RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SETD1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038384

Ensembl transcript IDs: ENSMUST00000056053.9, ENSMUST00000162839.3, ENSMUST00000163030.9, ENSMUST00000174836.8

Found 708 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCCTCAGGGCCCTGGCACCCTCTACACCTGGGCAGGGCCAAGGCTaGCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGG +
Preference number: 1 (lower is better)
Translates to: ALRALAPSTPGQGQG*REWKHPSQRPHRTG
Trigger: CCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTAGAGGGTGCCAGGGCCCTGAGGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR CCA 90 bp GCAGGGCTTGGGGGAGGCCCTCAGGGCCCTGGCACCCTCTACACCTaGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCG +
Preference number: 1 (lower is better)
Translates to: AGLGGGPQGPGTLYT*AGPRLPRVETPFPA
Trigger: CGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTAGAGGGTGCCAGGGCCCTGAGGGCCTCCCCCAAGCCCTGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR CCA 90 bp GGGATAAGGACAGCACCTGAAGTGGGTGGGGGTGTGTGTGGAGCCTaGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCC +
Preference number: 1 (lower is better)
Translates to: GIRTAPEVGGGVCGA*PRASEGSPGLRLTS
Trigger: GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACACACACCCCCACCCACTTCAGGTGCTGTCCTTATCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR CCA 90 bp AAATGTCACATGCGTACGGTCGGACAAACCCGTAATGGCAGGGCTTaGGGGAGGCCCTCAGGGCCCTGGCACCCTCTACACCTGGGCAGG +
Preference number: 1 (lower is better)
Translates to: KCHMRTVGQTRNGRA*GRPSGPWHPLHLGR
Trigger: CCTGCCCAGGTGTAGAGGGTGCCAGGGCCCTGAGGGCCTCCCCCAAGCCCTGCCATTACGGGTTTGTCCGACCGTACGCATGTGACATTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR TCA 90 bp CTAGTCCAAGGTCAGCCTGGACCCTGGGCCCACACCCAGTTTCACTaGGGCCTCCGGATTCCCCACAGGGCTCCACCTCTGATTCTGCCT +
Preference number: 1 (lower is better)
Translates to: LVQGQPGPWAHTQFH*GLRIPHRAPPLILP
Trigger: AGGCAGAATCAGAGGTGGAGCCCTGTGGGGAATCCGGAGGCCTCAGTGAAACTGGGTGTGGGCCCAGGGTCCAGGCTGACCTTGGACTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR TCA 90 bp AGGAGACACAACACCACAGAGCAGCATTCTCAGGGGTGGGGGAAATaGCTGAGGCCAGAGCCAGGGAGGGAAGACAGACGGACGGACGGA +
Preference number: 1 (lower is better)
Translates to: RRHNTTEQHSQGWGK*LRPEPGREDRRTDG
Trigger: TCCGTCCGTCCGTCTGTCTTCCCTCCCTGGCTCTGGCCTCAGTCATTTCCCCCACCCCTGAGAATGCTGCTCTGTGGTGTTGTGTCTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR CCA 90 bp GCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTaGCATCCGAATGAGAAAGTAAACATTGAACCCAAGGATTGGGGG +
Preference number: 1 (lower is better)
Translates to: APPPHWGHPGRLHRC*HPNEKVNIEPKDWG
Trigger: CCCCCAATCCTTGGGTTCAATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR CCA 90 bp GAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCTGGCCTCCTaGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGG +
Preference number: 1 (lower is better)
Translates to: EKQPARYGNKYALAS*VGASSRVTWVWGLG
Trigger: CCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR TCA 90 bp GACCAAGCAGCCCTTCCCTGGCATCTGGGCATCTTCATCCCTTTGTaGTGGGGGTCAGTAGGGAAGATGAAGAAAGCCCCCAGCGAGCCG +
Preference number: 1 (lower is better)
Translates to: DQAALPWHLGIFIPL*WGSVGKMKKAPSEP
Trigger: CGGCTCGCTGGGGGCTTTCTTCATCTTCCCTACTGACCCCCATCACAAAGGGATGAAGATGCCCAGATGCCAGGGAAGGGCTGCTTGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR GCA 90 bp CCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTaGTGGCATCCGAATGAGAAAGTAAACATTGAACCCAAGGATTGG +
Preference number: 1 (lower is better)
Translates to: PAPPPHWGHPGRLHR*WHPNEKVNIEPKDW
Trigger: CCAATCCTTGGGTTCAATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR TCA 90 bp TCCCTCCCTGTCACCTGTGGGTCAAATGAAGCCTGGAAAGGAGACTaGACACGATTGCAGTGCCTGAGTTCCTGGGGTCCTCAGTACAGA +
Preference number: 1 (lower is better)
Translates to: SLPVTCGSNEAWKGD*TRLQCLSSWGPQYR
Trigger: TCTGTACTGAGGACCCCAGGAACTCAGGCACTGCAATCGTGTTCAGTCTCCTTTCCAGGCTTCATTTGACCCACAGGTGACAGGGAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR CCA 90 bp GGGTTTAAAGGTGCGCACCATCACACCTGGCCTCAGCCCACCTCTTaGACACCTTCCGTCTTTCATATGACTCCAGAATTCCTACTGCGC +
Preference number: 1 (lower is better)
Translates to: GFKGAHHHTWPQPTS*TPSVFHMTPEFLLR
Trigger: GCGCAGTAGGAATTCTGGAGTCATATGAAAGACGGAAGGTGTCCAAGAGGTGGGCTGAGGCCAGGTGTGATGGTGCGCACCTTTAAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR TCA 90 bp TGGTCCACGGGTGAGGTCAGTCCCACCCGGAGCACTTCATCTTGGTaGGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACAT +
Preference number: 1 (lower is better)
Translates to: WSTGEVSPTRSTSSW*GLWVTTVTVQKYLH
Trigger: ATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGACTGACCTCACCCGTGGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR CCA 90 bp CTCCATCACCTAAATGCTGGGTTTAAAGGTGCGCACCATCACACCTaGCCTCAGCCCACCTCTTGGACACCTTCCGTCTTTCATATGACT +
Preference number: 1 (lower is better)
Translates to: LHHLNAGFKGAHHHT*PQPTSWTPSVFHMT
Trigger: AGTCATATGAAAGACGGAAGGTGTCCAAGAGGTGGGCTGAGGCCAGGTGTGATGGTGCGCACCTTTAAACCCAGCATTTAGGTGATGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR GCA 90 bp TTCAGAGCTCACTATGTTGACCAGGCTAGCTCGCAGAAATTCACCTaGCTCCATCACCTAAATGCTGGGTTTAAAGGTGCGCACCATCAC +
Preference number: 1 (lower is better)
Translates to: FRAHYVDQASSQKFT*LHHLNAGFKGAHHH
Trigger: GTGATGGTGCGCACCTTTAAACCCAGCATTTAGGTGATGGAGGCAGGTGAATTTCTGCGAGCTAGCCTGGTCAACATAGTGAGCTCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR CCA 90 bp TTAATTGCCAATCGAAATAATCCTCTCAACCTTCAGACGGGCCTGTaGGCACAGTCTCAAACACAGAGGGCCTGTGGGCACAGTCTCAAA +
Preference number: 1 (lower is better)
Translates to: LIANRNNPLNLQTGL*AQSQTQRACGHSLK
Trigger: TTTGAGACTGTGCCCACAGGCCCTCTGTGTTTGAGACTGTGCCCACAGGCCCGTCTGAAGGTTGAGAGGATTATTTCGATTGGCAATTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR TCA 90 bp ATGACTCCAGAATTCCTACTGCGCCCATTGTACAGACATAACAACTaGGCTCAAGAGAAAAGCCCCTTATTCAGGCTTCTCATCTCCTCT +
Preference number: 1 (lower is better)
Translates to: MTPEFLLRPLYRHNN*AQEKSPLFRLLISS
Trigger: AGAGGAGATGAGAAGCCTGAATAAGGGGCTTTTCTCTTGAGCTCAGTTGTTATGTCTGTACAATGGGCGCAGTAGGAATTCTGGAGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGTGGGGGTGTGTGTaGAGCCTGGCCCAGGGCGAG +
Preference number: 2 (lower is better)
Translates to: RAKAAESGNTLPSAPTALGWGCV*SLAQGE
Trigger: CTCGCCCTGGGCCAGGCTCCACACACACCCCCACCC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GCGGATCCCGTGACGGGGCTCAGTGAGGCCCTGCCAGGGACCAAGCAGCCCTTCCGTAATGGCAGGGCTTaGGGGAGGCCCTCAGGGCCC +
Preference number: 2 (lower is better)
Translates to: ADPVTGLSEALPGTKQPFRNGRA*GRPSGP
Trigger: GGGCCCTGAGGGCCTCCCCCAAGCCCTGCCATTACG...GAAGGGCTGCTTGGTCCCTGGCAGGGCCTCACTGAGCCCCGTCACGGGATCCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR-3UTR TCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACAGGGGTGGGGGAAATaGCTGAGGCCAGAGCCAGGG +
Preference number: 2 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGQGWGK*LRPEPG
Trigger: CCCTGGCTCTGGCCTCAGTCATTTCCCCCACCCCTG...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR CAA 90 bp GAAACTGTGGGGTCTGCTCGCTGCATCGACGGGCAGGTAGGGGCCTaGCGGGTCTGTAGTGTTCTGAGGTTGAGGCCGCGGGAGGCCCCC +
Preference number: 2 (lower is better)
Translates to: ETVGSARCIDGQVGA*RVCSVLRLRPREAP
Trigger: GGGGGCCTCCCGCGGCCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCGAGCAGACCCCACAGTTTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTGTCTGGGACCAGCTTaGCTCCCCCAGGGTCTACCA +
Preference number: 2 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVACLGPA*LPQGLP
Trigger: TGGTAGACCCTGGGGGAGCCAAGCTGGTCCCAGACA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp TCAGTAGGGAAGATGAAGAAAGCCCCCAGCGAGCCGGCCTGCCCGAGGAACTCAGGGTGGGGGTGTGTGTaGAGCCTGGCCCAGGGCGAG +
Preference number: 2 (lower is better)
Translates to: SVGKMKKAPSEPACPRNSGWGCV*SLAQGE
Trigger: CTCGCCCTGGGCCAGGCTCCACACACACCCCCACCC...TGAGTTCCTCGGGCAGGCCGGCTCGCTGGGGGCTTTCTTCATCTTCCCTACTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCGAGGAAGTTCCTGTCTaGGACCAGCTTGGCTCCCCC +
Preference number: 2 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPEEVPV*DQLGSP
Trigger: GGGGGAGCCAAGCTGGTCCCAGACAGGAACTTCCTC...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR GCA 90 bp GGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGCTGGGGGTGGGGGGGGCAGGGCCAAGGCTaGCGAGAGTGGAAACACCCT +
Preference number: 2 (lower is better)
Translates to: GPTDQEYCIPFLGCWGWGGQGQG*REWKHP
Trigger: AGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCC...CCCCCACCCCCAGCATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCC
63% GC, longest homopolymer 8 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGGGCCGGGAGAAACTGTaGGGTCTGCTCGCTGCATCG +
Preference number: 2 (lower is better)
Translates to: GNKYALASWVGASSRVTWGREKL*GLLAAS
Trigger: CGATGCAGCGAGCAGACCCCACAGTTTCTCCCGGCC...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GTCCCACCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGAGGCCCTCAGGGCCCTaGCACCCTCTACACCTGGGC +
Preference number: 2 (lower is better)
Translates to: VPPGALHLGEDSGSQQSRRPSGP*HPLHLG
Trigger: GCCCAGGTGTAGAGGGTGCCAGGGCCCTGAGGGCCT...CCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGACGGAAAGACGCAGGTaGAGAGACAGAGAAGCCCTT +
Preference number: 2 (lower is better)
Translates to: RAKAAESGNTLPSAPTALTERRR*RDREAL
Trigger: AAGGGCTTCTCTGTCTCTCCACCTGCGTCTTTCCGT...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR TCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGACAGGGCTCCACCTCTaGTTCTGCCTTCACATTTTC +
Preference number: 2 (lower is better)
Translates to: RAKAAESGNTLPSAPTALTGLHL*FCLHIF
Trigger: GAAAATGTGAAGGCAGAATCAGAGGTGGAGCCCTGT...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGACGGAAAGACGCAGGTaGAGAGACAGAGAAGCCCTT +
Preference number: 2 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGTERRR*RDREAL
Trigger: AAGGGCTTCTCTGTCTCTCCACCTGCGTCTTTCCGT...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GCGGATCCCGTGACGGGGCTCAGTGAGGCCCTGCCAGGGACCAAGCAGCCCTTCAGGCTCCATCGTTGCTaGCATCCGAATGAGAAAGTA +
Preference number: 2 (lower is better)
Translates to: ADPVTGLSEALPGTKQPFRLHRC*HPNEKV
Trigger: TACTTTCTCATTCGGATGCCAGCAACGATGGAGCCT...GAAGGGCTGCTTGGTCCCTGGCAGGGCCTCACTGAGCCCCGTCACGGGATCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCTTCCCGCTGCGGGGCTaGGGCTGCGGGTGGGTCCTG +
Preference number: 2 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSFPLRG*GCGWVL
Trigger: CAGGACCCACCCGCAGCCCCAGCCCCGCAGCGGGAA...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGGTGTGTGTGGAGCCTaGCCCAGGGCGAGCGAGGGT +
Preference number: 2 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIGVCGA*PRASEG
Trigger: ACCCTCGCTCGCCCTGGGCCAGGCTCCACACACACC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR TCA 90 bp GCGCACCATCACACCTGGCCTCAGCCCACCTCTTGGACACCTTCCGTCTTTCATGCCTGGAAAGGAGACTaGACACGATTGCAGTGCCTG +
Preference number: 2 (lower is better)
Translates to: AHHHTWPQPTSWTPSVFHAWKGD*TRLQCL
Trigger: CAGGCACTGCAATCGTGTTCAGTCTCCTTTCCAGGC...ATGAAAGACGGAAGGTGTCCAAGAGGTGGGCTGAGGCCAGGTGTGATGGTGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR-3UTR CCA 90 bp GTTGACCAGGCTAGCTCGCAGAAATTCACCTGCCTCCATCACCTAAATGCTGGGGCGCACCATCACACCTaGCCTCAGCCCACCTCTTGG +
Preference number: 2 (lower is better)
Translates to: VDQASSQKFTCLHHLNAGAHHHT*PQPTSW
Trigger: CCAAGAGGTGGGCTGAGGCCAGGTGTGATGGTGCGC...CCCAGCATTTAGGTGATGGAGGCAGGTGAATTTCTGCGAGCTAGCCTGGTCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR-3UTR TCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGACAGGGCTCCACCTCTaGTTCTGCCTTCACATTTTC +
Preference number: 2 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRTGLHL*FCLHIF
Trigger: GAAAATGTGAAGGCAGAATCAGAGGTGGAGCCCTGT...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp CACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTGGTGTGTGTGGAGCCTaGCCCAGGGCGAGCGAGGGT +
Preference number: 2 (lower is better)
Translates to: HFILVRTLGHNSHGPEIFGVCGA*PRASEG
Trigger: ACCCTCGCTCGCCCTGGGCCAGGCTCCACACACACC...AAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR-3UTR TCA 90 bp AGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCCAGGGGTGGGGGAAATaGCTGAGGCCAGAGCCAGGG +
Preference number: 2 (lower is better)
Translates to: RTLGHNSHGPEIFTCLLCQGWGK*LRPEPG
Trigger: CCCTGGCTCTGGCCTCAGTCATTTCCCCCACCCCTG...GCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR-3UTR TCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCAGGGGTGGGGGAAATaGCTGAGGCCAGAGCCAGGG +
Preference number: 2 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPQGWGK*LRPEPG
Trigger: CCCTGGCTCTGGCCTCAGTCATTTCCCCCACCCCTG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR TCA 90 bp AGCTCGCAGAAATTCACCTGCCTCCATCACCTAAATGCTGGGTTTAAAGGTGCGCACGATTGCAGTGCCTaGGTTCCTGGGGTCCTCAGT +
Preference number: 2 (lower is better)
Translates to: SSQKFTCLHHLNAGFKGAHDCSA*VPGVLS
Trigger: ACTGAGGACCCCAGGAACTCAGGCACTGCAATCGTG...CGCACCTTTAAACCCAGCATTTAGGTGATGGAGGCAGGTGAATTTCTGCGAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR-3UTR TCA 90 bp GTTGACCAGGCTAGCTCGCAGAAATTCACCTGCCTCCATCACCTAAATGCTGGGCACCTGTGGGTCAAATaGAGCCTGGAAAGGAGACTG +
Preference number: 2 (lower is better)
Translates to: VDQASSQKFTCLHHLNAGHLWVK*SLERRL
Trigger: CAGTCTCCTTTCCAGGCTTCATTTGACCCACAGGTG...CCCAGCATTTAGGTGATGGAGGCAGGTGAATTTCTGCGAGCTAGCCTGGTCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR-3UTR CCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCTTCCCGCTGCGGGGCTaGGGCTGCGGGTGGGTCCTG +
Preference number: 2 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFFPLRG*GCGWVL
Trigger: CAGGACCCACCCGCAGCCCCAGCCCCGCAGCGGGAA...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp AGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCGGTCAGCCTGGACCCTaGGCCCACACCCAGTTTCAC +
Preference number: 2 (lower is better)
Translates to: RTLGHNSHGPEIFTCLLCGQPGP*AHTQFH
Trigger: GTGAAACTGGGTGTGGGCCCAGGGTCCAGGCTGACC...GCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR-3UTR CCA 90 bp GCTCACTATGTTGACCAGGCTAGCTCGCAGAAATTCACCTGCCTCCATCACCTACAGTGCCTGAGTTCCTaGGGTCCTCAGTACAGAGGT +
Preference number: 2 (lower is better)
Translates to: AHYVDQASSQKFTCLHHLQCLSS*GPQYRG
Trigger: ACCTCTGTACTGAGGACCCCAGGAACTCAGGCACTG...TAGGTGATGGAGGCAGGTGAATTTCTGCGAGCTAGCCTGGTCAACATAGTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGGTCAGCCTGGACCCTaGGCCCACACCCAGTTTCAC +
Preference number: 2 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPGQPGP*AHTQFH
Trigger: GTGAAACTGGGTGTGGGCCCAGGGTCCAGGCTGACC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTGGGTGGGGGTGTGTGTaGAGCCTGGCCCAGGGCGAG +
Preference number: 2 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLGWGCV*SLAQGE
Trigger: CTCGCCCTGGGCCAGGCTCCACACACACCCCCACCC...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTAGGCCCTCAGGGCCCTaGCACCCTCTACACCTGGGC +
Preference number: 2 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLRPSGP*HPLHLG
Trigger: GCCCAGGTGTAGAGGGTGCCAGGGCCCTGAGGGCCT...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR GCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCGGGCAGGGCCAAGGCTaGCGAGAGTGGAAACACCCT +
Preference number: 2 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFGQGQG*REWKHP
Trigger: AGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCC...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR GCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGGGAGGCTCCATCGTTaGTGGCATCCGAATGAGAAA +
Preference number: 2 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPGRLHR*WHPNEK
Trigger: TTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTGGTCAGCCTGGACCCTaGGCCCACACCCAGTTTCAC +
Preference number: 2 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLGQPGP*AHTQFH
Trigger: GTGAAACTGGGTGTGGGCCCAGGGTCCAGGCTGACC...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR GCA 90 bp TTTCAAAGAAAAATGGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGGGGTGGATGGGACTTaGTGTTACTGTGTGTGTCTT +
Preference number: 2 (lower is better)
Translates to: FQRKMGPQIRSIAYPSWDGVDGT*CYCVCL
Trigger: AAGACACACACAGTAACAGCAAGTCCCATCCACCCC...ATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCCATTTTTCTTTGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTAGTCCAAGGTCAGCCTaGACCCTGGGCCCACACCCA +
Preference number: 2 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSSPRSA*TLGPHP
Trigger: TGGGTGTGGGCCCAGGGTCCAGGCTGACCTTGGACT...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTGGCCGGGAGAAACTGTaGGGTCTGCTCGCTGCATCG +
Preference number: 2 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSGREKL*GLLAAS
Trigger: CGATGCAGCGAGCAGACCCCACAGTTTCTCCCGGCC...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTGAGGAAGTTCCTGTCTaGGACCAGCTTGGCTCCCCC +
Preference number: 2 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLEEVPV*DQLGSP
Trigger: GGGGGAGCCAAGCTGGTCCCAGACAGGAACTTCCTC...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTTGTCTGGGACCAGCTTaGCTCCCCCAGGGTCTACCA +
Preference number: 2 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSCLGPA*LPQGLP
Trigger: TGGTAGACCCTGGGGGAGCCAAGCTGGTCCCAGACA...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCAGGCTCCATCGTTGCTaGCATCCGAATGAGAAAGTA +
Preference number: 2 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPRLHRC*HPNEKV
Trigger: TACTTTCTCATTCGGATGCCAGCAACGATGGAGCCT...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp AAAACAAGTTACATACAGATGACAGAGTCTATACGCACAGACAACCCTAAAATTGAAATAAATACGCCCTaGCCTCCTGGGTGGGGGCCT +
Preference number: 2 (lower is better)
Translates to: KTSYIQMTESIRTDNPKIEINTP*PPGWGP
Trigger: AGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTC...AATTTTAGGGTTGTCTGTGCGTATAGACTCTGTCATCTGTATGTAACTTGTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR-3UTR GCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTGGGAGGCTCCATCGTTaGTGGCATCCGAATGAGAAA +
Preference number: 2 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLGRLHR*WHPNEK
Trigger: TTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCC...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTACGGAAAGACGCAGGTaGAGAGACAGAGAAGCCCTT +
Preference number: 2 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSTERRR*RDREAL
Trigger: AAGGGCTTCTCTGTCTCTCCACCTGCGTCTTTCCGT...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CCA 90 bp AAAACAAGTTACATACAGATGACAGAGTCTATACGCACAGACAACCCTAAAATTCCCTTCCCTGGCATCTaGGCATCTTCATCCCTTTGT +
Preference number: 2 (lower is better)
Translates to: KTSYIQMTESIRTDNPKIPFPGI*ASSSLC
Trigger: ACAAAGGGATGAAGATGCCCAGATGCCAGGGAAGGG...AATTTTAGGGTTGTCTGTGCGTATAGACTCTGTCATCTGTATGTAACTTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR CCA 72 bp GGGGGAGGCCCTCAGGGCCCTGGCACCCTCTACACCTaGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCC +
Preference number: 3 (lower is better)
Translates to: GGGPQGPGTLYT*AGPRLPRVETP
Trigger: GGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTAGAGGGTGCCAGGGCCCTGAGGGCCTCCCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR GCA 72 bp GCCCTGGCACCCTCTACACCTGGGCAGGGCCAAGGCTaGCGAGAGTGGAAACACCCTTCCCAGCGCCCCCAC +
Preference number: 3 (lower is better)
Translates to: ALAPSTPGQGQG*REWKHPSQRPH
Trigger: GTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTAGAGGGTGCCAGGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR CCA 72 bp GTGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTaGGCTACGGCTGACATCCTCGGCCTTTGGCACGCG +
Preference number: 3 (lower is better)
Translates to: VWSLAQGERGFS*ATADILGLWHA
Trigger: CGCGTGCCAAAGGCCGAGGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR CCA 72 bp CCCTCTACACCTGGGCAGGGCCAAGGCTGCCGAGAGTaGAAACACCCTTCCCAGCGCCCCCACCGCACTGGG +
Preference number: 3 (lower is better)
Translates to: PSTPGQGQGCRE*KHPSQRPHRTG
Trigger: CCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTAGAGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR TCA 72 bp GGTCAGCCTGGACCCTGGGCCCACACCCAGTTTCACTaGGGCCTCCGGATTCCCCACAGGGCTCCACCTCTG +
Preference number: 3 (lower is better)
Translates to: GQPGPWAHTQFH*GLRIPHRAPPL
Trigger: CAGAGGTGGAGCCCTGTGGGGAATCCGGAGGCCTCAGTGAAACTGGGTGTGGGCCCAGGGTCCAGGCTGACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGTGTAGTGTTCTGAGGTaGAGGCCGCGGGAGGCCCCC +
Preference number: 3 (lower is better)
Translates to: GNKYALASWVGASSRVTWCSVLR*RPREAP
Trigger: GGGGGCCTCCCGCGGCCTCAACCTCAGAACACTACA...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR-3UTR CAA 90 bp GGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGCTGGGGGTGGGGGCTGTCTGGGACCAGCTaGGCTCCCCCAGGGTCTACC +
Preference number: 3 (lower is better)
Translates to: GPTDQEYCIPFLGCWGWGLSGTS*APPGST
Trigger: GGTAGACCCTGGGGGAGCCAAGCTGGTCCCAGACAG...CCCCCACCCCCAGCATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR TCA 72 bp AAGGTTAATGCATGCGGATCCCGTGACGGGGCTCAGTaGGGCCCTGCCAGGGACCAAGCAGCCCTTCCCTGG +
Preference number: 3 (lower is better)
Translates to: KVNACGSRDGAQ*GPARDQAALPW
Trigger: CCAGGGAAGGGCTGCTTGGTCCCTGGCAGGGCCTCACTGAGCCCCGTCACGGGATCCGCATGCATTAACCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR TCA 72 bp GAGGTACCAAGAGGCTCCTGCCACCTGGTCCACGGGTaGGGTCAGTCCCACCCGGAGCACTTCATCTTGGTG +
Preference number: 3 (lower is better)
Translates to: EVPRGSCHLVHG*GQSHPEHFILV
Trigger: CACCAAGATGAAGTGCTCCGGGTGGGACTGACCTCACCCGTGGACCAGGTGGCAGGAGCCTCTTGGTACCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR TCA 72 bp GGTGAGGTCAGTCCCACCCGGAGCACTTCATCTTGGTaGGGACTCTGGGTCACAACAGTCACGGTCCAGAAA +
Preference number: 3 (lower is better)
Translates to: GEVSPTRSTSSW*GLWVTTVTVQK
Trigger: TTTCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGACTGACCTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR GCA 72 bp CCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTaGTGGCATCCGAATGAGAAAGTAAACATTGAACCC +
Preference number: 3 (lower is better)
Translates to: PPHWGHPGRLHR*WHPNEKVNIEP
Trigger: GGGTTCAATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR TCA 72 bp AAGCCTGGAAAGGAGACTGAACACGATTGCAGTGCCTaGGTTCCTGGGGTCCTCAGTACAGAGGTGGGGACA +
Preference number: 3 (lower is better)
Translates to: KPGKETEHDCSA*VPGVLSTEVGT
Trigger: TGTCCCCACCTCTGTACTGAGGACCCCAGGAACTCAGGCACTGCAATCGTGTTCAGTCTCCTTTCCAGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR CCA 72 bp CCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTaGCATCCGAATGAGAAAGTAAACATTGAACCCAAG +
Preference number: 3 (lower is better)
Translates to: PHWGHPGRLHRC*HPNEKVNIEPK
Trigger: CTTGGGTTCAATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR TCA 72 bp GTCACCTGTGGGTCAAATGAAGCCTGGAAAGGAGACTaGACACGATTGCAGTGCCTGAGTTCCTGGGGTCCT +
Preference number: 3 (lower is better)
Translates to: VTCGSNEAWKGD*TRLQCLSSWGP
Trigger: AGGACCCCAGGAACTCAGGCACTGCAATCGTGTTCAGTCTCCTTTCCAGGCTTCATTTGACCCACAGGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR CCA 72 bp AATCGAAATAATCCTCTCAACCTTCAGACGGGCCTGTaGGCACAGTCTCAAACACAGAGGGCCTGTGGGCAC +
Preference number: 3 (lower is better)
Translates to: NRNNPLNLQTGL*AQSQTQRACGH
Trigger: GTGCCCACAGGCCCTCTGTGTTTGAGACTGTGCCCACAGGCCCGTCTGAAGGTTGAGAGGATTATTTCGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
