Pregenerated sensors for SERPINB8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026315Ensembl transcript IDs: ENSMUST00000000514.11, ENSMUST00000112706.4, ENSMUST00000123086.2
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTGAGTCCTTGAACTTGCACTTGAACTTTATGGAAAGAGTTGCCTaGACCCTGACTCCTACAGGAGTACTGGGTAGCACTGATGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: TESLNLHLNFMERVA*TLTPTGVLGSTDGR Trigger: CCTTCCATCAGTGCTACCCAGTACTCCTGTAGGAGTCAGGGTTCAGGCAACTCTTTCCATAAAGTTCAAGTGCAAGTTCAAGGACTCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR GCA 90 bp | CTCAGACATCCCAAATCAAGTATGGCCTTCTTGTCAGCTCAAAACTaGCATACAGCCATACACCGCATTGGGACAGTCAGCAACAATAGT | + |
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Preference number: 1 (lower is better) Translates to: LRHPKSSMAFLSAQN*HTAIHRIGTVSNNS Trigger: ACTATTGTTGCTGACTGTCCCAATGCGGTGTATGGCTGTATGGCAGTTTTGAGCTGACAAGAAGGCCATACTTGATTTGGGATGTCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR TCA 90 bp | ACACTTCAGAGCCTTATCTCTCAGCTCCATCCTGAAGGTTCTCACTaGGTCCTTGAACTTGCACTTGAACTTTATGGAAAGAGTTGCCTG | + |
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Preference number: 1 (lower is better) Translates to: TLQSLISQLHPEGSH*VLELALELYGKSCL Trigger: CAGGCAACTCTTTCCATAAAGTTCAAGTGCAAGTTCAAGGACTCAGTGAGAACCTTCAGGATGGAGCTGAGAGATAAGGCTCTGAAGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR GCA 90 bp | CAGGTTGGCACCATCATGTCTATTTTTATAGGGTTCTTAGGGCTGTaGCCACGGTCTTGTGCTTGTTATGCAAATGCAAACACTTCACCA | + |
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Preference number: 1 (lower is better) Translates to: QVGTIMSIFIGFLGL*PRSCACYANANTSP Trigger: TGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCACAGCCCTAAGAACCCTATAAAAATAGACATGATGGTGCCAACCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR CCA 90 bp | ACAGTTCCTGAGCTGAAGGTGGCCCAAGGATACAGTCTGTACAGCTaGGTGAGATTTAATGAAGAACTACATTGTGCAGGATTCATGGAA | + |
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Preference number: 1 (lower is better) Translates to: TVPELKVAQGYSLYS*VRFNEELHCAGFME Trigger: TTCCATGAATCCTGCACAATGTAGTTCTTCATTAAATCTCACCCAGCTGTACAGACTGTATCCTTGGGCCACCTTCAGCTCAGGAACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR GCA 90 bp | TTGGTTACCTCATACTTAGTGGTCAGTCATAGGAACAAAAACTCATaGAGGGACACTGAAGAGACACAGCAGACTGCATGTGTATGTCAA | + |
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Preference number: 1 (lower is better) Translates to: LVTSYLVVSHRNKNS*RDTEETQQTACVCQ Trigger: TTGACATACACATGCAGTCTGCTGTGTCTCTTCAGTGTCCCTGCATGAGTTTTTGTTCCTATGACTGACCACTAAGTATGAGGTAACCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR CCA 90 bp | CTGCATGTGTATGTCAATCCGTTTAGATGTATATGTATAAAACTATaGTTAAAGATGAGGGGGCTCGGATTTGGAGGATGGACACGGGAG | + |
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Preference number: 1 (lower is better) Translates to: LHVYVNPFRCICIKL*LKMRGLGFGGWTRE Trigger: CTCCCGTGTCCATCCTCCAAATCCGAGCCCCCTCATCTTTAACCATAGTTTTATACATATACATCTAAACGGATTGACATACACATGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR TCA 90 bp | ACATACACACAAACACACACAGAGAGACGTATAAATACAACCCACTaGGTCTATGTACAATGCTGGCATGCATATGCATTTAGGGCATTG | + |
|
Preference number: 1 (lower is better) Translates to: TYTQTHTERRINTTH*VYVQCWHAYAFRAL Trigger: CAATGCCCTAAATGCATATGCATGCCAGCATTGTACATAGACTCAGTGGGTTGTATTTATACGTCTCTCTGTGTGTGTTTGTGTGTATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR TCA 90 bp | AATCAATCACATTCACCTTTCTTGACTTTGGTTGTTGCTGTTGTTTaGGGCAGAGTCCCCTGTATCATTTTGGATGATCTTGAATGTGTG | + |
|
Preference number: 1 (lower is better) Translates to: NQSHSPFLTLVVAVV*GRVPCIILDDLECV Trigger: CACACATTCAAGATCATCCAAAATGATACAGGGGACTCTGCCTCAAACAACAGCAACAACCAAAGTCAAGAAAGGTGAATGTGATTGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR GCA 90 bp | TTTAATTTTCCAAATTGTCAAAGTAGGTTCAATTACAGAAAACTTTaGCCCATCCTGAAATTCAATGCACAGCAAGATGTTGCCACTGAA | + |
|
Preference number: 1 (lower is better) Translates to: FNFPNCQSRFNYRKL*PILKFNAQQDVATE Trigger: TTCAGTGGCAACATCTTGCTGTGCATTGAATTTCAGGATGGGGCAAAGTTTTCTGTAATTGAACCTACTTTGACAATTTGGAAAATTAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR-3UTR CCA 90 bp | GTGAATGGGGGACCTCCACTGGCATTCCCTGGTAAGTCTGTCAGTGGTGGGGGTCAGCACTTTAGGGTCTaGGTTGTTAGTATCGCTGGT | + |
|
Preference number: 2 (lower is better) Translates to: VNGGPPLAFPGKSVSGGGQHFRV*VVSIAG Trigger: ACCAGCGATACTAACAACCCAGACCCTAAAGTGCTG...ACCCCCACCACTGACAGACTTACCAGGGAATGCCAGTGGAGGTCCCCCATTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR-3UTR CCA 90 bp | AAGGAATGGGTGGTCAGCACAGAACCTTGGTTCTGTTCTACAGCACCGGGCGTTTCCACAAAGCACTTGTaGGCAACCTTGGACACGGGC | + |
