RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SERPINH1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070436

Ensembl transcript IDs: ENSMUST00000094154.6, ENSMUST00000169437.9, ENSMUST00000207849.2, ENSMUST00000207989.2, ENSMUST00000208119.2, ENSMUST00000208749.2

Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATaGCAGGGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCT +
Preference number: 1 (lower is better)
Translates to: KFMTVMPNITILGQA*QGAPPMHCLPAPTA
Trigger: AGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR TCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGGGTGAACAGGAAGACTaGAGAGGGCTCGGGGCAAGG +
Preference number: 2 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKGEQED*RGLGAR
Trigger: CCTTGCCCCGAGCCCTCTTCAGTCTTCCTGTTCACC...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR TCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGGGTGAACAGGAAGACTaGAGAGGGCTCGGGGCAAGG +
Preference number: 2 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALGEQED*RGLGAR
Trigger: CCTTGCCCCGAGCCCTCTTCAGTCTTCCTGTTCACC...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR CCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGCCCAGCTCCCACCGCTaGGCAAGGATCATTTTAAGG +
Preference number: 2 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALPSSHR*ARIILR
Trigger: CCTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGG...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR CCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGACCCACTCAGACATATaGGAATTCCGATCTGCACTG +
Preference number: 2 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKTHSDI*EFRSAL
Trigger: CAGTGCAGATCGGAATTCCCATATGTCTGAGTGGGT...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR TCA 90 bp GGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTAATATGAACACTGATTaGCTGTTGAGGCAGATTGGA +
Preference number: 2 (lower is better)
Translates to: GAPPMHCLPAPTAGQGSFNMNTD*LLRQIG
Trigger: TCCAATCTGCCTCAACAGTCAATCAGTGTTCATATT...AAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR CCA 90 bp ACAGGAAGACTGAAGAGGGCTCGGGGCAAGGTGACAAAAAGAGCTAGGCTGCCCACCCACTCAGACATATaGGAATTCCGATCTGCACTG +
Preference number: 2 (lower is better)
Translates to: TGRLKRARGKVTKRARLPTHSDI*EFRSAL
Trigger: CAGTGCAGATCGGAATTCCCATATGTCTGAGTGGGT...GGGCAGCCTAGCTCTTTTTGTCACCTTGCCCCGAGCCCTCTTCAGTCTTCCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR TCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGACACTGATTGACTGTTaGGGCAGATTGGATCTAAAA +
Preference number: 2 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKTLIDC*GRLDLK
Trigger: TTTTAGATCCAATCTGCCTCAACAGTCAATCAGTGT...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR TCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGAATATGAACACTGATTaGCTGTTGAGGCAGATTGGA +
Preference number: 2 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKNMNTD*LLRQIG
Trigger: TCCAATCTGCCTCAACAGTCAATCAGTGTTCATATT...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR GCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGATTGGATCTAAAACTTaGAGGGCAGAACAAAATGGC +
Preference number: 2 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALIGSKT*RAEQNG
Trigger: GCCATTTTGTTCTGCCCTGCAAGTTTTAGATCCAAT...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR TCA 90 bp CATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCACACTGATTGACTGTTaGGGCAGATTGGATCTAAAA +
Preference number: 2 (lower is better)
Translates to: HDCDAQHNNSRAGMPGSPTLIDC*GRLDLK
Trigger: TTTTAGATCCAATCTGCCTCAACAGTCAATCAGTGT...GGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR GCA 90 bp CATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCATTGGATCTAAAACTTaGAGGGCAGAACAAAATGGC +
