Pregenerated sensors for SERTAD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055200Ensembl transcript IDs: ENSMUST00000068641.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTGCACATGGTCCGGCCTGGTTATGAATCAGGAGGCTGCTGGTACTaGGGTCCTGCCAAGAGGTTGAGTCTGTCCGGAGACCAGCCCCTC | + |
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Preference number: 1 (lower is better) Translates to: LHMVRPGYESGGCWY*GPAKRLSLSGDQPL Trigger: GAGGGGCTGGTCTCCGGACAGACTCAACCTCTTGGCAGGACCCCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR CCA 90 bp | GCCCTATTGCACATGGTCCGGCCTGGTTATGAATCAGGAGGCTGCTaGTACTGGGGTCCTGCCAAGAGGTTGAGTCTGTCCGGAGACCAG | + |
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Preference number: 1 (lower is better) Translates to: ALLHMVRPGYESGGC*YWGPAKRLSLSGDQ Trigger: CTGGTCTCCGGACAGACTCAACCTCTTGGCAGGACCCCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAATAGGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR GCA 90 bp | TCTGCCCTATTGCACATGGTCCGGCCTGGTTATGAATCAGGAGGCTaGTGGTACTGGGGTCCTGCCAAGAGGTTGAGTCTGTCCGGAGAC | + |
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Preference number: 1 (lower is better) Translates to: SALLHMVRPGYESGG*WYWGPAKRLSLSGD Trigger: GTCTCCGGACAGACTCAACCTCTTGGCAGGACCCCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAATAGGGCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR TCA 90 bp | GAGCTGGTAGACTTCTGCCCTATTGCACATGGTCCGGCCTGGTTATaGATCAGGAGGCTGCTGGTACTGGGGTCCTGCCAAGAGGTTGAG | + |
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Preference number: 1 (lower is better) Translates to: ELVDFCPIAHGPAWL*IRRLLVLGSCQEVE Trigger: CTCAACCTCTTGGCAGGACCCCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAATAGGGCAGAAGTCTACCAGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTGCCCTATTGCACATGGTCCGGCCTGGTTATGAATCAGGAGGCTGCTGGCTTCACGGAAGGCTGTaGCAACCAGACACGCACACA | + |
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Preference number: 2 (lower is better) Translates to: TSALLHMVRPGYESGGCWLHGRL*QPDTHT Trigger: TGTGTGCGTGTCTGGTTGCCACAGCCTTCCGTGAAG...CCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAATAGGGCAGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR CAA 90 bp | TCACGGAAGGCTGTGGCAACCAGACACGCACACATGCAGGACAGTTaGTGGAATCCTGACATAGGAGGAAAGGAGGCCACACAGTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: SRKAVATRHAHMQDS*WNPDIGGKEATQSL Trigger: CAGAGACTGTGTGGCCTCCTTTCCTCCTATGTCAGGATTCCACAAACTGTCCTGCATGTGTGCGTGTCTGGTTGCCACAGCCTTCCGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR-3UTR GCA 90 bp | GCCCTATTGCACATGGTCCGGCCTGGTTATGAATCAGGAGGCTGCTGGTACTGGCCAGACACGCACACATaGAGGACAGTTTGTGGAATC | + |
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Preference number: 2 (lower is better) Translates to: ALLHMVRPGYESGGCWYWPDTHT*RTVCGI Trigger: GATTCCACAAACTGTCCTGCATGTGTGCGTGTCTGG...CCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAATAGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR-3UTR CCA 90 bp | TACTGGGGTCCTGCCAAGAGGTTGAGTCTGTCCGGAGACCAGCCCCTCCATCACATGCAGGACAGTTTGTaGAATCCTGACATAGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: YWGPAKRLSLSGDQPLHHMQDSL*NPDIGG Trigger: TCCTCCTATGTCAGGATTCCACAAACTGTCCTGCAT...GTGATGGAGGGGCTGGTCTCCGGACAGACTCAACCTCTTGGCAGGACCCCAGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR-3UTR GCA 90 bp | AACCAACCAACCAACAAACATACGCCTCTGCAAACCCTACCTCCTCTTTCCTCTCTGGTACTGGGGTCCTaGCAAGAGGTTGAGTCTGTC | + |