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Preference number: 2 (lower is better) Translates to: KEWVVSTEPWFCSTAPGVSTKHL*ATLDTG Trigger: GCCCGTGTCCAAGGTTGCCCACAAGTGCTTTGTGGA...AACGCCCGGTGCTGTAGAACAGAACCAAGGTTCTGTGCTGACCACCCATTCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123086.2 |
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| 3UTR-3UTR TCA 90 bp | AGATGGAAATCAGATCAAAGTTCCCAGAGCCCCACTTTCTCAGCTCCTGGATTGATGGAAAGAGTTGCCTaGACCCTGACTCCTACAGGA | + |
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Preference number: 2 (lower is better) Translates to: RWKSDQSSQSPTFSAPGLMERVA*TLTPTG Trigger: TCCTGTAGGAGTCAGGGTTCAGGCAACTCTTTCCAT...CAATCCAGGAGCTGAGAAAGTGGGGCTCTGGGAACTTTGATCTGATTTCCATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR-3UTR TCA 90 bp | CGCATTGGGACAGTCAGCAACAATAGTCACCAACTACTAAGCATACTCTCTTTAGTTGTTGCTGTTGTTTaGGGCAGAGTCCCCTGTATC | + |
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Preference number: 2 (lower is better) Translates to: RIGTVSNNSHQLLSILSLVVAVV*GRVPCI Trigger: GATACAGGGGACTCTGCCTCAAACAACAGCAACAAC...TAAAGAGAGTATGCTTAGTAGTTGGTGACTATTGTTGCTGACTGTCCCAATGCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR-3UTR GCA 90 bp | AAAAACTCATGCAGGGACACTGAAGAGACACAGCAGACTGCATGTGTATGTCAATATCCAGGGGAAATTTaGAGGTGTGGCAGACCTGTT | + |
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Preference number: 2 (lower is better) Translates to: KNSCRDTEETQQTACVCQYPGEI*RCGRPV Trigger: AACAGGTCTGCCACACCTGCAAATTTCCCCTGGATA...TTGACATACACATGCAGTCTGCTGTGTCTCTTCAGTGTCCCTGCATGAGTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR-3UTR TCA 90 bp | GTGATGTTTCCATTAGAAAGAGTAGGAGGAGATAAGAAAAACACTTGGAGCTTTGAGTTGCCTGAACCCTaGCTCCTACAGGAGTACTGG | + |
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Preference number: 2 (lower is better) Translates to: VMFPLERVGGDKKNTWSFELPEP*LLQEYW Trigger: CCAGTACTCCTGTAGGAGTCAGGGTTCAGGCAACTC...AAAGCTCCAAGTGTTTTTCTTATCTCCTCCTACTCTTTCTAATGGAAACATCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR-3UTR CCA 90 bp | TCAGTGAACAACAGGAACAATACAGAAATGGACACAGTATTCCACAACATTAATATAACCAACCCTGTTTaGAAAGCACAGTTCCTGAGC | + |
|
Preference number: 2 (lower is better) Translates to: SVNNRNNTEMDTVFHNINITNPV*KAQFLS Trigger: GCTCAGGAACTGTGCTTTCCAAACAGGGTTGGTTAT...ATTAATGTTGTGGAATACTGTGTCCATTTCTGTATTGTTCCTGTTGTTCACTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR-3UTR TCA 90 bp | TCAGTGAACAACAGGAACAATACAGAAATGGACACAGTATTCCACAACATTAATCACATTCACCTTTCTTaGCTTTGGTTGTTGCTGTTG | + |
|
Preference number: 2 (lower is better) Translates to: SVNNRNNTEMDTVFHNINHIHLS*LWLLLL Trigger: CAACAGCAACAACCAAAGTCAAGAAAGGTGAATGTG...ATTAATGTTGTGGAATACTGTGTCCATTTCTGTATTGTTCCTGTTGTTCACTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR-3UTR GCA 90 bp | TCAGTGAACAACAGGAACAATACAGAAATGGACACAGTATTCCACAACATTAATCTTGACTTTGGTTGTTaGTGTTGTTTGAGGCAGAGT | + |
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Preference number: 2 (lower is better) Translates to: SVNNRNNTEMDTVFHNINLDFGC*CCLRQS Trigger: ACTCTGCCTCAAACAACAGCAACAACCAAAGTCAAG...ATTAATGTTGTGGAATACTGTGTCCATTTCTGTATTGTTCCTGTTGTTCACTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR-3UTR CCA 90 bp | AGTAGGTTCAATTACAGAAAACTTTGCCCCATCCTGAAATTCAATGCACAGCAATCATGTCTGAGCATGTaGTTAATTATGGTTTGTAAG | + |
|
Preference number: 2 (lower is better) Translates to: SRFNYRKLCPILKFNAQQSCLSM*LIMVCK Trigger: CTTACAAACCATAATTAACCACATGCTCAGACATGA...TTGCTGTGCATTGAATTTCAGGATGGGGCAAAGTTTTCTGTAATTGAACCTACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR-3UTR CCA 90 bp | TCAGTGAACAACAGGAACAATACAGAAATGGACACAGTATTCCACAACATTAATTACAGTCTGTACAGCTaGGTGAGATTTAATGAAGAA | + |
|
Preference number: 2 (lower is better) Translates to: SVNNRNNTEMDTVFHNINYSLYS*VRFNEE Trigger: TTCTTCATTAAATCTCACCCAGCTGTACAGACTGTA...ATTAATGTTGTGGAATACTGTGTCCATTTCTGTATTGTTCCTGTTGTTCACTGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR-3UTR CAA 90 bp | GTGAATGGGGGACCTCCACTGGCATTCCCTGGTAAGTCTGTCAGTGGTGGGGGTGGTTGTTGCTGTTGTTaGAGGCAGAGTCCCCTGTAT | + |
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Preference number: 3 (lower is better) Translates to: VNGGPPLAFPGKSVSGGGGCCCC*RQSPLY Trigger: ATACAGGGGACTCTGCCTCAAACAACAGCAACAACC...ACCCCCACCACTGACAGACTTACCAGGGAATGCCAGTGGAGGTCCCCCATTCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR GCA 72 bp | CCAGGGGAAATTTGCAGGTGTGGCAGACCTGTTCTGTaGCTTAACTGCAGATGGCATCAGGGGGTAGATGCA | + |
|
Preference number: 3 (lower is better) Translates to: PGEICRCGRPVL*LNCRWHQGVDA Trigger: TGCATCTACCCCCTGATGCCATCTGCAGTTAAGGCACAGAACAGGTCTGCCACACCTGCAAATTTCCCCTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR GCA 72 bp | CCCAAATCAAGTATGGCCTTCTTGTCAGCTCAAAACTaGCATACAGCCATACACCGCATTGGGACAGTCAGC | + |