Preference number: 2 (lower is better)
Translates to: HDCDAQHNNSRAGMPGSPIGSKT*RAEQNG
Trigger: GCCATTTTGTTCTGCCCTGCAAGTTTTAGATCCAAT...GGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR GCA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCATTCTAGGGCAGGCATaGCAGGGAGCCCCTCCCATG +
Preference number: 2 (lower is better)
Translates to: LVQTVLVLKATKAHISLPILGQA*QGAPPM
Trigger: CATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAAT...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR CCA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCCCCAGCTCCCACCGCTaGGCAAGGATCATTTTAAGG +
Preference number: 2 (lower is better)
Translates to: LVQTVLVLKATKAHISLPPSSHR*ARIILR
Trigger: CCTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGG...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR TCA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCAATATGAACACTGATTaGCTGTTGAGGCAGATTGGA +
Preference number: 2 (lower is better)
Translates to: LVQTVLVLKATKAHISLPNMNTD*LLRQIG
Trigger: TCCAATCTGCCTCAACAGTCAATCAGTGTTCATATT...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR-3UTR GCA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCATTGGATCTAAAACTTaGAGGGCAGAACAAAATGGC +
Preference number: 2 (lower is better)
Translates to: LVQTVLVLKATKAHISLPIGSKT*RAEQNG
Trigger: GCCATTTTGTTCTGCCCTGCAAGTTTTAGATCCAAT...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR CCA 72 bp AGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTaGGCAAGGATCATTTTAAGGATGGGTAGTCTGGGG +
Preference number: 3 (lower is better)
Translates to: SPSHALSPSSHR*ARIILRMGSLG
Trigger: CCCCAGACTACCCATCCTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR GCA 72 bp ACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATaGCAGGGAGCCCCTCCCATGCACTGTCTCCCAGCT +
Preference number: 3 (lower is better)
Translates to: TVMPNITILGQA*QGAPPMHCLPA
Trigger: AGCTGGGAGACAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
3UTR TCA 72 bp CAGATAGAATGCCTGGCCATAAATATGAACACTGATTaGCTGTTGAGGCAGATTGGATCTAAAACTTGCAGG +
Preference number: 3 (lower is better)
Translates to: QIECLAINMNTD*LLRQIGSKTCR
Trigger: CCTGCAAGTTTTAGATCCAATCTGCCTCAACAGTCAATCAGTGTTCATATTTATGGCCAGGCATTCTATCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp GGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTCCTCCACCACGCCCTTaGGCAGGGAGATGGCGACAG +
Preference number: 4 (lower is better)
Translates to: GAPPMHCLPAPTAGQGSFPPPRP*AGRWRQ
Trigger: CTGTCGCCATCTCCCTGCCCAAGGGCGTGGTGGAGG...AAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGAGGCCAGGCCTGTGCTaGGCTCTGCCAGTGTGGTCG +
Preference number: 4 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKRPGLC*ALPVWS
Trigger: CGACCACACTGGCAGAGCGCAGCACAGGCCTGGCCT...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp ACAGGAAGACTGAAGAGGGCTCGGGGCAAGGTGACAAAAAGAGCTAGGCTGCCCAGGCCAGGCCTGTGCTaGGCTCTGCCAGTGTGGTCG +
Preference number: 4 (lower is better)
Translates to: TGRLKRARGKVTKRARLPRPGLC*ALPVWS
Trigger: CGACCACACTGGCAGAGCGCAGCACAGGCCTGGCCT...GGGCAGCCTAGCTCTTTTTGTCACCTTGCCCCGAGCCCTCTTCAGTCTTCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGCTCAGCGCTCAGCACTaGCTTCGCCTGCGACGCTGT +
Preference number: 4 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALLSAQH*LRLRRC
Trigger: ACAGCGTCGCAGGCGAAGGCAGTGCTGAGCGCTGAG...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGCTCAGCGCTCAGCACTaGCTTCGCCTGCGACGCTGT +
Preference number: 4 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKLSAQH*LRLRRC
