Pregenerated sensors for SET (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054766Ensembl transcript IDs: ENSMUST00000067996.7, ENSMUST00000102866.10
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGCTTCTGCTACATACCTGTGACAGACACTACCAACCACCTCACTaGCTGCTGACCCTGACAGTTCACACTGCCAATGAGGACACGTCA | + |
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Preference number: 1 (lower is better) Translates to: ELLLHTCDRHYQPPH*LLTLTVHTANEDTS Trigger: TGACGTGTCCTCATTGGCAGTGTGAACTGTCAGGGTCAGCAGTCAGTGAGGTGGTTGGTAGTGTCTGTCACAGGTATGTAGCAGAAGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR TCA 90 bp | CCACCTACGTCAGTCTCACATCTGAGAGCTTCTGCTACATACCTGTaGCAGACACTACCAACCACCTCACTGACTGCTGACCCTGACAGT | + |
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Preference number: 1 (lower is better) Translates to: PPTSVSHLRASATYL*QTLPTTSLTADPDS Trigger: ACTGTCAGGGTCAGCAGTCAGTGAGGTGGTTGGTAGTGTCTGTCACAGGTATGTAGCAGAAGCTCTCAGATGTGAGACTGACGTAGGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR TCA 90 bp | GCGCTGAGCAGACAGCTCTTCATCCACCTACGTCAGTCTCACATCTaGGAGCTTCTGCTACATACCTGTGACAGACACTACCAACCACCT | + |
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Preference number: 1 (lower is better) Translates to: ALSRQLFIHLRQSHI*ELLLHTCDRHYQPP Trigger: AGGTGGTTGGTAGTGTCTGTCACAGGTATGTAGCAGAAGCTCTCAGATGTGAGACTGACGTAGGTGGATGAAGAGCTGTCTGCTCAGCGC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR GCA 90 bp | GACAGCTCTTCATCCACCTACGTCAGTCTCACATCTGAGAGCTTCTaGTACATACCTGTGACAGACACTACCAACCACCTCACTGACTGC | + |
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Preference number: 1 (lower is better) Translates to: DSSSSTYVSLTSESF*YIPVTDTTNHLTDC Trigger: GCAGTCAGTGAGGTGGTTGGTAGTGTCTGTCACAGGTATGTAGCAGAAGCTCTCAGATGTGAGACTGACGTAGGTGGATGAAGAGCTGTC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR GCA 90 bp | CTGCTGACCCTGACAGTTCACACTGCCAATGAGGACACGTCAGCGGCTGTCCCTGTGGGAGCAGGTAGGTaGTGCCGTGAGGTCCGGGTA | + |
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Preference number: 2 (lower is better) Translates to: LLTLTVHTANEDTSAAVPVGAGR*CREVRV Trigger: TACCCGGACCTCACGGCAGCACCTACCTGCTCCCAC...AGGGACAGCCGCTGACGTGTCCTCATTGGCAGTGTGAACTGTCAGGGTCAGCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR GCA 90 bp | CTGCTGACCCTGACAGTTCACACTGCCAATGAGGACACGTCAGCGGCTGTCCCTCACAGCAGCAAGCTGTaGCCACAACTCAGTACGGAG | + |
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Preference number: 2 (lower is better) Translates to: LLTLTVHTANEDTSAAVPHSSKL*PQLSTE Trigger: CTCCGTACTGAGTTGTGGGCACAGCTTGCTGCTGTG...AGGGACAGCCGCTGACGTGTCCTCATTGGCAGTGTGAACTGTCAGGGTCAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR GCA 90 bp | GGAGCAGGTAGGTGCTGCCGTGAGGTCCGGGTAAAGGCCCATTTTAAAAAGAAACACAGCAGCAAGCTGTaGCCACAACTCAGTACGGAG | + |
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Preference number: 2 (lower is better) Translates to: GAGRCCREVRVKAHFKKKHSSKL*PQLSTE Trigger: CTCCGTACTGAGTTGTGGGCACAGCTTGCTGCTGTG...TTTCTTTTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR CCA 90 bp | CTGCTGACCCTGACAGTTCACACTGCCAATGAGGACACGTCAGCGGCTGTCCCTTCCCACAGAGCATGGTaGTGTGGAATCCACAAATTT | + |