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Preference number: 3 (lower is better) Translates to: PKSSMAFLSAQN*HTAIHRIGTVS Trigger: GCTGACTGTCCCAATGCGGTGTATGGCTGTATGGCAGTTTTGAGCTGACAAGAAGGCCATACTTGATTTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR CCA 72 bp | AAAGTTCCCAGAGCCCCACTTTCTCAGCTCCTGGATTaGGTCATAACCAACCCTGTTTGGAAAGCACAGTTC | + |
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Preference number: 3 (lower is better) Translates to: KVPRAPLSQLLD*VITNPVWKAQF Trigger: GAACTGTGCTTTCCAAACAGGGTTGGTTATGACCCAATCCAGGAGCTGAGAAAGTGGGGCTCTGGGAACTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR CCA 72 bp | AGGTGTGGCAGACCTGTTCTGTGCCTTAACTGCAGATaGCATCAGGGGGTAGATGCATGTTTCAGAACTTAC | + |
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Preference number: 3 (lower is better) Translates to: RCGRPVLCLNCR*HQGVDACFRTY Trigger: GTAAGTTCTGAAACATGCATCTACCCCCTGATGCCATCTGCAGTTAAGGCACAGAACAGGTCTGCCACACCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR CCA 72 bp | ATGTGTGACCTACCTAGCCTGCACCTCCCAAATGCTTaGATCGGCAGGTTGGCACCATCATGTCTATTTTTA | + |
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Preference number: 3 (lower is better) Translates to: MCDLPSLHLPNA*IGRLAPSCLFL Trigger: TAAAAATAGACATGATGGTGCCAACCTGCCGATCCAAGCATTTGGGAGGTGCAGGCTAGGTAGGTCACACAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR CCA 72 bp | GAGCTGAAGGTGGCCCAAGGATACAGTCTGTACAGCTaGGTGAGATTTAATGAAGAACTACATTGTGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: ELKVAQGYSLYS*VRFNEELHCAG Trigger: TCCTGCACAATGTAGTTCTTCATTAAATCTCACCCAGCTGTACAGACTGTATCCTTGGGCCACCTTCAGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR TCA 72 bp | TTGAACTTGCACTTGAACTTTATGGAAAGAGTTGCCTaGACCCTGACTCCTACAGGAGTACTGGGTAGCACT | + |
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Preference number: 3 (lower is better) Translates to: LNLHLNFMERVA*TLTPTGVLGST Trigger: AGTGCTACCCAGTACTCCTGTAGGAGTCAGGGTTCAGGCAACTCTTTCCATAAAGTTCAAGTGCAAGTTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR CCA 72 bp | GTGAAGAGATTCACCTCAGACATCCCAAATCAAGTATaGCCTTCTTGTCAGCTCAAAACTGCCATACAGCCA | + |
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Preference number: 3 (lower is better) Translates to: VKRFTSDIPNQV*PSCQLKTAIQP Trigger: TGGCTGTATGGCAGTTTTGAGCTGACAAGAAGGCCATACTTGATTTGGGATGTCTGAGGTGAATCTCTTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR TCA 72 bp | AGCCTTATCTCTCAGCTCCATCCTGAAGGTTCTCACTaGGTCCTTGAACTTGCACTTGAACTTTATGGAAAG | + |
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Preference number: 3 (lower is better) Translates to: SLISQLHPEGSH*VLELALELYGK Trigger: CTTTCCATAAAGTTCAAGTGCAAGTTCAAGGACTCAGTGAGAACCTTCAGGATGGAGCTGAGAGATAAGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR-3UTR CAA 90 bp | AGTAGGTTCAATTACAGAAAACTTTGCCCCATCCTGAAATTCAATGCACAGCAAGGTTGTTGCTGTTGTTaGAGGCAGAGTCCCCTGTAT | + |
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Preference number: 3 (lower is better) Translates to: SRFNYRKLCPILKFNAQQGCCCC*RQSPLY Trigger: ATACAGGGGACTCTGCCTCAAACAACAGCAACAACC...TTGCTGTGCATTGAATTTCAGGATGGGGCAAAGTTTTCTGTAATTGAACCTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR-3UTR CAA 90 bp | GACAGAGAATTAGTCATCATCAGGGGTGTGCCCCAGAATTGGTTACCTCATACTACTGAGTCCTTGAACTaGCACTTGAACTTTATGGAA | + |
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Preference number: 3 (lower is better) Translates to: DRELVIIRGVPQNWLPHTTESLN*HLNFME Trigger: TTCCATAAAGTTCAAGTGCAAGTTCAAGGACTCAGT...AGTATGAGGTAACCAATTCTGGGGCACACCCCTGATGATGACTAATTCTCTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR GCA 72 bp | TTTTATAGGGTTCTTAGGGCTGTGCCCACGGTCTTGTaGTTGTTATGCAAATGCAAACACTTCACCAATTCT | + |
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Preference number: 3 (lower is better) Translates to: FYRVLRAVPTVL*LLCKCKHFTNS Trigger: AGAATTGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCACAGCCCTAAGAACCCTATAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR GCA 72 bp | ACCATCATGTCTATTTTTATAGGGTTCTTAGGGCTGTaGCCACGGTCTTGTGCTTGTTATGCAAATGCAAAC | + |
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Preference number: 3 (lower is better) Translates to: TIMSIFIGFLGL*PRSCACYANAN Trigger: GTTTGCATTTGCATAACAAGCACAAGACCGTGGGCACAGCCCTAAGAACCCTATAAAAATAGACATGATGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR-3UTR CAA 90 bp | GTGATGTTTCCATTAGAAAGAGTAGGAGGAGATAAGAAAAACACTTGGAGCTTTCTTTGGTTGTTGCTGTaGTTTGAGGCAGAGTCCCCT | + |
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Preference number: 3 (lower is better) Translates to: VMFPLERVGGDKKNTWSFLWLLL*FEAESP Trigger: AGGGGACTCTGCCTCAAACAACAGCAACAACCAAAG...AAAGCTCCAAGTGTTTTTCTTATCTCCTCCTACTCTTTCTAATGGAAACATCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR-3UTR CAA 90 bp | GACAGAGAATTAGTCATCATCAGGGGTGTGCCCCAGAATTGGTTACCTCATACTTTTCTGGAGATCATTTaGGATGTCTTATCACATACC | + |