3UTR CCA 72 bp CTAAATGCTGGGTTTAAAGGTGCGCACCATCACACCTaGCCTCAGCCCACCTCTTGGACACCTTCCGTCTTT +
Preference number: 3 (lower is better)
Translates to: LNAGFKGAHHHT*PQPTSWTPSVF
Trigger: AAAGACGGAAGGTGTCCAAGAGGTGGGCTGAGGCCAGGTGTGATGGTGCGCACCTTTAAACCCAGCATTTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR GCA 72 bp CACTATGTTGACCAGGCTAGCTCGCAGAAATTCACCTaGCTCCATCACCTAAATGCTGGGTTTAAAGGTGCG +
Preference number: 3 (lower is better)
Translates to: HYVDQASSQKFT*LHHLNAGFKGA
Trigger: CGCACCTTTAAACCCAGCATTTAGGTGATGGAGGCAGGTGAATTTCTGCGAGCTAGCCTGGTCAACATAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
3UTR-3UTR CAA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTCTGTCTGGGACCAGCTaGGCTCCCCCAGGGTCTACC +
Preference number: 3 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLLSGTS*APPGST
Trigger: GGTAGACCCTGGGGGAGCCAAGCTGGTCCCAGACAG...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR TCA 72 bp GAATTCCTACTGCGCCCATTGTACAGACATAACAACTaGGCTCAAGAGAAAAGCCCCTTATTCAGGCTTCTC +
Preference number: 3 (lower is better)
Translates to: EFLLRPLYRHNN*AQEKSPLFRLL
Trigger: GAGAAGCCTGAATAAGGGGCTTTTCTCTTGAGCTCAGTTGTTATGTCTGTACAATGGGCGCAGTAGGAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
CDS-3UTR GCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTGGGCTGCCAGGCACCTaGGGGGAGCTCAGGGACAGG +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAGLPGT*GELRDR
Trigger: CCTGTCCCTGAGCTCCCCGCAGGTGCCTGGCAGCCC...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCGGGCGCTGGCAAGGGTaGCGGGGGCACTGTCACTGC +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSGRWQG*RGHCHC
Trigger: GCAGTGACAGTGCCCCCGCCACCCTTGCCAGCGCCC...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCGTAGCGGCGGAAGGATaGGTGGGGGCGGGACACCCG +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSVAAEG*VGAGHP
Trigger: CGGGTGTCCCGCCCCCACCCATCCTTCCGCCGCTAC...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCGGACAGCATGGACGGTaGGGATCTCCGGGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSGQHGR*GSPGPA
Trigger: GGCCGGCCCCGGAGATCCCCACCGTCCATGCTGTCC...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCGCGGCTCCCAAAGGCTaGTGTGGCGGTGGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSAAPKG*CGGGLL
Trigger: GAGGAGCCCACCGCCACAGCAGCCTTTGGGAGCCGC...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCGGGCGCTGGCAAGGGTaGCGGGGGCACTGTCACTGC +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSGRWQG*RGHCHC
Trigger: GCAGTGACAGTGCCCCCGCCACCCTTGCCAGCGCCC...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCGGGGCCTGGCTCTTCTaGGGGCTCTGGGCTCCCTTC +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSGAWLF*GLWAPF
Trigger: GAAGGGAGCCCAGAGCCCCCAGAAGAGCCAGGCCCC...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGACAGCATGGACGGTaGGGATCTCCGGGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALGQHGR*GSPGPA
Trigger: GGCCGGCCCCGGAGATCCCCACCGTCCATGCTGTCC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAGCGGCTCCCAAAGGCTaGTGTGGCGGTGGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGAAPKG*CGGGLL
Trigger: GAGGAGCCCACCGCCACAGCAGCCTTTGGGAGCCGC...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCCGCCCCGCAGTCCAATaGCCAGGCCTAGGCCCTCGT +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSRPAVQ*PGLGPR
Trigger: ACGAGGGCCTAGGCCTGGGCATTGGACTGCGGGGCG...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGAGGCTGCTGTGGCGGTaGGCTCCTCAGGGGGTGGCG +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGRLLWR*APQGVA
Trigger: CGCCACCCCCTGAGGAGCCCACCGCCACAGCAGCCT...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTCTGGGGTCACCACCATaGGCTTGGGGCAGTCAGCGC +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVALGSPP*AWGSQR
Trigger: GCGCTGACTGCCCCAAGCCCATGGTGGTGACCCCAG...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAGGGCAGGGGCAGGTTTaGAGCCAGCACGTTGGGGGC +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGGQGQV*SQHVGG
Trigger: GCCCCCAACGTGCTGGCTCCAAACCTGCCCCTGCCC...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGGGCGCTGGCAAGGGTaGCGGGGGCACTGTCACTGC +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGGRWQG*RGHCHC
Trigger: GCAGTGACAGTGCCCCCGCCACCCTTGCCAGCGCCC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
69% GC, longest homopolymer 7 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCGTAGCGGCGGAAGGATaGGTGGGGGCGGGACACCCG +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPVAAEG*VGAGHP
Trigger: CGGGTGTCCCGCCCCCACCCATCCTTCCGCCGCTAC...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCTCTCCGGGGCCGGCCTaGCTTCCTCTTGATGGGGGT +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSSPGPA*LPLDGG
Trigger: ACCCCCATCAAGAGGAAGCCAGGCCGGCCCCGGAGA...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTCTCATCCATCCGCTCTaGGGTGGGGGTCCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVALIHPL*GGGPVS
Trigger: GGAGACAGGACCCCCACCTCAGAGCGGATGGATGAG...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGGCAGTCAGCGCTGGTaGTGGGGGCCGAGGGCATCT +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGGSQRW*WGPRAS
Trigger: AGATGCCCTCGGCCCCCATCACCAGCGCTGACTGCC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
68% GC, longest homopolymer 6 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCGGCCTGGCTTCCTCTTaGTGGGGGTTGGGCAGGGAG +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSGLASS*WGLGRE
Trigger: CTCCCTGCCCAACCCCCATCAAGAGGAAGCCAGGCC...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCTGTCACAGCTGCCGGTaGAGGAGGACAAGAGGCGCC +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSCHSCR*RRTRGA
Trigger: GGCGCCTCTTGTCCTCCTTCACCGGCAGCTGTGACA...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTCAGGGACAGGCCACTaGTGCTCCCTGACAGTGGGG +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVASGTGH*CSLTVG
Trigger: CCCCACTGTCAGGGAGCAGCAGTGGCCTGTCCCTGA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTGGCTTCTCCTTGGCTaGAGGCTCAGCGGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAWLLLG*RLSGWQ
Trigger: CTGCCACCCGCTGAGCCTCCAGCCAAGGAGAAGCCA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCGGATCCCGTGACGGGGCTCAGTGAGGCCCTGCCAGGGACCAAGCAGCCCTTCACCAGGAGGGGTGCCTaGCTTCTCCTTGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: ADPVTGLSEALPGTKQPFTRRGA*LLLGWR
Trigger: CCTCCAGCCAAGGAGAAGCCAGGCACCCCTCCTGGT...GAAGGGCTGCTTGGTCCCTGGCAGGGCCTCACTGAGCCCCGTCACGGGATCCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGTCGAGGGGGCGGCAATaGCGGCTGCAAGGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALSRGRQ*RLQGQG
Trigger: TCCTTGCCCTTGCAGCCGCCATTGCCGCCCCCTCGA...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCTCGAGGGGGCGGCAATaGCGGCTGCAAGGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSSRGRQ*RLQGQG
Trigger: TCCTTGCCCTTGCAGCCGCCATTGCCGCCCCCTCGA...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGATCGAGGGGGCGGCAATaGCGGCTGCAAGGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGSRGRQ*RLQGQG
Trigger: TCCTTGCCCTTGCAGCCGCCATTGCCGCCCCCTCGA...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAGAGGCCTGGGGTACGTaGAGGGTGGTCTTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGEAWGT*RVVFWG
Trigger: CCCCCAGAAGACCACCCTCCACGTACCCCAGGCCTC...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGAAAATGGGGGCCGGTaGCTGGCCTGGCAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALENGGR*LAWQEE
Trigger: CTCCTCCTGCCAGGCCAGCCACCGGCCCCCATTTTC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCGAAAATGGGGGCCGGTaGCTGGCCTGGCAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSENGGR*LAWQEE
Trigger: CTCCTCCTGCCAGGCCAGCCACCGGCCCCCATTTTC...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTCTGTGGGGTCCTGGCTaGAGAGATAGGAGGGTGTGG +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVALWGPG*RDRRVW
Trigger: CCACACCCTCCTATCTCTTCAGCCAGGACCCCACAG...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GCGGATCCCGTGACGGGGCTCAGTGAGGCCCTGCCAGGGACCAAGCAGCCCTTCCATCTCCTCAAACTCTaGGCGGGGCCGGAAGAGAGG +
Preference number: 4 (lower is better)
Translates to: ADPVTGLSEALPGTKQPFHLLKL*AGPEER
Trigger: CCTCTCTTCCGGCCCCGCTCAGAGTTTGAGGAGATG...GAAGGGCTGCTTGGTCCCTGGCAGGGCCTCACTGAGCCCCGTCACGGGATCCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGCAGGCGCTCGTAGGTaGCGCACAGGAAGCGGATGT +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALAGARR*RTGSGC
Trigger: ACATCCGCTTCCTGTGCGTCACCTACGAGCGCCTGC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCGCCAGAGCCGCAGCCTaGAGACAGGCTGCCATCTTT +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSARAAA*RQAAIF
Trigger: AAAGATGGCAGCCTGTCTGCAGGCTGCGGCTCTGGC...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGGGGACCAGGAGGGGTaGCTGGCTTCTCCTTGGCTG +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGGDQEG*LASPWL
Trigger: CAGCCAAGGAGAAGCCAGGCACCCCTCCTGGTCCCC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
67% GC, longest homopolymer 8 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAGACCACCCAGCTCCATaGTGTTGCTGTCAGGGGGCG +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGDHPAP*CCCQGA
Trigger: CGCCCCCTGACAGCAACAGCATGGAGCTGGGTGGTC...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTGTGACTTGGCCAGACTaGCACAGAGGCCTGGGGTAC +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAVTWPD*HRGLGY
Trigger: GTACCCCAGGCCTCTGTGGCAGTCTGGCCAAGTCAC...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGTCAGGGACAGGCCACTaGTGCTCCCTGACAGTGGGG +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALSGTGH*CSLTVG
Trigger: CCCCACTGTCAGGGAGCAGCAGTGGCCTGTCCCTGA...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCTGCCTGGCTTCTCCTTaGCTGGAGGCTCAGCGGGTG +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSCLASP*LEAQRV
Trigger: CACCCGCTGAGCCTCCAGCCAAGGAGAAGCCAGGCA...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGACCAGGAGGGGTGCCTaGCTTCTCCTTGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALTRRGA*LLLGWR
Trigger: CCTCCAGCCAAGGAGAAGCCAGGCACCCCTCCTGGT...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGCGGAGGGGTCAAACTTaGGCAGGGGCGGCCAATGCT +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALRRGQT*AGAANA
Trigger: AGCATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCG...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGAGACCCCATCCACCGTaGCCTTGTGCGGGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALRPHPP*PCAGPP
Trigger: AGGAGGACCCGCACAAGGCCACGGTGGATGGGGTCT...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCAGACCCCATCCACCGTaGCCTTGTGCGGGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSRPHPP*PCAGPP
Trigger: AGGAGGACCCGCACAAGGCCACGGTGGATGGGGTCT...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGCTCTTCTGGGGGCTCTaGGCTCCCTTCCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALLFWGL*APFQLP
Trigger: CGGAAGCTGGAAGGGAGCCCAGAGCCCCCAGAAGAG...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAACTGCCACAGAGGCCTaGGGTACGTGGAGGGTGGTC +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGTATEA*GTWRVV
Trigger: GACCACCCTCCACGTACCCCAGGCCTCTGTGGCAGT...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCAGTTTCCAGGAGCACTaGGGAGGCCAGGGGGCCGGT +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPSFQEH*GGQGAG
Trigger: ACCGGCCCCCTGGCCTCCCCAGTGCTCCTGGAAACT...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGCTGGGGGTGGGGGAGGCAGCTGGGGAGGTaGCCGAGGCTGGGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: GPTDQEYCIPFLGCWGWGRQLGR*PRLGPQ
Trigger: CTGAGGGCCCAGCCTCGGCCACCTCCCCAGCTGCCT...CCCCCACCCCCAGCATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTGGCTGAGGAGAGGCTaGTGGAGGGATGGTAGACCC +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAWLRRG*WRDGRP
Trigger: GGGTCTACCATCCCTCCACCAGCCTCTCCTCAGCCA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGTACCCTGGGTGTCCATaGGGGGCTCGTCTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALYPGCP*GARLCW
Trigger: CCAGCACAGACGAGCCCCCCATGGACACCCAGGGTA...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
3UTR CAA 72 bp GGGTCTGCTCGCTGCATCGACGGGCAGGTAGGGGCCTaGCGGGTCTGTAGTGTTCTGAGGTTGAGGCCGCGG +
Preference number: 4 (lower is better)
Translates to: GSARCIDGQVGA*RVCSVLRLRPR
Trigger: CCGCGGCCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCGAGCAGACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCTGGACATGGCCAGGCTaGAATGCTGCCCATCGTAGC +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSWTWPG*NAAHRS
Trigger: GCTACGATGGGCAGCATTTCAGCCTGGCCATGTCCA...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGCCCCCTGGCCTGTCATaGGCCGGCTTAACATCTGTG +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALPPGLS*AGLTSV
Trigger: CACAGATGTTAAGCCGGCTCATGACAGGCCAGGGGG...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAGGGGGTCCTGTCTCCTaGCAGGTCCAAATCCACCTC +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGGGPVS*QVQIHL
Trigger: GAGGTGGATTTGGACCTGGCAGGAGACAGGACCCCC...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACTGTCCTCGTCCTTGTaGTCACCGGACTTCACGGGG +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGLSSSL*SPDFTG
Trigger: CCCCGTGAAGTCCGGTGAGCACAAGGACGAGGACAG...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCTCCAGCTCAGGAGCCTaGATCTCAGGGACTTCGTCC +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSSSSGA*ISGTSS
Trigger: GGACGAAGTCCCTGAGATGCAGGCTCCTGAGCTGGA...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGTGACTTGGCCAGACTaGCACAGAGGCCTGGGGTAC +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALVTWPD*HRGLGY
Trigger: GTACCCCAGGCCTCTGTGGCAGTCTGGCCAAGTCAC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTGTCCAGGCGGCAGCTaGAGTAAGCTGTGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVACPGGS*SKLCLG
Trigger: CCCAAGACACAGCTTACTCCAGCTGCCGCCTGGACA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCCTTCTCTGGCCCGGCTaGAGAGGACTCCAGAGTAGG +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSLLWPG*RGLQSR
Trigger: CCTACTCTGGAGTCCTCTCCAGCCGGGCCAGAGAAG...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCGAGTCCAGGCTGTCATaGGGCTTCTCTGGCCCGGCT +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPESRLS*GFSGPA
Trigger: AGCCGGGCCAGAGAAGCCCCATGACAGCCTGGACTC...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGCAGAGGTGGGGGCATaGGGAAGCCAGGTTGTGGTG +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGAEVGA*GSQVVV
Trigger: CACCACAACCTGGCTTCCCCATGCCCCCACCTCTGC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCGCAGAGGTGGGGGCATaGGGAAGCCAGGTTGTGGTG +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPAEVGA*GSQVVV
Trigger: CACCACAACCTGGCTTCCCCATGCCCCCACCTCTGC...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCTGGCCACCCAGCACATaGCTCATGTCCACCTGCATC +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSWPPST*LMSTCI
Trigger: GATGCAGGTGGACATGAGCCATGTGCTGGGTGGCCA...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAAGCGGCCATGAAAGGTaGGTAGGGACAAGCCCCCTG +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGSGHER*VGTSPL
Trigger: CAGGGGGCTTGTCCCTACCCACCTTTCATGGCCGCT...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGAGACCCCATCCACCGTaGCCTTGTGCGGGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGRPHPP*PCAGPP
Trigger: AGGAGGACCCGCACAAGGCCACGGTGGATGGGGTCT...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCGGATCCCGTGACGGGGCTCAGTGAGGCCCTGCCAGGGACCAAGCAGCCCTTCGGGTCAGTGAGGCCTTaGCCATCCGCTCCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: ADPVTGLSEALPGTKQPFGSVRP*PSAPSC
Trigger: ACAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCC...GAAGGGCTGCTTGGTCCCTGGCAGGGCCTCACTGAGCCCCGTCACGGGATCCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCGCTTCCGAGCACCCATaGGCAATGGAGGCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSASEHP*AMEAPP
Trigger: TGGAGGAGCCTCCATTGCCCATGGGTGCTCGGAAGC...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCTCTTCTGGGGGCTCTaGGCTCCCTTCCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPLFWGL*APFQLP
Trigger: CGGAAGCTGGAAGGGAGCCCAGAGCCCCCAGAAGAG...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGATTGTGTGTTGGGGCCTaGCTCTTCTGGGGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGLCVGA*LFWGLW
Trigger: CCAGAGCCCCCAGAAGAGCCAGGCCCCAACACACAA...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGCTCAGGCGGTGGGCTaGGTGGCCGGAGCAGTCGAG +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRAQAVG*VAGAVE
Trigger: CTCGACTGCTCCGGCCACCCAGCCCACCGCCTGAGC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGGCCGGAAGAGAGGCTaGGGTGGTGAGGGTTCAGGT +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGGRKRG*GGEGSG
Trigger: ACCTGAACCCTCACCACCCCAGCCTCTCTTCCGGCC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
66% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCGGATCCCGTGACGGGGCTCAGTGAGGCCCTGCCAGGGACCAAGCAGCCCTTCCTGAGGAGAGGCTGGTaGAGGGATGGTAGACCCAGA +
Preference number: 4 (lower is better)
Translates to: ADPVTGLSEALPGTKQPFLRRGW*RDGRPR
Trigger: TCTGGGTCTACCATCCCTCCACCAGCCTCTCCTCAG...GAAGGGCTGCTTGGTCCCTGGCAGGGCCTCACTGAGCCCCGTCACGGGATCCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGTGGCTGAGGAGAGGCTaGTGGAGGGATGGTAGACCC +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALWLRRG*WRDGRP
Trigger: GGGTCTACCATCCCTCCACCAGCCTCTCCTCAGCCA...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCTACCCTGGGTGTCCATaGGGGGCTCGTCTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPYPGCP*GARLCW
Trigger: CCAGCACAGACGAGCCCCCCATGGACACCCAGGGTA...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGTTGTAGGCATCTGTaGACTTGCTCTCGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALGCRHL*TCSRAA
Trigger: GGCGGCACGAGAGCAAGTTCACAGATGCCTACAACC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCGCAGTGGTGTGGGACTaGTGTCCTCTAGACCTGTGC +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSAVVWD*CPLDLC
Trigger: GCACAGGTCTAGAGGACATCAGTCCCACACCACTGC...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGGCAGTCAGCGCTGGTaGTGGGGGCCGAGGGCATCT +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRGSQRW*WGPRAS
Trigger: AGATGCCCTCGGCCCCCATCACCAGCGCTGACTGCC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGCTCAGCTGGGGCCTTTaGGGTGGTGATGCTCTCTGT +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALLSWGL*GGDALC
Trigger: ACAGAGAGCATCACCACCTCAAAGGCCCCAGCTGAG...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCATCTCCTCAAACTCTaGGCGGGGCCGGAAGAGAGG +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPHLLKL*AGPEER
Trigger: CCTCTCTTCCGGCCCCGCTCAGAGTTTGAGGAGATG...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCTGGCACGGCTGCTGTTaGGGTATCTCAGCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSWHGCC*GISACP
Trigger: AGGACAAGCTGAGATACCTCAACAGCAGCCGTGCCA...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTGGCACGGCTGCTGTTaGGGTATCTCAGCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAWHGCC*GISACP
Trigger: AGGACAAGCTGAGATACCTCAACAGCAGCCGTGCCA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTTGGCAAATGTCACCTaGTTTGGAGGCACAGGGCCC +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVALANVT*FGGTGP
Trigger: GGGCCCTGTGCCTCCAAAGCAGGTGACATTTGCCAA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTATGACAGAAGTGCTGTaGAGGTGTTGGACGGCCTCC +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAMTEVL*RCWTAS
Trigger: GGAGGCCGTCCAACACCTGCACAGCACTTCTGTCAT...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCGTGAACTTGCTCTCGTaGCGCCTCGCCTTGAATGTG +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSVNLLS*RLALNV
Trigger: CACATTCAAGGCGAGGCGGCACGAGAGCAAGTTCAC...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTAGGAGGAGATGGGGCTaGCTTCCATCTGTATCTCGG +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVARRRWG*LPSVSR
Trigger: CCGAGATACAGATGGAAGGCAGCCCCATCTCCTCCT...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTGGCAAGTTGACAAACTaGAGTCCAGCAGAAGCGGCG +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAGKLTN*SPAEAA
Trigger: CGCCGCTTCTGCTGGACTGCAGTTTGTCAACTTGCC...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCCGTGGCTGCAGCCATTaGAGTCTCTTTCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSRGCSH*SLFLLL
Trigger: GAGGAGGAGAAAGAGACTGCAATGGCTGCAGCCACG...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGCCCAGAGGCACTTCTaGCCTGTCCTGCTCAAAGTC +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALAQRHF*PVLLKV
Trigger: GACTTTGAGCAGGACAGGGCAGAAGTGCCTCTGGGC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCGGCGGCAATGGCGGCTaGAAGGGCAAGGAGAGCATA +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPGGNGG*KGKESI
Trigger: TATGCTCTCCTTGCCCTTGCAGCCGCCATTGCCGCC...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAGACGGCTGGAGTAGCTaGAATCCTGGGAGAAAGGGG +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGDGWSS*NPGRKG
Trigger: CCCCTTTCTCCCAGGATTCCAGCTACTCCAGCCGTC...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGACGGCTGGAGTAGCTaGAATCCTGGGAGAAAGGGG +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALDGWSS*NPGRKG
Trigger: CCCCTTTCTCCCAGGATTCCAGCTACTCCAGCCGTC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGTGTGGGCTGACGGCTaGAGTAGCTGGAATCCTGGG +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGVWADG*SSWNPG
Trigger: CCCAGGATTCCAGCTACTCCAGCCGTCAGCCCACAC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCTGGTATGTAGCCTGGTaGTGGCACGGAGGGGTCAAA +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSWYVAW*WHGGVK
Trigger: TTTGACCCCTCCGTGCCACCACCAGGCTACATACCA...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGAGGATATGCGGCTCCTaGGGCCTTCCTCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALRICGS*GLPPPL
Trigger: AAGAGGAGGAGGAAGGCCCCAGGAGCCGCATATCCT...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGAGCACCCATGGGCAATaGAGGCTCCTCCAGCTCAGG +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGSTHGQ*RLLQLR
Trigger: CCTGAGCTGGAGGAGCCTCCATTGCCCATGGGTGCT...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGCTTCCGAGCACCCATaGGCAATGGAGGCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGASEHP*AMEAPP
Trigger: TGGAGGAGCCTCCATTGCCCATGGGTGCTCGGAAGC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCCACCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGGCTCAGGCGGTGGGCTaGGTGGCCGGAGCAGTCGAG +
Preference number: 4 (lower is better)
Translates to: VPPGALHLGEDSGSQQSRAQAVG*VAGAVE
Trigger: CTCGACTGCTCCGGCCACCCAGCCCACCGCCTGAGC...CCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGCATCCAAGGACAGCATaGACGGTGGGGATCTCCGGG +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGHPRTA*TVGISG
Trigger: CCCGGAGATCCCCACCGTCCATGCTGTCCTTGGATG...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGACCTGGCGGATGTTCTaGCCCACGTACTCGATGACC +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALTWRMF*PTYSMT
Trigger: GGTCATCGAGTACGTGGGCCAGAACATCCGCCAGGT...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCACCTGGCGGATGTTCTaGCCCACGTACTCGATGACC +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSTWRMF*PTYSMT
Trigger: GGTCATCGAGTACGTGGGCCAGAACATCCGCCAGGT...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAACCTGGCGGATGTTCTaGCCCACGTACTCGATGACC +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGTWRMF*PTYSMT