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Preference number: 2 (lower is better) Translates to: NQPTNKHTPLQTLPPLSSLVLGS*QEVESV Trigger: GACAGACTCAACCTCTTGGCAGGACCCCAGTACCAG...AGAGGAAAGAGGAGGTAGGGTTTGCAGAGGCGTATGTTTGTTGGTTGGTTGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR CCA 72 bp | GTCCGGCCTGGTTATGAATCAGGAGGCTGCTGGTACTaGGGTCCTGCCAAGAGGTTGAGTCTGTCCGGAGAC | + |
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Preference number: 3 (lower is better) Translates to: VRPGYESGGCWY*GPAKRLSLSGD Trigger: GTCTCCGGACAGACTCAACCTCTTGGCAGGACCCCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR CCA 72 bp | CACATGGTCCGGCCTGGTTATGAATCAGGAGGCTGCTaGTACTGGGGTCCTGCCAAGAGGTTGAGTCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: HMVRPGYESGGC*YWGPAKRLSLS Trigger: GGACAGACTCAACCTCTTGGCAGGACCCCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR TCA 72 bp | GACTTCTGCCCTATTGCACATGGTCCGGCCTGGTTATaGATCAGGAGGCTGCTGGTACTGGGGTCCTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: DFCPIAHGPAWL*IRRLLVLGSCQ Trigger: TTGGCAGGACCCCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAATAGGGCAGAAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR GCA 72 bp | TTGCACATGGTCCGGCCTGGTTATGAATCAGGAGGCTaGTGGTACTGGGGTCCTGCCAAGAGGTTGAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: LHMVRPGYESGG*WYWGPAKRLSL Trigger: CAGACTCAACCTCTTGGCAGGACCCCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR CCA 72 bp | CAGCATGGAGCTGGTAGACTTCTGCCCTATTGCACATaGTCCGGCCTGGTTATGAATCAGGAGGCTGCTGGT | + |
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Preference number: 3 (lower is better) Translates to: QHGAGRLLPYCT*SGLVMNQEAAG Trigger: ACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAATAGGGCAGAAGTCTACCAGCTCCATGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR GCA 72 bp | GTAGCACAGCATGGAGCTGGTAGACTTCTGCCCTATTaGACATGGTCCGGCCTGGTTATGAATCAGGAGGCT | + |
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Preference number: 3 (lower is better) Translates to: VAQHGAGRLLPY*TWSGLVMNQEA Trigger: AGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAATAGGGCAGAAGTCTACCAGCTCCATGCTGTGCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR TCA 72 bp | CAGACACGCACACATGCAGGACAGTTTGTGGAATCCTaGCATAGGAGGAAAGGAGGCCACACAGTCTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: QTRTHAGQFVES*HRRKGGHTVSV Trigger: GACAGAGACTGTGTGGCCTCCTTTCCTCCTATGTCAGGATTCCACAAACTGTCCTGCATGTGTGCGTGTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR GCA 90 bp | ATAGGAGGAAAGGAGGCCACACAGTCTCTGTCTAGCGCCTCCGCCACGCACACACCTGCGGAGGCTGGGTaGTCTGGGGCCCAGGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: IGGKEATQSLSSASATHTPAEAG*SGAQAA Trigger: CGCAGCCTGGGCCCCAGAGCACCCAGCCTCCGCAGG...TGTGTGCGTGGCGGAGGCGCTAGACAGAGACTGTGTGGCCTCCTTTCCTCCTAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR CCA 90 bp | TGCTGGTACTGGGGTCCTGCCAAGAGGTTGAGTCTGTCCGGAGACCAGCCCCTCAGGCGAATGGCAGCCTaGAGCTGCTGGAGTGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: CWYWGPAKRLSLSGDQPLRRMAA*SCWSVL Trigger: CAACACACTCCAGCAGCTCCAGGCTGCCATTCGCCT...GAGGGGCTGGTCTCCGGACAGACTCAACCTCTTGGCAGGACCCCAGTACCAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR CCA 90 bp | GAGGAAAGGAGGCCACACAGTCTCTGTCTAGCGCCTCCGCCACGCACACATACACTGGAGCGAGGCGAATaGCAGCCTGGAGCTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: EERRPHSLCLAPPPRTHTLERGE*QPGAAG Trigger: TCCAGCAGCTCCAGGCTGCCATTCGCCTCGCTCCAG...TGTATGTGTGCGTGGCGGAGGCGCTAGACAGAGACTGTGTGGCCTCCTTTCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR CCA 90 bp | ACGCACCTTCACGGAAGGCTGTGGCAACCAGACACGCACACATGCAGGACAGTTTTCCGGGGGCAGGGCTaGTGCTGGAGCGAGGCGAAT | + |