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Preference number: 3 (lower is better) Translates to: DRELVIIRGVPQNWLPHTFLEII*DVLSHT Trigger: GGTATGTGATAAGACATCCAAAATGATCTCCAGAAA...AGTATGAGGTAACCAATTCTGGGGCACACCCCTGATGATGACTAATTCTCTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR TCA 72 bp | TGGCATCAGGGGGTAGATGCATGTTTCAGAACTTACTaGACCGTGCATTCAATTATTCTGGTTCTATCCAAT | + |
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Preference number: 3 (lower is better) Translates to: WHQGVDACFRTY*TVHSIILVLSN Trigger: ATTGGATAGAACCAGAATAATTGAATGCACGGTTCAGTAAGTTCTGAAACATGCATCTACCCCCTGATGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
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| 3UTR-3UTR CAA 90 bp | GTGATGTTTCCATTAGAAAGAGTAGGAGGAGATAAGAAAAACACTTGGAGCTTTTCAAGTATGGCCTTCTaGTCAGCTCAAAACTGCCAT | + |
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Preference number: 3 (lower is better) Translates to: VMFPLERVGGDKKNTWSFSSMAF*SAQNCH Trigger: ATGGCAGTTTTGAGCTGACAAGAAGGCCATACTTGA...AAAGCTCCAAGTGTTTTTCTTATCTCCTCCTACTCTTTCTAATGGAAACATCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| 3UTR TCA 72 bp | CACCAACTACTAAGCATACTCTCTTTACTTTTACATTaGAATCACCTTGGCAAATTTGGTAGCATGGAATTT | + |
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Preference number: 3 (lower is better) Translates to: HQLLSILSLLLH*NHLGKFGSMEF Trigger: AAATTCCATGCTACCAAATTTGCCAAGGTGATTTCAATGTAAAAGTAAAGAGAGTATGCTTAGTAGTTGGTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS-3UTR CCA 90 bp | GTGAATGGGGGACCTCCACTGGCATTCCCTGGTAAGTCTGTCAGTGGTGGGGGTCTCCAAGGTAGACCATaGCCAGGGCTGAGGAGACAC | + |
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Preference number: 4 (lower is better) Translates to: VNGGPPLAFPGKSVSGGGLQGRP*PGLRRH Trigger: GTGTCTCCTCAGCCCTGGCCATGGTCTACCTTGGAG...ACCCCCACCACTGACAGACTTACCAGGGAATGCCAGTGGAGGTCCCCCATTCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS-3UTR CCA 90 bp | GTGAATGGGGGACCTCCACTGGCATTCCCTGGTAAGTCTGTCAGTGGTGGGGGTGTCAGCACAGAACCTTaGTTCTGTTCTACAGCACCG | + |
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Preference number: 4 (lower is better) Translates to: VNGGPPLAFPGKSVSGGGVSTEP*FCSTAP Trigger: CGGTGCTGTAGAACAGAACCAAGGTTCTGTGCTGAC...ACCCCCACCACTGACAGACTTACCAGGGAATGCCAGTGGAGGTCCCCCATTCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS-3UTR GCA 90 bp | GTGAATGGGGGACCTCCACTGGCATTCCCTGGTAAGTCTGTCAGTGGTGGGGGTTGCCACAGAACAAGATaGTACTGGTTTTGTGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: VNGGPPLAFPGKSVSGGGCHRTR*YWFCGA Trigger: GGCACCACAAAACCAGTAGCATCTTGTTCTGTGGCA...ACCCCCACCACTGACAGACTTACCAGGGAATGCCAGTGGAGGTCCCCCATTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS-3UTR TCA 90 bp | GAAAAGGAATGGGTGGTCAGCACAGAACCTTGGTTCTGTTCTACAGCACCGGGCCATCAGGAAGGAGAATaGCCATGCTCAGCTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: EKEWVVSTEPWFCSTAPGHQEGE*PCSALP Trigger: AGGAAGAGCTGAGCATGGTCATTCTCCTTCCTGATG...GCCCGGTGCTGTAGAACAGAACCAAGGTTCTGTGCTGACCACCCATTCCTTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123086.2 |
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| CDS-3UTR GCA 90 bp | GTGAATGGGGGACCTCCACTGGCATTCCCTGGTAAGTCTGTCAGTGGTGGGGGTTTCACCTCGTCCACATaGCCCATCTTAAATTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: VNGGPPLAFPGKSVSGGGFTSST*PILNLA Trigger: TGCTAAATTTAAGATGGGGCATGTGGACGAGGTGAA...ACCCCCACCACTGACAGACTTACCAGGGAATGCCAGTGGAGGTCCCCCATTCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS-3UTR GCA 90 bp | AGAAAAGGAATGGGTGGTCAGCACAGAACCTTGGTTCTGTTCTACAGCACCGGGTCACGGCGAGATCAGTaGTTTCATCAGGAAGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: RKGMGGQHRTLVLFYSTGSRRDQ*FHQEGE Trigger: TTCTCCTTCCTGATGAAAGCACTGATCTCGCCGTGA...CCCGGTGCTGTAGAACAGAACCAAGGTTCTGTGCTGACCACCCATTCCTTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123086.2 |
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| CDS-3UTR CCA 90 bp | GACAGAGAATTAGTCATCATCAGGGGTGTGCCCCAGAATTGGTTACCTCATACTTCCACAAAGCACTTGTaGGCAACCTTGGACACGGGC | + |
|
Preference number: 4 (lower is better) Translates to: DRELVIIRGVPQNWLPHTSTKHL*ATLDTG Trigger: GCCCGTGTCCAAGGTTGCCCACAAGTGCTTTGTGGA...AGTATGAGGTAACCAATTCTGGGGCACACCCCTGATGATGACTAATTCTCTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
||
| 3UTR CAA 72 bp | CAAAGTTCCCAGAGCCCCACTTTCTCAGCTCCTGGATaGGGTCATAACCAACCCTGTTTGGAAAGCACAGTT | + |
|
Preference number: 4 (lower is better) Translates to: QSSQSPTFSAPG*GHNQPCLESTV Trigger: AACTGTGCTTTCCAAACAGGGTTGGTTATGACCCAATCCAGGAGCTGAGAAAGTGGGGCTCTGGGAACTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