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Preference number: 2 (lower is better) Translates to: LLTLTVHTANEDTSAAVPSHRAW*CGIHKF Trigger: AAATTTGTGGATTCCACACCACCATGCTCTGTGGGA...AGGGACAGCCGCTGACGTGTCCTCATTGGCAGTGTGAACTGTCAGGGTCAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR TCA 90 bp | CTGCTGACCCTGACAGTTCACACTGCCAATGAGGACACGTCAGCGGCTGTCCCTAGACAAAGTTTGACGTaGTGTCATTATGCAGTCAAA | + |
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Preference number: 2 (lower is better) Translates to: LLTLTVHTANEDTSAAVPRQSLT*CHYAVK Trigger: TTTGACTGCATAATGACATCACGTCAAACTTTGTCT...AGGGACAGCCGCTGACGTGTCCTCATTGGCAGTGTGAACTGTCAGGGTCAGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR CCA 90 bp | GGAGCAGGTAGGTGCTGCCGTGAGGTCCGGGTAAAGGCCCATTTTAAAAAGAAATCCCACAGAGCATGGTaGTGTGGAATCCACAAATTT | + |
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Preference number: 2 (lower is better) Translates to: GAGRCCREVRVKAHFKKKSHRAW*CGIHKF Trigger: AAATTTGTGGATTCCACACCACCATGCTCTGTGGGA...TTTCTTTTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR TCA 90 bp | GGAGCAGGTAGGTGCTGCCGTGAGGTCCGGGTAAAGGCCCATTTTAAAAAGAAAGGAGACGTTAAGACATaGTTCAAATCCCTTTCTCAA | + |
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Preference number: 2 (lower is better) Translates to: GAGRCCREVRVKAHFKKKGDVKT*FKSLSQ Trigger: TTGAGAAAGGGATTTGAATCATGTCTTAACGTCTCC...TTTCTTTTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR GCA 72 bp | CAGAGCAACGGGTCAGTAACGGTGGGAGCAGGTAGGTaGTGCCGTGAGGTCCGGGTAAAGGCCCATTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: QSNGSVTVGAGR*CREVRVKAHFK Trigger: TTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCCCACCGTTACTGACCCGTTGCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR GCA 72 bp | AGCAACGGGTCAGTAACGGTGGGAGCAGGTAGGTGCTaGCGTGAGGTCCGGGTAAAGGCCCATTTTAAAAAG | + |
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Preference number: 3 (lower is better) Translates to: SNGSVTVGAGRC*REVRVKAHFKK Trigger: CTTTTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCCCACCGTTACTGACCCGTTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR CAA 90 bp | CTGCTGACCCTGACAGTTCACACTGCCAATGAGGACACGTCAGCGGCTGTCCCTTTGAGAACCATGATGTaGAGACCTCAAAACAGGGCG | + |
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Preference number: 3 (lower is better) Translates to: LLTLTVHTANEDTSAAVPLRTMM*RPQNRA Trigger: CGCCCTGTTTTGAGGTCTCAACATCATGGTTCTCAA...AGGGACAGCCGCTGACGTGTCCTCATTGGCAGTGTGAACTGTCAGGGTCAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR TCA 72 bp | GTAGCTTCCCAAACATTATCCTCTGCCCGATGGCGCTaGGCAGACAGCTCTTCATCCACCTACGTCAGTCTC | + |
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Preference number: 3 (lower is better) Translates to: VASQTLSSARWR*ADSSSSTYVSL Trigger: GAGACTGACGTAGGTGGATGAAGAGCTGTCTGCTCAGCGCCATCGGGCAGAGGATAATGTTTGGGAAGCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR CAA 90 bp | CTGCTGACCCTGACAGTTCACACTGCCAATGAGGACACGTCAGCGGCTGTCCCTTCTGTTGAGCATCTGTaGACAGAAAAGCATCAGGTC | + |
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Preference number: 3 (lower is better) Translates to: LLTLTVHTANEDTSAAVPSVEHL*TEKHQV Trigger: GACCTGATGCTTTTCTGTCAACAGATGCTCAACAGA...AGGGACAGCCGCTGACGTGTCCTCATTGGCAGTGTGAACTGTCAGGGTCAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR TCA 72 bp | CTACATACCTGTGACAGACACTACCAACCACCTCACTaGCTGCTGACCCTGACAGTTCACACTGCCAATGAG | + |