Trigger: ACAGCGTCGCAGGCGAAGGCAGTGCTGAGCGCTGAG...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp GGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTCTTGGTCAAAGGGGTTaGCCTCGGTGTCCCACTCGA +
Preference number: 4 (lower is better)
Translates to: GAPPMHCLPAPTAGQGSFLGQRG*PRCPTR
Trigger: TCGAGTGGGACACCGAGGGCAACCCCTTTGACCAAG...AAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp GGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTCCACCGCCTGGTCTTTaGCCATCGCCTGATATAGGC +
Preference number: 4 (lower is better)
Translates to: GAPPMHCLPAPTAGQGSFPPPGL*PSPDIG
Trigger: GCCTATATCAGGCGATGGCCAAAGACCAGGCGGTGG...AAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp ACAGGAAGACTGAAGAGGGCTCGGGGCAAGGTGACAAAAAGAGCTAGGCTGCCCCCTCCACCACGCCCTTaGGCAGGGAGATGGCGACAG +
Preference number: 4 (lower is better)
Translates to: TGRLKRARGKVTKRARLPPPPRP*AGRWRQ
Trigger: CTGTCGCCATCTCCCTGCCCAAGGGCGTGGTGGAGG...GGGCAGCCTAGCTCTTTTTGTCACCTTGCCCCGAGCCCTCTTCAGTCTTCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR TCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGTCGCCTGATATAGGCTaGAGGCCAGGCCTGTGCTGC +
Preference number: 4 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKSPDIG*RPGLCC
Trigger: GCAGCACAGGCCTGGCCTTCAGCCTATATCAGGCGA...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGTCGCCTGCGACGCTGTaGTGGCTTTACCACCCAGTG +
Preference number: 4 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALSPATL*WLYHPV
Trigger: CACTGGGTGGTAAAGCCACCACAGCGTCGCAGGCGA...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR TCA 90 bp ACAGGAAGACTGAAGAGGGCTCGGGGCAAGGTGACAAAAAGAGCTAGGCTGCCCTCGCCTGATATAGGCTaGAGGCCAGGCCTGTGCTGC +
Preference number: 4 (lower is better)
Translates to: TGRLKRARGKVTKRARLPSPDIG*RPGLCC
Trigger: GCAGCACAGGCCTGGCCTTCAGCCTATATCAGGCGA...GGGCAGCCTAGCTCTTTTTGTCACCTTGCCCCGAGCCCTCTTCAGTCTTCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGCTTGGTCAAAGGGGTTaGCCTCGGTGTCCCACTCGA +
Preference number: 4 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALLGQRG*PRCPTR
Trigger: TCGAGTGGGACACCGAGGGCAACCCCTTTGACCAAG...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGCCTTGGGCAGGGAGATaGCGACAGCCTTCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKPWAGR*RQPSSA
Trigger: TGCAGAAGAAGGCTGTCGCCATCTCCCTGCCCAAGG...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp GGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTCGAAGGCAGTGGCATaGAACACACTGGCTAGGTAC +
Preference number: 4 (lower is better)
Translates to: GAPPMHCLPAPTAGQGSFSKAVA*NTLARY
Trigger: GTACCTAGCCAGTGTGTTCCATGCCACTGCCTTCGA...AAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR TCA 90 bp CATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCGCCTGATATAGGCTaGAGGCCAGGCCTGTGCTGC +
Preference number: 4 (lower is better)
Translates to: HDCDAQHNNSRAGMPGSPSPDIG*RPGLCC
Trigger: GCAGCACAGGCCTGGCCTTCAGCCTATATCAGGCGA...GGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR TCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGAGCAAGGAGCCGCTCTaGTTATCTCGCACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALSKEPL*LSRTRK
Trigger: CTTCCTGGTGCGAGATAATCAGAGCGGCTCCTTGCT...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGCCAAGAGGCATAAGGTaGCCAGAAGGAGAGAGCGCA +
Preference number: 4 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALPRGIR*PEGESA
Trigger: TGCGCTCTCTCCTTCTGGGCACCTTATGCCTCTTGG...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGGCGACAGCCTTCTTCTaGATCTTTCCCATCCAGGCC +
Preference number: 4 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKATAFF*IFPIQA
Trigger: GGCCTGGATGGGAAAGATGCAGAAGAAGGCTGTCGC...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGCCTGCCAGATGTTTCTaGAGGTCATGGGTCACCTCC +