||
| CDS-3UTR GCA 90 bp | AGATGGAAATCAGATCAAAGTTCCCAGAGCCCCACTTTCTCAGCTCCTGGATTGCCACGGCGAGATCAGTaGTTTCATCAGGAAGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: RWKSDQSSQSPTFSAPGLPRRDQ*FHQEGE Trigger: TTCTCCTTCCTGATGAAAGCACTGATCTCGCCGTGG...CAATCCAGGAGCTGAGAAAGTGGGGCTCTGGGAACTTTGATCTGATTTCCATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | CGCATTGGGACAGTCAGCAACAATAGTCACCAACTACTAAGCATACTCTCTTTACTCCAAGGTAGACCATaGCCAGGGCTGAGGAGACAC | + |
|
Preference number: 4 (lower is better) Translates to: RIGTVSNNSHQLLSILSLLQGRP*PGLRRH Trigger: GTGTCTCCTCAGCCCTGGCCATGGTCTACCTTGGAG...TAAAGAGAGTATGCTTAGTAGTTGGTGACTATTGTTGCTGACTGTCCCAATGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | TTAGGGCTGTGCCCACGGTCTTGTGCTTGTTATGCAAATGCAAACACTTCACCATTCTGTCAGGGTTTCTaGGTTTGTCCAGGCTCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: LGLCPRSCACYANANTSPFCQGF*VCPGSK Trigger: CTTAGAGCCTGGACAAACCCAGAAACCCTGACAGAA...TGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCACAGCCCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | ATCATTTTGGATGATCTTGAATGTGTGACCTACCTAGCCTGCACCTCCCAAATGCATCAGGAAGGAGAATaGCCATGCTCAGCTCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: IILDDLECVTYLACTSQMHQEGE*PCSALP Trigger: AGGAAGAGCTGAGCATGGTCATTCTCCTTCCTGATG...CATTTGGGAGGTGCAGGCTAGGTAGGTCACACATTCAAGATCATCCAAAATGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | TTGGACACGGGCACATTCTTCTTAGTTGTCATGCCAGAGAAGTCAGCCCTTGTTGTCATTCCCAAATTCTaGAGTACAGTTTCCAGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: LDTGTFFLVVMPEKSALVVIPKF*STVSRS Trigger: CGACCTGGAAACTGTACTTCAGAATTTGGGAATGAC...AACAAGGGCTGACTTCTCTGGCATGACAACTAAGAAGAATGTGCCCGTGTCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123086.2 |
||
| CDS-3UTR TCA 90 bp | TTAGGGCTGTGCCCACGGTCTTGTGCTTGTTATGCAAATGCAAACACTTCACCACCTTCCACTTCCCTTTaGAATACATGGCATTCACAA | + |
|
Preference number: 4 (lower is better) Translates to: LGLCPRSCACYANANTSPPSTSL*NTWHSQ Trigger: TTGTGAATGCCATGTATTTCAAAGGGAAGTGGAAGG...TGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCACAGCCCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR GCA 90 bp | CGCATTGGGACAGTCAGCAACAATAGTCACCAACTACTAAGCATACTCTCTTTACCACGGCGAGATCAGTaGTTTCATCAGGAAGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: RIGTVSNNSHQLLSILSLPRRDQ*FHQEGE Trigger: TTCTCCTTCCTGATGAAAGCACTGATCTCGCCGTGG...TAAAGAGAGTATGCTTAGTAGTTGGTGACTATTGTTGCTGACTGTCCCAATGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR GCA 90 bp | AAAAACTCATGCAGGGACACTGAAGAGACACAGCAGACTGCATGTGTATGTCAATGCCACAGAACAAGATaGTACTGGTTTTGTGGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: KNSCRDTEETQQTACVCQCHRTR*YWFCGA Trigger: GGCACCACAAAACCAGTAGCATCTTGTTCTGTGGCA...TTGACATACACATGCAGTCTGCTGTGTCTCTTCAGTGTCCCTGCATGAGTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | CGCATTGGGACAGTCAGCAACAATAGTCACCAACTACTAAGCATACTCTCTTTAACTTGTGGGCAACCTTaGACACGGGCACATTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RIGTVSNNSHQLLSILSLTCGQP*TRAHSS Trigger: AGAAGAATGTGCCCGTGTCCAAGGTTGCCCACAAGT...TAAAGAGAGTATGCTTAGTAGTTGGTGACTATTGTTGCTGACTGTCCCAATGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| 3UTR CAA 72 bp | TCTCTCAGCTCCATCCTGAAGGTTCTCACTGAGTCCTaGAACTTGCACTTGAACTTTATGGAAAGAGTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: SLSSILKVLTES*NLHLNFMERVA Trigger: GGCAACTCTTTCCATAAAGTTCAAGTGCAAGTTCAAGGACTCAGTGAGAACCTTCAGGATGGAGCTGAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| 3UTR CAA 72 bp | CAGAGAATTAGTCATCATCAGGGGTGTGCCCCAGAATaGGTTACCTCATACTTAGTGGTCAGTCATAGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: QRISHHQGCAPE*VTSYLVVSHRN Trigger: GTTCCTATGACTGACCACTAAGTATGAGGTAACCAATTCTGGGGCACACCCCTGATGATGACTAATTCTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | AGTAGGTTCAATTACAGAAAACTTTGCCCCATCCTGAAATTCAATGCACAGCAACCGACACCCAGTCATTaGTGTGTTTCCTGCACCCTT | + |
|
Preference number: 4 (lower is better) Translates to: SRFNYRKLCPILKFNAQQPTPSH*CVSCTL Trigger: AAGGGTGCAGGAAACACATCAATGACTGGGTGTCGG...TTGCTGTGCATTGAATTTCAGGATGGGGCAAAGTTTTCTGTAATTGAACCTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | ATCATTTTGGATGATCTTGAATGTGTGACCTACCTAGCCTGCACCTCCCAAATGGTCATTCCCAAATTCTaGAGTACAGTTTCCAGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: IILDDLECVTYLACTSQMVIPKF*STVSRS Trigger: CGACCTGGAAACTGTACTTCAGAATTTGGGAATGAC...CATTTGGGAGGTGCAGGCTAGGTAGGTCACACATTCAAGATCATCCAAAATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR GCA 90 bp | GTGCCCACGGTCTTGTGCTTGTTATGCAAATGCAAACACTTCACCAATTCTAAGCTTCTCATATGTAAGTaGTTTTTCCACCACGGCGAG | + |
|
