAGGACCTCCGAGT +
Preference number: 6 (lower is better)
Translates to: RLSWRWFRDWLF*SYIPSMGGPPS
Trigger: ACTCGGAGGTCCTCCCATGCTGGGGATGTAGCTGCAGAAAAGCCAATCCCTAAACCACCTCCAGCTAAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp GCTGTTTCCAGAATGCGGCTGGCTGCTGTAATACCCTaGAGTCCCCGTAAATGGGGCCAACGAGTCTGTAGA +
Preference number: 6 (lower is better)
Translates to: AVSRMRLAAVIP*SPRKWGQRVCR
Trigger: TCTACAGACTCGTTGGCCCCATTTACGGGGACTCCAGGGTATTACAGCAGCCAGCCGCATTCTGGAAACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp GGAAGGGCTGTAAACAGTTGCTCCTTTAGAGAGTGCTaGGCTCAATGGCTCTGGGCCTTCTCCATCTGCAGG +
Preference number: 6 (lower is better)
Translates to: GRAVNSCSFREC*AQWLWAFSICR
Trigger: CCTGCAGATGGAGAAGGCCCAGAGCCATTGAGCTCAGCACTCTCTAAAGGAGCAACTGTTTACAGCCCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp TCTAAAGGGGGACGAACTCTGCTGAAGGAGGCTTTGTaGTTCTGTCCGTGGACTGTCACACTGCAGGAGCTG +
Preference number: 6 (lower is better)
Translates to: SKGGRTLLKEAL*FCPWTVTLQEL
Trigger: CAGCTCCTGCAGTGTGACAGTCCACGGACAGAATCACAAAGCCTCCTTCAGCAGAGTTCGTCCCCCTTTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp TGGGTGGGATGTCCTCTAAAGGGGGACGAACTCTGCTaGAGGAGGCTTTGTGATTCTGTCCGTGGACTGTCA +
Preference number: 6 (lower is better)
Translates to: WVGCPLKGDELC*RRLCDSVRGLS
Trigger: TGACAGTCCACGGACAGAATCACAAAGCCTCCTTCAGCAGAGTTCGTCCCCCTTTAGAGGACATCCCACCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 72 bp GCAGCTTGCGACAGTTCTGCCTGTTGTGCAATGGCCTaGTTCTGGCGTTTTAGTCTTTGGGCTGAACTGGTC +
Preference number: 6 (lower is better)
Translates to: AACDSSACCAMA*FWRFSLWAELV
Trigger: GACCAGTTCAGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGCACAACAGGCAGAACTGTCGCAAGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 72 bp GTCTCCCACCAAGGGAGACCCTCTATACAGTCCATCTaGTCGAGGCATAGCATTCAAAGGGGAGTAGGCGTA +
Preference number: 6 (lower is better)
Translates to: VSHQGRPSIQSI*SRHSIQRGVGV
Trigger: TACGCCTACTCCCCTTTGAATGCTATGCCTCGAGCAGATGGACTGTATAGAGGGTCTCCCTTGGTGGGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp CCAAGGCAGCTTGCGACAGTTCTGCCTGTTGTGCAATaGCCTGCTTCTGGCGTTTTAGTCTTTGGGCTGAAC +
Preference number: 6 (lower is better)
Translates to: PRQLATVLPVVQ*PASGVLVFGLN
Trigger: GTTCAGCCCAAAGACTAAAACGCCAGAAGCAGGCCATTGCACAACAGGCAGAACTGTCGCAAGCTGCCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp TTTCTTGAGGTCTGCAGTGAGAGGAAGAAGTGCCCCTaGAATCTGACGGGCTTACCGCCTCCAAATGCGATG +
Preference number: 6 (lower is better)
Translates to: FLEVCSERKKCP*NLTGLPPPNAM
Trigger: CATCGCATTTGGAGGCGGTAAGCCCGTCAGATTCCAGGGGCACTTCTTCCTCTCACTGCAGACCTCAAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp TTGCAGTTAAGCAGGGAGGGCCTATCAGCGCAGCTGTaGGTGCTGGAGTCTGGGAATCCCACTTTTGTCAAA +
Preference number: 6 (lower is better)
Translates to: LQLSREGLSAQL*VLESGNPTFVK