Preference number: 4 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALPARCF*RSWVTS
Trigger: GGAGGTGACCCATGACCTGCAGAAACATCTGGCAGG...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp ACAGGAAGACTGAAGAGGGCTCGGGGCAAGGTGACAAAAAGAGCTAGGCTGCCCCTTGGTCAAAGGGGTTaGCCTCGGTGTCCCACTCGA +
Preference number: 4 (lower is better)
Translates to: TGRLKRARGKVTKRARLPLGQRG*PRCPTR
Trigger: TCGAGTGGGACACCGAGGGCAACCCCTTTGACCAAG...GGGCAGCCTAGCTCTTTTTGTCACCTTGCCCCGAGCCCTCTTCAGTCTTCCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGCCTTCAGCTGCTCCTTaGTCAGCAGCTTCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKPSAAP*SAASPS
Trigger: GCTTGGAGAAGCTGCTGACCAAGGAGCAGCTGAAGG...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGGGTACAGGTCCTTCTTaGCAGACATGCGCGATAGGT +
Preference number: 4 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKGTGPS*QTCAIG
Trigger: ACCTATCGCGCATGTCTGGCAAGAAGGACCTGTACC...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp CATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCCCACCGCCTGGTCTTTaGCCATCGCCTGATATAGGC +
Preference number: 4 (lower is better)
Translates to: HDCDAQHNNSRAGMPGSPPPPGL*PSPDIG
Trigger: GCCTATATCAGGCGATGGCCAAAGACCAGGCGGTGG...GGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATG
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGTCGAAGGCAGTGGCATaGAACACACTGGCTAGGTAC +
Preference number: 4 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALSKAVA*NTLARY
Trigger: GTACCTAGCCAGTGTGTTCCATGCCACTGCCTTCGA...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR TCA 90 bp CATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCAGCAAGGAGCCGCTCTaGTTATCTCGCACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: HDCDAQHNNSRAGMPGSPSKEPL*LSRTRK
Trigger: CTTCCTGGTGCGAGATAATCAGAGCGGCTCCTTGCT...GGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp CATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCGCGACAGCCTTCTTCTaGATCTTTCCCATCCAGGCC +
Preference number: 4 (lower is better)
Translates to: HDCDAQHNNSRAGMPGSPATAFF*IFPIQA
Trigger: GGCCTGGATGGGAAAGATGCAGAAGAAGGCTGTCGC...GGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGCCTCCACCACGCCCTTaGGCAGGGAGATGGCGACAG +
Preference number: 4 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGPPPRP*AGRWRQ
Trigger: CTGTCGCCATCTCCCTGCCCAAGGGCGTGGTGGAGG...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp CATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCCCCACTCGAAGGCAGTaGCATGGAACACACTGGCTA +
Preference number: 4 (lower is better)
Translates to: HDCDAQHNNSRAGMPGSPPTRRQ*HGTHWL
Trigger: TAGCCAGTGTGTTCCATGCCACTGCCTTCGAGTGGG...GGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATG
56% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp CATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCGAAGGCAGTGGCATaGAACACACTGGCTAGGTAC +
Preference number: 4 (lower is better)
Translates to: HDCDAQHNNSRAGMPGSPSKAVA*NTLARY
Trigger: GTACCTAGCCAGTGTGTTCCATGCCACTGCCTTCGA...GGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR TCA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGTCGCCTGATATAGGCTaGAGGCCAGGCCTGTGCTGC +
Preference number: 4 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGSPDIG*RPGLCC
Trigger: GCAGCACAGGCCTGGCCTTCAGCCTATATCAGGCGA...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR TCA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGGAGCGGGTCACCATaGAGCCACGGTTGTCCACCA +
Preference number: 4 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGRSGSP*SHGCPP
Trigger: TGGTGGACAACCGTGGCTTCATGGTGACCCGCTCCT...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGCTTCTCATCCCAGTGTaGCTTAAAGAACATGGCGTT +