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Preference number: 3 (lower is better) Translates to: LHTCDRHYQPPH*LLTLTVHTANE Trigger: CTCATTGGCAGTGTGAACTGTCAGGGTCAGCAGTCAGTGAGGTGGTTGGTAGTGTCTGTCACAGGTATGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR CAA 90 bp | GGAGCAGGTAGGTGCTGCCGTGAGGTCCGGGTAAAGGCCCATTTTAAAAAGAAATTGAGAACCATGATGTaGAGACCTCAAAACAGGGCG | + |
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Preference number: 3 (lower is better) Translates to: GAGRCCREVRVKAHFKKKLRTMM*RPQNRA Trigger: CGCCCTGTTTTGAGGTCTCAACATCATGGTTCTCAA...TTTCTTTTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR TCA 72 bp | TCAGTCTCACATCTGAGAGCTTCTGCTACATACCTGTaGCAGACACTACCAACCACCTCACTGACTGCTGAC | + |
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Preference number: 3 (lower is better) Translates to: SVSHLRASATYL*QTLPTTSLTAD Trigger: GTCAGCAGTCAGTGAGGTGGTTGGTAGTGTCTGTCACAGGTATGTAGCAGAAGCTCTCAGATGTGAGACTGA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR CAA 90 bp | GGAGCAGGTAGGTGCTGCCGTGAGGTCCGGGTAAAGGCCCATTTTAAAAAGAAATCTGTTGAGCATCTGTaGACAGAAAAGCATCAGGTC | + |
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Preference number: 3 (lower is better) Translates to: GAGRCCREVRVKAHFKKKSVEHL*TEKHQV Trigger: GACCTGATGCTTTTCTGTCAACAGATGCTCAACAGA...TTTCTTTTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| 3UTR-3UTR CAA 90 bp | GGAGCAGGTAGGTGCTGCCGTGAGGTCCGGGTAAAGGCCCATTTTAAAAAGAAAATTATGCAGTCAAACTaGGAAGGTCTGTTGAGCATC | + |
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Preference number: 3 (lower is better) Translates to: GAGRCCREVRVKAHFKKKIMQSN*EGLLSI Trigger: GATGCTCAACAGACCTTCCAAGTTTGACTGCATAAT...TTTCTTTTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000067996.7 ENSMUST00000102866.10 |
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| CDS-3UTR CCA 90 bp | GGAGCAGGTAGGTGCTGCCGTGAGGTCCGGGTAAAGGCCCATTTTAAAAAGAAAGGGCAGCAGCCGGTCTaGGTTTCTTGGGCTGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: GAGRCCREVRVKAHFKKKGQQPV*VSWAEA Trigger: TGCCTCAGCCCAAGAAACCCAGACCGGCTGCTGCCC...TTTCTTTTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102866.10 |
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| CDS-3UTR TCA 90 bp | GGAGCAGGTAGGTGCTGCCGTGAGGTCCGGGTAAAGGCCCATTTTAAAAAGAAATTGCTGTTCTTTTTCTaGGGTCTCGTCGGCCCCGTC | + |
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Preference number: 4 (lower is better) Translates to: GAGRCCREVRVKAHFKKKLLFFF*GLVGPV Trigger: GACGGGGCCGACGAGACCTCAGAAAAAGAACAGCAA...TTTCTTTTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000067996.7 |
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| CDS-3UTR CAA 90 bp | GGAGCAGGTAGGTGCTGCCGTGAGGTCCGGGTAAAGGCCCATTTTAAAAAGAAACCGGGAGAGGCCGACTaGTCCTCCAGCTTCGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: GAGRCCREVRVKAHFKKKPGEAD*SSSFGA Trigger: TGCCCCGAAGCTGGAGGACAAGTCGGCCTCTCCCGG...TTTCTTTTTAAAATGGGCCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102866.10 |
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