Preference number: 4 (lower is better) Translates to: VPTVLCLLCKCKHFTNSKLLICK*FFHHGE Trigger: CTCGCCGTGGTGGAAAAAGCACTTACATATGAGAAG...CTTAGAATTGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | GTGATGTTTCCATTAGAAAGAGTAGGAGGAGATAAGAAAAACACTTGGAGCTTTTCCACAAAGCACTTGTaGGCAACCTTGGACACGGGC | + |
|
Preference number: 4 (lower is better) Translates to: VMFPLERVGGDKKNTWSFSTKHL*ATLDTG Trigger: GCCCGTGTCCAAGGTTGCCCACAAGTGCTTTGTGGA...AAAGCTCCAAGTGTTTTTCTTATCTCCTCCTACTCTTTCTAATGGAAACATCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| 3UTR CAA 72 bp | TATAGGGTTCTTAGGGCTGTGCCCACGGTCTTGTGCTaGTTATGCAAATGCAAACACTTCACCAATTCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: YRVLRAVPTVLC*LCKCKHFTNSK Trigger: CTTAGAATTGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCACAGCCCTAAGAACCCTATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR GCA 90 bp | AAAAACTCATGCAGGGACACTGAAGAGACACAGCAGACTGCATGTGTATGTCAATTCACCTCGTCCACATaGCCCATCTTAAATTTAGCA | + |
|
Preference number: 4 (lower is better) Translates to: KNSCRDTEETQQTACVCQFTSST*PILNLA Trigger: TGCTAAATTTAAGATGGGGCATGTGGACGAGGTGAA...TTGACATACACATGCAGTCTGCTGTGTCTCTTCAGTGTCCCTGCATGAGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
||
| CDS-3UTR GCA 90 bp | TTAGGGCTGTGCCCACGGTCTTGTGCTTGTTATGCAAATGCAAACACTTCACCACTACTGGTTTTGTGGTaGCAGATAAAGAAAAGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: LGLCPRSCACYANANTSPLLVLW*QIKKRN Trigger: ATTCCTTTTCTTTATCTGGCACCACAAAACCAGTAG...TGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCACAGCCCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | CGCATTGGGACAGTCAGCAACAATAGTCACCAACTACTAAGCATACTCTCTTTAAGTACCTCAGACATCTaGGTAGCAGTGTTTCCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: RIGTVSNNSHQLLSILSLSTSDI*VAVFPL Trigger: CAAAGGAAACACTGCTACCCAGATGTCTGAGGTACT...TAAAGAGAGTATGCTTAGTAGTTGGTGACTATTGTTGCTGACTGTCCCAATGCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | CGCATTGGGACAGTCAGCAACAATAGTCACCAACTACTAAGCATACTCTCTTTAGAAGAACAGGTTTCGTaGCTTGTCTTTTTCACTCAG | + |
|
Preference number: 4 (lower is better) Translates to: RIGTVSNNSHQLLSILSLEEQVS*LVFFTQ Trigger: CTGAGTGAAAAAGACAAGTCACGAAACCTGTTCTTC...TAAAGAGAGTATGCTTAGTAGTTGGTGACTATTGTTGCTGACTGTCCCAATGCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | GTGATGTTTCCATTAGAAAGAGTAGGAGGAGATAAGAAAAACACTTGGAGCTTTAACCAGCTTAGTCAGTaGGCAGACTGTTCCAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: VMFPLERVGGDKKNTWSFNQLSQ*ADCSRT Trigger: AGTCCTGGAACAGTCTGCCCACTGACTAAGCTGGTT...AAAGCTCCAAGTGTTTTTCTTATCTCCTCCTACTCTTTCTAATGGAAACATCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | AGTAGGTTCAATTACAGAAAACTTTGCCCCATCCTGAAATTCAATGCACAGCAATTCTGTCAGGGTTTCTaGGTTTGTCCAGGCTCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: SRFNYRKLCPILKFNAQQFCQGF*VCPGSK Trigger: CTTAGAGCCTGGACAAACCCAGAAACCCTGACAGAA...TTGCTGTGCATTGAATTTCAGGATGGGGCAAAGTTTTCTGTAATTGAACCTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | ATCATTTTGGATGATCTTGAATGTGTGACCTACCTAGCCTGCACCTCCCAAATGCCTCCAGCTTTAATCTaGGTAAAAAGACTTGCACTT | + |
|
Preference number: 4 (lower is better) Translates to: IILDDLECVTYLACTSQMPPALI*VKRLAL Trigger: AAGTGCAAGTCTTTTTACCCAGATTAAAGCTGGAGG...CATTTGGGAGGTGCAGGCTAGGTAGGTCACACATTCAAGATCATCCAAAATGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | GTGCCCACGGTCTTGTGCTTGTTATGCAAATGCAAACACTTCACCAATTCTAAGCCTCCAGCTTTAATCTaGGTAAAAAGACTTGCACTT | + |
|
Preference number: 4 (lower is better) Translates to: VPTVLCLLCKCKHFTNSKPPALI*VKRLAL Trigger: AAGTGCAAGTCTTTTTACCCAGATTAAAGCTGGAGG...CTTAGAATTGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | GTGATGTTTCCATTAGAAAGAGTAGGAGGAGATAAGAAAAACACTTGGAGCTTTACTTGTGGGCAACCTTaGACACGGGCACATTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: VMFPLERVGGDKKNTWSFTCGQP*TRAHSS Trigger: AGAAGAATGTGCCCGTGTCCAAGGTTGCCCACAAGT...AAAGCTCCAAGTGTTTTTCTTATCTCCTCCTACTCTTTCTAATGGAAACATCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | GTGCCCACGGTCTTGTGCTTGTTATGCAAATGCAAACACTTCACCAATTCTAAGGTATTTTTAATAGACTaGTGGCAAAAGACCCATTGG | + |
|
Preference number: 4 (lower is better) Translates to: VPTVLCLLCKCKHFTNSKVFLID*WQKTHW Trigger: CCAATGGGTCTTTTGCCATCAGTCTATTAAAAATAC...CTTAGAATTGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | TCAGTGAACAACAGGAACAATACAGAAATGGACACAGTATTCCACAACATTAATCATCAGGAAGGAGAATaGCCATGCTCAGCTCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SVNNRNNTEMDTVFHNINHQEGE*PCSALP Trigger: AGGAAGAGCTGAGCATGGTCATTCTCCTTCCTGATG...ATTAATGTTGTGGAATACTGTGTCCATTTCTGTATTGTTCCTGTTGTTCACTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | AGTAGGTTCAATTACAGAAAACTTTGCCCCATCCTGAAATTCAATGCACAGCAAGTCATTCCCAAATTCTaGAGTACAGTTTCCAGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: SRFNYRKLCPILKFNAQQVIPKF*STVSRS Trigger: CGACCTGGAAACTGTACTTCAGAATTTGGGAATGAC...TTGCTGTGCATTGAATTTCAGGATGGGGCAAAGTTTTCTGTAATTGAACCTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR GCA 90 bp | GTGCCCACGGTCTTGTGCTTGTTATGCAAATGCAAACACTTCACCAATTCTAAGCTACTGGTTTTGTGGTaGCAGATAAAGAAAAGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: VPTVLCLLCKCKHFTNSKLLVLW*QIKKRN Trigger: ATTCCTTTTCTTTATCTGGCACCACAAAACCAGTAG...CTTAGAATTGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | TCAGTGAACAACAGGAACAATACAGAAATGGACACAGTATTCCACAACATTAATGTCAGCACAGAACCTTaGTTCTGTTCTACAGCACCG | + |