Trigger: GGTCATCGAGTACGTGGGCCAGAACATCCGCCAGGT...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGGCAGGCGCTCGTAGGTaGCGCACAGGAAGCGGATGT +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWAGARR*RTGSGC
Trigger: ACATCCGCTTCCTGTGCGTCACCTACGAGCGCCTGC...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCTGGCACGGCTGCTGTTaGGGTATCTCAGCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSWHGCC*GISACP
Trigger: AGGACAAGCTGAGATACCTCAACAGCAGCCGTGCCA...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGGAAGGGCAGCTTGGTaGGTTGCTCCTTCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGGRAAW*VAPSAA
Trigger: TGCTGCTGAAGGAGCAACGCACCAAGCTGCCCTTCC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCCGTGGCTGCAGCCATTaGAGTCTCTTTCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSRGCSH*SLFLLL
Trigger: GAGGAGGAGAAAGAGACTGCAATGGCTGCAGCCACG...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGCCCAGAGGCACTTCTaGCCTGTCCTGCTCAAAGTC +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGAQRHF*PVLLKV
Trigger: GACTTTGAGCAGGACAGGGCAGAAGTGCCTCTGGGC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACTGGCACTGTCTCTGTaGTCTGTGACTTGGCCAGAC +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGLALSL*SVTWPD
Trigger: GTCTGGCCAAGTCACAGAGCACAGAGACAGTGCCAG...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCTTGTCCATAGGAGTTaGGTGTGTCCAGGCGGCAGC +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPLVHRS*VCPGGS
Trigger: GCTGCCGCCTGGACACACCCAACTCCTATGGACAAG...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGAGAGATAGGAGGGTGTaGGCTGACGGCTGGAGTAGC +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGRDRRV*ADGWSS
Trigger: GCTACTCCAGCCGTCAGCCCACACCCTCCTATCTCT...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGTCCCAAAGGCTGCTGTaGCGGTGGGCTCCTCAGGGG +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRSQRLL*RWAPQG
Trigger: CCCCTGAGGAGCCCACCGCCACAGCAGCCTTTGGGA...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGGAGTCCAGGCTGTCATaGGGCTTCTCTGGCCCGGCT +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWESRLS*GFSGPA
Trigger: AGCCGGGCCAGAGAAGCCCCATGACAGCCTGGACTC...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCAGAGTCAGGCAGTaGTGTGGGACTGATGTCCTC +
Preference number: 4 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSIRVRQ*CGTDVL
Trigger: GAGGACATCAGTCCCACACCACTGCCTGACTCTGAT...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCACTGTCACTGCAGGATaGGCTGGTGGTGGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPTVTAG*AGGGGG
Trigger: ACCACCACCACCACCAGCCCATCCTGCAGTGACAGT...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGGCATGCCACCCCACTaGCCACCCAGCACATGGCTC +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRGMPPH*PPSTWL
Trigger: GAGCCATGTGCTGGGTGGCCAGTGGGGTGGCATGCC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGCGGAGGGGTCAAACTTaGGCAGGGGCGGCCAATGCT +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWRRGQT*AGAANA
Trigger: AGCATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCG...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGAGGCCTGGGGTACGTaGAGGGTGGTCTTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLREAWGT*RVVFWG
Trigger: CCCCCAGAAGACCACCCTCCACGTACCCCAGGCCTC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGACTGCCACAGAGGCCTaGGGTACGTGGAGGGTGGTC +
Preference number: 4 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLTATEA*GTWRVV
Trigger: GACCACCCTCCACGTACCCCAGGCCTCTGTGGCAGT...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGCAGCAATTGGCTCCATaGCAAACAGGCCCCAGTCGT +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALQQLAP*QTGPSR
Trigger: ACGACTGGGGCCTGTTTGCCATGGAGCCAATTGCTG...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGACAGGCTGCCATCTTTaGGGCGCTTCAGAGCATCTG +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGTGCHL*GASEHL
Trigger: CAGATGCTCTGAAGCGCCTCAAAGATGGCAGCCTGT...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGCTATTGGGGGTGACTaGCGAGGAGCCAGAGCCGCA +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRAIGGD*RGARAA
Trigger: TGCGGCTCTGGCTCCTCGTCAGTCACCCCCAATAGC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGCCCCCTGGCCTGTCATaGGCCGGCTTAACATCTGTG +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWPPGLS*AGLTSV
Trigger: CACAGATGTTAAGCCGGCTCATGACAGGCCAGGGGG...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAACTTGGTGGCGTCGATaGTGGTGTCATGGTCTACTC +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGTWWRR*WCHGLL
Trigger: GAGTAGACCATGACACCATCATCGACGCCACCAAGT...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCCGGTACAGTTTATGGTaGCCCTTTTTCAGAGCCGGG +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSRYSLW*PFFRAG
Trigger: CCCGGCTCTGAAAAAGGGGCACCATAAACTGTACCG...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGGCCAGAGCCGCAGCCTaGAGACAGGCTGCCATCTTT +
Preference number: 4 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLARAAA*RQAAIF
Trigger: AAAGATGGCAGCCTGTCTGCAGGCTGCGGCTCTGGC...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGGCCAGAGCCGCAGCCTaGAGACAGGCTGCCATCTTT +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWARAAA*RQAAIF
Trigger: AAAGATGGCAGCCTGTCTGCAGGCTGCGGCTCTGGC...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGCTGTCCTCGTCCTTGTaGTCACCGGACTTCACGGGG +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWLSSSL*SPDFTG
Trigger: CCCCGTGAAGTCCGGTGAGCACAAGGACGAGGACAG...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGTGTCCTCCTCGTCGATaGCACCGTTCCAGATGTCGT +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGCPPRR*HRSRCR
Trigger: ACGACATCTGGAACGGTGGCATCGACGAGGAGGACA...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAAAATGTCACCTGCTTTaGAGGCACAGGGCCCACGTA +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGKCHLL*RHRAHV
Trigger: TACGTGGGCCCTGTGCCTCCAAAGCAGGTGACATTT...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGCTTCTCTGGCCCGGCTaGAGAGGACTCCAGAGTAGG +
Preference number: 4 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLLLWPG*RGLQSR
Trigger: CCTACTCTGGAGTCCTCTCCAGCCGGGCCAGAGAAG...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCGAAGGAAGGGCAGCTTaGTGCGTTGCTCCTTCAGCA +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPEGRAA*CVAPSA
Trigger: TGCTGAAGGAGCAACGCACCAAGCTGCCCTTCCTTC...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCCACCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGGGCATGCCACCCCACTaGCCACCCAGCACATGGCTC +
Preference number: 4 (lower is better)
Translates to: VPPGALHLGEDSGSQQSRGMPPH*PPSTWL
Trigger: GAGCCATGTGCTGGGTGGCCAGTGGGGTGGCATGCC...CCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCTCGGTCTTTGGGCTTTaGCCTGTCCTCGTCCTTGTG +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPSVFGL*PVLVLV
Trigger: CACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGA...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCAGGCGATTCGGTCTTTaGGCTTTGGCCTGTCCTCGT +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPRRFGL*ALACPR
Trigger: ACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCT...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGCACCCATGGGCAATaGAGGCTCCTCCAGCTCAGG +
Preference number: 4 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLSTHGQ*RLLQLR
Trigger: CCTGAGCTGGAGGAGCCTCCATTGCCCATGGGTGCT...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAAGGCGGTGGGCTGGGTaGCCGGAGCAGTCGAGGGGG +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIRRWAG*PEQSRG
Trigger: CCCCCTCGACTGCTCCGGCCACCCAGCCCACCGCCT...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGCATCCAAGGACAGCATaGACGGTGGGGATCTCCGGG +
Preference number: 4 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLHPRTA*TVGISG
Trigger: CCCGGAGATCCCCACCGTCCATGCTGTCCTTGGATG...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGAGGGTCATGTGCGCTaGGGAAAATGGGGGCCGGTG +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLREGHVR*GKWGPV
Trigger: CACCGGCCCCCATTTTCCCCAGCGCACATGACCCTC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCAGCAATTGGCTCCATaGCAAACAGGCCCCAGTCGT +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPQQLAP*QTGPSR
Trigger: ACGACTGGGGCCTGTTTGCCATGGAGCCAATTGCTG...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCTCGTCAGCAGCAATTaGCTCCATGGCAAACAGGCC +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPLVSSN*LHGKQA
Trigger: GGCCTGTTTGCCATGGAGCCAATTGCTGCTGACGAG...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GTCCCACCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGCACCGCTATTGGGGGTaGCTGACGAGGAGCCAGAGC +
Preference number: 4 (lower is better)
Translates to: VPPGALHLGEDSGSQQSRHRYWG*LTRSQS
Trigger: GCTCTGGCTCCTCGTCAGTCACCCCCAATAGCGGTG...CCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGGGTTGTAGGCATCTGTaGACTTGCTCTCGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLGCRHL*TCSRAA
Trigger: GGCGGCACGAGAGCAAGTTCACAGATGCCTACAACC...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGGGCGGGGGCGCAGGTaGCCTCCGGAACTCCCCACT +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIGRGRR*PPELPT
Trigger: AGTGGGGAGTTCCGGAGGGCACCTGCGCCCCCGCCC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGCATTCAGCCAGTCCATaGCATTGTCCTGCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGHSASP*HCPAAA
Trigger: TGCTGCAGCAGGACAATGGCATGGACTGGCTGAATG...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCATTCAGCCAGTCCATaGCATTGTCCTGCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPHSASP*HCPAAA
Trigger: TGCTGCAGCAGGACAATGGCATGGACTGGCTGAATG...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GCGGATCCCGTGACGGGGCTCAGTGAGGCCCTGCCAGGGACCAAGCAGCCCTTCGTGGTTAATGAAGCGTaGAAAGTTGCCGCACTTGGT +
Preference number: 4 (lower is better)
Translates to: ADPVTGLSEALPGTKQPFVVNEA*KVAALG
Trigger: ACCAAGTGCGGCAACTTTGCACGCTTCATTAACCAC...GAAGGGCTGCTTGGTCCCTGGCAGGGCCTCACTGAGCCCCGTCACGGGATCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGAAATGTCACCTGCTTTaGAGGCACAGGGCCCACGTA +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGKCHLL*RHRAHV
Trigger: TACGTGGGCCCTGTGCCTCCAAAGCAGGTGACATTT...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGCTTGTCCATAGGAGTTaGGTGTGTCCAGGCGGCAGC +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWLVHRS*VCPGGS
Trigger: GCTGCCGCCTGGACACACCCAACTCCTATGGACAAG...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGCAGGCGAGGCGTGATTaGGGTGCCTTGTCCATAGGA +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWQARRD*GALSIG
Trigger: TCCTATGGACAAGGCACCCCAATCACGCCTCGCCTG...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGCTGGGGGTGGGGGAGAGATAGGAGGGTGTaGGCTGACGGCTGGAGTAGC +
Preference number: 4 (lower is better)
Translates to: GPTDQEYCIPFLGCWGWGRDRRV*ADGWSS
Trigger: GCTACTCCAGCCGTCAGCCCACACCCTCCTATCTCT...CCCCCACCCCCAGCATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGTGGCCACCCAGCACATaGCTCATGTCCACCTGCATC +
Preference number: 4 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLWPPST*LMSTCI
Trigger: GATGCAGGTGGACATGAGCCATGTGCTGGGTGGCCA...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGAGCGGCCATGAAAGGTaGGTAGGGACAAGCCCCCTG +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRSGHER*VGTSPL
Trigger: CAGGGGGCTTGTCCCTACCCACCTTTCATGGCCGCT...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGCGGGTCCTCCTGACGTaGTATGTAGCCTGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRRVLLT*YVAWWW
Trigger: CCACCACCAGGCTACATACCACGTCAGGAGGACCCG...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGATATGCGGCTCCTaGGGCCTTCCTCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLRICGS*GLPPPL
Trigger: AAGAGGAGGAGGAAGGCCCCAGGAGCCGCATATCCT...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGAGGCGGTGGGCTGGGTaGCCGGAGCAGTCGAGGGGG +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPARRWAG*PEQSRG
Trigger: CCCCCTCGACTGCTCCGGCCACCCAGCCCACCGCCT...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGAGAGGCCTGGGGTACGTaGAGGGTGGTCTTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: PGALHLGEDSGSQQSRSREAWGT*RVVFWG
Trigger: CCCCCAGAAGACCACCCTCCACGTACCCCAGGCCTC...TCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGCTGAGGAGAGGCTGGTaGAGGGATGGTAGACCCAGA +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWLRRGW*RDGRPR
Trigger: TCTGGGTCTACCATCCCTCCACCAGCCTCTCCTCAG...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGATGTCCTTCTTGTCGATaGTGTAGAAGCCCTCGCTTC +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGCPSCR*CRSPRF
Trigger: GAAGCGAGGGCTTCTACACCATCGACAAGAAGGACA...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGACCTCCTTGGCGCCCCTaGCTGTGGCAAAGACCACCT +
Preference number: 4 (lower is better)
Translates to: PGALHLGEDSGSQQSRSRPPWRP*LWQRPP
Trigger: AGGTGGTCTTTGCCACAGTCAGGGGCGCCAAGGAGG...TCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGGTTGTAGGCATCTGTaGACTTGCTCTCGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRGCRHL*TCSRAA
Trigger: GGCGGCACGAGAGCAAGTTCACAGATGCCTACAACC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGGGCTCCAGCCACCGCTaGGTTGTGGACATAATGATG +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWGSSHR*VVDIMM
Trigger: CATCATTATGTCCACAACTCAGCGGTGGCTGGAGCC...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGAACAGGCCCCAGTCGTaGATGTGGCTCTTACAGAAT +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGNRPQS*MWLLQN
Trigger: ATTCTGTAAGAGCCACATTCACGACTGGGGCCTGTT...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGTTGGCAAATGTCACCTaGTTTGGAGGCACAGGGCCC +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWLANVT*FGGTGP
Trigger: GGGCCCTGTGCCTCCAAAGCAGGTGACATTTGCCAA...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCGGGCGGGGGCGCAGGTaGCCTCCGGAACTCCCCACT +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSGRGRR*PPELPT
Trigger: AGTGGGGAGTTCCGGAGGGCACCTGCGCCCCCGCCC...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TCAGTAGGGAAGATGAAGAAAGCCCCCAGCGAGCCGGCCTGCCCGAGGAACTCAGGAAGGGCAGCTTGGTaGGTTGCTCCTTCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: SVGKMKKAPSEPACPRNSGRAAW*VAPSAA
Trigger: TGCTGCTGAAGGAGCAACGCACCAAGCTGCCCTTCC...TGAGTTCCTCGGGCAGGCCGGCTCGCTGGGGGCTTTCTTCATCTTCCCTACTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR GCA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGGGCAAGTTGACAAACTaGAGTCCAGCAGAAGCGGCG +
Preference number: 4 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLGKLTN*SPAEAA
Trigger: CGCCGCTTCTGCTGGACTGCAGTTTGTCAACTTGCC...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGCGTGGCTGCAGCCATTaGAGTCTCTTTCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWRGCSH*SLFLLL
Trigger: GAGGAGGAGAAAGAGACTGCAATGGCTGCAGCCACG...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGTGTCCTCCTCGTCGATaGCACCGTTCCAGATGTCGT +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWCPPRR*HRSRCR
Trigger: ACGACATCTGGAACGGTGGCATCGACGAGGAGGACA...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGTGGTTAATGAAGCGTaGAAAGTTGCCGCACTTGGT +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALVVNEA*KVAALG
Trigger: ACCAAGTGCGGCAACTTTGCACGCTTCATTAACCAC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTGCCCAGGTGTTTCTTaGTCTTCGGGTTATACAAGA +
Preference number: 4 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVACPGVS*SSGYTR
Trigger: TCTTGTATAACCCGAAGACCAAGAAACACCTGGGCA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGTGTCCAGCTCCACGTaGATAATGTTGCCCATGACA +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGVSSST*IMLPMT
Trigger: TGTCATGGGCAACATTATCCACGTGGAGCTGGACAC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TCAGTAGGGAAGATGAAGAAAGCCCCCAGCGAGCCGGCCTGCCCGAGGAACTCACTTGTCCATAGGAGTTaGGTGTGTCCAGGCGGCAGC +
Preference number: 4 (lower is better)
Translates to: SVGKMKKAPSEPACPRNSLVHRS*VCPGGS
Trigger: GCTGCCGCCTGGACACACCCAACTCCTATGGACAAG...TGAGTTCCTCGGGCAGGCCGGCTCGCTGGGGGCTTTCTTCATCTTCCCTACTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGAGAGATAGGAGGGTGTaGGCTGACGGCTGGAGTAGC +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRRDRRV*ADGWSS
Trigger: GCTACTCCAGCCGTCAGCCCACACCCTCCTATCTCT...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGAGGCTGCTGTGGCGGTaGGCTCCTCAGGGGGTGGCG +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPARLLWR*APQGVA
Trigger: CGCCACCCCCTGAGGAGCCCACCGCCACAGCAGCCT...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGATGGCTTCTCCTTGGCTaGAGGCTCAGCGGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: PGALHLGEDSGSQQSRSRWLLLG*RLSGWQ
Trigger: CTGCCACCCGCTGAGCCTCCAGCCAAGGAGAAGCCA...TCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGCTGGGGGTGGGGGGAAGGAAGGGCAGCTTaGTGCGTTGCTCCTTCAGCA +
Preference number: 4 (lower is better)
Translates to: GPTDQEYCIPFLGCWGWGEGRAA*CVAPSA
Trigger: TGCTGAAGGAGCAACGCACCAAGCTGCCCTTCCTTC...CCCCCACCCCCAGCATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGTGGTATGTAGCCTGGTaGTGGCACGGAGGGGTCAAA +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWWYVAW*WHGGVK
Trigger: TTTGACCCCTCCGTGCCACCACCAGGCTACATACCA...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGCTGGGGGTGGGGGTGGTATGTAGCCTGGTaGTGGCACGGAGGGGTCAAA +
Preference number: 4 (lower is better)
Translates to: GPTDQEYCIPFLGCWGWGWYVAW*WHGGVK
Trigger: TTTGACCCCTCCGTGCCACCACCAGGCTACATACCA...CCCCCACCCCCAGCATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGAGGCGATTCGGTCTTTaGGCTTTGGCCTGTCCTCGT +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWRRFGL*ALACPR
Trigger: ACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCT...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCCACCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGGCTTCCGAGCACCCATaGGCAATGGAGGCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: VPPGALHLGEDSGSQQSRASEHP*AMEAPP
Trigger: TGGAGGAGCCTCCATTGCCCATGGGTGCTCGGAAGC...CCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGGGTTGTCCAGCTCCTTaGAGGGTAGCTTGGTGGATT +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWGCPAP*RVAWWI
Trigger: AATCCACCAAGCTACCCTTCAAGGAGCTGGACAACC...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGATGACAGAAGTGCTGTaGAGGTGTTGGACGGCCTCC +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRMTEVL*RCWTAS
Trigger: GGAGGCCGTCCAACACCTGCACAGCACTTCTGTCAT...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGCGCCCCGCAGTCCAATaGCCAGGCCTAGGCCCTCGT +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPARPAVQ*PGLGPR
Trigger: ACGAGGGCCTAGGCCTGGGCATTGGACTGCGGGGCG...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TCAGTAGGGAAGATGAAGAAAGCCCCCAGCGAGCCGGCCTGCCCGAGGAACTCACTGGCACTGTCTCTGTaGTCTGTGACTTGGCCAGAC +
Preference number: 4 (lower is better)
Translates to: SVGKMKKAPSEPACPRNSLALSL*SVTWPD
Trigger: GTCTGGCCAAGTCACAGAGCACAGAGACAGTGCCAG...TGAGTTCCTCGGGCAGGCCGGCTCGCTGGGGGCTTTCTTCATCTTCCCTACTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR GCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAGGGACAGGCCACTGCTaGTCCCTGACAGTGGGGGCT +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIGTGHC*SLTVGA
Trigger: AGCCCCCACTGTCAGGGAGCAGCAGTGGCCTGTCCC...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGAAATGTCACCTGCTTTaGAGGCACAGGGCCCACGTA +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWKCHLL*RHRAHV
Trigger: TACGTGGGCCCTGTGCCTCCAAAGCAGGTGACATTT...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCCACCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGCAGGCGAGGCGTGATTaGGGTGCCTTGTCCATAGGA +
Preference number: 4 (lower is better)
Translates to: VPPGALHLGEDSGSQQSRQARRD*GALSIG
Trigger: TCCTATGGACAAGGCACCCCAATCACGCCTCGCCTG...CCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTCACAGCCCCGGCCCCTaGGGTCACCACCATGGGCTT +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIHSPGP*GHHHGL
Trigger: AAGCCCATGGTGGTGACCCCAGGGGCCGGGGCTGTG...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGGGGCAGGGGCAGGTTTaGAGCCAGCACGTTGGGGGC +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAGQGQV*SQHVGG
Trigger: GCCCCCAACGTGCTGGCTCCAAACCTGCCCCTGCCC...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGTATGTAGCCTGGTGGTaGCACGGAGGGGTCAAACTT +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWYVAWW*HGGVKL
Trigger: AAGTTTGACCCCTCCGTGCCACCACCAGGCTACATA...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGACTCGGACTCGGAACTaGATTCAAACTCAGAAGATC +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALTRTRN*IQTQKI
Trigger: GATCTTCTGAGTTTGAATCCAGTTCCGAGTCCGAGT...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGGGGGCCTGGCTCTTCTaGGGGCTCTGGGCTCCCTTC +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAGAWLF*GLWAPF
Trigger: GAAGGGAGCCCAGAGCCCCCAGAAGAGCCAGGCCCC...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATATGGAGGGTGGTCTTCTaGGGGAGGCTCCAGGGGGAC +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIWRVVF*GRLQGD
Trigger: GTCCCCCTGGAGCCTCCCCCAGAAGACCACCCTCCA...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAAGTTTCCAGGAGCACTaGGGAGGCCAGGGGGCCGGT +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRISFQEH*GGQGAG
Trigger: ACCGGCCCCCTGGCCTCCCCAGTGCTCCTGGAAACT...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGGCCGGTGGCTGGCCTaGCAGGAGGAGAAGGTCCCT +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIGRWLA*QEEKVP
Trigger: AGGGACCTTCTCCTCCTGCCAGGCCAGCCACCGGCC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTCTTCGTGCCGCTTCTTaGGTGGCCGCCGCCACGGTC +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNILRAAS*VAAATV
Trigger: GACCGTGGCGGCGGCCACCCAAGAAGCGGCACGAAG...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGATTTCGAAACTTGAGCTaGTTGAACTTGAGCAGGTCG +
Preference number: 4 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGFRNLS*LNLSRS
Trigger: CGACCTGCTCAAGTTCAACCAGCTCAAGTTTCGAAA...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGTTGGGATTGCAGCTGTaGTTAATGAAGCGTGCAAAG +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALLGLQL*LMKRAK
Trigger: CTTTGCACGCTTCATTAACCACAGCTGCAATCCCAA...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCTTGGGATTGCAGCTGTaGTTAATGAAGCGTGCAAAG +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSLGLQL*LMKRAK
Trigger: CTTTGCACGCTTCATTAACCACAGCTGCAATCCCAA...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGATATGGAGAGAAAGCTaGTTTGAATCCAGAAGCCGT +
Preference number: 4 (lower is better)
Translates to: RAKAAESGNTLPSAPTALIWRES*FESRSR
Trigger: ACGGCTTCTGGATTCAAATCAGCTTTCTCTCCATAT...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGGGCCTGGCTTCCTCTTaGTGGGGGTTGGGCAGGGAG +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAGLASS*WGLGRE
Trigger: CTCCCTGCCCAACCCCCATCAAGAGGAAGCCAGGCC...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGAACAGGCCCCAGTCGTaGATGTGGCTCTTACAGAAT +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWNRPQS*MWLLQN
Trigger: ATTCTGTAAGAGCCACATTCACGACTGGGGCCTGTT...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGACTTGGTGGCGTCGATaGTGGTGTCATGGTCTACTC +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRTWWRR*WCHGLL