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Preference number: 4 (lower is better) Translates to: THLHGRLWQPDTHTCRTVFRGQG*CWSEAN Trigger: ATTCGCCTCGCTCCAGCACCAGCCCTGCCCCCGGAA...AACTGTCCTGCATGTGTGCGTGTCTGGTTGCCACAGCCTTCCGTGAAGGTGCGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR CCA 90 bp | TGCTGGTACTGGGGTCCTGCCAAGAGGTTGAGTCTGTCCGGAGACCAGCCCCTCGCTCCGAAGAGCTGTTaGACTCCAGTCCCACTTCTC | + |
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Preference number: 4 (lower is better) Translates to: CWYWGPAKRLSLSGDQPLAPKSC*TPVPLL Trigger: GAGAAGTGGGACTGGAGTCCAACAGCTCTTCGGAGC...GAGGGGCTGGTCTCCGGACAGACTCAACCTCTTGGCAGGACCCCAGTACCAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR GCA 90 bp | AATCCTGACATAGGAGGAAAGGAGGCCACACAGTCTCTGTCTAGCGCCTCCGCCCTCCGGGGGTGGAAGTaGAACGTCCTTTTCCACCGC | + |
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Preference number: 4 (lower is better) Translates to: NPDIGGKEATQSLSSASALRGWK*NVLFHR Trigger: GCGGTGGAAAAGGACGTTGCACTTCCACCCCCGGAG...GGCGGAGGCGCTAGACAGAGACTGTGTGGCCTCCTTTCCTCCTATGTCAGGATT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR GCA 90 bp | AGTCTCTGTCTAGCGCCTCCGCCACGCACACATACAAGAGTCCCATCTAAGGCCTTGTGGATAAGGACGTaGCTGCGGAGGCTGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: SLCLAPPPRTHTRVPSKALWIRT*LRRLGA Trigger: AGCACCCAGCCTCCGCAGGCACGTCCTTATCCACAA...GGCCTTAGATGGGACTCTTGTATGTGTGCGTGGCGGAGGCGCTAGACAGAGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR GCA 90 bp | TGCACATGGTCCGGCCTGGTTATGAATCAGGAGGCTGCTGGTACTGGGGTCCTGATGGCAGCCTGGAGCTaGTGGAGTGTGTTGTGGATA | + |
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Preference number: 4 (lower is better) Translates to: CTWSGLVMNQEAAGTGVLMAAWS*WSVLWI Trigger: TATCCACAACACACTCCAGCAGCTCCAGGCTGCCAT...CAGGACCCCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR CCA 90 bp | GCCCTATTGCACATGGTCCGGCCTGGTTATGAATCAGGAGGCTGCTGGTACTGGGCAGCCTGGAGCTGCTaGAGTGTGTTGTGGATAAGG | + |
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Preference number: 4 (lower is better) Translates to: ALLHMVRPGYESGGCWYWAAWSC*SVLWIR Trigger: CCTTATCCACAACACACTCCAGCAGCTCCAGGCTGC...CCAGTACCAGCAGCCTCCTGATTCATAACCAGGCCGGACCATGTGCAATAGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR CCA 90 bp | AGGAGGCCACACAGTCTCTGTCTAGCGCCTCCGCCACGCACACATACAAGAGTCGACACGATCTCATTCTaGGGACTCGAGGAAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: RRPHSLCLAPPPRTHTRVDTISF*GLEEAA Trigger: AGCAGCTTCCTCGAGTCCCCAGAATGAGATCGTGTC...GACTCTTGTATGTGTGCGTGGCGGAGGCGCTAGACAGAGACTGTGTGGCCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR TCA 90 bp | AGTCTCTGTCTAGCGCCTCCGCCACGCACACATACAAGAGTCCCATCTAAGGCCATGTATCTAGCTCCCTaGGGATGGAACCGATGGTGG | + |
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Preference number: 4 (lower is better) Translates to: SLCLAPPPRTHTRVPSKAMYLAP*GWNRWW Trigger: CCACCATCGGTTCCATCCTCAGGGAGCTAGATACAT...GGCCTTAGATGGGACTCTTGTATGTGTGCGTGGCGGAGGCGCTAGACAGAGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| 3UTR CAA 72 bp | GCTGTGGCAACCAGACACGCACACATGCAGGACAGTTaGTGGAATCCTGACATAGGAGGAAAGGAGGCCACA | + |