Preference number: 4 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALLLIPV*LKEHGV
Trigger: AACGCCATGTTCTTTAAGCCACACTGGGATGAGAAG...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGCTTCTCATCCCAGTGTaGCTTAAAGAACATGGCGTT +
Preference number: 4 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKLLIPV*LKEHGV
Trigger: AACGCCATGTTCTTTAAGCCACACTGGGATGAGAAG...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGCCACCGCCTGGTCTTTaGCCATCGCCTGATATAGGC +
Preference number: 4 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGPPPGL*PSPDIG
Trigger: GCCTATATCAGGCGATGGCCAAAGACCAGGCGGTGG...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGCCTTGGGCAGGGAGATaGCGACAGCCTTCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGPWAGR*RQPSSA
Trigger: TGCAGAAGAAGGCTGTCGCCATCTCCCTGCCCAAGG...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACCCTCCACCACGCCCTTaGGCAGGGAGATGGCGACAG +
Preference number: 4 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHPPPRP*AGRWRQ
Trigger: CTGTCGCCATCTCCCTGCCCAAGGGCGTGGTGGAGG...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACCTCAGCGCTCAGCACTaGCTTCGCCTGCGACGCTGT +
Preference number: 4 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHLSAQH*LRLRRC
Trigger: ACAGCGTCGCAGGCGAAGGCAGTGCTGAGCGCTGAG...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp CATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCCTTCTCATCCCAGTGTaGCTTAAAGAACATGGCGTT +
Preference number: 4 (lower is better)
Translates to: HDCDAQHNNSRAGMPGSPLLIPV*LKEHGV
Trigger: AACGCCATGTTCTTTAAGCCACACTGGGATGAGAAG...GGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGCCTTCAGCTGCTCCTTaGTCAGCAGCTTCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGPSAAP*SAASPS
Trigger: GCTTGGAGAAGCTGCTGACCAAGGAGCAGCTGAAGG...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGCCCACTCGAAGGCAGTaGCATGGAACACACTGGCTA +
Preference number: 4 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGPTRRQ*HGTHWL
Trigger: TAGCCAGTGTGTTCCATGCCACTGCCTTCGAGTGGG...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGGGTACAGGTCCTTCTTaGCAGACATGCGCGATAGGT +
Preference number: 4 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGGTGPS*QTCAIG
Trigger: ACCTATCGCGCATGTCTGGCAAGAAGGACCTGTACC...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCTCGCCTGCGACGCTGTaGTGGCTTTACCACCCAGTG +
Preference number: 4 (lower is better)
Translates to: LVQTVLVLKATKAHISLPSPATL*WLYHPV
Trigger: CACTGGGTGGTAAAGCCACCACAGCGTCGCAGGCGA...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACCCTTGGGCAGGGAGATaGCGACAGCCTTCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHPWAGR*RQPSSA
Trigger: TGCAGAAGAAGGCTGTCGCCATCTCCCTGCCCAAGG...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR TCA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACAGCAAGGAGCCGCTCTaGTTATCTCGCACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHSKEPL*LSRTRK
Trigger: CTTCCTGGTGCGAGATAATCAGAGCGGCTCCTTGCT...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACCCAAGAGGCATAAGGTaGCCAGAAGGAGAGAGCGCA +
Preference number: 4 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHPRGIR*PEGESA
Trigger: TGCGCTCTCTCCTTCTGGGCACCTTATGCCTCTTGG...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACGCGACAGCCTTCTTCTaGATCTTTCCCATCCAGGCC +
Preference number: 4 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHATAFF*IFPIQA
Trigger: GGCCTGGATGGGAAAGATGCAGAAGAAGGCTGTCGC...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACCCTGCCAGATGTTTCTaGAGGTCATGGGTCACCTCC +
Preference number: 4 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHPARCF*RSWVTS