Trigger: GAGTAGACCATGACACCATCATCGACGCCACCAAGT...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGCCTCCCCATACTTTTTaGACATGTCCCTTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGPPHTF*TCPLGS
Trigger: ACTTCCTAAGGGACATGTGCAAAAAGTATGGGGAGG...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGCTCGTAGAAGCGCATaGGAGTTTCCCCTTTGGTGT +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRARRSA*EFPLWC
Trigger: ACACCAAAGGGGAAACTCGCATGCGCTTCTACGAGC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGGGGACCAGGAGGGGTaGCTGGCTTCTCCTTGGCTG +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIGDQEG*LASPWL
Trigger: CAGCCAAGGAGAAGCCAGGCACCCCTCCTGGTCCCC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TCAGTAGGGAAGATGAAGAAAGCCCCCAGCGAGCCGGCCTGCCCGAGGAACTCATGGCTCATGTCCACCTaGATCACAGGAAACAGTCCC +
Preference number: 4 (lower is better)
Translates to: SVGKMKKAPSEPACPRNSWLMST*ITGNSP
Trigger: GGGACTGTTTCCTGTGATGCAGGTGGACATGAGCCA...TGAGTTCCTCGGGCAGGCCGGCTCGCTGGGGGCTTTCTTCATCTTCCCTACTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR GCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCGCCCCGCAGTCCAATaGCCAGGCCTAGGCCCTCGT +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSRPAVQ*PGLGPR
Trigger: ACGAGGGCCTAGGCCTGGGCATTGGACTGCGGGGCG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGGGCATGCCACCCCACTaGCCACCCAGCACATGGCTC +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAGMPPH*PPSTWL
Trigger: GAGCCATGTGCTGGGTGGCCAGTGGGGTGGCATGCC...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTTGGAGGGTGGTCTTCTaGGGGAGGCTCCAGGGGGAC +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIWRVVF*GRLQGD
Trigger: GTCCCCCTGGAGCCTCCCCCAGAAGACCACCCTCCA...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAGAGGGTCATGTGCGCTaGGGAAAATGGGGGCCGGTG +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIEGHVR*GKWGPV
Trigger: CACCGGCCCCCATTTTCCCCAGCGCACATGACCCTC...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TCAGTAGGGAAGATGAAGAAAGCCCCCAGCGAGCCGGCCTGCCCGAGGAACTCACCCGTTTCTTTTTCTTaGCTGAGGAGAGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: SVGKMKKAPSEPACPRNSPVSFS*LRRGWW
Trigger: CCACCAGCCTCTCCTCAGCCAAGAAAAAGAAACGGG...TGAGTTCCTCGGGCAGGCCGGCTCGCTGGGGGCTTTCTTCATCTTCCCTACTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGTGTCCTTCTTGTCGATaGTGTAGAAGCCCTCGCTTC +
Preference number: 4 (lower is better)
Translates to: GNKYALASWVGASSRVTWCPSCR*CRSPRF
Trigger: GAAGCGAGGGCTTCTACACCATCGACAAGAAGGACA...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGTTTAAAGGTGCGCACCATCACACCTGGCCTCAGCCCACCTCTTGGACACCTTACCTGGCGGATGTTCTaGCCCACGTACTCGATGACC +
Preference number: 4 (lower is better)
Translates to: GLKVRTITPGLSPPLGHLTWRMF*PTYSMT
Trigger: GGTCATCGAGTACGTGGGCCAGAACATCCGCCAGGT...AAGGTGTCCAAGAGGTGGGCTGAGGCCAGGTGTGATGGTGCGCACCTTTAAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
CDS-3UTR TCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGCTATTGGGGGTGACTaGCGAGGAGCCAGAGCCGCA +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIAIGGD*RGARAA
Trigger: TGCGGCTCTGGCTCCTCGTCAGTCACCCCCAATAGC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCGGCTCTTACAGAATTTaGGCTTCTTCTTTCGAAACT +
Preference number: 4 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSGSYRI*ASSFET
Trigger: AGTTTCGAAAGAAGAAGCTCAAATTCTGTAAGAGCC...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp AAAGGTGCGCACCATCACACCTGGCCTCAGCCCACCTCTTGGACACCTTCCGTCAACAGGCCCCAGTCGTaGATGTGGCTCTTACAGAAT +
Preference number: 4 (lower is better)
Translates to: KGAHHHTWPQPTSWTPSVNRPQS*MWLLQN
Trigger: ATTCTGTAAGAGCCACATTCACGACTGGGGCCTGTT...GACGGAAGGTGTCCAAGAGGTGGGCTGAGGCCAGGTGTGATGGTGCGCACCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
CDS-3UTR GCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGACCACCCAGCTCCATaGTGTTGCTGTCAGGGGGCG +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIDHPAP*CCCQGA
Trigger: CGCCCCCTGACAGCAACAGCATGGAGCTGGGTGGTC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCCAGGCCCTCACCCTTaGCCCACGACTCCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSPGPHP*PTTPAD
Trigger: GTCTGCTGGAGTCGTGGGGCAAGGGTGAGGGCCTGG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGTGTCCAGCTCCACGTaGATAATGTTGCCCATGACA +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRVSSST*IMLPMT
Trigger: TGTCATGGGCAACATTATCCACGTGGAGCTGGACAC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAGTGTGGGCTGACGGCTaGAGTAGCTGGAATCCTGGG +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIVWADG*SSWNPG
Trigger: CCCAGGATTCCAGCTACTCCAGCCGTCAGCCCACAC...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCTCCCAAAGGCTGCTGTaGCGGTGGGCTCCTCAGGGG +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSSQRLL*RWAPQG
Trigger: CCCCTGAGGAGCCCACCGCCACAGCAGCCTTTGGGA...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGTGGCTTCTCCTTGGCTaGAGGCTCAGCGGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAWLLLG*RLSGWQ
Trigger: CTGCCACCCGCTGAGCCTCCAGCCAAGGAGAAGCCA...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCCACCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGATCAGAGTCAGGCAGTaGTGTGGGACTGATGTCCTC +
Preference number: 4 (lower is better)
Translates to: VPPGALHLGEDSGSQQSRIRVRQ*CGTDVL
Trigger: GAGGACATCAGTCCCACACCACTGCCTGACTCTGAT...CCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCAGACCCATAGGGTCTaGGGGGCCTGGCTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSQTHRV*GAWLRW
Trigger: CCACCTGAGCCAGGCCCCCCAGACCCTATGGGTCTG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGAGGGTCATGTGCGCTaGGGAAAATGGGGGCCGGTG +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIEGHVR*GKWGPV
Trigger: CACCGGCCCCCATTTTCCCCAGCGCACATGACCCTC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGTACCCTGGGTGTCCATaGGGGGCTCGTCTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAYPGCP*GARLCW
Trigger: CCAGCACAGACGAGCCCCCCATGGACACCCAGGGTA...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCGCTATTGGGGGTGACTaGCGAGGAGCCAGAGCCGCA +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSAIGGD*RGARAA
Trigger: TGCGGCTCTGGCTCCTCGTCAGTCACCCCCAATAGC...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACTCAGCTGGGGCCTTTaGGGTGGTGATGCTCTCTGT +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRILSWGL*GGDALC
Trigger: ACAGAGAGCATCACCACCTCAAAGGCCCCAGCTGAG...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGCATCTCCTCAAACTCTaGGCGGGGCCGGAAGAGAGG +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAHLLKL*AGPEER
Trigger: CCTCTCTTCCGGCCCCGCTCAGAGTTTGAGGAGATG...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCGGCTCTTACAGAATTTaGGCTTCTTCTTTCGAAACT +
Preference number: 4 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPGSYRI*ASSFET
Trigger: AGTTTCGAAAGAAGAAGCTCAAATTCTGTAAGAGCC...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGACGGTACAGTTTATGGTaGCCCTTTTTCAGAGCCGGG +
Preference number: 4 (lower is better)
Translates to: PGALHLGEDSGSQQSRSRRYSLW*PFFRAG
Trigger: CCCGGCTCTGAAAAAGGGGCACCATAAACTGTACCG...TCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR GCA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGCCTCCCCATACTTTTTaGACATGTCCCTTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLPPHTF*TCPLGS
Trigger: ACTTCCTAAGGGACATGTGCAAAAAGTATGGGGAGG...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCGACCACCCAGCTCCATaGTGTTGCTGTCAGGGGGCG +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSDHPAP*CCCQGA
Trigger: CGCCCCCTGACAGCAACAGCATGGAGCTGGGTGGTC...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAGGAAGGGCAGCTTGGTaGGTTGCTCCTTCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIGRAAW*VAPSAA
Trigger: TGCTGCTGAAGGAGCAACGCACCAAGCTGCCCTTCC...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAATGAGGGTGAGGATATaGGGCTCCTGGGGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIMRVRI*GSWGLP
Trigger: AGGAAGGCCCCAGGAGCCGCATATCCTCACCCTCAT...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGGCGGCAATGGCGGCTaGAAGGGCAAGGAGAGCATA +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIGGNGG*KGKESI
Trigger: TATGCTCTCCTTGCCCTTGCAGCCGCCATTGCCGCC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGGTGACTTGGCCAGACTaGCACAGAGGCCTGGGGTAC +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAVTWPD*HRGLGY
Trigger: GTACCCCAGGCCTCTGTGGCAGTCTGGCCAAGTCAC...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGGGCTGCCAGGCACCTaGGGGGAGCTCAGGGACAGG +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPGLPGT*GELRDR
Trigger: CCTGTCCCTGAGCTCCCCGCAGGTGCCTGGCAGCCC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGTAGCGGCGGAAGGATaGGTGGGGGCGGGACACCCG +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPVAAEG*VGAGHP
Trigger: CGGGTGTCCCGCCCCCACCCATCCTTCCGCCGCTAC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGCGGGTCCTCCTGACGTaGTATGTAGCCTGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPARVLLT*YVAWWW
Trigger: CCACCACCAGGCTACATACCACGTCAGGAGGACCCG...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGAGCACCCATGGGCAATaGAGGCTCCTCCAGCTCAGG +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPASTHGQ*RLLQLR
Trigger: CCTGAGCTGGAGGAGCCTCCATTGCCCATGGGTGCT...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCTCTTCTGGGGGCTCTaGGCTCCCTTCCAGCTTCCG +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSLFWGL*APFQLP
Trigger: CGGAAGCTGGAAGGGAGCCCAGAGCCCCCAGAAGAG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGCTCAGGCGGTGGGCTaGGTGGCCGGAGCAGTCGAG +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPAQAVG*VAGAVE
Trigger: CTCGACTGCTCCGGCCACCCAGCCCACCGCCTGAGC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCAGGCAGCTGGGGAGGTaGCCGAGGCTGGGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPRQLGR*PRLGPQ
Trigger: CTGAGGGCCCAGCCTCGGCCACCTCCCCAGCTGCCT...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCTGTGGGGTCCTGGCTaGAGAGATAGGAGGGTGTGG +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSLWGPG*RDRRVW
Trigger: CCACACCCTCCTATCTCTTCAGCCAGGACCCCACAG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGGCAGTCAGCGCTGGTaGTGGGGGCCGAGGGCATCT +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPGSQRW*WGPRAS
Trigger: AGATGCCCTCGGCCCCCATCACCAGCGCTGACTGCC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCCCCCTGGCCTGTCATaGGCCGGCTTAACATCTGTG +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSPPGLS*AGLTSV
Trigger: CACAGATGTTAAGCCGGCTCATGACAGGCCAGGGGG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
54% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGGTCCCGCTCCCGCTCTaGCTCTTCATCTTCCTCATC +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAVPLPL*LFIFLI
Trigger: GATGAGGAAGATGAAGAGTCAGAGCGGGAGCGGGAC...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CTCCTCTCTCCCTCCCTGTCACCTGTGGGTCAAATGAAGCCTGGAAAGGAGACTACTTGGTGGCGTCGATaGTGGTGTCATGGTCTACTC +
Preference number: 4 (lower is better)
Translates to: LLSPSLSPVGQMKPGKETTWWRR*WCHGLL
Trigger: GAGTAGACCATGACACCATCATCGACGCCACCAAGT...AGTCTCCTTTCCAGGCTTCATTTGACCCACAGGTGACAGGGAGGGAGAGAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
CDS-3UTR GCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAAGGAGGAGATGGGGCTaGCTTCCATCTGTATCTCGG +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIRRRWG*LPSVSR
Trigger: CCGAGATACAGATGGAAGGCAGCCCCATCTCCTCCT...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGATGAGGGTGAGGATATaGGGCTCCTGGGGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAMRVRI*GSWGLP
Trigger: AGGAAGGCCCCAGGAGCCGCATATCCTCACCCTCAT...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCGGCGGCAATGGCGGCTaGAAGGGCAAGGAGAGCATA +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSGGNGG*KGKESI
Trigger: TATGCTCTCCTTGCCCTTGCAGCCGCCATTGCCGCC...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGTGCCCAGGTGTTTCTTaGTCTTCGGGTTATACAAGA +
Preference number: 4 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRCPGVS*SSGYTR
Trigger: TCTTGTATAACCCGAAGACCAAGAAACACCTGGGCA...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGAGTGTCCAGCTCCACGTaGATAATGTTGCCCATGACA +
Preference number: 4 (lower is better)
Translates to: PGALHLGEDSGSQQSRSRVSSST*IMLPMT
Trigger: TGTCATGGGCAACATTATCCACGTGGAGCTGGACAC...TCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCACAGCCCCGGCCCCTaGGGTCACCACCATGGGCTT +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPHSPGP*GHHHGL
Trigger: AAGCCCATGGTGGTGACCCCAGGGGCCGGGGCTGTG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTAGGATATGCGGCTCCTaGGGCCTTCCTCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIRICGS*GLPPPL
Trigger: AAGAGGAGGAGGAAGGCCCCAGGAGCCGCATATCCT...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCTTGTGTGTTGGGGCCTaGCTCTTCTGGGGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSLCVGA*LFWGLW
Trigger: CCAGAGCCCCCAGAAGAGCCAGGCCCCAACACACAA...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGGCCGGTGGCTGGCCTaGCAGGAGGAGAAGGTCCCT +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPGRWLA*QEEKVP
Trigger: AGGGACCTTCTCCTCCTGCCAGGCCAGCCACCGGCC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCTTCGTGCCGCTTCTTaGGTGGCCGCCGCCACGGTC +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPLRAAS*VAAATV
Trigger: GACCGTGGCGGCGGCCACCCAAGAAGCGGCACGAAG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp ACCTGGCCTCAGCCCACCTCTTGGACACCTTCCGTCTTTCATATGACTCCAGAACAGCAATTGGCTCCATaGCAAACAGGCCCCAGTCGT +
Preference number: 4 (lower is better)
Translates to: TWPQPTSWTPSVFHMTPEQQLAP*QTGPSR
Trigger: ACGACTGGGGCCTGTTTGCCATGGAGCCAATTGCTG...TTCTGGAGTCATATGAAAGACGGAAGGTGTCCAAGAGGTGGGCTGAGGCCAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
CDS-3UTR GCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGTTGGCAAATGTCACCTaGTTTGGAGGCACAGGGCCC +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPALANVT*FGGTGP
Trigger: GGGCCCTGTGCCTCCAAAGCAGGTGACATTTGCCAA...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGTGAACTTGCTCTCGTaGCGCCTCGCCTTGAATGTG +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIVNLLS*RLALNV
Trigger: CACATTCAAGGCGAGGCGGCACGAGAGCAAGTTCAC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCTCCAGCTCAGGAGCCTaGATCTCAGGGACTTCGTCC +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSSSSGA*ISGTSS
Trigger: GGACGAAGTCCCTGAGATGCAGGCTCCTGAGCTGGA...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCTCCCAAAGGCTGCTGTaGCGGTGGGCTCCTCAGGGG +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPSQRLL*RWAPQG
Trigger: CCCCTGAGGAGCCCACCGCCACAGCAGCCTTTGGGA...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAATCAGAGTCAGGCAGTaGTGTGGGACTGATGTCCTC +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIIRVRQ*CGTDVL
Trigger: GAGGACATCAGTCCCACACCACTGCCTGACTCTGAT...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCTCTCCTGAGGACTGCTaGCCCTCATCCATCCGCTCT +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSSPEDC*PSSIRS
Trigger: AGAGCGGATGGATGAGGGCCAGCAGTCCTCAGGAGA...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCTGGGGTCACCACCATaGGCTTGGGGCAGTCAGCGC +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPLGSPP*AWGSQR
Trigger: GCGCTGACTGCCCCAAGCCCATGGTGGTGACCCCAG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCGCAGAGGTGGGGGCATaGGGAAGCCAGGTTGTGGTG +
Preference number: 4 (lower is better)
Translates to: RTLGHNSHGPEIFTCLLCAEVGA*GSQVVV
Trigger: CACCACAACCTGGCTTCCCCATGCCCCCACCTCTGC...GCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCACTGTCACTGCAGGATaGGCTGGTGGTGGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSTVTAG*AGGGGG
Trigger: ACCACCACCACCACCAGCCCATCCTGCAGTGACAGT...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTCGGAGGGGTCAAACTTaGGCAGGGGCGGCCAATGCT +
Preference number: 4 (lower is better)
Translates to: HFILVRTLGHNSHGPEIFRRGQT*AGAANA
Trigger: AGCATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCG...AAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTTCGGTCTTTGGGCTTTaGCCTGTCCTCGTCCTTGTG +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNISVFGL*PVLVLV
Trigger: CACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGA...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGAGGCGATTCGGTCTTTaGGCTTTGGCCTGTCCTCGT +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPARRFGL*ALACPR
Trigger: ACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCT...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCTGTGCTCTGTGACTTaGCCAGACTGCCACAGAGGC +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSLCSVT*PDCHRG
Trigger: GCCTCTGTGGCAGTCTGGCCAAGTCACAGAGCACAG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCCACCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTTTCGAAACTTGAGCTaGTTGAACTTGAGCAGGTCG +
Preference number: 4 (lower is better)
Translates to: VPPGALHLGEDSGSQQSRFRNLS*LNLSRS
Trigger: CGACCTGCTCAAGTTCAACCAGCTCAAGTTTCGAAA...CCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCACCGCTATTGGGGGTaGCTGACGAGGAGCCAGAGC +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPHRYWG*LTRSQS
Trigger: GCTCTGGCTCCTCGTCAGTCACCCCCAATAGCGGTG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCGGCTCCAGCCACCGCTaGGTTGTGGACATAATGATG +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSGSSHR*VVDIMM
Trigger: CATCATTATGTCCACAACTCAGCGGTGGCTGGAGCC...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGTGGCTCATGTCCACCTaGATCACAGGAAACAGTCCC +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAWLMST*ITGNSP
Trigger: GGGACTGTTTCCTGTGATGCAGGTGGACATGAGCCA...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCGGCAAGTTGACAAACTaGAGTCCAGCAGAAGCGGCG +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSGKLTN*SPAEAA
Trigger: CGCCGCTTCTGCTGGACTGCAGTTTGTCAACTTGCC...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTCTGTCCTCGTCCTTGTaGTCACCGGACTTCACGGGG +
Preference number: 4 (lower is better)
Translates to: HFILVRTLGHNSHGPEIFLSSSL*SPDFTG
Trigger: CCCCGTGAAGTCCGGTGAGCACAAGGACGAGGACAG...AAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR GCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCTCAGGGACAGGCCACTaGTGCTCCCTGACAGTGGGG +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPSGTGH*CSLTVG
Trigger: CCCCACTGTCAGGGAGCAGCAGTGGCCTGTCCCTGA...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTCATTCAGCCAGTCCATaGCATTGTCCTGCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIHSASP*HCPAAA
Trigger: TGCTGCAGCAGGACAATGGCATGGACTGGCTGAATG...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCGTGTGGGCTGACGGCTaGAGTAGCTGGAATCCTGGG +
Preference number: 4 (lower is better)
Translates to: RTLGHNSHGPEIFTCLLCVWADG*SSWNPG
Trigger: CCCAGGATTCCAGCTACTCCAGCCGTCAGCCCACAC...GCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCACCAGGAGGGGTGCCTaGCTTCTCCTTGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPTRRGA*LLLGWR
Trigger: CCTCCAGCCAAGGAGAAGCCAGGCACCCCTCCTGGT...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TTTCAAAGAAAAATGGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGAGTCCAGGCTGTCATaGGGCTTCTCTGGCCCGGCT +
Preference number: 4 (lower is better)
Translates to: FQRKMGPQIRSIAYPSWDESRLS*GFSGPA
Trigger: AGCCGGGCCAGAGAAGCCCCATGACAGCCTGGACTC...ATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCCATTTTTCTTTGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCGAAGGAAGGGCAGCTTaGTGCGTTGCTCCTTCAGCA +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSEGRAA*CVAPSA
Trigger: TGCTGAAGGAGCAACGCACCAAGCTGCCCTTCCTTC...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCTCGGTCTTTGGGCTTTaGCCTGTCCTCGTCCTTGTG +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSSVFGL*PVLVLV
Trigger: CACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGA...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGGCCGGAAGAGAGGCTaGGGTGGTGAGGGTTCAGGT +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPGRKRG*GGEGSG
Trigger: ACCTGAACCCTCACCACCCCAGCCTCTCTTCCGGCC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTTGGCTGAGGAGAGGCTaGTGGAGGGATGGTAGACCC +
Preference number: 4 (lower is better)
Translates to: HFILVRTLGHNSHGPEIFWLRRG*WRDGRP
Trigger: GGGTCTACCATCCCTCCACCAGCCTCTCCTCAGCCA...AAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGCCCGTTTCTTTTTCTTaGCTGAGGAGAGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAPVSFS*LRRGWW
Trigger: CCACCAGCCTCTCCTCAGCCAAGAAAAAGAAACGGG...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTCCCGTTTCTTTTTCTTaGCTGAGGAGAGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIPVSFS*LRRGWW
Trigger: CCACCAGCCTCTCCTCAGCCAAGAAAAAGAAACGGG...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCAGCAATTGGCTCCATaGCAAACAGGCCCCAGTCGT +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSQQLAP*QTGPSR
Trigger: ACGACTGGGGCCTGTTTGCCATGGAGCCAATTGCTG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TTCAGAGCTCACTATGTTGACCAGGCTAGCTCGCAGAAATTCACCTGCCTCCATCTCGTCAGCAGCAATTaGCTCCATGGCAAACAGGCC +
Preference number: 4 (lower is better)
Translates to: FRAHYVDQASSQKFTCLHLVSSN*LHGKQA
Trigger: GGCCTGTTTGCCATGGAGCCAATTGCTGCTGACGAG...ATGGAGGCAGGTGAATTTCTGCGAGCTAGCCTGGTCAACATAGTGAGCTCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
CDS-3UTR TCA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCACTTGGTGGCGTCGATaGTGGTGTCATGGTCTACTC +
Preference number: 4 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSTWWRR*WCHGLL
Trigger: GAGTAGACCATGACACCATCATCGACGCCACCAAGT...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp TTTCAAAGAAAAATGGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGGGGGTCCTGTCTCCTaGCAGGTCCAAATCCACCTC +
Preference number: 4 (lower is better)
Translates to: FQRKMGPQIRSIAYPSWDGGPVS*QVQIHL
Trigger: GAGGTGGATTTGGACCTGGCAGGAGACAGGACCCCC...ATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCCATTTTTCTTTGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR GCA 90 bp CACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTATGAGGGTGAGGATATaGGGCTCCTGGGGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: HFILVRTLGHNSHGPEIFMRVRI*GSWGLP
Trigger: AGGAAGGCCCCAGGAGCCGCATATCCTCACCCTCAT...AAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR GCA 90 bp TCTCCCTCCCTGTCACCTGTGGGTCAAATGAAGCCTGGAAAGGAGACTGAACACGTGGTTAATGAAGCGTaGAAAGTTGCCGCACTTGGT +
Preference number: 4 (lower is better)
Translates to: SPSLSPVGQMKPGKETEHVVNEA*KVAALG
Trigger: ACCAAGTGCGGCAACTTTGCACGCTTCATTAACCAC...GTGTTCAGTCTCCTTTCCAGGCTTCATTTGACCCACAGGTGACAGGGAGGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
CDS-3UTR CCA 90 bp CACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTTGTCCAGGCGGCAGCTaGAGTAAGCTGTGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: HFILVRTLGHNSHGPEIFCPGGS*SKLCLG
Trigger: CCCAAGACACAGCTTACTCCAGCTGCCGCCTGGACA...AAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTAGGCTGCTGTGGCGGTaGGCTCCTCAGGGGGTGGCG +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLRLLWR*APQGVA
Trigger: CGCCACCCCCTGAGGAGCCCACCGCCACAGCAGCCT...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCTTCTCTGGCCCGGCTaGAGAGGACTCCAGAGTAGG +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPLLWPG*RGLQSR