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Preference number: 4 (lower is better) Translates to: AVATRHAHMQDS*WNPDIGGKEAT Trigger: TGTGGCCTCCTTTCCTCCTATGTCAGGATTCCACAAACTGTCCTGCATGTGTGCGTGTCTGGTTGCCACAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR CCA 90 bp | AACCAACCAACCAACAAACATACGCCTCTGCAAACCCTACCTCCTCTTTCCTCTGGGCCCAGGCTGCGCTaGACTTTGTCCAGAGAGATT | + |
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Preference number: 4 (lower is better) Translates to: NQPTNKHTPLQTLPPLSSGPRLR*TLSREI Trigger: AATCTCTCTGGACAAAGTCCAGCGCAGCCTGGGCCC...AGAGGAAAGAGGAGGTAGGGTTTGCAGAGGCGTATGTTTGTTGGTTGGTTGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CCA 90 bp | GGTTCCGGGGGCAGGGCTGGTGCTGGAGCGAGGCGAATGGCAGCCTaGAGCTGCTGGAGTGTGTTGTGGATAAGGACGTGCCTGCGGAGG | + |
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Preference number: 5 (lower is better) Translates to: GSGGRAGAGARRMAA*SCWSVLWIRTCLRR Trigger: CCTCCGCAGGCACGTCCTTATCCACAACACACTCCAGCAGCTCCAGGCTGCCATTCGCCTCGCTCCAGCACCAGCCCTGCCCCCGGAACC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS GCA 90 bp | CGAATGGCAGCCTGGAGCTGCTGGAGTGTGTTGTGGATAAGGACGTaGCTGCGGAGGCTGGGTGCTCTGGGGCCCAGGCTGCGCTGGACT | + |
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Preference number: 5 (lower is better) Translates to: RMAAWSCWSVLWIRT*LRRLGALGPRLRWT Trigger: AGTCCAGCGCAGCCTGGGCCCCAGAGCACCCAGCCTCCGCAGGCACGTCCTTATCCACAACACACTCCAGCAGCTCCAGGCTGCCATTCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CCA 90 bp | GGCAGGGCTGGTGCTGGAGCGAGGCGAATGGCAGCCTGGAGCTGCTaGAGTGTGTTGTGGATAAGGACGTGCCTGCGGAGGCTGGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: GRAGAGARRMAAWSC*SVLWIRTCLRRLGA Trigger: AGCACCCAGCCTCCGCAGGCACGTCCTTATCCACAACACACTCCAGCAGCTCCAGGCTGCCATTCGCCTCGCTCCAGCACCAGCCCTGCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CCA 90 bp | CCAGGATCCTGGGCTACAGAAGAGGCTGTGCGGCGGCTCCGGGGGTaGAAGTGCAACGTCCTTTTCCACCGCAGATGTATCAATGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: PGSWATEEAVRRLRG*KCNVLFHRRCINVQ Trigger: CTGGACATTGATACATCTGCGGTGGAAAAGGACGTTGCACTTCCACCCCCGGAGCCGCCGCACAGCCTCTTCTGTAGCCCAGGATCCTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR CAA 90 bp | AGGAGGCCACACAGTCTCTGTCTAGCGCCTCCGCCACGCACACATACAAGAGTCGATTCGGAGCAGGGCTaGCTGGTAGCTCCGAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: RRPHSLCLAPPPRTHTRVDSEQG*LVAPKS Trigger: GCTCTTCGGAGCTACCAGCAAGCCCTGCTCCGAATC...GACTCTTGTATGTGTGCGTGGCGGAGGCGCTAGACAGAGACTGTGTGGCCTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CCA 90 bp | AGAGCTTCTAAGAATACAGGATCAGCCTGGGACACGATCTCATTCTaGGGACTCGAGGAAGCTGCTGGATTCAGAGGCGGCTCCATCTCA | + |
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Preference number: 5 (lower is better) Translates to: RASKNTGSAWDTISF*GLEEAAGFRGGSIS Trigger: TGAGATGGAGCCGCCTCTGAATCCAGCAGCTTCCTCGAGTCCCCAGAATGAGATCGTGTCCCAGGCTGATCCTGTATTCTTAGAAGCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CCA 90 bp | CCCAGGTACCTTGAGCTCAGAGCTTCTAAGAATACAGGATCAGCCTaGGACACGATCTCATTCTGGGGACTCGAGGAAGCTGCTGGATTC | + |
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Preference number: 5 (lower is better) Translates to: PRYLELRASKNTGSA*DTISFWGLEEAAGF Trigger: GAATCCAGCAGCTTCCTCGAGTCCCCAGAATGAGATCGTGTCCCAGGCTGATCCTGTATTCTTAGAAGCTCTGAGCTCAAGGTACCTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS-3UTR CAA 90 bp | AACCAACCAACCAACAAACATACGCCTCTGCAAACCCTACCTCCTCTTTCCTCTAGGCTGCGCTGGACTTaGTCCAGAGAGATTCGGAGC | + |