Trigger: GGAGGTGACCCATGACCTGCAGAAACATCTGGCAGG...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACCCTTCAGCTGCTCCTTaGTCAGCAGCTTCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHPSAAP*SAASPS
Trigger: GCTTGGAGAAGCTGCTGACCAAGGAGCAGCTGAAGG...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCCCTTGGGCAGGGAGATaGCGACAGCCTTCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: LVQTVLVLKATKAHISLPPWAGR*RQPSSA
Trigger: TGCAGAAGAAGGCTGTCGCCATCTCCCTGCCCAAGG...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR TCA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCAGCAAGGAGCCGCTCTaGTTATCTCGCACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: LVQTVLVLKATKAHISLPSKEPL*LSRTRK
Trigger: CTTCCTGGTGCGAGATAATCAGAGCGGCTCCTTGCT...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCCCAAGAGGCATAAGGTaGCCAGAAGGAGAGAGCGCA +
Preference number: 4 (lower is better)
Translates to: LVQTVLVLKATKAHISLPPRGIR*PEGESA
Trigger: TGCGCTCTCTCCTTCTGGGCACCTTATGCCTCTTGG...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCCCTGCCAGATGTTTCTaGAGGTCATGGGTCACCTCC +
Preference number: 4 (lower is better)
Translates to: LVQTVLVLKATKAHISLPPARCF*RSWVTS
Trigger: GGAGGTGACCCATGACCTGCAGAAACATCTGGCAGG...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR GCA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACGGTACAGGTCCTTCTTaGCAGACATGCGCGATAGGT +
Preference number: 4 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHGTGPS*QTCAIG
Trigger: ACCTATCGCGCATGTCTGGCAAGAAGGACCTGTACC...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CCA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCTCGAAGGCAGTGGCATaGAACACACTGGCTAGGTAC +
Preference number: 4 (lower is better)
Translates to: LVQTVLVLKATKAHISLPSKAVA*NTLARY
Trigger: GTACCTAGCCAGTGTGTTCCATGCCACTGCCTTCGA...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp GGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTGTGACCTCAGGCAGCTaGCCGTCCGTGGTCTGCGAG +
Preference number: 5 (lower is better)
Translates to: GAPPMHCLPAPTAGQGSFVTSGS*PSVVCE
Trigger: CTCGCAGACCACGGACGGCAAGCTGCCTGAGGTCAC...AAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGGTGACCTCAGGCAGCTaGCCGTCCGTGGTCTGCGAG +
Preference number: 5 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALVTSGS*PSVVCE
Trigger: CTCGCAGACCACGGACGGCAAGCTGCCTGAGGTCAC...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp GGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTGTGCGCTCCACATCCTaGGTGACCTCAGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: GAPPMHCLPAPTAGQGSFVRSTS*VTSGSL
Trigger: CAAGCTGCCTGAGGTCACCAAGGATGTGGAGCGCAC...AAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp GGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTGCGCCCGTAGATGTCTaGGTCAAAGGGGTTGCCCTC +
Preference number: 5 (lower is better)
Translates to: GAPPMHCLPAPTAGQGSFAPVDV*VKGVAL
Trigger: GAGGGCAACCCCTTTGACCAAGACATCTACGGGCGC...AAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp GGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTAGGTCTGCCTTGTTCTaGTCGATGGCCTCGGTCAGG +
Preference number: 5 (lower is better)
Translates to: GAPPMHCLPAPTAGQGSFRSALF*SMASVR
Trigger: CCTGACCGAGGCCATCGACAAGAACAAGGCAGACCT...AAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS GCA 90 bp ATGGCGACAGCCTTCTTCTGCATCTTTCCCATCCAGGCCTTCAGCTaGTCCTTGGTCAGCAGCTTCTCCAAGCGCTCGAGCGGCTCCACG +
Preference number: 5 (lower is better)
Translates to: MATAFFCIFPIQAFS*SLVSSFSKRSSGST
Trigger: CGTGGAGCCGCTCGAGCGCTTGGAGAAGCTGCTGACCAAGGAGCAGCTGAAGGCCTGGATGGGAAAGATGCAGAAGAAGGCTGTCGCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGGTGCGCTCCACATCCTaGGTGACCTCAGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALVRSTS*VTSGSL