Trigger: TTTGACAAAAGTGGGATTCCCAGACTCCAGCACTCACAGCTGCGCTGATAGGCCCTCCCTGCTTAACTGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp AGATGGGACTCCTTCACAGGTCCTTTCACCACCAGGTaGCATGGATCCCCGAGAGAGGTCTTTCATAAAGCC +
Preference number: 6 (lower is better)
Translates to: RWDSFTGPFTTR*HGSPREVFHKA
Trigger: GGCTTTATGAAAGACCTCTCTCGGGGATCCATGTCACCTGGTGGTGAAAGGACCTGTGAAGGAGTCCCATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 72 bp CACCATGGGCACCAGTGTCAGAAACAGAGTTACTGCTaGCTTGCCCAGCTCCTGAAGACTTGCTTTTGCTCT +
Preference number: 6 (lower is better)
Translates to: HHGHQCQKQSYC*LAQLLKTCFCS
Trigger: AGAGCAAAAGCAAGTCTTCAGGAGCTGGGCAAGGCAGCAGTAACTCTGTTTCTGACACTGGTGCCCATGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp TGGCCTGCTTCTGGCGTTTTAGTCTTTGGGCTGAACTaGTCCGGTACCGAGAAATTCTACTTTTCGGTCGGG +
Preference number: 6 (lower is better)
Translates to: WPASGVLVFGLN*SGTEKFYFSVG
Trigger: CCCGACCGAAAAGTAGAATTTCTCGGTACCGGACCAGTTCAGCCCAAAGACTAAAACGCCAGAAGCAGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 90 bp GTTTCCAGGTCTCAGTGCAGTAGTTCGATAACTGTATCCTGGAGATaGGGTGGGATGTCCTCTAAAGGGGGACGAACTCTGCTGAAGGAG +
Preference number: 6 (lower is better)
Translates to: VSRSQCSSSITVSWR*GGMSSKGGRTLLKE
Trigger: CTCCTTCAGCAGAGTTCGTCCCCCTTTAGAGGACATCCCACCCAATCTCCAGGATACAGTTATCGAACTACTGCACTGAGACCTGGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp GGTCTCTGCTCCAATGGTGGGAAAGCTAGGAGGAGGTaGGAGTGGCAATTCTGCAGCATTGGGATTTCTTTT +
Preference number: 6 (lower is better)
Translates to: GLCSNGGKARRR*EWQFCSIGISF
Trigger: AAAAGAAATCCCAATGCTGCAGAATTGCCACTCCCACCTCCTCCTAGCTTTCCCACCATTGGAGCAGAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp TCCAGGTCTCAGTGCAGTAGTTCGATAACTGTATCCTaGAGATTGGGTGGGATGTCCTCTAAAGGGGGACGA +
Preference number: 6 (lower is better)
Translates to: SRSQCSSSITVS*RLGGMSSKGGR
Trigger: TCGTCCCCCTTTAGAGGACATCCCACCCAATCTCCAGGATACAGTTATCGAACTACTGCACTGAGACCTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 72 bp CAGTGGAAGGAGAAAGCTCCTCATCCCAGCTTTCTGTaGCACTGCTATCCCCACCTGATATGTTGTCCTGCT +
Preference number: 6 (lower is better)
Translates to: QWKEKAPHPSFL*HCYPHLICCPA
Trigger: AGCAGGACAACATATCAGGTGGGGATAGCAGTGCAACAGAAAGCTGGGATGAGGAGCTTTCTCCTTCCACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 90 bp GCCTATCAGCGCAGCTGTGAGTGCTGGAGTCTGGGAATCCCACTTTaGTCAAATCTAGGTCTTTTCGGTGACAAAGCTCAAACTGCAGAG +
Preference number: 6 (lower is better)
Translates to: AYQRSCECWSLGIPL*SNLGLFGDKAQTAE
Trigger: CTCTGCAGTTTGAGCTTTGTCACCGAAAAGACCTAGATTTGACAAAAGTGGGATTCCCAGACTCCAGCACTCACAGCTGCGCTGATAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp TCTAGCAAGGATACCTTTTTCCTTTGCGGTGGGTTCTaGGGAGCAGATGGGACTCCTTCACAGGTCCTTTCA +
Preference number: 6 (lower is better)
Translates to: SSKDTFFLCGGF*GADGTPSQVLS