Trigger: CCTACTCTGGAGTCCTCTCCAGCCGGGCCAGAGAAG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCTCTCCTGAGGACTGCTaGCCCTCATCCATCCGCTCT +
Preference number: 4 (lower is better)
Translates to: RTLGHNSHGPEIFTCLLCSPEDC*PSSIRS
Trigger: AGAGCGGATGGATGAGGGCCAGCAGTCCTCAGGAGA...GCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp AGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCACTGTCACTGCAGGATaGGCTGGTGGTGGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: RTLGHNSHGPEIFTCLLCTVTAG*AGGGGG
Trigger: ACCACCACCACCACCAGCCCATCCTGCAGTGACAGT...GCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp AGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCCTGTGCTCTGTGACTTaGCCAGACTGCCACAGAGGC +
Preference number: 4 (lower is better)
Translates to: RTLGHNSHGPEIFTCLLCLCSVT*PDCHRG
Trigger: GCCTCTGTGGCAGTCTGGCCAAGTCACAGAGCACAG...GCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCGGCCGGTGGCTGGCCTaGCAGGAGGAGAAGGTCCCT +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFGRWLA*QEEKVP
Trigger: AGGGACCTTCTCCTCCTGCCAGGCCAGCCACCGGCC...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TTTCAAAGAAAAATGGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGCAGTGGTGTGGGACTaGTGTCCTCTAGACCTGTGC +
Preference number: 4 (lower is better)
Translates to: FQRKMGPQIRSIAYPSWDAVVWD*CPLDLC
Trigger: GCACAGGTCTAGAGGACATCAGTCCCACACCACTGC...ATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCCATTTTTCTTTGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR GCA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACCTCCCCATACTTTTTaGACATGTCCCTTAGGAAGT +
Preference number: 4 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIPPHTF*TCPLGS
Trigger: ACTTCCTAAGGGACATGTGCAAAAAGTATGGGGAGG...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTGCGGCTCCCAAAGGCTaGTGTGGCGGTGGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLAAPKG*CGGGLL
Trigger: GAGGAGCCCACCGCCACAGCAGCCTTTGGGAGCCGC...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCCAGGCCCTCACCCTTaGCCCACGACTCCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFPGPHP*PTTPAD
Trigger: GTCTGCTGGAGTCGTGGGGCAAGGGTGAGGGCCTGG...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCGGGACAGGCCACTGCTaGTCCCTGACAGTGGGGGCT +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFGTGHC*SLTVGA
Trigger: AGCCCCCACTGTCAGGGAGCAGCAGTGGCCTGTCCC...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTGGGCTGCCAGGCACCTaGGGGGAGCTCAGGGACAGG +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSGLPGT*GELRDR
Trigger: CCTGTCCCTGAGCTCCCCGCAGGTGCCTGGCAGCCC...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp AGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCTGTCCTCCTCGTCGATaGCACCGTTCCAGATGTCGT +
Preference number: 4 (lower is better)
Translates to: RTLGHNSHGPEIFTCLLCCPPRR*HRSRCR
Trigger: ACGACATCTGGAACGGTGGCATCGACGAGGAGGACA...GCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCAGACCCATAGGGTCTaGGGGGCCTGGCTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFQTHRV*GAWLRW
Trigger: CCACCTGAGCCAGGCCCCCCAGACCCTATGGGTCTG...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCTGGCCACCCAGCACATaGCTCATGTCCACCTGCATC +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPWPPST*LMSTCI
Trigger: GATGCAGGTGGACATGAGCCATGTGCTGGGTGGCCA...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTATCCAGAACTTTCACTaGAGGATGAGGACGACTCAG +
Preference number: 4 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIIQNFH*RMRTTQ
Trigger: CTGAGTCGTCCTCATCCTCCAGTGAAAGTTCTGGAT...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp TCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCTTTCTTTGTGTGTTGGGGCCTaGCTCTTCTGGGGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: SGSQQSRSRNIYMSALLSLCVGA*LFWGLW
Trigger: CCAGAGCCCCCAGAAGAGCCAGGCCCCAACACACAA...AGAAAGCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTAGGCAGCTGGGGAGGTaGCCGAGGCTGGGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSRQLGR*PRLGPQ
Trigger: CTGAGGGCCCAGCCTCGGCCACCTCCCCAGCTGCCT...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTGGACAGCATGGACGGTaGGGATCTCCGGGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSGQHGR*GSPGPA
Trigger: GGCCGGCCCCGGAGATCCCCACCGTCCATGCTGTCC...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCGAAAATGGGGGCCGGTaGCTGGCCTGGCAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFENGGR*LAWQEE
Trigger: CTCCTCCTGCCAGGCCAGCCACCGGCCCCCATTTTC...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCACAGGCTGCCATCTTTaGGGCGCTTCAGAGCATCTG +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPTGCHL*GASEHL
Trigger: CAGATGCTCTGAAGCGCCTCAAAGATGGCAGCCTGT...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCACCGCTATTGGGGGTaGCTGACGAGGAGCCAGAGC +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFHRYWG*LTRSQS
Trigger: GCTCTGGCTCCTCGTCAGTCACCCCCAATAGCGGTG...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCATGACAGAAGTGCTGTaGAGGTGTTGGACGGCCTCC +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPMTEVL*RCWTAS
Trigger: GGAGGCCGTCCAACACCTGCACAGCACTTCTGTCAT...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGTGAACTTGCTCTCGTaGCGCCTCGCCTTGAATGTG +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPVNLLS*RLALNV
Trigger: CACATTCAAGGCGAGGCGGCACGAGAGCAAGTTCAC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTCCAGGCCCTCACCCTTaGCCCACGACTCCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLPGPHP*PTTPAD
Trigger: GTCTGCTGGAGTCGTGGGGCAAGGGTGAGGGCCTGG...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCTGGCACTGTCTCTGTaGTCTGTGACTTGGCCAGAC +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPLALSL*SVTWPD
Trigger: GTCTGGCCAAGTCACAGAGCACAGAGACAGTGCCAG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCACTGCCACAGAGGCCTaGGGTACGTGGAGGGTGGTC +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFTATEA*GTWRVV
Trigger: GACCACCCTCCACGTACCCCAGGCCTCTGTGGCAGT...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTCCGGGGCCGGCCTaGCTTCCTCTTGATGGGGGT +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLSPGPA*LPLDGG
Trigger: ACCCCCATCAAGAGGAAGCCAGGCCGGCCCCGGAGA...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGTTTCGAAACTTGAGCTaGTTGAACTTGAGCAGGTCG +
Preference number: 4 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAFRNLS*LNLSRS
Trigger: CGACCTGCTCAAGTTCAACCAGCTCAAGTTTCGAAA...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTCTCATCCATCCGCTCTaGGGTGGGGGTCCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLLIHPL*GGGPVS
Trigger: GGAGACAGGACCCCCACCTCAGAGCGGATGGATGAG...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTGGCCTGGCTTCCTCTTaGTGGGGGTTGGGCAGGGAG +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSGLASS*WGLGRE
Trigger: CTCCCTGCCCAACCCCCATCAAGAGGAAGCCAGGCC...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGGTTGTCCAGCTCCTTaGAGGGTAGCTTGGTGGATT +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPGCPAP*RVAWWI
Trigger: AATCCACCAAGCTACCCTTCAAGGAGCTGGACAACC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTGTCACAGCTGCCGGTaGAGGAGGACAAGAGGCGCC +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLCHSCR*RRTRGA
Trigger: GGCGCCTCTTGTCCTCCTTCACCGGCAGCTGTGACA...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGCTCGTAGAAGCGCATaGGAGTTTCCCCTTTGGTGT +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPARRSA*EFPLWC
Trigger: ACACCAAAGGGGAAACTCGCATGCGCTTCTACGAGC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTGGGGACCAGGAGGGGTaGCTGGCTTCTCCTTGGCTG +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSGDQEG*LASPWL
Trigger: CAGCCAAGGAGAAGCCAGGCACCCCTCCTGGTCCCC...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCGGGGGTCCTGTCTCCTaGCAGGTCCAAATCCACCTC +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFGGPVS*QVQIHL
Trigger: GAGGTGGATTTGGACCTGGCAGGAGACAGGACCCCC...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTGCCTGGCTTCTCCTTaGCTGGAGGCTCAGCGGGTG +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLCLASP*LEAQRV
Trigger: CACCCGCTGAGCCTCCAGCCAAGGAGAAGCCAGGCA...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTCAGACCCATAGGGTCTaGGGGGCCTGGCTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSQTHRV*GAWLRW
Trigger: CCACCTGAGCCAGGCCCCCCAGACCCTATGGGTCTG...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCAGCGGCCATGAAAGGTaGGTAGGGACAAGCCCCCTG +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFSGHER*VGTSPL
Trigger: CAGGGGGCTTGTCCCTACCCACCTTTCATGGCCGCT...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCTATGTAGCCTGGTGGTaGCACGGAGGGGTCAAACTT +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPYVAWW*HGGVKL
Trigger: AAGTTTGACCCCTCCGTGCCACCACCAGGCTACATA...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AAAACAAGTTACATACAGATGACAGAGTCTATACGCACAGACAACCCTAAAATTTGGAGGGTGGTCTTCTaGGGGAGGCTCCAGGGGGAC +
Preference number: 4 (lower is better)
Translates to: KTSYIQMTESIRTDNPKIWRVVF*GRLQGD
Trigger: GTCCCCCTGGAGCCTCCCCCAGAAGACCACCCTCCA...AATTTTAGGGTTGTCTGTGCGTATAGACTCTGTCATCTGTATGTAACTTGTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp AAAACAAGTTACATACAGATGACAGAGTCTATACGCACAGACAACCCTAAAATTAGTTTCCAGGAGCACTaGGGAGGCCAGGGGGCCGGT +
Preference number: 4 (lower is better)
Translates to: KTSYIQMTESIRTDNPKISFQEH*GGQGAG
Trigger: ACCGGCCCCCTGGCCTCCCCAGTGCTCCTGGAAACT...AATTTTAGGGTTGTCTGTGCGTATAGACTCTGTCATCTGTATGTAACTTGTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTTCTCCGGGGCCGGCCTaGCTTCCTCTTGATGGGGGT +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSSPGPA*LPLDGG
Trigger: ACCCCCATCAAGAGGAAGCCAGGCCGGCCCCGGAGA...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTGGCCGGAAGAGAGGCTaGGGTGGTGAGGGTTCAGGT +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLGRKRG*GGEGSG
Trigger: ACCTGAACCCTCACCACCCCAGCCTCTCTTCCGGCC...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCTGGACATGGCCAGGCTaGAATGCTGCCCATCGTAGC +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFWTWPG*NAAHRS
Trigger: GCTACGATGGGCAGCATTTCAGCCTGGCCATGTCCA...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTCCTCCTTGGCGCCCCTaGCTGTGGCAAAGACCACCT +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSPPWRP*LWQRPP
Trigger: AGGTGGTCTTTGCCACAGTCAGGGGCGCCAAGGAGG...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTCTCATCCATCCGCTCTaGGGTGGGGGTCCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSLIHPL*GGGPVS
Trigger: GGAGACAGGACCCCCACCTCAGAGCGGATGGATGAG...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCGTCCCGCTCCCGCTCTaGCTCTTCATCTTCCTCATC +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFVPLPL*LFIFLI
Trigger: GATGAGGAAGATGAAGAGTCAGAGCGGGAGCGGGAC...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp TTTCAAAGAAAAATGGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATTGTCCTTCTTGTCGATaGTGTAGAAGCCCTCGCTTC +
Preference number: 4 (lower is better)
Translates to: FQRKMGPQIRSIAYPSWDCPSCR*CRSPRF
Trigger: GAAGCGAGGGCTTCTACACCATCGACAAGAAGGACA...ATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCCATTTTTCTTTGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTGGACATGGCCAGGCTaGAATGCTGCCCATCGTAGC +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLWTWPG*NAAHRS
Trigger: GCTACGATGGGCAGCATTTCAGCCTGGCCATGTCCA...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTCTGTGGGGTCCTGGCTaGAGAGATAGGAGGGTGTGG +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSLWGPG*RDRRVW
Trigger: CCACACCCTCCTATCTCTTCAGCCAGGACCCCACAG...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTGCAGTGGTGTGGGACTaGTGTCCTCTAGACCTGTGC +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLAVVWD*CPLDLC
Trigger: GCACAGGTCTAGAGGACATCAGTCCCACACCACTGC...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCAGGAGGAGATGGGGCTaGCTTCCATCTGTATCTCGG +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFRRRWG*LPSVSR
Trigger: CCGAGATACAGATGGAAGGCAGCCCCATCTCCTCCT...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTGCCCAGAGGCACTTCTaGCCTGTCCTGCTCAAAGTC +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLAQRHF*PVLLKV
Trigger: GACTTTGAGCAGGACAGGGCAGAAGTGCCTCTGGGC...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTCAGGCGAGGCGTGATTaGGGTGCCTTGTCCATAGGA +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLQARRD*GALSIG
Trigger: TCCTATGGACAAGGCACCCCAATCACGCCTCGCCTG...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTGGGTCAGTGAGGCCTTaGCCATCCGCTCCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLGSVRP*PSAPSC
Trigger: ACAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCC...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTCTGTGCTCTGTGACTTaGCCAGACTGCCACAGAGGC +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLLCSVT*PDCHRG
Trigger: GCCTCTGTGGCAGTCTGGCCAAGTCACAGAGCACAG...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTCATCCAAGGACAGCATaGACGGTGGGGATCTCCGGG +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSHPRTA*TVGISG
Trigger: CCCGGAGATCCCCACCGTCCATGCTGTCCTTGGATG...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTCTGAGGAGAGGCTGGTaGAGGGATGGTAGACCCAGA +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLLRRGW*RDGRPR
Trigger: TCTGGGTCTACCATCCCTCCACCAGCCTCTCCTCAG...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTACAGGCTGCCATCTTTaGGGCGCTTCAGAGCATCTG +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLTGCHL*GASEHL
Trigger: CAGATGCTCTGAAGCGCCTCAAAGATGGCAGCCTGT...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR GCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCTGGCTCATGTCCACCTaGATCACAGGAAACAGTCCC +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFWLMST*ITGNSP
Trigger: GGGACTGTTTCCTGTGATGCAGGTGGACATGAGCCA...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTGGGTCAGTGAGGCCTTaGCCATCCGCTCCTTCTTGT +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSGSVRP*PSAPSC
Trigger: ACAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCC...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCACTCGGACTCGGAACTaGATTCAAACTCAGAAGATC +
Preference number: 4 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPTRTRN*IQTQKI
Trigger: GATCTTCTGAGTTTGAATCCAGTTCCGAGTCCGAGT...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTGGCTCCAGCCACCGCTaGGTTGTGGACATAATGATG +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSGSSHR*VVDIMM
Trigger: CATCATTATGTCCACAACTCAGCGGTGGCTGGAGCC...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp TTTCAAAGAAAAATGGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATATATGGAGAGAAAGCTaGTTTGAATCCAGAAGCCGT +
Preference number: 4 (lower is better)
Translates to: FQRKMGPQIRSIAYPSWDIWRES*FESRSR
Trigger: ACGGCTTCTGGATTCAAATCAGCTTTCTCTCCATAT...ATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCCATTTTTCTTTGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCAACAGGCCCCAGTCGTaGATGTGGCTCTTACAGAAT +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFNRPQS*MWLLQN
Trigger: ATTCTGTAAGAGCCACATTCACGACTGGGGCCTGTT...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTATGTAGCCTGGTGGTaGCACGGAGGGGTCAAACTT +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLYVAWW*HGGVKL
Trigger: AAGTTTGACCCCTCCGTGCCACCACCAGGCTACATA...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp AAAACAAGTTACATACAGATGACAGAGTCTATACGCACAGACAACCCTAAAATTCTCGTCAGCAGCAATTaGCTCCATGGCAAACAGGCC +
Preference number: 4 (lower is better)
Translates to: KTSYIQMTESIRTDNPKILVSSN*LHGKQA
Trigger: GGCCTGTTTGCCATGGAGCCAATTGCTGCTGACGAG...AATTTTAGGGTTGTCTGTGCGTATAGACTCTGTCATCTGTATGTAACTTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR TCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTGGTTGTCCAGCTCCTTaGAGGGTAGCTTGGTGGATT +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSGCPAP*RVAWWI
Trigger: AATCCACCAAGCTACCCTTCAAGGAGCTGGACAACC...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCATCCAGAACTTTCACTaGAGGATGAGGACGACTCAG +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFIQNFH*RMRTTQ
Trigger: CTGAGTCGTCCTCATCCTCCAGTGAAAGTTCTGGAT...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
CDS-3UTR GCA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTGTGGTTAATGAAGCGTaGAAAGTTGCCGCACTTGGT +
Preference number: 4 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLVVNEA*KVAALG
Trigger: ACCAAGTGCGGCAACTTTGCACGCTTCATTAACCAC...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCATATGGAGAGAAAGCTaGTTTGAATCCAGAAGCCGT +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFIWRES*FESRSR
Trigger: ACGGCTTCTGGATTCAAATCAGCTTTCTCTCCATAT...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR TCA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCGGCTCTTACAGAATTTaGGCTTCTTCTTTCGAAACT +
Preference number: 4 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFGSYRI*ASSFET
Trigger: AGTTTCGAAAGAAGAAGCTCAAATTCTGTAAGAGCC...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CCA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTTTGGGATTGCAGCTGTaGTTAATGAAGCGTGCAAAG +
Preference number: 4 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSLGLQL*LMKRAK
Trigger: CTTTGCACGCTTCATTAACCACAGCTGCAATCCCAA...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 90 bp CGGGACACCCGGGGGCGCTGGCAAGGGTGGCGGGGGCACTGTCACTaGAGGATGGGCTGGTGGTGGTGGTGGTGGTGGTGGAGGCAGAGG +
Preference number: 5 (lower is better)
Translates to: RDTRGRWQGWRGHCH*RMGWWWWWWWWRQR
Trigger: CCTCTGCCTCCACCACCACCACCACCACCACCAGCCCATCCTGCAGTGACAGTGCCCCCGCCACCCTTGCCAGCGCCCCCGGGTGTCCCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp TCACAGGAAACAGTCCCGGTGGGAAGGGAGGTAGCGGCGGAAGGATaGGTGGGGGCGGGACACCCGGGGGCGCTGGCAAGGGTGGCGGGG +
Preference number: 5 (lower is better)
Translates to: SQETVPVGREVAAEG*VGAGHPGALARVAG
Trigger: CCCCGCCACCCTTGCCAGCGCCCCCGGGTGTCCCGCCCCCACCCATCCTTCCGCCGCTACCTCCCTTCCCACCGGGACTGTTTCCTGTGA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp CTCAGGCGGTGGGCTGGGTGGCCGGAGCAGTCGAGGGGGCGGCAATaGCGGCTGCAAGGGCAAGGAGAGCATAGGAGGGGGCTCGGGCTC +
Preference number: 5 (lower is better)
Translates to: LRRWAGWPEQSRGRQ*RLQGQGEHRRGLGL
Trigger: GAGCCCGAGCCCCCTCCTATGCTCTCCTTGCCCTTGCAGCCGCCATTGCCGCCCCCTCGACTGCTCCGGCCACCCAGCCCACCGCCTGAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 90 bp GGTGGGCTGGGTGGCCGGAGCAGTCGAGGGGGCGGCAATGGCGGCTaGAAGGGCAAGGAGAGCATAGGAGGGGGCTCGGGCTCCATGTCC +
Preference number: 5 (lower is better)
Translates to: GGLGGRSSRGGGNGG*KGKESIGGGSGSMS
Trigger: GGACATGGAGCCCGAGCCCCCTCCTATGCTCTCCTTGCCCTTGCAGCCGCCATTGCCGCCCCCTCGACTGCTCCGGCCACCCAGCCCACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 90 bp CTGGAGGGGCGCGAGGAGGGTGGCGAGGGACCGCGGAAGCCGGGCTaGGAGTTAGTGCCAAAGTGGCTGAGCGGGGAGAGTTGGGAGGAG +
Preference number: 5 (lower is better)
Translates to: LEGREEGGEGPRKPG*ELVPKWLSGESWEE
Trigger: CTCCTCCCAACTCTCCCCGCTCAGCCACTTTGGCACTAACTCGCAGCCCGGCTTCCGCGGTCCCTCGCCACCCTCCTCGCGCCCCTCCAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCAGTGCTGTGCAGGTGTaGGACGGCCTCCTTGGCGCC +
Preference number: 5 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSSAVQV*DGLLGA
Trigger: GGCGCCAAGGAGGCCGTCCAACACCTGCACAGCACT...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCGGGGTCCCACCGCTATaGGGGGTGACTGACGAGGAG +
Preference number: 5 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSGVPPL*GVTDEE
Trigger: CTCCTCGTCAGTCACCCCCAATAGCGGTGGGACCCC...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCGTGCCTGGCTTCTCCTaGGCTGGAGGCTCAGCGGGT +
Preference number: 5 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSVPGFS*AGGSAG
Trigger: ACCCGCTGAGCCTCCAGCCAAGGAGAAGCCAGGCAC...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTGTGCCTGGCTTCTCCTaGGCTGGAGGCTCAGCGGGT +
Preference number: 5 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAVPGFS*AGGSAG
Trigger: ACCCGCTGAGCCTCCAGCCAAGGAGAAGCCAGGCAC...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCCCCAGGCCCTCACCCTaGCCCCACGACTCCAGCAGA +
Preference number: 5 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSPRPSP*PHDSSR
Trigger: TCTGCTGGAGTCGTGGGGCAAGGGTGAGGGCCTGGG...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTCATCTCGCCGACCGGTaGGGAGGGGACAGACAGGCA +
Preference number: 5 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAHLADR*GGDRQA
Trigger: TGCCTGTCTGTCCCCTCCCAACCGGTCGGCGAGATG...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCTCTTCGTGCCGCTTCTaGGGTGGCCGCCGCCACGGT +
Preference number: 5 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSSSCRF*GGRRHG
Trigger: ACCGTGGCGGCGGCCACCCAAGAAGCGGCACGAAGA...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 90 bp GTCCTGGCCGGCGTCGCACACCCACGCTTTTGGGGTCCCGCTTGGTaGGTTCGCAGGGAGCATCAGCTATGTCCCGGTCCCGCTCCCGCT +
Preference number: 5 (lower is better)
Translates to: VLAGVAHPRFWGPAW*VRREHQLCPGPAPA
Trigger: AGCGGGAGCGGGACCGGGACATAGCTGATGCTCCCTGCGAACTCACCAAGCGGGACCCCAAAAGCGTGGGTGTGCGACGCCGGCCAGGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp GGGCACTGTCACTGCAGGATGGGCTGGTGGTGGTGGTGGTGGTGGTaGAGGCAGAGGTGGGGGCATGGGGAAGCCAGGTTGTGGTGGGGG +
Preference number: 5 (lower is better)
Translates to: GHCHCRMGWWWWWWW*RQRWGHGEARLWWG
Trigger: CCCCCACCACAACCTGGCTTCCCCATGCCCCCACCTCTGCCTCCACCACCACCACCACCACCACCAGCCCATCCTGCAGTGACAGTGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp TGGCGGTGGCCGGACCAAAGGCCCATCCAAGGACAGCATGGACGGTaGGGATCTCCGGGGCCGGCCTGGCTTCCTCTTGATGGGGGTTGG +
Preference number: 5 (lower is better)
Translates to: WRWPDQRPIQGQHGR*GSPGPAWLPLDGGW
Trigger: CCAACCCCCATCAAGAGGAAGCCAGGCCGGCCCCGGAGATCCCCACCGTCCATGCTGTCCTTGGATGGGCCTTTGGTCCGGCCACCGCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAATCTCCACCGGGCGGTaGCTGGACATGGCCAGGCTG +
Preference number: 5 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGISTGR*LDMARL
Trigger: CAGCCTGGCCATGTCCAGCAACCGCCCGGTGGAGAT...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGTGCCTGGCTTCTCCTaGGCTGGAGGCTCAGCGGGT +
Preference number: 5 (lower is better)
Translates to: RAKAAESGNTLPSAPTALVPGFS*AGGSAG
Trigger: ACCCGCTGAGCCTCCAGCCAAGGAGAAGCCAGGCAC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 90 bp GCCCAAGGACTCCCTCATGGGGCCTCGTGGGCCCAGAGGCACTTCTaGCCTGTCCTGCTCAAAGTCCTGGCCACCCGCTGGAGGCATGCT +
Preference number: 5 (lower is better)
Translates to: AQGLPHGASWAQRHF*PVLLKVLATRWRHA
Trigger: AGCATGCCTCCAGCGGGTGGCCAGGACTTTGAGCAGGACAGGGCAGAAGTGCCTCTGGGCCCACGAGGCCCCATGAGGGAGTCCTTGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 90 bp AGGTCGCTGTCACAGCTGCCGGTGAAGGAGGACAAGAGGCGCCTCTaGTCAGACCGCCGCTCTGAGCCTGCCCGAGTAGAGGCATGGGGC +
Preference number: 5 (lower is better)
Translates to: RSLSQLPVKEDKRRL*SDRRSEPARVEAWG
Trigger: GCCCCATGCCTCTACTCGGGCAGGCTCAGAGCGGCGGTCTGAGCAGAGGCGCCTCTTGTCCTCCTTCACCGGCAGCTGTGACAGCGACCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp CCCGGGCAGGGAGCTCTGGAGAGAGCAGCATGTCCCCTTGTGTGTTaGGGCCTGGCTCTTCTGGGGGCTCTGGGCTCCCTTCCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: PGQGALERAACPLVC*GLALLGALGSLPAS
Trigger: GGAAGCTGGAAGGGAGCCCAGAGCCCCCAGAAGAGCCAGGCCCCAACACACAAGGGGACATGCTGCTCTCTCCAGAGCTCCCTGCCCGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCGTCACCACCATGGGCTaGGGGCAGTCAGCGCTGGTG +
Preference number: 5 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPVTTMG*GQSALV