|
Preference number: 4 (lower is better) Translates to: SVNNRNNTEMDTVFHNINVSTEP*FCSTAP Trigger: CGGTGCTGTAGAACAGAACCAAGGTTCTGTGCTGAC...ATTAATGTTGTGGAATACTGTGTCCATTTCTGTATTGTTCCTGTTGTTCACTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | CGCATTGGGACAGTCAGCAACAATAGTCACCAACTACTAAGCATACTCTCTTTAGTATTTTTAATAGACTaGTGGCAAAAGACCCATTGG | + |
|
Preference number: 4 (lower is better) Translates to: RIGTVSNNSHQLLSILSLVFLID*WQKTHW Trigger: CCAATGGGTCTTTTGCCATCAGTCTATTAAAAATAC...TAAAGAGAGTATGCTTAGTAGTTGGTGACTATTGTTGCTGACTGTCCCAATGCG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | AGTAGGTTCAATTACAGAAAACTTTGCCCCATCCTGAAATTCAATGCACAGCAACCTTCCACTTCCCTTTaGAATACATGGCATTCACAA | + |
|
Preference number: 4 (lower is better) Translates to: SRFNYRKLCPILKFNAQQPSTSL*NTWHSQ Trigger: TTGTGAATGCCATGTATTTCAAAGGGAAGTGGAAGG...TTGCTGTGCATTGAATTTCAGGATGGGGCAAAGTTTTCTGTAATTGAACCTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | GTGATGTTTCCATTAGAAAGAGTAGGAGGAGATAAGAAAAACACTTGGAGCTTTAGTACCTCAGACATCTaGGTAGCAGTGTTTCCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: VMFPLERVGGDKKNTWSFSTSDI*VAVFPL Trigger: CAAAGGAAACACTGCTACCCAGATGTCTGAGGTACT...AAAGCTCCAAGTGTTTTTCTTATCTCCTCCTACTCTTTCTAATGGAAACATCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | GTGATGTTTCCATTAGAAAGAGTAGGAGGAGATAAGAAAAACACTTGGAGCTTTGAAGAACAGGTTTCGTaGCTTGTCTTTTTCACTCAG | + |
|
Preference number: 4 (lower is better) Translates to: VMFPLERVGGDKKNTWSFEEQVS*LVFFTQ Trigger: CTGAGTGAAAAAGACAAGTCACGAAACCTGTTCTTC...AAAGCTCCAAGTGTTTTTCTTATCTCCTCCTACTCTTTCTAATGGAAACATCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | AGTAGGTTCAATTACAGAAAACTTTGCCCCATCCTGAAATTCAATGCACAGCAAAAAAAGACTTGCACTTaGCTTTCTGTCAGGGTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SRFNYRKLCPILKFNAQQKKTCT*LSVRVS Trigger: AGAAACCCTGACAGAAAGTCAAGTGCAAGTCTTTTT...TTGCTGTGCATTGAATTTCAGGATGGGGCAAAGTTTTCTGTAATTGAACCTACT 39% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | GTGATGTTTCCATTAGAAAGAGTAGGAGGAGATAAGAAAAACACTTGGAGCTTTATGCTACTGGTTTTGTaGTGCCAGATAAAGAAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: VMFPLERVGGDKKNTWSFMLLVL*CQIKKR Trigger: CCTTTTCTTTATCTGGCACCACAAAACCAGTAGCAT...AAAGCTCCAAGTGTTTTTCTTATCTCCTCCTACTCTTTCTAATGGAAACATCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR TCA 90 bp | TCAGTGAACAACAGGAACAATACAGAAATGGACACAGTATTCCACAACATTAATAAAAAGACTTGCACTTaGCTTTCTGTCAGGGTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SVNNRNNTEMDTVFHNINKKTCT*LSVRVS Trigger: AGAAACCCTGACAGAAAGTCAAGTGCAAGTCTTTTT...ATTAATGTTGTGGAATACTGTGTCCATTTCTGTATTGTTCCTGTTGTTCACTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
||
| CDS-3UTR CCA 90 bp | TCAGTGAACAACAGGAACAATACAGAAATGGACACAGTATTCCACAACATTAATATGCTACTGGTTTTGTaGTGCCAGATAAAGAAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: SVNNRNNTEMDTVFHNINMLLVL*CQIKKR Trigger: CCTTTTCTTTATCTGGCACCACAAAACCAGTAGCAT...ATTAATGTTGTGGAATACTGTGTCCATTTCTGTATTGTTCCTGTTGTTCACTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112706.4 |
||
| CDS-3UTR CAA 90 bp | GTGAATGGGGGACCTCCACTGGCATTCCCTGGTAAGTCTGTCAGTGGTGGGGGTCACTTGTGGGCAACCTaGGACACGGGCACATTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: VNGGPPLAFPGKSVSGGGHLWAT*DTGTFF Trigger: GAAGAATGTGCCCGTGTCCAAGGTTGCCCACAAGTG...ACCCCCACCACTGACAGACTTACCAGGGAATGCCAGTGGAGGTCCCCCATTCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CAA 90 bp | TTAGGGCTGTGCCCACGGTCTTGTGCTTGTTATGCAAATGCAAACACTTCACCACAGAGAAGTCAGCCCTaGTTTCCTCAAAGGCATCTG | + |
|
Preference number: 5 (lower is better) Translates to: LGLCPRSCACYANANTSPQRSQP*FPQRHL Trigger: CAGATGCCTTTGAGGAAACAAGGGCTGACTTCTCTG...TGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCACAGCCCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS-3UTR CAA 90 bp | GTGCCCACGGTCTTGTGCTTGTTATGCAAATGCAAACACTTCACCAATTCTAAGCACTTGTGGGCAACCTaGGACACGGGCACATTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: VPTVLCLLCKCKHFTNSKHLWAT*DTGTFF Trigger: GAAGAATGTGCCCGTGTCCAAGGTTGCCCACAAGTG...CTTAGAATTGGTGAAGTGTTTGCATTTGCATAACAAGCACAAGACCGTGGGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
||