Trigger: CAAGCTGCCTGAGGTCACCAAGGATGTGGAGCGCAC...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp GGAGCCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTAGGTACAGGTCCTTCTaGCCAGACATGCGCGATAGG +
Preference number: 5 (lower is better)
Translates to: GAPPMHCLPAPTAGQGSFRYRSF*PDMRDR
Trigger: CCTATCGCGCATGTCTGGCAAGAAGGACCTGTACCT...AAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp GCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCTCCCATGCACTGGCGCCCGTAGATGTCTaGGTCAAAGGGGTTGCCCTC +
Preference number: 5 (lower is better)
Translates to: AQHNNSRAGMPGSPSHALAPVDV*VKGVAL
Trigger: GAGGGCAACCCCTTTGACCAAGACATCTACGGGCGC...CAGTGCATGGGAGGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGTGCAGGGCGCTGCGCTaGTCTCGGAAGTTGATCTTG +
Preference number: 5 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKCRALR*SRKLIL
Trigger: CAAGATCAACTTCCGAGACAAGCGCAGCGCCCTGCA...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGGCCTTCAGCTGCTCCTaGGTCAGCAGCTTCTCCAAG +
Preference number: 5 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKAFSCS*VSSFSK
Trigger: CTTGGAGAAGCTGCTGACCAAGGAGCAGCTGAAGGC...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp CCCCTCCCATGCACTGTCTCCCAGCTCCCACCGCTGGGCAAGGATCATTTTAAGAGGTCTGCCTTGTTCTaGTCGATGGCCTCGGTCAGG +
Preference number: 5 (lower is better)
Translates to: PLPCTVSQLPPLGKDHFKRSALF*SMASVR
Trigger: CCTGACCGAGGCCATCGACAAGAACAAGGCAGACCT...CTTAAAATGATCCTTGCCCAGCGGTGGGAGCTGGGAGACAGTGCATGGGAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp ACAGGAAGACTGAAGAGGGCTCGGGGCAAGGTGACAAAAAGAGCTAGGCTGCCCTCTTGGTCAAAGGGGTaGCCCTCGGTGTCCCACTCG +
Preference number: 5 (lower is better)
Translates to: TGRLKRARGKVTKRARLPSWSKG*PSVSHS
Trigger: CGAGTGGGACACCGAGGGCAACCCCTTTGACCAAGA...GGGCAGCCTAGCTCTTTTTGTCACCTTGCCCCGAGCCCTCTTCAGTCTTCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp ACAGGAAGACTGAAGAGGGCTCGGGGCAAGGTGACAAAAAGAGCTAGGCTGCCCGCGCCCGTAGATGTCTaGGTCAAAGGGGTTGCCCTC +
Preference number: 5 (lower is better)
Translates to: TGRLKRARGKVTKRARLPAPVDV*VKGVAL
Trigger: GAGGGCAACCCCTTTGACCAAGACATCTACGGGCGC...GGGCAGCCTAGCTCTTTTTGTCACCTTGCCCCGAGCCCTCTTCAGTCTTCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp ACAGGAAGACTGAAGAGGGCTCGGGGCAAGGTGACAAAAAGAGCTAGGCTGCCCGCCTTCAGCTGCTCCTaGGTCAGCAGCTTCTCCAAG +
Preference number: 5 (lower is better)
Translates to: TGRLKRARGKVTKRARLPAFSCS*VSSFSK
Trigger: CTTGGAGAAGCTGCTGACCAAGGAGCAGCTGAAGGC...GGGCAGCCTAGCTCTTTTTGTCACCTTGCCCCGAGCCCTCTTCAGTCTTCCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp CATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGCCCCGCCTTCAGCTGCTCCTaGGTCAGCAGCTTCTCCAAG +
Preference number: 5 (lower is better)
Translates to: HDCDAQHNNSRAGMPGSPAFSCS*VSSFSK
Trigger: CTTGGAGAAGCTGCTGACCAAGGAGCAGCTGAAGGC...GGGGCTCCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGGTGCGCTCCACATCCTaGGTGACCTCAGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGVRSTS*VTSGSL
Trigger: CAAGCTGCCTGAGGTCACCAAGGATGTGGAGCGCAC...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGTCTTGGTCAAAGGGGTaGCCCTCGGTGTCCCACTCG +
Preference number: 5 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGSWSKG*PSVSHS
Trigger: CGAGTGGGACACCGAGGGCAACCCCTTTGACCAAGA...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp AAAGTTCATGACTGTGATGCCCAACATAACAATTCTAGGGCAGGCATGCCAGGGAGGTCTGCCTTGTTCTaGTCGATGGCCTCGGTCAGG +
Preference number: 5 (lower is better)
Translates to: KVHDCDAQHNNSRAGMPGRSALF*SMASVR
Trigger: CCTGACCGAGGCCATCGACAAGAACAAGGCAGACCT...CCCTGGCATGCCTGCCCTAGAATTGTTATGTTGGGCATCACAGTCATGAACTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACTCTTGGTCAAAGGGGTaGCCCTCGGTGTCCCACTCG +