Trigger: CACCAGCGCTGACTGCCCCAAGCCCATGGTGGTGAC...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGCTGGGGGTGGGGGGGGGCAGGGGCAGGTTaGGAGCCAGCACGTTGGGGG +
Preference number: 5 (lower is better)
Translates to: GPTDQEYCIPFLGCWGWGGAGAG*EPARWG
Trigger: CCCCCAACGTGCTGGCTCCAAACCTGCCCCTGCCCC...CCCCCACCCCCAGCATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCC
67% GC, longest homopolymer 9 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCCGTCCTGGGCCACTGTaGCTCAGGGAGAATGGGCTC +
Preference number: 5 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSRPGPL*LRENGL
Trigger: GAGCCCATTCTCCCTGAGCAACAGTGGCCCAGGACG...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGCCTGTCCTCGTCCTaGTGCTCACCGGACTTCACG +
Preference number: 5 (lower is better)
Translates to: RAKAAESGNTLPSAPTALGLSSS*CSPDFT
Trigger: CGTGAAGTCCGGTGAGCACAAGGACGAGGACAGGCC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACGCACACCCACGCTTTaGGGGTCCCGCTTGGTGAGT +
Preference number: 5 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGRTPTL*GSRLVS
Trigger: ACTCACCAAGCGGGACCCCAAAAGCGTGGGTGTGCG...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTCGGTCCTCCTCTTCCTaGTCTGAGGCGGAGGATGAG +
Preference number: 5 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVARSSSS*SEAEDE
Trigger: CTCATCCTCCGCCTCAGACAAGGAAGAGGAGGACCG...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCGAGCAGCATGTCCCCTaGTGTGTTGGGGCCTGGCTC +
Preference number: 5 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSEQHVP*CVGAWL
Trigger: GAGCCAGGCCCCAACACACAAGGGGACATGCTGCTC...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 90 bp GCCGGTGAAGGAGGACAAGAGGCGCCTCTGCTCAGACCGCCGCTCTaGGCCTGCCCGAGTAGAGGCATGGGGCTGGGCTGGGATACTCAT +
Preference number: 5 (lower is better)
Translates to: AGEGGQEAPLLRPPL*ACPSRGMGLGWDTH
Trigger: ATGAGTATCCCAGCCCAGCCCCATGCCTCTACTCGGGCAGGCTCAGAGCGGCGGTCTGAGCAGAGGCGCCTCTTGTCCTCCTTCACCGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 90 bp CCTGGTGGTGGCACGGAGGGGTCAAACTTGGGCAGGGGCGGCCAATaGTGTCCACGTCCTGGGCCACTGTTGCTCAGGGAGAATGGGCTC +
Preference number: 5 (lower is better)
Translates to: PGGGTEGSNLGRGGQ*CPRPGPLLLRENGL
Trigger: GAGCCCATTCTCCCTGAGCAACAGTGGCCCAGGACGTGGACAGCATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp CGTGGCCTTGTGCGGGTCCTCCTGACGTGGTATGTAGCCTGGTGGTaGCACGGAGGGGTCAAACTTGGGCAGGGGCGGCCAATGCTGTCC +
Preference number: 5 (lower is better)
Translates to: RGLVRVLLTWYVAWW*HGGVKLGQGRPMLS
Trigger: GGACAGCATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGGCTACATACCACGTCAGGAGGACCCGCACAAGGCCACG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp CACCGTGGCCTTGTGCGGGTCCTCCTGACGTGGTATGTAGCCTGGTaGTGGCACGGAGGGGTCAAACTTGGGCAGGGGCGGCCAATGCTG +
Preference number: 5 (lower is better)
Translates to: HRGLVRVLLTWYVAW*WHGGVKLGQGRPML
Trigger: CAGCATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGGCTACATACCACGTCAGGAGGACCCGCACAAGGCCACGGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp CCGTGTTCCGGAAGTCCAAGGTCACAGCCCGAGGGTCATGTGCGCTaGGGAAAATGGGGGCCGGTGGCTGGCCTGGCAGGAGGAGAAGGT +
Preference number: 5 (lower is better)
Translates to: PCSGSPRSQPEGHVR*GKWGPVAGLAGGEG
Trigger: ACCTTCTCCTCCTGCCAGGCCAGCCACCGGCCCCCATTTTCCCCAGCGCACATGACCCTCGGGCTGTGACCTTGGACTTCCGGAACACGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTATGCGAGTTTCCCCTTaGGTGTCCAGCTCCACGTGG +
Preference number: 5 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAMRVSP*VSSSTW
Trigger: CCACGTGGAGCTGGACACCAAAGGGGAAACTCGCAT...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGAGTAAGCTGTGTCTaGGGAGAAGGGGGTCCCACC +
Preference number: 5 (lower is better)
Translates to: RAKAAESGNTLPSAPTALGVSCV*GEGGPT
Trigger: GGTGGGACCCCCTTCTCCCAAGACACAGCTTACTCC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCGGAGTAAGCTGTGTCTaGGGAGAAGGGGGTCCCACC +
Preference number: 5 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSGVSCV*GEGGPT
Trigger: GGTGGGACCCCCTTCTCCCAAGACACAGCTTACTCC...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGGGGCAGGGGCAGGTTaGGAGCCAGCACGTTGGGGG +
Preference number: 5 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRGAGAG*EPARWG
Trigger: CCCCCAACGTGCTGGCTCCAAACCTGCCCCTGCCCC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
66% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCGGGGTCAGTGAGGCCTaGGCCATCCGCTCCTTCTTG +
Preference number: 5 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPGVSEA*AIRSFL
Trigger: CAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCCC...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGAGGCGATTCGGTCTTaGGGCTTTGGCCTGTCCTCG +
Preference number: 5 (lower is better)
Translates to: RAKAAESGNTLPSAPTALEAIRS*GFGLSS
Trigger: CGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTC...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCGAGGCGATTCGGTCTTaGGGCTTTGGCCTGTCCTCG +
Preference number: 5 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSEAIRS*GFGLSS
Trigger: CGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTC...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGCCCAGGCCCTCACCCTaGCCCCACGACTCCAGCAGA +
Preference number: 5 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLPRPSP*PHDSSR
Trigger: TCTGCTGGAGTCGTGGGGCAAGGGTGAGGGCCTGGG...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACTTTTGGGGTCCCGCTaGGTGAGTTCGCAGGGAGCA +
Preference number: 5 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGLLGSR*VSSQGA
Trigger: TGCTCCCTGCGAACTCACCAAGCGGGACCCCAAAAG...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCGCACACCCACGCTTTaGGGGTCCCGCTTGGTGAGT +
Preference number: 5 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPRTPTL*GSRLVS
Trigger: ACTCACCAAGCGGGACCCCAAAAGCGTGGGTGTGCG...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTCTGTGCTCTGTGACTaGGCCAGACTGCCACAGAGG +
Preference number: 5 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVASVLCD*ARLPQR
Trigger: CCTCTGTGGCAGTCTGGCCAAGTCACAGAGCACAGA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 90 bp GGCATGCCACCCCACTGGCCACCCAGCACATGGCTCATGTCCACCTaGATCACAGGAAACAGTCCCGGTGGGAAGGGAGGTAGCGGCGGA +
Preference number: 5 (lower is better)
Translates to: GMPPHWPPSTWLMST*ITGNSPGGKGGSGG
Trigger: TCCGCCGCTACCTCCCTTCCCACCGGGACTGTTTCCTGTGATGCAGGTGGACATGAGCCATGTGCTGGGTGGCCAGTGGGGTGGCATGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp CCTGACGTGGTATGTAGCCTGGTGGTGGCACGGAGGGGTCAAACTTaGGCAGGGGCGGCCAATGCTGTCCACGTCCTGGGCCACTGTTGC +
Preference number: 5 (lower is better)
Translates to: PDVVCSLVVARRGQT*AGAANAVHVLGHCC
Trigger: GCAACAGTGGCCCAGGACGTGGACAGCATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGGCTACATACCACGTCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp ATCCACCGTGGCCTTGTGCGGGTCCTCCTGACGTGGTATGTAGCCTaGTGGTGGCACGGAGGGGTCAAACTTGGGCAGGGGCGGCCAATG +
Preference number: 5 (lower is better)
Translates to: IHRGLVRVLLTWYVA*WWHGGVKLGQGRPM
Trigger: CATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGGCTACATACCACGTCAGGAGGACCCGCACAAGGCCACGGTGGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp TGGGGGCTCTGGGCTCCCTTCCAGCTTCCGAGCACCCATGGGCAATaGAGGCTCCTCCAGCTCAGGAGCCTGCATCTCAGGGACTTCGTC +
Preference number: 5 (lower is better)
Translates to: WGLWAPFQLPSTHGQ*RLLQLRSLHLRDFV
Trigger: GACGAAGTCCCTGAGATGCAGGCTCCTGAGCTGGAGGAGCCTCCATTGCCCATGGGTGCTCGGAAGCTGGAAGGGAGCCCAGAGCCCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp GCTCTTCTGGGGGCTCTGGGCTCCCTTCCAGCTTCCGAGCACCCATaGGCAATGGAGGCTCCTCCAGCTCAGGAGCCTGCATCTCAGGGA +
Preference number: 5 (lower is better)
Translates to: ALLGALGSLPASEHP*AMEAPPAQEPASQG
Trigger: TCCCTGAGATGCAGGCTCCTGAGCTGGAGGAGCCTCCATTGCCCATGGGTGCTCGGAAGCTGGAAGGGAGCCCAGAGCCCCCAGAAGAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCCAAATGTCACCTGCTTaGGAGGCACAGGGCCCACGT +
Preference number: 5 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSQMSPA*EAQGPR
Trigger: ACGTGGGCCCTGTGCCTCCAAAGCAGGTGACATTTG...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGCGGTCCTCCTCTTCCTaGTCTGAGGCGGAGGATGAG +
Preference number: 5 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGRSSSS*SEAEDE
Trigger: CTCATCCTCCGCCTCAGACAAGGAAGAGGAGGACCG...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp CAGCAAGACCCCATCCACCGTGGCCTTGTGCGGGTCCTCCTGACGTaGTATGTAGCCTGGTGGTGGCACGGAGGGGTCAAACTTGGGCAG +
Preference number: 5 (lower is better)
Translates to: QQDPIHRGLVRVLLT*YVAWWWHGGVKLGQ
Trigger: CTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGGCTACATACCACGTCAGGAGGACCCGCACAAGGCCACGGTGGATGGGGTCTTGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp GCCCCACGACTCCAGCAGACAGGAGGCGATTCGGTCTTTGGGCTTTaGCCTGTCCTCGTCCTTGTGCTCACCGGACTTCACGGGGGTCAG +
Preference number: 5 (lower is better)
Translates to: APRLQQTGGDSVFGL*PVLVLVLTGLHGGQ
Trigger: CTGACCCCCGTGAAGTCCGGTGAGCACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTCCTGTCTGCTGGAGTCGTGGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp CCTCGTGGGCCCAGAGGCACTTCTGCCCTGTCCTGCTCAAAGTCCTaGCCACCCGCTGGAGGCATGCTCTCTTCTGCCATAGCCACTACC +
Preference number: 5 (lower is better)
Translates to: PRGPRGTSALSCSKS*PPAGGMLSSAIATT
Trigger: GGTAGTGGCTATGGCAGAAGAGAGCATGCCTCCAGCGGGTGGCCAGGACTTTGAGCAGGACAGGGCAGAAGTGCCTCTGGGCCCACGAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGATCTCCACCGGGCGGTaGCTGGACATGGCCAGGCTG +
Preference number: 5 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRISTGR*LDMARL
Trigger: CAGCCTGGCCATGTCCAGCAACCGCCCGGTGGAGAT...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTGACAGCTCCAGCTCCTaGTTTTTGGTCCAGATTCCG +
Preference number: 5 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVADSSSS*FLVQIP
Trigger: CGGAATCTGGACCAAAAACAAGGAGCTGGAGCTGTC...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGGGCCTGTCCTCGTCCTaGTGCTCACCGGACTTCACG +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWGLSSS*CSPDFT
Trigger: CGTGAAGTCCGGTGAGCACAAGGACGAGGACAGGCC...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGTTCGGTCTTTGGGCTTaGGCCTGTCCTCGTCCTTGT +
Preference number: 5 (lower is better)
Translates to: RAKAAESGNTLPSAPTALFGLWA*ACPRPC
Trigger: ACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAA...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TACACCTGGGCAGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCATGAAGCGTGCAAAGTaGCCGCACTTGGTGGCGTCG +
Preference number: 5 (lower is better)
Translates to: YTWAGPRLPRVETPFPAPMKRAK*PHLVAS
Trigger: CGACGCCACCAAGTGCGGCAACTTTGCACGCTTCAT...GGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCTGCCCAGGTGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 90 bp AGCTGTGTCTTGGGAGAAGGGGGTCCCACCGCTATTGGGGGTGACTaGCGAGGAGCCAGAGCCGCAGCCTGCAGACAGGCTGCCATCTTT +
Preference number: 5 (lower is better)
Translates to: SCVLGEGGPTAIGGD*RGARAAACRQAAIF
Trigger: AAAGATGGCAGCCTGTCTGCAGGCTGCGGCTCTGGCTCCTCGTCAGTCACCCCCAATAGCGGTGGGACCCCCTTCTCCCAAGACACAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 90 bp AGTAAGCTGTGTCTTGGGAGAAGGGGGTCCCACCGCTATTGGGGGTaGCTGACGAGGAGCCAGAGCCGCAGCCTGCAGACAGGCTGCCAT +
Preference number: 5 (lower is better)
Translates to: SKLCLGRRGSHRYWG*LTRSQSRSLQTGCH
Trigger: ATGGCAGCCTGTCTGCAGGCTGCGGCTCTGGCTCCTCGTCAGTCACCCCCAATAGCGGTGGGACCCCCTTCTCCCAAGACACAGCTTACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 90 bp TGGAGTAGCTGGAATCCTGGGAGAAAGGGGTGCCCAGGCGAGGCGTaGTTGGGGTGCCTTGTCCATAGGAGTTGGGTGTGTCCAGGCGGC +
Preference number: 5 (lower is better)
Translates to: WSSWNPGRKGCPGEA*LGCLVHRSWVCPGG
Trigger: GCCGCCTGGACACACCCAACTCCTATGGACAAGGCACCCCAATCACGCCTCGCCTGGGCACCCCTTTCTCCCAGGATTCCAGCTACTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 90 bp GGCCCAAGTCCTCATCTTCATCAGAGTCAGGCAGTGGTGTGGGACTaGTGTCCTCTAGACCTGTGCTGGAGGGGCGCGAGGAGGGTGGCG +
Preference number: 5 (lower is better)
Translates to: GPSPHLHQSQAVVWD*CPLDLCWRGARRVA
Trigger: CGCCACCCTCCTCGCGCCCCTCCAGCACAGGTCTAGAGGACATCAGTCCCACACCACTGCCTGACTCTGATGAAGATGAGGACTTGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp GTAGCTGGAATCCTGGGAGAAAGGGGTGCCCAGGCGAGGCGTGATTaGGGTGCCTTGTCCATAGGAGTTGGGTGTGTCCAGGCGGCAGCT +
Preference number: 5 (lower is better)
Translates to: VAGILGERGAQARRD*GALSIGVGCVQAAA
Trigger: AGCTGCCGCCTGGACACACCCAACTCCTATGGACAAGGCACCCCAATCACGCCTCGCCTGGGCACCCCTTTCTCCCAGGATTCCAGCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp CACCCTTGCCCCACGACTCCAGCAGACAGGAGGCGATTCGGTCTTTaGGCTTTGGCCTGTCCTCGTCCTTGTGCTCACCGGACTTCACGG +
Preference number: 5 (lower is better)
Translates to: HPCPTTPADRRRFGL*ALACPRPCAHRTSR
Trigger: CCGTGAAGTCCGGTGAGCACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTCCTGTCTGCTGGAGTCGTGGGGCAAGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp CAGAGGCACTTCTGCCCTGTCCTGCTCAAAGTCCTGGCCACCCGCTaGAGGCATGCTCTCTTCTGCCATAGCCACTACCGTGGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: QRHFCPVLLKVLATR*RHALFCHSHYRGCS
Trigger: GCTGCAGCCACGGTAGTGGCTATGGCAGAAGAGAGCATGCCTCCAGCGGGTGGCCAGGACTTTGAGCAGGACAGGGCAGAAGTGCCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAGACAGCTCCAGCTCCTaGTTTTTGGTCCAGATTCCG +
Preference number: 5 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGDSSSS*FLVQIP
Trigger: CGGAATCTGGACCAAAAACAAGGAGCTGGAGCTGTC...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCTCATCGATCTTGAATTaGGGCACAGACAGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: WKHPSQRPHRTGDTLGGSSSILN*GTDSSS
Trigger: GCTGGAGCTGTCTGTGCCCAAATTCAAGATCGATGA...GGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp AGGGCCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGTCCTTCCTCTTGACCTaGAAGGAGGGCAAGCGAATG +
Preference number: 5 (lower is better)
Translates to: RAKAAESGNTLPSAPTALSFLLT*KEGKRM
Trigger: CATTCGCTTGCCCTCCTTCAAGGTCAAGAGGAAGGA...CAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGGCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGAGCAGCATGTCCCCTaGTGTGTTGGGGCCTGGCTC +
Preference number: 5 (lower is better)
Translates to: CIDGQVGALRVCSVLRLREQHVP*CVGAWL
Trigger: GAGCCAGGCCCCAACACACAAGGGGACATGCTGCTC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCTGGTTGTCCAGCTCCTaGAAGGGTAGCTTGGTGGAT +
Preference number: 5 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSWLSSS*KGSLVD
Trigger: ATCCACCAAGCTACCCTTCAAGGAGCTGGACAACCA...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGTGGAGCCTGGCCCAGGGCGAGCGAGGGTTCTCCTGGGCTACGGCTGACATCCCGAAACTTGAGCTGGTaGAACTTGAGCAGGTCGCTG +
Preference number: 5 (lower is better)
Translates to: CGAWPRASEGSPGLRLTSRNLSW*NLSRSL
Trigger: CAGCGACCTGCTCAAGTTCAACCAGCTCAAGTTTCG...GGATGTCAGCCGTAGCCCAGGAGAACCCTCGCTCGCCCTGGGCCAGGCTCCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGCAAATGTCACCTGCTTaGGAGGCACAGGGCCCACGT +
Preference number: 5 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLQMSPA*EAQGPR
Trigger: ACGTGGGCCCTGTGCCTCCAAAGCAGGTGACATTTG...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAGGAGAGAAAGCTGATTaGAATCCAGAAGCCGTGGCT +
Preference number: 5 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGGEKAD*NPEAVA
Trigger: AGCCACGGCTTCTGGATTCAAATCAGCTTTCTCTCC...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GTCCCACCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGGGGGTCAGTGAGGCCTaGGCCATCCGCTCCTTCTTG +
Preference number: 5 (lower is better)
Translates to: VPPGALHLGEDSGSQQSRGVSEA*AIRSFL
Trigger: CAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCCC...CCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGAC
61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGGAGGCGATTCGGTCTTaGGGCTTTGGCCTGTCCTCG +
Preference number: 5 (lower is better)
Translates to: CIDGQVGALRVCSVLRLREAIRS*GFGLSS
Trigger: CGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTC...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGCATCCTTGTCGGAGCTaGAGGAGGATGAGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLHPCRS*RRMRVR
Trigger: CCTCACCCTCATCCTCCTCAAGCTCCGACAAGGATG...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGCTGGGGGTGGGGGCCGTGGCTGCAGCCATaGCAGTCTCTTTCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: GPTDQEYCIPFLGCWGWGPWLQP*QSLSPP
Trigger: AGGAGGAGAAAGAGACTGCAATGGCTGCAGCCACGG...CCCCCACCCCCAGCATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp GCGGATCCCGTGACGGGGCTCAGTGAGGCCCTGCCAGGGACCAAGCAGCCCTTCTTGAGGTATCTCAGCTaGTCCTTCTTGTCGATGGTG +
Preference number: 5 (lower is better)
Translates to: ADPVTGLSEALPGTKQPFLRYLS*SFLSMV
Trigger: CACCATCGACAAGAAGGACAAGCTGAGATACCTCAA...GAAGGGCTGCTTGGTCCCTGGCAGGGCCTCACTGAGCCCCGTCACGGGATCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTACGTGATCTCCTCGTaGACGTTGATGTGCTGCTTA +
Preference number: 5 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAYVISS*TLMCCL
Trigger: TAAGCAGCACATCAACGTCAACGAGGAGATCACGTA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 90 bp CATCCAGCTCACCAACAGGGAGGGTCTGAGGGGTGTACCGGCCGGTaGCCAACAGCTCGTAGAAGCGCATGCGAGTTTCCCCTTTGGTGT +
Preference number: 5 (lower is better)
Translates to: HPAHQQGGSEGCTGR*PTARRSACEFPLWC
Trigger: ACACCAAAGGGGAAACTCGCATGCGCTTCTACGAGCTGTTGGTCACCGGCCGGTACACCCCTCAGACCCTCCCTGTTGGTGAGCTGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 90 bp GAGGTCCGAGGAGCCTCGGAAAGGAGCTGTGGCTCCAGCCACCGCTaGGTTGTGGACATAATGATGTTCGTGGCGGCGGTTGTAGGCATC +
Preference number: 5 (lower is better)
Translates to: EVRGASERSCGSSHR*VVDIMMFVAAVVGI
Trigger: GATGCCTACAACCGCCGCCACGAACATCATTATGTCCACAACTCAGCGGTGGCTGGAGCCACAGCTCCTTTCCGAGGCTCCTCGGACCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 90 bp GAGGTGGAGTATGGGCAAACGTGGTGGCATCCTGCGACTGAGCCTTaGAGGGAGTCCCGCTGCTGCCAACTGTCCCAAAAGAGAGGTCCG +
Preference number: 5 (lower is better)
Translates to: EVEYGQTWWHPATEP*RESRCCQLSQKRGP
Trigger: CGGACCTCTCTTTTGGGACAGTTGGCAGCAGCGGGACTCCCTTCAAGGCTCAGTCGCAGGATGCCACCACGTTTGCCCATACTCCACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 90 bp TGGGCAGGAGGTGGAGTATGGGCAAACGTGGTGGCATCCTGCGACTaGGCCTTGAAGGGAGTCCCGCTGCTGCCAACTGTCCCAAAAGAG +
Preference number: 5 (lower is better)
Translates to: WAGGGVWANVVASCD*ALKGVPLLPTVPKE
Trigger: CTCTTTTGGGACAGTTGGCAGCAGCGGGACTCCCTTCAAGGCTCAGTCGCAGGATGCCACCACGTTTGCCCATACTCCACCTCCTGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp TTGGGGTGCCTTGTCCATAGGAGTTGGGTGTGTCCAGGCGGCAGCTaGAGTAAGCTGTGTCTTGGGAGAAGGGGGTCCCACCGCTATTGG +
Preference number: 5 (lower is better)
Translates to: LGCLVHRSWVCPGGS*SKLCLGRRGSHRYW
Trigger: CCAATAGCGGTGGGACCCCCTTCTCCCAAGACACAGCTTACTCCAGCTGCCGCCTGGACACACCCAACTCCTATGGACAAGGCACCCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp GGCCAGGTCCACGTACTCTTCAGTGACCTCATCTCGGCGAGGTCCTaGGGGGATAGCTTCAGAGGGCCACTGGTTGTCCAGCTCCTTGAA +
Preference number: 5 (lower is better)
Translates to: GQVHVLFSDLISARS*GDSFRGPLVVQLLE
Trigger: TTCAAGGAGCTGGACAACCAGTGGCCCTCTGAAGCTATCCCCCCAGGACCTCGCCGAGATGAGGTCACTGAAGAGTACGTGGACCTGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCAAGGCTGCCGAGAGTGGAAACACCCTTCCCAGCGCCCCCACCGCACTGGGGAATGCCCAGGTGTTTCTaGGTCTTCGGGTTATACAAG +
Preference number: 5 (lower is better)
Translates to: PRLPRVETPFPAPPPHWGMPRCF*VFGLYK
Trigger: CTTGTATAACCCGAAGACCAAGAAACACCTGGGCAT...TCCCCAGTGCGGTGGGGGCGCTGGGAAGGGTGTTTCCACTCTCGGCAGCCTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGGCAAAGACCACCTaGGCAATGCCCAGGTGTTTC +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWVAKTT*AMPRCF
Trigger: GAAACACCTGGGCATTGCCAAGGTGGTCTTTGCCAC...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGCGTGATTGGGGTGCCTaGTCCATAGGAGTTGGGTGT +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWRDWGA*SIGVGC
Trigger: ACACCCAACTCCTATGGACAAGGCACCCCAATCACG...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CTGGGTGGGGGCCTCCAGCAGGGTGACATGGGTGTGGGGGTTAGGGTAATGGGGGGAGAGAAAGCTGATTaGAATCCAGAAGCCGTGGCT +
Preference number: 5 (lower is better)
Translates to: LGGGLQQGDMGVGVRVMGGEKAD*NPEAVA
Trigger: AGCCACGGCTTCTGGATTCAAATCAGCTTTCTCTCC...CCCCATTACCCTAACCCCCACACCCATGTCACCCTGCTGGAGGCCCCCACCCAG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGGCCATCCGCTCCTTCTaGTCCCACCATTCGTCAAAG +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWAIRSF*SHHSSK
Trigger: CTTTGACGAATGGTGGGACAAGAAGGAGCGGATGGC...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGGCCATCCGCTCCTTCTaGTCCCACCATTCGTCAAAG +
Preference number: 5 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLAIRSF*SHHSSK
Trigger: CTTTGACGAATGGTGGGACAAGAAGGAGCGGATGGC...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGCATCCTTGTCGGAGCTaGAGGAGGATGAGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRHPCRS*RRMRVR
Trigger: CCTCACCCTCATCCTCCTCAAGCTCCGACAAGGATG...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAGGGGTCCCACCGCTATaGGGGGTGACTGACGAGGAG +
Preference number: 5 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIGVPPL*GVTDEE
Trigger: CTCCTCGTCAGTCACCCCCAATAGCGGTGGGACCCC...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTCCCAGGCCCTCACCCTaGCCCCACGACTCCAGCAGA +
Preference number: 5 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIPRPSP*PHDSSR
Trigger: TCTGCTGGAGTCGTGGGGCAAGGGTGAGGGCCTGGG...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGTCCTTCCTCTTGACCTaGAAGGAGGGCAAGCGAATG +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWSFLLT*KEGKRM
Trigger: CATTCGCTTGCCCTCCTTCAAGGTCAAGAGGAAGGA...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTTCTTCGTGCCGCTTCTaGGGTGGCCGCCGCCACGGT +
Preference number: 5 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNISSCRF*GGRRHG
Trigger: ACCGTGGCGGCGGCCACCCAAGAAGCGGCACGAAGA...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGCGAAACTTGAGCTGGTaGAACTTGAGCAGGTCGCTG +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWRNLSW*NLSRSL
Trigger: CAGCGACCTGCTCAAGTTCAACCAGCTCAAGTTTCG...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCTTCCCAGCGCCCCCACCGCACTGGGGACACCCTGGGAGGCTCCATCGTTGCTTTCTTCTTTCGAAACTaGAGCTGGTTGAACTTGAGC +
Preference number: 5 (lower is better)
Translates to: PSQRPHRTGDTLGGSIVAFFFRN*SWLNLS
Trigger: GCTCAAGTTCAACCAGCTCAAGTTTCGAAAGAAGAA...AGCAACGATGGAGCCTCCCAGGGTGTCCCCAGTGCGGTGGGGGCGCTGGGAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATGCTGGGGGTGGGGGTCATCGATCTTGAATTaGGGCACAGACAGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: GPTDQEYCIPFLGCWGWGSSILN*GTDSSS
Trigger: GCTGGAGCTGTCTGTGCCCAAATTCAAGATCGATGA...CCCCCACCCCCAGCATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGTCCACGTGGATAATGTaGCCCATGACAGAAGTGCTG +
Preference number: 5 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLSTWIM*PMTEVL
Trigger: CAGCACTTCTGTCATGGGCAACATTATCCACGTGGA...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGAATGCGAGTTTCCCCTTaGGTGTCCAGCTCCACGTGG +
Preference number: 5 (lower is better)
Translates to: PGALHLGEDSGSQQSRSRMRVSP*VSSSTW
Trigger: CCACGTGGAGCTGGACACCAAAGGGGAAACTCGCAT...TCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGGGAGAGAAAGCTGATTaGAATCCAGAAGCCGTGGCT +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWGEKAD*NPEAVA
Trigger: AGCCACGGCTTCTGGATTCAAATCAGCTTTCTCTCC...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAGGGGTCAGTGAGGCCTaGGCCATCCGCTCCTTCTTG +