| CDS TCA 90 bp | ACAGCTCTTCTAGTCCAGCCTGATAGAATTTGTGGCAGGATTCCTTaGAGGTCGAAAGGAAATCACACGATTCTTCTCCAAAGAGTCGGC | + |
|
Preference number: 5 (lower is better) Translates to: TALLVQPDRICGRIP*RSKGNHTILLQRVG Trigger: GCCGACTCTTTGGAGAAGAATCGTGTGATTTCCTTTCGACCTTCAAGGAATCCTGCCACAAATTCTATCAGGCTGGACTAGAAGAGCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS CCA 90 bp | TCTGAAGTACAGTTTCCAGGTCGTAACTCTCCTCCAGCTTTAATCTaGGTAAAAAGACTTGCACTTGACTTTCTGTCAGGGTTTCTGGGT | + |
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Preference number: 5 (lower is better) Translates to: SEVQFPGRNSPPALI*VKRLALDFLSGFLG Trigger: ACCCAGAAACCCTGACAGAAAGTCAAGTGCAAGTCTTTTTACCCAGATTAAAGCTGGAGGAGAGTTACGACCTGGAAACTGTACTTCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS-3UTR CAA 90 bp | ATCATTTTGGATGATCTTGAATGTGTGACCTACCTAGCCTGCACCTCCCAAATGTTGTGGCAGGATTCCTaGAAGGTCGAAAGGAAATCA | + |
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Preference number: 5 (lower is better) Translates to: IILDDLECVTYLACTSQMLWQDS*KVERKS Trigger: TGATTTCCTTTCGACCTTCAAGGAATCCTGCCACAA...CATTTGGGAGGTGCAGGCTAGGTAGGTCACACATTCAAGATCATCCAAAATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS-3UTR CAA 90 bp | ATCATTTTGGATGATCTTGAATGTGTGACCTACCTAGCCTGCACCTCCCAAATGAAGTGTCTGGAAACTTaGATGAACATCTCCATTTCC | + |
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Preference number: 5 (lower is better) Translates to: IILDDLECVTYLACTSQMKCLET*MNISIS Trigger: GGAAATGGAGATGTTCATCAAAGTTTCCAGACACTT...CATTTGGGAGGTGCAGGCTAGGTAGGTCACACATTCAAGATCATCCAAAATGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS-3UTR CAA 90 bp | AGTAGGTTCAATTACAGAAAACTTTGCCCCATCCTGAAATTCAATGCACAGCAATTGTGGCAGGATTCCTaGAAGGTCGAAAGGAAATCA | + |
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Preference number: 5 (lower is better) Translates to: SRFNYRKLCPILKFNAQQLWQDS*KVERKS Trigger: TGATTTCCTTTCGACCTTCAAGGAATCCTGCCACAA...TTGCTGTGCATTGAATTTCAGGATGGGGCAAAGTTTTCTGTAATTGAACCTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS-3UTR CAA 90 bp | AGTAGGTTCAATTACAGAAAACTTTGCCCCATCCTGAAATTCAATGCACAGCAAAAGTGTCTGGAAACTTaGATGAACATCTCCATTTCC | + |
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Preference number: 5 (lower is better) Translates to: SRFNYRKLCPILKFNAQQKCLET*MNISIS Trigger: GGAAATGGAGATGTTCATCAAAGTTTCCAGACACTT...TTGCTGTGCATTGAATTTCAGGATGGGGCAAAGTTTTCTGTAATTGAACCTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS GCA 72 bp | GGCAGAGCCAGAACCTGCATGTTCACCTCGTCCACATaGCCCATCTTAAATTTAGCATGCTTGAACATCATC | + |
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Preference number: 6 (lower is better) Translates to: GRARTCMFTSST*PILNLACLNII Trigger: GATGATGTTCAAGCATGCTAAATTTAAGATGGGGCATGTGGACGAGGTGAACATGCAGGTTCTGGCTCTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS TCA 72 bp | TTAAAGGGCATGCCTCTCGTGTACTTTCGGTCAAACTaGGCCTTCCACTTCCCTTTGAAATACATGGCATTC | + |
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Preference number: 6 (lower is better) Translates to: LKGMPLVYFRSN*AFHFPLKYMAF Trigger: GAATGCCATGTATTTCAAAGGGAAGTGGAAGGCTCAGTTTGACCGAAAGTACACGAGAGGCATGCCCTTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS TCA 72 bp | TCCTCCAGCTTTAATCTGGGTAAAAAGACTTGCACTTaGCTTTCTGTCAGGGTTTCTGGGTTTGTCCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: SSSFNLGKKTCT*LSVRVSGFVQA Trigger: AGCCTGGACAAACCCAGAAACCCTGACAGAAAGTCAAGTGCAAGTCTTTTTACCCAGATTAAAGCTGGAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS CCA 72 bp | CAGTTTCCAGGTCGTAACTCTCCTCCAGCTTTAATCTaGGTAAAAAGACTTGCACTTGACTTTCTGTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: QFPGRNSPPALI*VKRLALDFLSG Trigger: CCCTGACAGAAAGTCAAGTGCAAGTCTTTTTACCCAGATTAAAGCTGGAGGAGAGTTACGACCTGGAAACTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS CAA 90 bp | CTGAGTGTCAGTTTTGTTAATTTCAGCGAGAAGTGTCTGGAAACTTaGATGAACATCTCCATTTCCACTCAAACCAAGTACCTCAGACAT | + |
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Preference number: 6 (lower is better) Translates to: LSVSFVNFSEKCLET*MNISISTQTKYLRH Trigger: ATGTCTGAGGTACTTGGTTTGAGTGGAAATGGAGATGTTCATCAAAGTTTCCAGACACTTCTCGCTGAAATTAACAAAACTGACACTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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| CDS CAA 72 bp | AGTTTTGTTAATTTCAGCGAGAAGTGTCTGGAAACTTaGATGAACATCTCCATTTCCACTCAAACCAAGTAC | + |
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Preference number: 6 (lower is better) Translates to: SFVNFSEKCLET*MNISISTQTKY Trigger: GTACTTGGTTTGAGTGGAAATGGAGATGTTCATCAAAGTTTCCAGACACTTCTCGCTGAAATTAACAAAACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000514.11 ENSMUST00000112706.4 |
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