Pregenerated sensors for SERPINB6D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047889Ensembl transcript IDs: ENSMUST00000059637.8, ENSMUST00000221681.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TTCATAACTGTCATTGCACATATGGATAAGATAAAGTaGGTCACAGGCAAACCATGTAGAGCGGTAAAATAC | + |
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Preference number: 3 (lower is better) Translates to: FITVIAHMDKIK*VTGKPCRAVKY Trigger: GTATTTTACCGCTCTACATGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CCA 90 bp | ATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCATGTCTCCCAATAAGGTCATaGCCAGGGATGAAGCAATGC | + |
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Preference number: 4 (lower is better) Translates to: ITVIAHMDKIKWVTGKPCLPIRS*PGMKQC Trigger: GCATTGCTTCATCCCTGGCCATGACCTTATTGGGAG...ACATGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR GCA 90 bp | ATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCATGTCTGCCTTATCTGCCTTaGAGTGTTTTCCTTTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: ITVIAHMDKIKWVTGKPCLPYLP*SVFLCS Trigger: GGAGCAAAGGAAAACACTGCAAGGCAGATAAGGCAG...ACATGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR GCA 90 bp | TTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCAGGTGTCGTCATCCAGTaGTTTCAAAAGTTTGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: FITVIAHMDKIKWVTGKPGVVIQ*FQKFEG Trigger: GCCTTCAAACTTTTGAAAGCACTGGATGACGACACC...TGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR GCA 90 bp | ATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCATGTCCAGGGATGAAGCAATaGTCGGGGGTGATAAAAATA | + |
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Preference number: 4 (lower is better) Translates to: ITVIAHMDKIKWVTGKPCPGMKQ*SGVIKI Trigger: TATTTTTATCACCCCCGAGCATTGCTTCATCCCTGG...ACATGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR GCA 90 bp | GCCGTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAAATATCTGTGGCAGCTaGAACCTTTGTGCCCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: AVYFITVIAHMDKIKWVTNICGS*NLCALL Trigger: GAGAAGGGCACAAAGGTTGCAGCTGCCACAGATATT...TGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAACGGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR GCA 90 bp | ATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCATGTAGTGTCTGCCTTATCTaGCTTGCAGTGTTTTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: ITVIAHMDKIKWVTGKPCSVCLI*LAVFSF Trigger: AAAGGAAAACACTGCAAGGCAGATAAGGCAGACACT...ACATGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR GCA 90 bp | GAAGCCGTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCTCCAAAGAAAGTGTCTaGCTTATCTGCCTTGCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: EAVYFITVIAHMDKIKWVSKESV*LICLAV Trigger: CACTGCAAGGCAGATAAGGCAGACACTTTCTTTGGA...GACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAACGGCTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CCA 90 bp | TTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCAGTGGATATCTTCACATaGATCACTGCTGCATTTATC | + |
|
Preference number: 4 (lower is better) Translates to: FITVIAHMDKIKWVTGKPVDIFT*ITAAFI Trigger: GATAAATGCAGCAGTGATCCATGTGAAGATATCCAC...TGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR GCA 90 bp | GCCGTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACACAAAGGCATCAGTCATaGCCATCTTGTAAAGAACAT | + |
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Preference number: 4 (lower is better) Translates to: AVYFITVIAHMDKIKWVTQRHQS*PSCKEH Trigger: ATGTTCTTTACAAGATGGGCATGACTGATGCCTTTG...TGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAACGGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CCA 90 bp | GTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAATGGAAGTCCTGGTaGATATCTTCACATGGATCA | + |
|