Preference number: 5 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIGVSEA*AIRSFL
Trigger: CAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCCC...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAGGCCTGTCCTCGTCCTaGTGCTCACCGGACTTCACG +
Preference number: 5 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIGLSSS*CSPDFT
Trigger: CGTGAAGTCCGGTGAGCACAAGGACGAGGACAGGCC...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGAGGTCCTTCCTCTTGACCTaGAAGGAGGGCAAGCGAATG +
Preference number: 5 (lower is better)
Translates to: CIDGQVGALRVCSVLRLRSFLLT*KEGKRM
Trigger: CATTCGCTTGCCCTCCTTCAAGGTCAAGAGGAAGGA...CCTCAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGCATCTCGCCGACCGGTaGGGAGGGGACAGACAGGCA +
Preference number: 5 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAHLADR*GGDRQA
Trigger: TGCCTGTCTGTCCCCTCCCAACCGGTCGGCGAGATG...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTCACGGTCCCCGCACCTaGGCCAGGTCCACGTACTCT +
Preference number: 5 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIHGPRT*ARSTYS
Trigger: AGAGTACGTGGACCTGGCCAAGGTGCGGGGACCGTG...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp TCTTCATCTTCCTCATCCACAGAGGTTGAAGGCCGTAGCCGCTTCTaGTCACCAGAAGAGGCTGTGTCCGGTGGCTCCTTCCTCTTGACC +
Preference number: 5 (lower is better)
Translates to: SSSSSSTEVEGRSRF*SPEEAVSGGSFLLT
Trigger: GGTCAAGAGGAAGGAGCCACCGGACACAGCCTCTTCTGGTGACCAGAAGCGGCTACGGCCTTCAACCTCTGTGGATGAGGAAGATGAAGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CGCTGCATCGACGGGCAGGTAGGGGCCTTGCGGGTCTGTAGTGTTCTGAGGTTGACCTCCCCATACTTTTaGCACATGTCCCTTAGGAAG +
Preference number: 5 (lower is better)
Translates to: RCIDGQVGALRVCSVLRLTSPYF*HMSLRK
Trigger: CTTCCTAAGGGACATGTGCAAAAAGTATGGGGAGGT...CAACCTCAGAACACTACAGACCCGCAAGGCCCCTACCTGCCCGTCGATGCAGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGACCTCCCCATACTTTTaGCACATGTCCCTTAGGAAG +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWTSPYF*HMSLRK
Trigger: CTTCCTAAGGGACATGTGCAAAAAGTATGGGGAGGT...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGATGCCCAGGTGTTTCTaGGTCTTCGGGTTATACAAG +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWMPRCF*VFGLYK
Trigger: CTTGTATAACCCGAAGACCAAGAAACACCTGGGCAT...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGCGTCCTGGGCCACTGTaGCTCAGGGAGAATGGGCTC +
Preference number: 5 (lower is better)
Translates to: QTDGGRMESQIHKDTKPARPGPL*LRENGL
Trigger: GAGCCCATTCTCCCTGAGCAACAGTGGCCCAGGACG...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GTCCCACCCGGAGCACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTGGTTGTCCAGCTCCTaGAAGGGTAGCTTGGTGGAT +
Preference number: 5 (lower is better)
Translates to: VPPGALHLGEDSGSQQSRWLSSS*KGSLVD
Trigger: ATCCACCAAGCTACCCTTCAAGGAGCTGGACAACCA...CCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTGCTCCGGGTGGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGTTGAGGTATCTCAGCTaGTCCTTCTTGTCGATGGTG +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWLRYLS*SFLSMV
Trigger: CACCATCGACAAGAAGGACAAGCTGAGATACCTCAA...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CACCTGGCCTCAGCCCACCTCTTGGACACCTTCCGTCTTTCATATGACTCCAGAATGAAGCGTGCAAAGTaGCCGCACTTGGTGGCGTCG +
Preference number: 5 (lower is better)
Translates to: HLASAHLLDTFRLSYDSRMKRAK*PHLVAS
Trigger: CGACGCCACCAAGTGCGGCAACTTTGCACGCTTCAT...TCTGGAGTCATATGAAAGACGGAAGGTGTCCAAGAGGTGGGCTGAGGCCAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
CDS-3UTR CAA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGGAGTAAGCTGTGTCTaGGGAGAAGGGGGTCCCACC +
Preference number: 5 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIGVSCV*GEGGPT
Trigger: GGTGGGACCCCCTTCTCCCAAGACACAGCTTACTCC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGGGGCAGGGGCAGGTTaGGAGCCAGCACGTTGGGGG +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPGAGAG*EPARWG
Trigger: CCCCCAACGTGCTGGCTCCAAACCTGCCCCTGCCCC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACCTCATCCACAGAGGTaGAAGGCCGTAGCCGCTTCT +
Preference number: 5 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIPHPQR*KAVAAS
Trigger: AGAAGCGGCTACGGCCTTCAACCTCTGTGGATGAGG...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGCGGTCCTCCTCTTCCTaGTCTGAGGCGGAGGATGAG +
Preference number: 5 (lower is better)
Translates to: QTDGGRMESQIHKDTKPARSSSS*SEAEDE
Trigger: CTCATCCTCCGCCTCAGACAAGGAAGAGGAGGACCG...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 90 bp GCAGACAGGCTGCCATCTTTGAGGCGCTTCAGAGCATCTGATAGCTaGAGGGTCTCGCTCACAATCGGAGAAATAGCATCCAGCTCACCA +
Preference number: 5 (lower is better)
Translates to: ADRLPSLRRFRASDS*RVSLTIGEIASSSP
Trigger: TGGTGAGCTGGATGCTATTTCTCCGATTGTGAGCGAGACCCTGCAGCTATCAGATGCTCTGAAGCGCCTCAAAGATGGCAGCCTGTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 90 bp TGCTCTCTGTCTCCTCCTCCTCAGAATCTCCATTGTCTTTCTCGCTaGCCTCCGACAGGGGTGCACCCTGATCGTCGATGTCTGAATCAA +
Preference number: 5 (lower is better)
Translates to: CSLSPPPQNLHCLSR*PPTGVHPDRRCLNQ
Trigger: TTGATTCAGACATCGACGATCAGGGTGCACCCCTGTCGGAGGCCAGCGAGAAAGACAATGGAGATTCTGAGGAGGAGGAGACAGAGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp GGACGGACGGACAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATAGACAGGCTGCCATCTTaGAGGCGCTTCAGAGCATCT +
Preference number: 5 (lower is better)
Translates to: GRTDRRTEGEWKARYIRIDRLPS*RRFRAS
Trigger: AGATGCTCTGAAGCGCCTCAAAGATGGCAGCCTGTC...TATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTGTCCGTCCGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp AGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCGGGGTCCCACCGCTATaGGGGGTGACTGACGAGGAG +
Preference number: 5 (lower is better)
Translates to: RTLGHNSHGPEIFTCLLCGVPPL*GVTDEE
Trigger: CTCCTCGTCAGTCACCCCCAATAGCGGTGGGACCCC...GCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp CACTTCATCTTGGTGAGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTGTCACCACCATGGGCTaGGGGCAGTCAGCGCTGGTG +
Preference number: 5 (lower is better)
Translates to: HFILVRTLGHNSHGPEIFVTTMG*GQSALV
Trigger: CACCAGCGCTGACTGCCCCAAGCCCATGGTGGTGAC...AAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCTCACCAAGATGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCTTTTGGGGTCCCGCTaGGTGAGTTCGCAGGGAGCA +
Preference number: 5 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSLLGSR*VSSQGA
Trigger: TGCTCCCTGCGAACTCACCAAGCGGGACCCCAAAAG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAAATAAATACGCCCTGGCCTCCTGGGTGGGGGCCTCCAGCAGGGTGACATGGTTCTTCTTTCGAAACTaGAGCTGGTTGAACTTGAGC +
Preference number: 5 (lower is better)
Translates to: GNKYALASWVGASSRVTWFFFRN*SWLNLS
Trigger: GCTCAAGTTCAACCAGCTCAAGTTTCGAAAGAAGAA...CCATGTCACCCTGCTGGAGGCCCCCACCCAGGAGGCCAGGGCGTATTTATTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TTTCAAAGAAAAATGGGCCCACAGATCAGGAGTATTGCATACCCTTCCTGGGATAGTGCTGTGCAGGTGTaGGACGGCCTCCTTGGCGCC +
Preference number: 5 (lower is better)
Translates to: FQRKMGPQIRSIAYPSWDSAVQV*DGLLGA
Trigger: GGCGCCAAGGAGGCCGTCCAACACCTGCACAGCACT...ATCCCAGGAAGGGTATGCAATACTCCTGATCTGTGGGCCCATTTTTCTTTGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCAGTGCTGTGCAGGTGTaGGACGGCCTCCTTGGCGCC +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPSAVQV*DGLLGA
Trigger: GGCGCCAAGGAGGCCGTCCAACACCTGCACAGCACT...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGCGTGATTGGGGTGCCTaGTCCATAGGAGTTGGGTGT +
Preference number: 5 (lower is better)
Translates to: QTDGGRMESQIHKDTKPARDWGA*SIGVGC
Trigger: ACACCCAACTCCTATGGACAAGGCACCCCAATCACG...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTGCCATCCGCTCCTTCTaGTCCCACCATTCGTCAAAG +
Preference number: 5 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIAIRSF*SHHSSK
Trigger: CTTTGACGAATGGTGGGACAAGAAGGAGCGGATGGC...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTTTCGGTCTTTGGGCTTaGGCCTGTCCTCGTCCTTGT +
Preference number: 5 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIFGLWA*ACPRPC
Trigger: ACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAA...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CAGACGGACGGAGGGAGAATGGAAAGCCAGATACATAAGGATACAAAGCCTGCGTTCGGTCTTTGGGCTTaGGCCTGTCCTCGTCCTTGT +
Preference number: 5 (lower is better)
Translates to: QTDGGRMESQIHKDTKPAFGLWA*ACPRPC
Trigger: ACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAA...CGCAGGCTTTGTATCCTTATGTATCTGGCTTTCCATTCTCCCTCCGTCCGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCATCTCGCCGACCGGTaGGGAGGGGACAGACAGGCA +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPHLADR*GGDRQA
Trigger: TGCCTGTCTGTCCCCTCCCAACCGGTCGGCGAGATG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCACGGTCCCCGCACCTaGGCCAGGTCCACGTACTCT +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPHGPRT*ARSTYS
Trigger: AGAGTACGTGGACCTGGCCAAGGTGCGGGGACCGTG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCTGGCACGGCTGCTGTaGAGGTATCTCAGCTTGTCC +
Preference number: 5 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSLARLL*RYLSLS
Trigger: GGACAAGCTGAGATACCTCAACAGCAGCCGTGCCAG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCATGAAGCGTGCAAAGTaGCCGCACTTGGTGGCGTCG +
Preference number: 5 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSMKRAK*PHLVAS
Trigger: CGACGCCACCAAGTGCGGCAACTTTGCACGCTTCAT...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCGACAGGCTGCCATCTTaGAGGCGCTTCAGAGCATCT +
Preference number: 5 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSDRLPS*RRFRAS
Trigger: AGATGCTCTGAAGCGCCTCAAAGATGGCAGCCTGTC...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCGTCCTGGGCCACTGTaGCTCAGGGAGAATGGGCTC +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPRPGPL*LRENGL
Trigger: GAGCCCATTCTCCCTGAGCAACAGTGGCCCAGGACG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp AGGACTCTGGGTCACAACAGTCACGGTCCAGAAATATTTACATGTCTGCTTTGCCTGGCACGGCTGCTGTaGAGGTATCTCAGCTTGTCC +
Preference number: 5 (lower is better)
Translates to: RTLGHNSHGPEIFTCLLCLARLL*RYLSLS
Trigger: GGACAAGCTGAGATACCTCAACAGCAGCCGTGCCAG...GCAAAGCAGACATGTAAATATTTCTGGACCGTGACTGTTGTGACCCAGAGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163030.9
CDS-3UTR CAA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCCGAAACTTGAGCTGGTaGAACTTGAGCAGGTCGCTG +
Preference number: 5 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSRNLSW*NLSRSL
Trigger: CAGCGACCTGCTCAAGTTCAACCAGCTCAAGTTTCG...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCATCTCCACCGGGCGGTaGCTGGACATGGCCAGGCTG +
Preference number: 5 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFISTGR*LDMARL
Trigger: CAGCCTGGCCATGTCCAGCAACCGCCCGGTGGAGAT...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCCTCATCCACAGAGGTaGAAGGCCGTAGCCGCTTCT +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPPHPQR*KAVAAS
Trigger: AGAAGCGGCTACGGCCTTCAACCTCTGTGGATGAGG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCCCGTGGCTGCAGCCATaGCAGTCTCTTTCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPPWLQP*QSLSPP
Trigger: AGGAGGAGAAAGAGACTGCAATGGCTGCAGCCACGG...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTTCGTGCCGCTTCTaGGGTGGCCGCCGCCACGGT +
Preference number: 5 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLSSCRF*GGRRHG
Trigger: ACCGTGGCGGCGGCCACCCAAGAAGCGGCACGAAGA...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGACACCCTGGGAGGCTCCATCGTTGCTGGCATCCGAATGAGAAAGTAAACATTTACGTGATCTCCTCGTaGACGTTGATGTGCTGCTTA +
Preference number: 5 (lower is better)
Translates to: GHPGRLHRCWHPNEKVNIYVISS*TLMCCL
Trigger: TAAGCAGCACATCAACGTCAACGAGGAGATCACGTA...AATGTTTACTTTCTCATTCGGATGCCAGCAACGATGGAGCCTCCCAGGGTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCGTGGCAAAGACCACCTaGGCAATGCCCAGGTGTTTC +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPVAKTT*AMPRCF
Trigger: GAAACACCTGGGCATTGCCAAGGTGGTCTTTGCCAC...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCTACGTGATCTCCTCGTaGACGTTGATGTGCTGCTTA +
Preference number: 5 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSYVISS*TLMCCL
Trigger: TAAGCAGCACATCAACGTCAACGAGGAGATCACGTA...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp TTCAGAGCTCACTATGTTGACCAGGCTAGCTCGCAGAAATTCACCTGCCTCCATCACTGGGCACTTACATaGCAGCTGTGGTTAATGAAG +
Preference number: 5 (lower is better)
Translates to: FRAHYVDQASSQKFTCLHHWALT*QLWLMK
Trigger: CTTCATTAACCACAGCTGCAATGTAAGTGCCCAGTG...ATGGAGGCAGGTGAATTTCTGCGAGCTAGCCTGGTCAACATAGTGAGCTCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162839.3
CDS-3UTR CAA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTTGGGGTCCCGCTaGGTGAGTTCGCAGGGAGCA +
Preference number: 5 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFLLGSR*VSSQGA
Trigger: TGCTCCCTGCGAACTCACCAAGCGGGACCCCAAAAG...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCTGGTTGTCCAGCTCCTaGAAGGGTAGCTTGGTGGAT +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPWLSSS*KGSLVD
Trigger: ATCCACCAAGCTACCCTTCAAGGAGCTGGACAACCA...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTCACGGTCCCCGCACCTaGGCCAGGTCCACGTACTCT +
Preference number: 5 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSHGPRT*ARSTYS
Trigger: AGAGTACGTGGACCTGGCCAAGGTGCGGGGACCGTG...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CGTGCGAAGAGCATCTATAAAAACGGAAAGACGCAGGTGGAGAGACAGAGAAGCAAGTTTTCACGGACGTaGTCATTCAGCTTGGCAAAT +
Preference number: 5 (lower is better)
Translates to: RAKSIYKNGKTQVERQRSKFSRT*SFSLAN
Trigger: ATTTGCCAAGCTGAATGACAACGTCCGTGAAAACTT...GCTTCTCTGTCTCTCCACCTGCGTCTTTCCGTTTTTATAGATGCTCTTCGCACG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCTCCACGTGGATAATGTaGCCCATGACAGAAGTGCTG +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPSTWIM*PMTEVL
Trigger: CAGCACTTCTGTCATGGGCAACATTATCCACGTGGA...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTCGCACACCCACGCTTTaGGGGTCCCGCTTGGTGAGT +
Preference number: 5 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSRTPTL*GSRLVS
Trigger: ACTCACCAAGCGGGACCCCAAAAGCGTGGGTGTGCG...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCCGTGGCTGCAGCCATaGCAGTCTCTTTCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFPWLQP*QSLSPP
Trigger: AGGAGGAGAAAGAGACTGCAATGGCTGCAGCCACGG...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTGAGCAGCATGTCCCCTaGTGTGTTGGGGCCTGGCTC +
Preference number: 5 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSEQHVP*CVGAWL
Trigger: GAGCCAGGCCCCAACACACAAGGGGACATGCTGCTC...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTCAAATGTCACCTGCTTaGGAGGCACAGGGCCCACGT +
Preference number: 5 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLQMSPA*EAQGPR
Trigger: ACGTGGGCCCTGTGCCTCCAAAGCAGGTGACATTTG...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCGTGGCAAAGACCACCTaGGCAATGCCCAGGTGTTTC +
Preference number: 5 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFVAKTT*AMPRCF
Trigger: GAAACACCTGGGCATTGCCAAGGTGGTCTTTGCCAC...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCGTGATTGGGGTGCCTaGTCCATAGGAGTTGGGTGT +
Preference number: 5 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFRDWGA*SIGVGC
Trigger: ACACCCAACTCCTATGGACAAGGCACCCCAATCACG...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTCCTCATCCACAGAGGTaGAAGGCCGTAGCCGCTTCT +
Preference number: 5 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLPHPQR*KAVAAS
Trigger: AGAAGCGGCTACGGCCTTCAACCTCTGTGGATGAGG...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCTTGAGGTATCTCAGCTaGTCCTTCTTGTCGATGGTG +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPLRYLS*SFLSMV
Trigger: CACCATCGACAAGAAGGACAAGCTGAGATACCTCAA...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTCATCCTTGTCGGAGCTaGAGGAGGATGAGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSHPCRS*RRMRVR
Trigger: CCTCACCCTCATCCTCCTCAAGCTCCGACAAGGATG...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp CATCTTCCTTTCTCTAGGAGAAACAACCTGCTCGCTATGGAAATAAATACGCCCAAGTTTTCACGGACGTaGTCATTCAGCTTGGCAAAT +
Preference number: 5 (lower is better)
Translates to: HLPFSRRNNLLAMEINTPKFSRT*SFSLAN
Trigger: ATTTGCCAAGCTGAATGACAACGTCCGTGAAAACTT...GGGCGTATTTATTTCCATAGCGAGCAGGTTGTTTCTCCTAGAGAAAGGAAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GGAGCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCACCTCCCCATACTTTTaGCACATGTCCCTTAGGAAG +
Preference number: 5 (lower is better)
Translates to: GAVQDGDLNFNIISKTIFTSPYF*HMSLRK
Trigger: CTTCCTAAGGGACATGTGCAAAAAGTATGGGGAGGT...GAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTTCATCGATCTTGAATTaGGGCACAGACAGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSSSILN*GTDSSS
Trigger: GCTGGAGCTGTCTGTGCCCAAATTCAAGATCGATGA...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTATGCCCAGGTGTTTCTaGGTCTTCGGGTTATACAAG +
Preference number: 5 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLMPRCF*VFGLYK
Trigger: CTTGTATAACCCGAAGACCAAGAAACACCTGGGCAT...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GCTGTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTTCTTCTTTCGAAACTaGAGCTGGTTGAACTTGAGC +
Preference number: 5 (lower is better)
Translates to: AVQDGDLNFNIISKTIFLFFFRN*SWLNLS
Trigger: GCTCAAGTTCAACCAGCTCAAGTTTCGAAAGAAGAA...AAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGACAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS-3UTR CAA 90 bp GTCCAAGATGGAGATCTGAATTTTAATATCATTTCCAAGACCATCTTCCTTTCTAAGTTTTCACGGACGTaGTCATTCAGCTTGGCAAAT +
Preference number: 5 (lower is better)
Translates to: VQDGDLNFNIISKTIFLSKFSRT*SFSLAN
Trigger: ATTTGCCAAGCTGAATGACAACGTCCGTGAAAACTT...AGAAAGGAAGATGGTCTTGGAAATGATATTAAAATTCAGATCTCCATCTTGGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GGGCTCTGGGGTCTCAGGCTCAGGCGGTGGGCTGGGTaGCCGGAGCAGTCGAGGGGGCGGCAATGGCGGCTG +
Preference number: 6 (lower is better)
Translates to: GLWGLRLRRWAG*PEQSRGRQWRL
Trigger: CAGCCGCCATTGCCGCCCCCTCGACTGCTCCGGCCACCCAGCCCACCGCCTGAGCCTGAGACCCCAGAGCCC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp ACAGTCCCGGTGGGAAGGGAGGTAGCGGCGGAAGGATaGGTGGGGGCGGGACACCCGGGGGCGCTGGCAAGG +
Preference number: 6 (lower is better)
Translates to: TVPVGREVAAEG*VGAGHPGALAR
Trigger: CCTTGCCAGCGCCCCCGGGTGTCCCGCCCCCACCCATCCTTCCGCCGCTACCTCCCTTCCCACCGGGACTGT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 72 bp GGTGGCCGGAGCAGTCGAGGGGGCGGCAATGGCGGCTaGAAGGGCAAGGAGAGCATAGGAGGGGGCTCGGGC +
Preference number: 6 (lower is better)
Translates to: GGRSSRGGGNGG*KGKESIGGGSG
Trigger: GCCCGAGCCCCCTCCTATGCTCTCCTTGCCCTTGCAGCCGCCATTGCCGCCCCCTCGACTGCTCCGGCCACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 72 bp GGTTCAGGTGAGGCCGATGGGGCCACCAGGTCTTCGTaGCGCTTCTTGGGTGGCCGCCGCCACGGTCCCCGC +
Preference number: 6 (lower is better)
Translates to: GSGEADGATRSS*RFLGGRRHGPR
Trigger: GCGGGGACCGTGGCGGCGGCCACCCAAGAAGCGGCACGAAGACCTGGTGGCCCCATCGGCCTCACCTGAACC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp AGGCCGATGGGGCCACCAGGTCTTCGTGCCGCTTCTTaGGTGGCCGCCGCCACGGTCCCCGCACCTTGGCCA +
Preference number: 6 (lower is better)
Translates to: RPMGPPGLRAAS*VAAATVPAPWP
Trigger: TGGCCAAGGTGCGGGGACCGTGGCGGCGGCCACCCAAGAAGCGGCACGAAGACCTGGTGGCCCCATCGGCCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp GGTTCAGGTGAGGCCGATGGGGCCACCAGGTCTTCGTGCCGCTTCTaGGGTGGCCGCCGCCACGGTCCCCGCACCTTGGCCAGGTCCACG +
Preference number: 6 (lower is better)
Translates to: GSGEADGATRSSCRF*GGRRHGPRTLARST
Trigger: CGTGGACCTGGCCAAGGTGCGGGGACCGTGGCGGCGGCCACCCAAGAAGCGGCACGAAGACCTGGTGGCCCCATCGGCCTCACCTGAACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 72 bp CCTCCGGAACTCCCCACTGTCGCGGCTCCCAAAGGCTaGTGTGGCGGTGGGCTCCTCAGGGGGTGGCGGGAA +
Preference number: 6 (lower is better)
Translates to: PPELPTVAAPKG*CGGGLLRGWRE
Trigger: TTCCCGCCACCCCCTGAGGAGCCCACCGCCACAGCAGCCTTTGGGAGCCGCGACAGTGGGGAGTTCCGGAGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp TGGGCTGGGTGGCCGGAGCAGTCGAGGGGGCGGCAATaGCGGCTGCAAGGGCAAGGAGAGCATAGGAGGGGG +
Preference number: 6 (lower is better)
Translates to: WAGWPEQSRGRQ*RLQGQGEHRRG
Trigger: CCCCCTCCTATGCTCTCCTTGCCCTTGCAGCCGCCATTGCCGCCCCCTCGACTGCTCCGGCCACCCAGCCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GGGAAGTGGGAGGGGCAGGCCAGTTTCCAGGAGCACTaGGGAGGCCAGGGGGCCGGTACGCTCATCTCGCCG +
Preference number: 6 (lower is better)
Translates to: GKWEGQASFQEH*GGQGAGTLISP
Trigger: CGGCGAGATGAGCGTACCGGCCCCCTGGCCTCCCCAGTGCTCCTGGAAACTGGCCTGCCCCTCCCACTTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GCGGTGGCCGGACCAAAGGCCCATCCAAGGACAGCATaGACGGTGGGGATCTCCGGGGCCGGCCTGGCTTCC +
Preference number: 6 (lower is better)
Translates to: AVAGPKAHPRTA*TVGISGAGLAS
Trigger: GGAAGCCAGGCCGGCCCCGGAGATCCCCACCGTCCATGCTGTCCTTGGATGGGCCTTTGGTCCGGCCACCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp GGCCGTCCTGGCCGGCGTCGCACACCCACGCTTTTGGGGTCCCGCTaGGTGAGTTCGCAGGGAGCATCAGCTATGTCCCGGTCCCGCTCC +
Preference number: 6 (lower is better)
Translates to: GRPGRRRTPTLLGSR*VSSQGASAMSRSRS
Trigger: GGAGCGGGACCGGGACATAGCTGATGCTCCCTGCGAACTCACCAAGCGGGACCCCAAAAGCGTGGGTGTGCGACGCCGGCCAGGACGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 72 bp CTCCCTCATGGGGCCTCGTGGGCCCAGAGGCACTTCTaGCCTGTCCTGCTCAAAGTCCTGGCCACCCGCTGG +
Preference number: 6 (lower is better)
Translates to: LPHGASWAQRHF*PVLLKVLATRW
Trigger: CCAGCGGGTGGCCAGGACTTTGAGCAGGACAGGGCAGAAGTGCCTCTGGGCCCACGAGGCCCCATGAGGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GGCCAGGGGGCCGGTACGCTCATCTCGCCGACCGGTTaGGAGGGGACAGACAGGCAGAAGCAAGGGTCCACT +
Preference number: 6 (lower is better)
Translates to: GQGAGTLISPTG*EGTDRQKQGST
Trigger: AGTGGACCCTTGCTTCTGCCTGTCTGTCCCCTCCCAACCGGTCGGCGAGATGAGCGTACCGGCCCCCTGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp AGGCCAGGGGGCCGGTACGCTCATCTCGCCGACCGGTaGGGAGGGGACAGACAGGCAGAAGCAAGGGTCCAC +
Preference number: 6 (lower is better)
Translates to: RPGGRYAHLADR*GGDRQAEARVH
Trigger: GTGGACCCTTGCTTCTGCCTGTCTGTCCCCTCCCAACCGGTCGGCGAGATGAGCGTACCGGCCCCCTGGCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 72 bp GGCACGGAGGGGTCAAACTTGGGCAGGGGCGGCCAATaGTGTCCACGTCCTGGGCCACTGTTGCTCAGGGAG +
Preference number: 6 (lower is better)
Translates to: GTEGSNLGRGGQ*CPRPGPLLLRE
Trigger: CTCCCTGAGCAACAGTGGCCCAGGACGTGGACAGCATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCGTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GGAGTCCAGGCTGTCATGGGGCTTCTCTGGCCCGGCTaGAGAGGACTCCAGAGTAGGGGTGCCAGGGCTGTC +
Preference number: 6 (lower is better)
Translates to: GVQAVMGLLWPG*RGLQSRGARAV
Trigger: GACAGCCCTGGCACCCCTACTCTGGAGTCCTCTCCAGCCGGGCCAGAGAAGCCCCATGACAGCCTGGACTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GTGCGGGTCCTCCTGACGTGGTATGTAGCCTGGTGGTaGCACGGAGGGGTCAAACTTGGGCAGGGGCGGCCA +
Preference number: 6 (lower is better)
Translates to: VRVLLTWYVAWW*HGGVKLGQGRP
Trigger: TGGCCGCCCCTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGGCTACATACCACGTCAGGAGGACCCGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GGGGCTCTGGGCTCCCTTCCAGCTTCCGAGCACCCATaGGCAATGGAGGCTCCTCCAGCTCAGGAGCCTGCA +
Preference number: 6 (lower is better)
Translates to: GALGSLPASEHP*AMEAPPAQEPA
Trigger: TGCAGGCTCCTGAGCTGGAGGAGCCTCCATTGCCCATGGGTGCTCGGAAGCTGGAAGGGAGCCCAGAGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp CGCCGCTCTGAGCCTGCCCGAGTAGAGGCATGGGGCTaGGCTGGGATACTCATACCCTGGGTGTCCATGGGG +