Trigger: TGAAAGGACCTGTGAAGGAGTCCCATCTGCTCCTCAGAACCCACCGCAAAGGAAAAAGGTATCCTTGCTAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp CAGCATAAGGCAGTCCTCGACACCCATGCCTCTGAGTaGTCCCATAATTATGAGTGGAATACACGCTCTTCT +
Preference number: 6 (lower is better)
Translates to: QHKAVLDTHASE*SHNYEWNTRSS
Trigger: AGAAGAGCGTGTATTCCACTCATAATTATGGGACCACTCAGAGGCATGGGTGTCGAGGACTGCCTTATGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 72 bp TCTCAGTGCAGTAGTTCGATAACTGTATCCTGGAGATaGGGTGGGATGTCCTCTAAAGGGGGACGAACTCTG +
Preference number: 6 (lower is better)
Translates to: SQCSSSITVSWR*GGMSSKGGRTL
Trigger: CAGAGTTCGTCCCCCTTTAGAGGACATCCCACCCAATCTCCAGGATACAGTTATCGAACTACTGCACTGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 90 bp TCTCCTGAACTGTCTGTATTTCCAGCTTCAGGAGGAGTTACTGAGTaGTTACTTCCTCCTTCTTCCAAGGCAGCTTGCGACAGTTCTGCC +
Preference number: 6 (lower is better)
Translates to: SPELSVFPASGGVTE*LLPPSSKAACDSSA
Trigger: GGCAGAACTGTCGCAAGCTGCCTTGGAAGAAGGAGGAAGTAACAACTCAGTAACTCCTCCTGAAGCTGGAAATACAGACAGTTCAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp CTTAGGGATGCTACCTCCTTCTCGGAGTCGTTCAACTaGTGTAGGAACCATCCACCTACTGCTGATGTTTTC +
Preference number: 6 (lower is better)
Translates to: LRDATSFSESFN*CRNHPPTADVF
Trigger: GAAAACATCAGCAGTAGGTGGATGGTTCCTACATCAGTTGAACGACTCCGAGAAGGAGGTAGCATCCCTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 72 bp CGCAGCTGTGAGTGCTGGAGTCTGGGAATCCCACTTTaGTCAAATCTAGGTCTTTTCGGTGACAAAGCTCAA +
Preference number: 6 (lower is better)
Translates to: RSCECWSLGIPL*SNLGLFGDKAQ
Trigger: TTGAGCTTTGTCACCGAAAAGACCTAGATTTGACAAAAGTGGGATTCCCAGACTCCAGCACTCACAGCTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp AAATCTCTTGCAGCCCTCAGGATTTTCCGGTGCTTTTaGACACGAGTGACTCTTCCCAGCTGTAACTGCATT +
Preference number: 6 (lower is better)
Translates to: KSLAALRIFRCF*TRVTLPSCNCI
Trigger: AATGCAGTTACAGCTGGGAAGAGTCACTCGTGTTCAAAAGCACCGGAAAATCCTGAGGGCTGCAAGAGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp GATCTTCTTCGTCTTTGGTGCTGCACGACCCTTTTCTaGACTCTTTTTCCGCTTCTTGGGTTTGGTTCTTCT +
Preference number: 6 (lower is better)
Translates to: DLLRLWCCTTLF*TLFPLLGFGSS
Trigger: AGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGCACCAAAGACGAAGAAGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 72 bp GCTGCACGACCCTTTTCTGGACTCTTTTTCCGCTTCTaGGGTTTGGTTCTTCTAACAGTTAAGGTGATGCTT +
Preference number: 6 (lower is better)
Translates to: AARPFSGLFFRF*GLVLLTVKVML
Trigger: AAGCATCACCTTAACTGTTAGAAGAACCAAACCCAAGAAGCGGAAAAAGAGTCCAGAAAAGGGTCGTGCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS TCA 72 bp GGCTGCAGTTTTTGTCTCTTCTCCAACTACTATCTCTaGACTGCTAGTAGTAATCTCTATGTCCGAGCTGCT +
Preference number: 6 (lower is better)
Translates to: GCSFCLFSNYYL*TASSNLYVRAA
Trigger: AGCAGCTCGGACATAGAGATTACTACTAGCAGTTCAGAGATAGTAGTTGGAGAAGAGACAAAAACTGCAGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 90 bp AACTTCCTCATGCTCATTGGATACAGTTACTTTTTCTGGAACTTCTaGTGGTTGCGGGTCAGGATTCTCTTCTGGAACCTCATTTTGCTG +