Preference number: 4 (lower is better) Translates to: VYFITVIAHMDKIKWVTGKWKSW*ISSHGS Trigger: TGATCCATGTGAAGATATCCACCAGGACTTCCATTT...GCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CCA 90 bp | TTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCAGAAACAAGCCTTGCTTaGAAGATATTCCAGAAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: FITVIAHMDKIKWVTGKPETSLA*KIFQKS Trigger: ACTTTTCTGGAATATCTTCCAAGCAAGGCTTGTTTC...TGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR TCA 90 bp | GCCGTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACATCTTGTTCACTTCATTaGGAAGTAAATGGAAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: AVYFITVIAHMDKIKWVTSCSLH*EVNGSP Trigger: AGGACTTCCATTTACTTCTCAATGAAGTGAACAAGA...TGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAACGGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR GCA 90 bp | GTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCCAGTTCTTCTATCTCTaGTTTGTAGAACTTTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: VYFITVIAHMDKIKWVTGQFFYL*FVELLA Trigger: AGCCAAAAGTTCTACAAAGCAGAGATAGAAGAACTG...GCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CCA 90 bp | GAAGCCGTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCTCATTGAGAAGTAAATaGAAGTCCTGGTGGATATCT | + |
|
Preference number: 4 (lower is better) Translates to: EAVYFITVIAHMDKIKWVSLRSK*KSWWIS Trigger: AGATATCCACCAGGACTTCCATTTACTTCTCAATGA...GACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAACGGCTTC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CCA 90 bp | ATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCATGTGAAGCAACAGAATCTTaGTGGATATCTCTTCTATAT | + |
|
Preference number: 4 (lower is better) Translates to: ITVIAHMDKIKWVTGKPCEATES*WISLLY Trigger: ATATAGAAGAGATATCCACCAAGATTCTGTTGCTTC...ACATGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CCA 90 bp | GAAGCCGTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCAAATCTTCGGTCATATaGGTAAAAATAAAGGGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: EAVYFITVIAHMDKIKWVKSSVI*VKIKGW Trigger: CCACCCCTTTATTTTTACCCATATGACCGAAGATTT...GACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAACGGCTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS TCA 90 bp | GGTAAAAATAAAGGGGTGGTCAGCACAGAAAGTGTGGGTAGTTGGTaGTGCACCCATCATCACAATATCTGTGGCAGCTGCAACCTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: GKNKGVVSTESVGSW*CTHHHNICGSCNLC Trigger: ACAAAGGTTGCAGCTGCCACAGATATTGTGATGATGGGTGCATCACCAACTACCCACACTTTCTGTGCTGACCACCCCTTTATTTTTACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS GCA 90 bp | CATGGATCACTGCTGCATTTATCCAAAGAAAGTGTCTGCCTTATCTaGCTTGCAGTGTTTTCCTTTGCTCCCAATAAGGTCATGGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: HGSLLHLSKESVCLI*LAVFSFAPNKVMAR Trigger: CCTGGCCATGACCTTATTGGGAGCAAAGGAAAACACTGCAAGGCAGATAAGGCAGACACTTTCTTTGGATAAATGCAGCAGTGATCCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CCA 90 bp | TCGGTCATATGGGTAAAAATAAAGGGGTGGTCAGCACAGAAAGTGTaGGTAGTTGGTGATGCACCCATCATCACAATATCTGTGGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: SVIWVKIKGWSAQKV*VVGDAPIITISVAA Trigger: AGCTGCCACAGATATTGTGATGATGGGTGCATCACCAACTACCCACACTTTCTGTGCTGACCACCCCTTTATTTTTACCCATATGACCGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS GCA 90 bp | ATATCTTCACATGGATCACTGCTGCATTTATCCAAAGAAAGTGTCTaGCTTATCTGCCTTGCAGTGTTTTCCTTTGCTCCCAATAAGGTC | + |
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Preference number: 5 (lower is better) Translates to: ISSHGSLLHLSKESV*LICLAVFSFAPNKV Trigger: GACCTTATTGGGAGCAAAGGAAAACACTGCAAGGCAGATAAGGCAGACACTTTCTTTGGATAAATGCAGCAGTGATCCATGTGAAGATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CCA 90 bp | GTAAAGAACATTGTTCATGTCATAGATCTCCTCCAGCTTAAAACGTaGGAGGAAAACCTCCACCTCTTCTTCATTCATCTTGTCCAGACT | + |