Preference number: 6 (lower is better)
Translates to: RRSEPARVEAWG*AGILIPWVSMG
Trigger: CCCCATGGACACCCAGGGTATGAGTATCCCAGCCCAGCCCCATGCCTCTACTCGGGCAGGCTCAGAGCGGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp GGCCGGCGTCGCACACCCACGCTTTTGGGGTCCCGCTaGGTGAGTTCGCAGGGAGCATCAGCTATGTCCCGG +
Preference number: 6 (lower is better)
Translates to: GRRRTPTLLGSR*VSSQGASAMSR
Trigger: CCGGGACATAGCTGATGCTCCCTGCGAACTCACCAAGCGGGACCCCAAAAGCGTGGGTGTGCGACGCCGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp TCTTCGTGCCGCTTCTTGGGTGGCCGCCGCCACGGTCCCCGCACCTaGGCCAGGTCCACGTACTCTTCAGTGACCTCATCTCGGCGAGGT +
Preference number: 6 (lower is better)
Translates to: SSCRFLGGRRHGPRT*ARSTYSSVTSSRRG
Trigger: ACCTCGCCGAGATGAGGTCACTGAAGAGTACGTGGACCTGGCCAAGGTGCGGGGACCGTGGCGGCGGCCACCCAAGAAGCGGCACGAAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 72 bp GGCGTCGCACACCCACGCTTTTGGGGTCCCGCTTGGTaGGTTCGCAGGGAGCATCAGCTATGTCCCGGTCCC +
Preference number: 6 (lower is better)
Translates to: GVAHPRFWGPAW*VRREHQLCPGP
Trigger: GGGACCGGGACATAGCTGATGCTCCCTGCGAACTCACCAAGCGGGACCCCAAAAGCGTGGGTGTGCGACGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 72 bp TCACAGCTGCCGGTGAAGGAGGACAAGAGGCGCCTCTaGTCAGACCGCCGCTCTGAGCCTGCCCGAGTAGAG +
Preference number: 6 (lower is better)
Translates to: SQLPVKEDKRRL*SDRRSEPARVE
Trigger: CTCTACTCGGGCAGGCTCAGAGCGGCGGTCTGAGCAGAGGCGCCTCTTGTCCTCCTTCACCGGCAGCTGTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp CTCAATGCGGGAGTCCAGGCTGTCATGGGGCTTCTCTaGCCCGGCTGGAGAGGACTCCAGAGTAGGGGTGCC +
Preference number: 6 (lower is better)
Translates to: LNAGVQAVMGLL*PGWRGLQSRGA
Trigger: GGCACCCCTACTCTGGAGTCCTCTCCAGCCGGGCCAGAGAAGCCCCATGACAGCCTGGACTCCCGCATTGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GTATGTAGCCTGGTGGTGGCACGGAGGGGTCAAACTTaGGCAGGGGCGGCCAATGCTGTCCACGTCCTGGGC +
Preference number: 6 (lower is better)
Translates to: VCSLVVARRGQT*AGAANAVHVLG
Trigger: GCCCAGGACGTGGACAGCATTGGCCGCCCCTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGGCTACATAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp CTTGTGCGGGTCCTCCTGACGTGGTATGTAGCCTGGTaGTGGCACGGAGGGGTCAAACTTGGGCAGGGGCGG +
Preference number: 6 (lower is better)
Translates to: LVRVLLTWYVAW*WHGGVKLGQGR
Trigger: CCGCCCCTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGGCTACATACCACGTCAGGAGGACCCGCACAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GGCCTTGTGCGGGTCCTCCTGACGTGGTATGTAGCCTaGTGGTGGCACGGAGGGGTCAAACTTGGGCAGGGG +
Preference number: 6 (lower is better)
Translates to: GLVRVLLTWYVA*WWHGGVKLGQG
Trigger: CCCCTGCCCAAGTTTGACCCCTCCGTGCCACCACCAGGCTACATACCACGTCAGGAGGACCCGCACAAGGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GAGTTGAGCCTCCTCCGTCTCCCGGGCAGGGAGCTCTaGAGAGAGCAGCATGTCCCCTTGTGTGTTGGGGCC +
Preference number: 6 (lower is better)
Translates to: ELSLLRLPGREL*REQHVPLCVGA
Trigger: GGCCCCAACACACAAGGGGACATGCTGCTCTCTCCAGAGCTCCCTGCCCGGGAGACGGAGGAGGCTCAACTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp CCGGACCAAAGGCCCATCCAAGGACAGCATGGACGGTaGGGATCTCCGGGGCCGGCCTGGCTTCCTCTTGAT +
Preference number: 6 (lower is better)
Translates to: PDQRPIQGQHGR*GSPGPAWLPLD
Trigger: ATCAAGAGGAAGCCAGGCCGGCCCCGGAGATCCCCACCGTCCATGCTGTCCTTGGATGGGCCTTTGGTCCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GAGGAGAAGGTCCCTCCCAAGGGCAGGTCCTGGCGGTaGCCGGACCAAAGGCCCATCCAAGGACAGCATGGA +
Preference number: 6 (lower is better)
Translates to: EEKVPPKGRSWR*PDQRPIQGQHG
Trigger: TCCATGCTGTCCTTGGATGGGCCTTTGGTCCGGCCACCGCCAGGACCTGCCCTTGGGAGGGACCTTCTCCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp TCAGACCGCCGCTCTGAGCCTGCCCGAGTAGAGGCATaGGGCTGGGCTGGGATACTCATACCCTGGGTGTCC +
Preference number: 6 (lower is better)
Translates to: SDRRSEPARVEA*GWAGILIPWVS
Trigger: GGACACCCAGGGTATGAGTATCCCAGCCCAGCCCCATGCCTCTACTCGGGCAGGCTCAGAGCGGCGGTCTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp CGCTTCTTGGGTGGCCGCCGCCACGGTCCCCGCACCTaGGCCAGGTCCACGTACTCTTCAGTGACCTCATCT +
Preference number: 6 (lower is better)
Translates to: RFLGGRRHGPRT*ARSTYSSVTSS
Trigger: AGATGAGGTCACTGAAGAGTACGTGGACCTGGCCAAGGTGCGGGGACCGTGGCGGCGGCCACCCAAGAAGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 72 bp TGTCTTGGGAGAAGGGGGTCCCACCGCTATTGGGGGTaGCTGACGAGGAGCCAGAGCCGCAGCCTGCAGACA +
Preference number: 6 (lower is better)
Translates to: CLGRRGSHRYWG*LTRSQSRSLQT
Trigger: TGTCTGCAGGCTGCGGCTCTGGCTCCTCGTCAGTCACCCCCAATAGCGGTGGGACCCCCTTCTCCCAAGACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp AGAGATAGGAGGGTGTGGGCTGACGGCTGGAGTAGCTaGAATCCTGGGAGAAAGGGGTGCCCAGGCGAGGCG +
Preference number: 6 (lower is better)
Translates to: RDRRVWADGWSS*NPGRKGCPGEA
Trigger: CGCCTCGCCTGGGCACCCCTTTCTCCCAGGATTCCAGCTACTCCAGCCGTCAGCCCACACCCTCCTATCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp CCCATCCACCGTGGCCTTGTGCGGGTCCTCCTGACGTaGTATGTAGCCTGGTGGTGGCACGGAGGGGTCAAA +
Preference number: 6 (lower is better)
Translates to: PIHRGLVRVLLT*YVAWWWHGGVK
Trigger: TTTGACCCCTCCGTGCCACCACCAGGCTACATACCACGTCAGGAGGACCCGCACAAGGCCACGGTGGATGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp TGTCCACTTCCTCCTCTGTGCCCAAGGACTCCCTCATaGGGCCTCGTGGGCCCAGAGGCACTTCTGCCCTGT +
Preference number: 6 (lower is better)
Translates to: CPLPPLCPRTPS*GLVGPEALLPC
Trigger: ACAGGGCAGAAGTGCCTCTGGGCCCACGAGGCCCCATGAGGGAGTCCTTGGGCACAGAGGAGGAAGTGGACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp TGGGCTCCCTTCCAGCTTCCGAGCACCCATGGGCAATaGAGGCTCCTCCAGCTCAGGAGCCTGCATCTCAGG +
Preference number: 6 (lower is better)
Translates to: WAPFQLPSTHGQ*RLLQLRSLHLR
Trigger: CCTGAGATGCAGGCTCCTGAGCTGGAGGAGCCTCCATTGCCCATGGGTGCTCGGAAGCTGGAAGGGAGCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GGAGCTCTGGAGAGAGCAGCATGTCCCCTTGTGTGTTaGGGCCTGGCTCTTCTGGGGGCTCTGGGCTCCCTT +
Preference number: 6 (lower is better)
Translates to: GALERAACPLVC*GLALLGALGSL
Trigger: AAGGGAGCCCAGAGCCCCCAGAAGAGCCAGGCCCCAACACACAAGGGGACATGCTGCTCTCTCCAGAGCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp ACCACCCGGGGATCTTCCACGATCTCCACCGGGCGGTaGCTGGACATGGCCAGGCTGAAATGCTGCCCATCG +
Preference number: 6 (lower is better)
Translates to: TTRGSSTISTGR*LDMARLKCCPS
Trigger: CGATGGGCAGCATTTCAGCCTGGCCATGTCCAGCAACCGCCCGGTGGAGATCGTGGAAGATCCCCGGGTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp GAAAGGGGTGCCCAGGCGAGGCGTGATTGGGGTGCCTaGTCCATAGGAGTTGGGTGTGTCCAGGCGGCAGCT +
Preference number: 6 (lower is better)
Translates to: ERGAQARRDWGA*SIGVGCVQAAA
Trigger: AGCTGCCGCCTGGACACACCCAACTCCTATGGACAAGGCACCCCAATCACGCCTCGCCTGGGCACCCCTTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp ACGGGGGTCAGTGAGGCCTTGGCCATCCGCTCCTTCTaGTCCCACCATTCGTCAAAGGCCCGGAAGGCCACC +
Preference number: 6 (lower is better)
Translates to: TGVSEALAIRSF*SHHSSKARKAT
Trigger: GGTGGCCTTCCGGGCCTTTGACGAATGGTGGGACAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCCCCGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp CCGGACTTCACGGGGGTCAGTGAGGCCTTGGCCATCCGCTCCTTCTaGTCCCACCATTCGTCAAAGGCCCGGAAGGCCACCACCTCTACC +
Preference number: 6 (lower is better)
Translates to: PDFTGVSEALAIRSF*SHHSSKARKATTST
Trigger: GGTAGAGGTGGTGGCCTTCCGGGCCTTTGACGAATGGTGGGACAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCCCCGTGAAGTCCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp TGCCCCACGACTCCAGCAGACAGGAGGCGATTCGGTCTTTGGGCTTaGGCCTGTCCTCGTCCTTGTGCTCACCGGACTTCACGGGGGTCA +
Preference number: 6 (lower is better)
Translates to: CPTTPADRRRFGLWA*ACPRPCAHRTSRGS
Trigger: TGACCCCCGTGAAGTCCGGTGAGCACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTCCTGTCTGCTGGAGTCGTGGGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp TGGTCACCAGAAGAGGCTGTGTCCGGTGGCTCCTTCCTCTTGACCTaGAAGGAGGGCAAGCGAATGGCGCCCCGCAGTCCAATGCCCAGG +
Preference number: 6 (lower is better)
Translates to: WSPEEAVSGGSFLLT*KEGKRMAPRSPMPR
Trigger: CCTGGGCATTGGACTGCGGGGCGCCATTCGCTTGCCCTCCTTCAAGGTCAAGAGGAAGGAGCCACCGGACACAGCCTCTTCTGGTGACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 72 bp CACCAACAGGGAGGGTCTGAGGGGTGTACCGGCCGGTaGCCAACAGCTCGTAGAAGCGCATGCGAGTTTCCC +
Preference number: 6 (lower is better)
Translates to: HQQGGSEGCTGR*PTARRSACEFP
Trigger: GGGAAACTCGCATGCGCTTCTACGAGCTGTTGGTCACCGGCCGGTACACCCCTCAGACCCTCCCTGTTGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 72 bp CCCCACTGGCCACCCAGCACATGGCTCATGTCCACCTaGATCACAGGAAACAGTCCCGGTGGGAAGGGAGGT +
Preference number: 6 (lower is better)
Translates to: PHWPPSTWLMST*ITGNSPGGKGG
Trigger: ACCTCCCTTCCCACCGGGACTGTTTCCTGTGATGCAGGTGGACATGAGCCATGTGCTGGGTGGCCAGTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp AAACTTGGGCAGGGGCGGCCAATGCTGTCCACGTCCTaGGCCACTGTTGCTCAGGGAGAATGGGCTCCGGTA +
Preference number: 6 (lower is better)
Translates to: KLGQGRPMLSTS*ATVAQGEWAPV
Trigger: TACCGGAGCCCATTCTCCCTGAGCAACAGTGGCCCAGGACGTGGACAGCATTGGCCGCCCCTGCCCAAGTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp CCCACGACTCCAGCAGACAGGAGGCGATTCGGTCTTTaGGCTTTGGCCTGTCCTCGTCCTTGTGCTCACCGG +
Preference number: 6 (lower is better)
Translates to: PTTPADRRRFGL*ALACPRPCAHR
Trigger: CCGGTGAGCACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTCCTGTCTGCTGGAGTCGTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp GCGATTCGGTCTTTGGGCTTTGGCCTGTCCTCGTCCTaGTGCTCACCGGACTTCACGGGGGTCAGTGAGGCC +
Preference number: 6 (lower is better)
Translates to: AIRSLGFGLSSS*CSPDFTGVSEA
Trigger: GGCCTCACTGACCCCCGTGAAGTCCGGTGAGCACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAATCGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp CCCCACGACTCCAGCAGACAGGAGGCGATTCGGTCTTaGGGCTTTGGCCTGTCCTCGTCCTTGTGCTCACCG +
Preference number: 6 (lower is better)
Translates to: PHDSSRQEAIRS*GFGLSSSLCSP
Trigger: CGGTGAGCACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTCCTGTCTGCTGGAGTCGTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp GAAGAGGCTGTGTCCGGTGGCTCCTTCCTCTTGACCTaGAAGGAGGGCAAGCGAATGGCGCCCCGCAGTCCA +
Preference number: 6 (lower is better)
Translates to: EEAVSGGSFLLT*KEGKRMAPRSP
Trigger: TGGACTGCGGGGCGCCATTCGCTTGCCCTCCTTCAAGGTCAAGAGGAAGGAGCCACCGGACACAGCCTCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp GAAGCCGGGCTGCGAGTTAGTGCCAAAGTGGCTGAGCGGGGAGAGTaGGGAGGAGGAGGAGGAGATGGGGCTGCCTTCCATCTGTATCTC +
Preference number: 6 (lower is better)
Translates to: EAGLRVSAKVAERGE*GGGGGDGAAFHLYL
Trigger: GAGATACAGATGGAAGGCAGCCCCATCTCCTCCTCCTCCTCCCAACTCTCCCCGCTCAGCCACTTTGGCACTAACTCGCAGCCCGGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp AGACAGGAGGCGATTCGGTCTTTGGGCTTTGGCCTGTCCTCGTCCTaGTGCTCACCGGACTTCACGGGGGTCAGTGAGGCCTTGGCCATC +
Preference number: 6 (lower is better)
Translates to: RQEAIRSLGFGLSSS*CSPDFTGVSEALAI
Trigger: GATGGCCAAGGCCTCACTGACCCCCGTGAAGTCCGGTGAGCACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTCCTGTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp TCACCCTTGCCCCACGACTCCAGCAGACAGGAGGCGATTCGGTCTTaGGGCTTTGGCCTGTCCTCGTCCTTGTGCTCACCGGACTTCACG +
Preference number: 6 (lower is better)
Translates to: SPLPHDSSRQEAIRS*GFGLSSSLCSPDFT
Trigger: CGTGAAGTCCGGTGAGCACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTCCTGTCTGCTGGAGTCGTGGGGCAAGGGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp CGCTTCTGGTCACCAGAAGAGGCTGTGTCCGGTGGCTCCTTCCTCTaGACCTTGAAGGAGGGCAAGCGAATGGCGCCCCGCAGTCCAATG +
Preference number: 6 (lower is better)
Translates to: RFWSPEEAVSGGSFL*TLKEGKRMAPRSPM
Trigger: CATTGGACTGCGGGGCGCCATTCGCTTGCCCTCCTTCAAGGTCAAGAGGAAGGAGCCACCGGACACAGCCTCTTCTGGTGACCAGAAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 72 bp GGTGGAGTATGGGCAAACGTGGTGGCATCCTGCGACTaGGCCTTGAAGGGAGTCCCGCTGCTGCCAACTGTC +
Preference number: 6 (lower is better)
Translates to: GGVWANVVASCD*ALKGVPLLPTV
Trigger: GACAGTTGGCAGCAGCGGGACTCCCTTCAAGGCTCAGTCGCAGGATGCCACCACGTTTGCCCATACTCCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 72 bp CCCATGGGCAATGGAGGCTCCTCCAGCTCAGGAGCCTaGATCTCAGGGACTTCGTCCTCAGCCTCAATGTCC +
Preference number: 6 (lower is better)
Translates to: PMGNGGSSSSGA*ISGTSSSASMS
Trigger: GGACATTGAGGCTGAGGACGAAGTCCCTGAGATGCAGGCTCCTGAGCTGGAGGAGCCTCCATTGCCCATGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp ATCCTGGGAGAAAGGGGTGCCCAGGCGAGGCGTGATTaGGGTGCCTTGTCCATAGGAGTTGGGTGTGTCCAG +
Preference number: 6 (lower is better)
Translates to: ILGERGAQARRD*GALSIGVGCVQ
Trigger: CTGGACACACCCAACTCCTATGGACAAGGCACCCCAATCACGCCTCGCCTGGGCACCCCTTTCTCCCAGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp GACATGGGCATGCCACCCCACTGGCCACCCAGCACATaGCTCATGTCCACCTGCATCACAGGAAACAGTCCC +
Preference number: 6 (lower is better)
Translates to: DMGMPPHWPPST*LMSTCITGNSP
Trigger: GGGACTGTTTCCTGTGATGCAGGTGGACATGAGCCATGTGCTGGGTGGCCAGTGGGGTGGCATGCCCATGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp CCCAGAGGCACTTCTGCCCTGTCCTGCTCAAAGTCCTaGCCACCCGCTGGAGGCATGCTCTCTTCTGCCATA +
Preference number: 6 (lower is better)
Translates to: PRGTSALSCSKS*PPAGGMLSSAI
Trigger: TATGGCAGAAGAGAGCATGCCTCCAGCGGGTGGCCAGGACTTTGAGCAGGACAGGGCAGAAGTGCCTCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp GAGCCAGAGCCGCAGCCTGCAGACAGGCTGCCATCTTaGAGGCGCTTCAGAGCATCTGATAGCTGCAGGGTC +
Preference number: 6 (lower is better)
Translates to: EPEPQPADRLPS*RRFRASDSCRV
Trigger: GACCCTGCAGCTATCAGATGCTCTGAAGCGCCTCAAAGATGGCAGCCTGTCTGCAGGCTGCGGCTCTGGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp CTGCGAGTTAGTGCCAAAGTGGCTGAGCGGGGAGAGTaGGGAGGAGGAGGAGGAGATGGGGCTGCCTTCCAT +
Preference number: 6 (lower is better)
Translates to: LRVSAKVAERGE*GGGGGDGAAFH
Trigger: ATGGAAGGCAGCCCCATCTCCTCCTCCTCCTCCCAACTCTCCCCGCTCAGCCACTTTGGCACTAACTCGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp ACTGACGAGGAGCCAGAGCCGCAGCCTGCAGACAGGCTGCCATCTTaGAGGCGCTTCAGAGCATCTGATAGCTGCAGGGTCTCGCTCACA +
Preference number: 6 (lower is better)
Translates to: TDEEPEPQPADRLPS*RRFRASDSCRVSLT
Trigger: TGTGAGCGAGACCCTGCAGCTATCAGATGCTCTGAAGCGCCTCAAAGATGGCAGCCTGTCTGCAGGCTGCGGCTCTGGCTCCTCGTCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp GGTCCCGCTCCCGCTCTGACTCTTCATCTTCCTCATCCACAGAGGTaGAAGGCCGTAGCCGCTTCTGGTCACCAGAAGAGGCTGTGTCCG +
Preference number: 6 (lower is better)
Translates to: GPAPALTLHLPHPQR*KAVAASGHQKRLCP
Trigger: CGGACACAGCCTCTTCTGGTGACCAGAAGCGGCTACGGCCTTCAACCTCTGTGGATGAGGAAGATGAAGAGTCAGAGCGGGAGCGGGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 72 bp TGGAATCCTGGGAGAAAGGGGTGCCCAGGCGAGGCGTaGTTGGGGTGCCTTGTCCATAGGAGTTGGGTGTGT +
Preference number: 6 (lower is better)
Translates to: WNPGRKGCPGEA*LGCLVHRSWVC
Trigger: ACACACCCAACTCCTATGGACAAGGCACCCCAATCACGCCTCGCCTGGGCACCCCTTTCTCCCAGGATTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 72 bp GGAGCCTCGGAAAGGAGCTGTGGCTCCAGCCACCGCTaGGTTGTGGACATAATGATGTTCGTGGCGGCGGTT +
Preference number: 6 (lower is better)
Translates to: GASERSCGSSHR*VVDIMMFVAAV
Trigger: AACCGCCGCCACGAACATCATTATGTCCACAACTCAGCGGTGGCTGGAGCCACAGCTCCTTTCCGAGGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 72 bp CCTCATCTTCATCAGAGTCAGGCAGTGGTGTGGGACTaGTGTCCTCTAGACCTGTGCTGGAGGGGCGCGAGG +
Preference number: 6 (lower is better)
Translates to: PHLHQSQAVVWD*CPLDLCWRGAR
Trigger: CCTCGCGCCCCTCCAGCACAGGTCTAGAGGACATCAGTCCCACACCACTGCCTGACTCTGATGAAGATGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS GCA 72 bp AAAGTCCTGGCCACCCGCTGGAGGCATGCTCTCTTCTaGCATAGCCACTACCGTGGCTGCAGCCATTGCAGT +
Preference number: 6 (lower is better)
Translates to: KVLATRWRHALF*HSHYRGCSHCS
Trigger: ACTGCAATGGCTGCAGCCACGGTAGTGGCTATGGCAGAAGAGAGCATGCCTCCAGCGGGTGGCCAGGACTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp CTTGTCCATAGGAGTTGGGTGTGTCCAGGCGGCAGCTaGAGTAAGCTGTGTCTTGGGAGAAGGGGGTCCCAC +
Preference number: 6 (lower is better)
Translates to: LVHRSWVCPGGS*SKLCLGRRGSH
Trigger: GTGGGACCCCCTTCTCCCAAGACACAGCTTACTCCAGCTGCCGCCTGGACACACCCAACTCCTATGGACAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp TGTGCTCACCGGACTTCACGGGGGTCAGTGAGGCCTTaGCCATCCGCTCCTTCTTGTCCCACCATTCGTCAA +
Preference number: 6 (lower is better)
Translates to: CAHRTSRGSVRP*PSAPSCPTIRQ
Trigger: TTGACGAATGGTGGGACAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCCCCGTGAAGTCCGGTGAGCACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp CTCCAGCAGACAGGAGGCGATTCGGTCTTTGGGCTTTaGCCTGTCCTCGTCCTTGTGCTCACCGGACTTCAC +
Preference number: 6 (lower is better)
Translates to: LQQTGGDSVFGL*PVLVLVLTGLH
Trigger: GTGAAGTCCGGTGAGCACAAGGACGAGGACAGGCCAAAGCCCAAAGACCGAATCGCCTCCTGTCTGCTGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp TCCTCATCCACAGAGGTTGAAGGCCGTAGCCGCTTCTaGTCACCAGAAGAGGCTGTGTCCGGTGGCTCCTTC +
Preference number: 6 (lower is better)
Translates to: SSSTEVEGRSRF*SPEEAVSGGSF
Trigger: GAAGGAGCCACCGGACACAGCCTCTTCTGGTGACCAGAAGCGGCTACGGCCTTCAACCTCTGTGGATGAGGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp TTCTGCCCTGTCCTGCTCAAAGTCCTGGCCACCCGCTaGAGGCATGCTCTCTTCTGCCATAGCCACTACCGT +
Preference number: 6 (lower is better)
Translates to: FCPVLLKVLATR*RHALFCHSHYR
Trigger: ACGGTAGTGGCTATGGCAGAAGAGAGCATGCCTCCAGCGGGTGGCCAGGACTTTGAGCAGGACAGGGCAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp ATGACAGAAGTGCTGTGCAGGTGTTGGACGGCCTCCTaGGCGCCCCTGACTGTGGCAAAGACCACCTTGGCA +
Preference number: 6 (lower is better)
Translates to: MTEVLCRCWTAS*APLTVAKTTLA
Trigger: TGCCAAGGTGGTCTTTGCCACAGTCAGGGGCGCCAAGGAGGCCGTCCAACACCTGCACAGCACTTCTGTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp TTGTGCTCACCGGACTTCACGGGGGTCAGTGAGGCCTaGGCCATCCGCTCCTTCTTGTCCCACCATTCGTCA +
Preference number: 6 (lower is better)
Translates to: LCSPDFTGVSEA*AIRSFLSHHSS
Trigger: TGACGAATGGTGGGACAAGAAGGAGCGGATGGCCAAGGCCTCACTGACCCCCGTGAAGTCCGGTGAGCACAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 72 bp TATGGGCAAACGTGGTGGCATCCTGCGACTGAGCCTTaGAGGGAGTCCCGCTGCTGCCAACTGTCCCAAAAG +
Preference number: 6 (lower is better)
Translates to: YGQTWWHPATEP*RESRCCQLSQK
Trigger: CTTTTGGGACAGTTGGCAGCAGCGGGACTCCCTTCAAGGCTCAGTCGCAGGATGCCACCACGTTTGCCCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp CGTCCTCCTCCTCAGAATCTCCATTGTCTTTCTCGCTaGCCTCCGACAGGGGTGCACCCTGATCGTCGATGT +
Preference number: 6 (lower is better)
Translates to: RPPPQNLHCLSR*PPTGVHPDRRC
Trigger: ACATCGACGATCAGGGTGCACCCCTGTCGGAGGCCAGCGAGAAAGACAATGGAGATTCTGAGGAGGAGGACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174836.8
CDS CAA 90 bp CGCATGCGAGTTTCCCCTTTGGTGTCCAGCTCCACGTGGATAATGTaGCCCATGACAGAAGTGCTGTGCAGGTGTTGGACGGCCTCCTTG +
Preference number: 6 (lower is better)
Translates to: RMRVSPLVSSSTWIM*PMTEVLCRCWTASL
Trigger: CAAGGAGGCCGTCCAACACCTGCACAGCACTTCTGTCATGGGCAACATTATCCACGTGGAGCTGGACACCAAAGGGGAAACTCGCATGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CCA 72 bp TTTGAATCCAGAAGCCGTGGCTGTTTGGGCAGGAGGTaGAGTATGGGCAAACGTGGTGGCATCCTGCGACTG +
Preference number: 6 (lower is better)
Translates to: FESRSRGCLGRR*SMGKRGGILRL
Trigger: CAGTCGCAGGATGCCACCACGTTTGCCCATACTCCACCTCCTGCCCAAACAGCCACGGCTTCTGGATTCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp TGTTGGACGGCCTCCTTGGCGCCCCTGACTGTGGCAAAGACCACCTaGGCAATGCCCAGGTGTTTCTTGGTCTTCGGGTTATACAAGATC +
Preference number: 6 (lower is better)
Translates to: CWTASLAPLTVAKTT*AMPRCFLVFGLYKI
Trigger: GATCTTGTATAACCCGAAGACCAAGAAACACCTGGGCATTGCCAAGGTGGTCTTTGCCACAGTCAGGGGCGCCAAGGAGGCCGTCCAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS TCA 72 bp AGGATGAGGACGACTCAGCTGGGGCCTTTGAGGTGGTaGTGCTCTCTGTCTCCTCCTCCTCAGAATCTCCAT +
Preference number: 6 (lower is better)
Translates to: RMRTTQLGPLRW*CSLSPPPQNLH
Trigger: ATGGAGATTCTGAGGAGGAGGAGACAGAGAGCATCACCACCTCAAAGGCCCCAGCTGAGTCGTCCTCATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
CDS GCA 72 bp AGGCATGCTCTCTTCTGCCATAGCCACTACCGTGGCTaGAGCCATTGCAGTCTCTTTCTCCTCCTCTTCCTC +
Preference number: 6 (lower is better)
Translates to: RHALFCHSHYRG*SHCSLFLLLFL
Trigger: GAGGAAGAGGAGGAGAAAGAGACTGCAATGGCTGCAGCCACGGTAGTGGCTATGGCAGAAGAGAGCATGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp CGGTTGAGATCACGCTTCATGATGGCCTTAAGTTCCTaGAGCACTACCAGCAAGACCCCATCCACCGTGGCC +
Preference number: 6 (lower is better)
Translates to: RLRSRFMMALSS*STTSKTPSTVA
Trigger: GGCCACGGTGGATGGGGTCTTGCTGGTAGTGCTCAAGGAACTTAAGGCCATCATGAAGCGTGATCTCAACCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp TCCCACCATTCGTCAAAGGCCCGGAAGGCCACCACCTCTACCATCTaGCGGTTGAGATCACGCTTCATGATGGCCTTAAGTTCCTTGAGC +
Preference number: 6 (lower is better)
Translates to: SHHSSKARKATTSTI*RLRSRFMMALSSLS
Trigger: GCTCAAGGAACTTAAGGCCATCATGAAGCGTGATCTCAACCGCAAGATGGTAGAGGTGGTGGCCTTCCGGGCCTTTGACGAATGGTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp GTTTCCCCTTTGGTGTCCAGCTCCACGTGGATAATGTaGCCCATGACAGAAGTGCTGTGCAGGTGTTGGACG +
Preference number: 6 (lower is better)
Translates to: VSPLVSSSTWIM*PMTEVLCRCWT
Trigger: CGTCCAACACCTGCACAGCACTTCTGTCATGGGCAACATTATCCACGTGGAGCTGGACACCAAAGGGGAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp TCGTCAAAGGCCCGGAAGGCCACCACCTCTACCATCTaGCGGTTGAGATCACGCTTCATGATGGCCTTAAGT +
Preference number: 6 (lower is better)
Translates to: SSKARKATTSTI*RLRSRFMMALS
Trigger: ACTTAAGGCCATCATGAAGCGTGATCTCAACCGCAAGATGGTAGAGGTGGTGGCCTTCCGGGCCTTTGACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp CCATCGCTGTCGGCTTCGTTGTCATCTTCGTCATCCTaGTCGGAGCTTGAGGAGGATGAGGGTGAGGATATG +
Preference number: 6 (lower is better)
Translates to: PSLSASLSSSSS*SELEEDEGEDM
Trigger: CATATCCTCACCCTCATCCTCCTCAAGCTCCGACAAGGATGACGAAGATGACAACGAAGCCGACAGCGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp TCATCGATCTTGAATTTGGGCACAGACAGCTCCAGCTCCTTGTTTTaGGTCCAGATTCCGACCACCCGGGGATCTTCCACGATCTCCACC +
Preference number: 6 (lower is better)
Translates to: SSILNLGTDSSSSLF*VQIPTTRGSSTIST
Trigger: GGTGGAGATCGTGGAAGATCCCCGGGTGGTCGGAATCTGGACCAAAAACAAGGAGCTGGAGCTGTCTGTGCCCAAATTCAAGATCGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp TTGAGCTTCTTCTTTCGAAACTTGAGCTGGTTGAACTaGAGCAGGTCGCTGTCACAGCTGCCGGTGAAGGAG +
Preference number: 6 (lower is better)
Translates to: LSFFFRNLSWLN*SRSLSQLPVKE
Trigger: CTCCTTCACCGGCAGCTGTGACAGCGACCTGCTCAAGTTCAACCAGCTCAAGTTTCGAAAGAAGAAGCTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp TGGCTCTTACAGAATTTGAGCTTCTTCTTTCGAAACTTGAGCTGGTaGAACTTGAGCAGGTCGCTGTCACAGCTGCCGGTGAAGGAGGAC +
Preference number: 6 (lower is better)
Translates to: WLLQNLSFFFRNLSW*NLSRSLSQLPVKED
Trigger: GTCCTCCTTCACCGGCAGCTGTGACAGCGACCTGCTCAAGTTCAACCAGCTCAAGTTTCGAAAGAAGAAGCTCAAATTCTGTAAGAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 90 bp TTACAGAATTTGAGCTTCTTCTTTCGAAACTTGAGCTGGTTGAACTaGAGCAGGTCGCTGTCACAGCTGCCGGTGAAGGAGGACAAGAGG +
Preference number: 6 (lower is better)
Translates to: LQNLSFFFRNLSWLN*SRSLSQLPVKEDKR
Trigger: CCTCTTGTCCTCCTTCACCGGCAGCTGTGACAGCGACCTGCTCAAGTTCAACCAGCTCAAGTTTCGAAAGAAGAAGCTCAAATTCTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8
CDS CAA 72 bp TTTTTGCACATGTCCCTTAGGAAGTTTTCACGGACGTaGTCATTCAGCTTGGCAAATGTCACCTGCTTTGGA +
Preference number: 6 (lower is better)
Translates to: FLHMSLRKFSRT*SFSLANVTCFG
Trigger: TCCAAAGCAGGTGACATTTGCCAAGCTGAATGACAACGTCCGTGAAAACTTCCTAAGGGACATGTGCAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000056053.9
ENSMUST00000163030.9
ENSMUST00000174836.8