Preference number: 6 (lower is better)
Translates to: NFLMLIGYSYFFWNF*WLRVRILFWNLILL
Trigger: CAGCAAAATGAGGTTCCAGAAGAGAATCCTGACCCGCAACCACAAGAAGTTCCAGAAAAAGTAACTGTATCCAATGAGCATGAGGAAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 72 bp AGATACGGCATAGATACACAAGTGAATCATCCCATCTaGAATCATGTGTCTCACCTCTGCATTTGGTGTACA +
Preference number: 6 (lower is better)
Translates to: RYGIDTQVNHPI*NHVSHLCIWCT
Trigger: TGTACACCAAATGCAGAGGTGAGACACATGATTGCAGATGGGATGATTCACTTGTGTATCTATGCCGTATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp AAAATTGCAGGTTTGCCCACAAATTCCTTGTTAGAATaGAGATGTTGCTCAAGGGCATTCTGTACATCTGCA +
Preference number: 6 (lower is better)
Translates to: KIAGLPTNSLLE*RCCSRAFCTSA
Trigger: TGCAGATGTACAGAATGCCCTTGAGCAACATCTCCATTCTAACAAGGAATTTGTGGGCAAACCTGCAATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp CTGGTCATCTGTAGCCTCTTCTTTTTCTTCTTCTTCTaGTTTTTCTTCTGGATTGTCAACTTCCTCATGCTC +
Preference number: 6 (lower is better)
Translates to: LVICSLFFFFFF*FFFWIVNFLML
Trigger: GAGCATGAGGAAGTTGACAATCCAGAAGAAAAACCAGAAGAAGAAGAAAAAGAAGAGGCTACAGATGACCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 72 bp ATAGTGTCTAAAATTGCAGGTTTGCCCACAAATTCCTaGTTAGAATGGAGATGTTGCTCAAGGGCATTCTGT +
Preference number: 6 (lower is better)
Translates to: IVSKIAGLPTNS*LEWRCCSRAFC
Trigger: ACAGAATGCCCTTGAGCAACATCTCCATTCTAACAAGGAATTTGTGGGCAAACCTGCAATTTTAGACACTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CCA 72 bp TTACAGATACTAGAAGAATTACTAGTCTCATTACTTTaGTATAGGTGCTGTGTTCTAGTCTCTTGGGGCACA +
Preference number: 6 (lower is better)
Translates to: LQILEELLVSLL*YRCCVLVSWGT
Trigger: TGTGCCCCAAGAGACTAGAACACAGCACCTATACCAAAGTAATGAGACTAGTAATTCTTCTAGTATCTGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 90 bp GTTTTATTAATAGTGTCTAAAATTGCAGGTTTGCCCACAAATTCCTaGTTAGAATGGAGATGTTGCTCAAGGGCATTCTGTACATCTGCA +
Preference number: 6 (lower is better)
Translates to: VLLIVSKIAGLPTNS*LEWRCCSRAFCTSA
Trigger: TGCAGATGTACAGAATGCCCTTGAGCAACATCTCCATTCTAACAAGGAATTTGTGGGCAAACCTGCAATTTTAGACACTATTAATAAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS GCA 72 bp GTTACTATATTCATAATCAAATGCAATGGTGACTTCTaGATCCTTGGTGATAGCAGATACGGCATAGATACA +
Preference number: 6 (lower is better)
Translates to: VTIFIIKCNGDF*ILGDSRYGIDT
Trigger: TGTATCTATGCCGTATCTGCTATCACCAAGGATGCAGAAGTCACCATTGCATTTGATTATGAATATAGTAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8
CDS CAA 72 bp TCTTCTTTTTCTTCTTCTTCTGGTTTTTCTTCTGGATaGTCAACTTCCTCATGCTCATTGGATACAGTTACT +
Preference number: 6 (lower is better)
Translates to: SSFSSSSGFSSG*STSSCSLDTVT
Trigger: AGTAACTGTATCCAATGAGCATGAGGAAGTTGACAATCCAGAAGAAAAACCAGAAGAAGAAGAAAAAGAAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000042889.12
ENSMUST00000113155.2
ENSMUST00000113157.8