Preference number: 5 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHSWSKG*PSVSHS
Trigger: CGAGTGGGACACCGAGGGCAACCCCTTTGACCAAGA...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACTGCAGGGCGCTGCGCTaGTCTCGGAAGTTGATCTTG +
Preference number: 5 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHCRALR*SRKLIL
Trigger: CAAGATCAACTTCCGAGACAAGCGCAGCGCCCTGCA...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCGTGCGCTCCACATCCTaGGTGACCTCAGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: LVQTVLVLKATKAHISLPVRSTS*VTSGSL
Trigger: CAAGCTGCCTGAGGTCACCAAGGATGTGGAGCGCAC...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCGCGCCCGTAGATGTCTaGGTCAAAGGGGTTGCCCTC +
Preference number: 5 (lower is better)
Translates to: LVQTVLVLKATKAHISLPAPVDV*VKGVAL
Trigger: GAGGGCAACCCCTTTGACCAAGACATCTACGGGCGC...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCTGCAGGGCGCTGCGCTaGTCTCGGAAGTTGATCTTG +
Preference number: 5 (lower is better)
Translates to: LVQTVLVLKATKAHISLPCRALR*SRKLIL
Trigger: CAAGATCAACTTCCGAGACAAGCGCAGCGCCCTGCA...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCGCCTTCAGCTGCTCCTaGGTCAGCAGCTTCTCCAAG +
Preference number: 5 (lower is better)
Translates to: LVQTVLVLKATKAHISLPAFSCS*VSSFSK
Trigger: CTTGGAGAAGCTGCTGACCAAGGAGCAGCTGAAGGC...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCAGGTCTGCCTTGTTCTaGTCGATGGCCTCGGTCAGG +
Preference number: 5 (lower is better)
Translates to: LVQTVLVLKATKAHISLPRSALF*SMASVR
Trigger: CCTGACCGAGGCCATCGACAAGAACAAGGCAGACCT...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp AGTGGATTCTGTCTAAAAATACCCACTCAGACATATGGGAATTCCGATCTGCACAGGTACAGGTCCTTCTaGCCAGACATGCGCGATAGG +
Preference number: 5 (lower is better)
Translates to: SGFCLKIPTQTYGNSDLHRYRSF*PDMRDR
Trigger: CCTATCGCGCATGTCTGGCAAGAAGGACCTGTACCT...GTGCAGATCGGAATTCCCATATGTCTGAGTGGGTATTTTTAGACAGAATCCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS-3UTR CAA 90 bp CTTGTACAAACTGTTCTCGTTTTGAAAGCAACAAAGGCTCATATTTCCCTTCCCAGGTACAGGTCCTTCTaGCCAGACATGCGCGATAGG +
Preference number: 5 (lower is better)
Translates to: LVQTVLVLKATKAHISLPRYRSF*PDMRDR
Trigger: CCTATCGCGCATGTCTGGCAAGAAGGACCTGTACCT...GGGAAGGGAAATATGAGCCTTTGTTGCTTTCAAAACGAGAACAGTTTGTACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS GCA 72 bp CACCTCCTCATCGCGCAGCTTCTCAGCGCTCAGCACTaGCTTCGCCTGCGACGCTGTGGTGGCTTTACCACC +
Preference number: 6 (lower is better)
Translates to: HLLIAQLLSAQH*LRLRRCGGFTT
Trigger: GGTGGTAAAGCCACCACAGCGTCGCAGGCGAAGGCAGTGCTGAGCGCTGAGAAGCTGCGCGATGAGGAGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000207989.2
ENSMUST00000208119.2
ENSMUST00000208749.2
CDS GCA 72 bp GCTCCTCGCGCCCGTAGATGTCTTGGTCAAAGGGGTTaGCCTCGGTGTCCCACTCGAAGGCAGTGGCATGGA +
Preference number: 6 (lower is better)
Translates to: APRARRCLGQRG*PRCPTRRQWHG
Trigger: TCCATGCCACTGCCTTCGAGTGGGACACCGAGGGCAACCCCTTTGACCAAGACATCTACGGGCGCGAGGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS CCA 72 bp CATGGGTCACCTCCACCACGCCCTTGGGCAGGGAGATaGCGACAGCCTTCTTCTGCATCTTTCCCATCCAGG +
Preference number: 6 (lower is better)
Translates to: HGSPPPRPWAGR*RQPSSASFPSR
Trigger: CCTGGATGGGAAAGATGCAGAAGAAGGCTGTCGCCATCTCCCTGCCCAAGGGCGTGGTGGAGGTGACCCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2
CDS GCA 72 bp GCCTTCTTCTGCATCTTTCCCATCCAGGCCTTCAGCTaGTCCTTGGTCAGCAGCTTCTCCAAGCGCTCGAGC +
Preference number: 6 (lower is better)
Translates to: AFFCIFPIQAFS*SLVSSFSKRSS
Trigger: GCTCGAGCGCTTGGAGAAGCTGCTGACCAAGGAGCAGCTGAAGGCCTGGATGGGAAAGATGCAGAAGAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000094154.6
ENSMUST00000169437.9
ENSMUST00000207849.2
ENSMUST00000208119.2