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Preference number: 5 (lower is better) Translates to: NQPTNKHTPLQTLPPLSSRLRWT*SREIRS Trigger: GCTCCGAATCTCTCTGGACAAAGTCCAGCGCAGCCT...AGAGGAAAGAGGAGGTAGGGTTTGCAGAGGCGTATGTTTGTTGGTTGGTTGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS GCA 72 bp | TGTGTTGTGGATAAGGACGTGCCTGCGGAGGCTGGGTaGTCTGGGGCCCAGGCTGCGCTGGACTTTGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: CVVDKDVPAEAG*SGAQAALDFVQ Trigger: CTGGACAAAGTCCAGCGCAGCCTGGGCCCCAGAGCACCCAGCCTCCGCAGGCACGTCCTTATCCACAACACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CCA 72 bp | GGCAGGGCTGGTGCTGGAGCGAGGCGAATGGCAGCCTaGAGCTGCTGGAGTGTGTTGTGGATAAGGACGTGC | + |
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Preference number: 6 (lower is better) Translates to: GRAGAGARRMAA*SCWSVLWIRTC Trigger: GCACGTCCTTATCCACAACACACTCCAGCAGCTCCAGGCTGCCATTCGCCTCGCTCCAGCACCAGCCCTGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CCA 72 bp | TGGGCTACAGAAGAGGCTGTGCGGCGGCTCCGGGGGTaGAAGTGCAACGTCCTTTTCCACCGCAGATGTATC | + |
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Preference number: 6 (lower is better) Translates to: WATEEAVRRLRG*KCNVLFHRRCI Trigger: GATACATCTGCGGTGGAAAAGGACGTTGCACTTCCACCCCCGGAGCCGCCGCACAGCCTCTTCTGTAGCCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CAA 90 bp | GCCCAGGCTGCGCTGGACTTTGTCCAGAGAGATTCGGAGCAGGGCTaGCTGGTAGCTCCGAAGAGCTGTTGGACTCCAGTCCCACTTCTC | + |
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Preference number: 6 (lower is better) Translates to: AQAALDFVQRDSEQG*LVAPKSCWTPVPLL Trigger: GAGAAGTGGGACTGGAGTCCAACAGCTCTTCGGAGCTACCAGCAAGCCCTGCTCCGAATCTCTCTGGACAAAGTCCAGCGCAGCCTGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CAA 72 bp | GCGCTGGACTTTGTCCAGAGAGATTCGGAGCAGGGCTaGCTGGTAGCTCCGAAGAGCTGTTGGACTCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: ALDFVQRDSEQG*LVAPKSCWTPV Trigger: GACTGGAGTCCAACAGCTCTTCGGAGCTACCAGCAAGCCCTGCTCCGAATCTCTCTGGACAAAGTCCAGCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS GCA 72 bp | CTGGGACACGATCTCATTCTGGGGACTCGAGGAAGCTaGTGGATTCAGAGGCGGCTCCATCTCATCCATGGA | + |
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Preference number: 6 (lower is better) Translates to: LGHDLILGTRGS*WIQRRLHLIHG Trigger: TCCATGGATGAGATGGAGCCGCCTCTGAATCCAGCAGCTTCCTCGAGTCCCCAGAATGAGATCGTGTCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CCA 72 bp | GGACACGATCTCATTCTGGGGACTCGAGGAAGCTGCTaGATTCAGAGGCGGCTCCATCTCATCCATGGATGT | + |
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Preference number: 6 (lower is better) Translates to: GHDLILGTRGSC*IQRRLHLIHGC Trigger: ACATCCATGGATGAGATGGAGCCGCCTCTGAATCCAGCAGCTTCCTCGAGTCCCCAGAATGAGATCGTGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CAA 90 bp | CAATGTCCAGAAAGAAGTCATCCAGGCCAGAGTCTCCCAGGTACCTaGAGCTCAGAGCTTCTAAGAATACAGGATCAGCCTGGGACACGA | + |
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Preference number: 6 (lower is better) Translates to: QCPERSHPGQSLPGT*SSELLRIQDQPGTR Trigger: TCGTGTCCCAGGCTGATCCTGTATTCTTAGAAGCTCTGAGCTCAAGGTACCTGGGAGACTCTGGCCTGGATGACTTCTTTCTGGACATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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| CDS CCA 72 bp | CTTGAGCTCAGAGCTTCTAAGAATACAGGATCAGCCTaGGACACGATCTCATTCTGGGGACTCGAGGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: LELRASKNTGSA*DTISFWGLEEA Trigger: AGCTTCCTCGAGTCCCCAGAATGAGATCGTGTCCCAGGCTGATCCTGTATTCTTAGAAGCTCTGAGCTCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068641.8 |
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