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Preference number: 5 (lower is better) Translates to: VKNIVHVIDLLQLKT*EENLHLFFIHLVQT Trigger: AGTCTGGACAAGATGAATGAAGAAGAGGTGGAGGTTTTCCTCCCACGTTTTAAGCTGGAGGAGATCTATGACATGAACAATGTTCTTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS-3UTR CAA 90 bp | ATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCATGTTCTGCCTTATCTGCCTaGCAGTGTTTTCCTTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: ITVIAHMDKIKWVTGKPCSALSA*QCFPLL Trigger: GAGCAAAGGAAAACACTGCAAGGCAGATAAGGCAGA...ACATGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CAA 90 bp | TTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCATTGCAGTGTTTTCCTTaGCTCCCAATAAGGTCATGG | + |
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Preference number: 5 (lower is better) Translates to: FITVIAHMDKIKWVTGKPLQCFP*LPIRSW Trigger: CCATGACCTTATTGGGAGCAAAGGAAAACACTGCAA...TGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CAA 90 bp | TTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCAGGTTTCACCACATTCTaGCTGACTCTGAAAGGCATT | + |
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Preference number: 5 (lower is better) Translates to: FITVIAHMDKIKWVTGKPGFTTF*LTLKGI Trigger: AATGCCTTTCAGAGTCAGCAAGAATGTGGTGAAACC...TGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CAA 90 bp | TTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCAGCCTTATATATGACCTaGGACAGAAACAAGCCTTGC | + |
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Preference number: 5 (lower is better) Translates to: FITVIAHMDKIKWVTGKPALYMT*DRNKPC Trigger: GCAAGGCTTGTTTCTGTCCAAGGTCATATATAAGGC...TGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CAA 90 bp | TTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCATTTTCGTCTGTGTTTTaGGTTACCCAGGTGTTGATG | + |
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Preference number: 5 (lower is better) Translates to: FITVIAHMDKIKWVTGKPFSSVF*VTQVLM Trigger: CATCAACACCTGGGTAACCAAAAACACAGACGAAAA...TGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CAA 90 bp | GAAGCCGTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCGGACAGAAACAAGCCTaGCTTGGAAGATATTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: EAVYFITVIAHMDKIKWVGQKQA*LGRYSR Trigger: TCTGGAATATCTTCCAAGCAAGGCTTGTTTCTGTCC...GACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAACGGCTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CAA 90 bp | GTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAGCCTGTTTTCTGTTTaGAGTATGATCCCAGGATCA | + |
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Preference number: 5 (lower is better) Translates to: VYFITVIAHMDKIKWVTGSLFSV*SMIPGS Trigger: TGATCCTGGGATCATACTCAAAACAGAAAACAGGCT...GCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CAA 90 bp | TTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCAAACCATCATCTTGTCCAGACTaGTCCACTCTACAAATTTCT | + |
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Preference number: 5 (lower is better) Translates to: FITVIAHMDKIKWVTGKPSSCPD*STLQIS Trigger: AGAAATTTGTAGAGTGGACAAGTCTGGACAAGATGA...TGGTTTGCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CAA 90 bp | GTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCGTCTTGTTCACTTCATaGAGAAGTAAATGGAAGTCC | + |
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Preference number: 5 (lower is better) Translates to: VYFITVIAHMDKIKWVTGVLFTS*RSKWKS Trigger: GGACTTCCATTTACTTCTCAATGAAGTGAACAAGAC...GCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CAA 90 bp | GAAGCCGTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCAGAAACAAGCCTTGCTaGGAAGATATTCCAGAAAAG | + |
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Preference number: 5 (lower is better) Translates to: EAVYFITVIAHMDKIKWVRNKPC*EDIPEK Trigger: CTTTTCTGGAATATCTTCCAAGCAAGGCTTGTTTCT...GACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAACGGCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS-3UTR CAA 90 bp | GTTTATTTCATAACTGTCATTGCACATATGGATAAGATAAAGTGGGTCACAGGCCTTTTGAAACATCATTaGCACAGGTTTCACCACATT | + |
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Preference number: 5 (lower is better) Translates to: VYFITVIAHMDKIKWVTGLLKHH*HRFHHI Trigger: AATGTGGTGAAACCTGTGCAAATGATGTTTCAAAAG...GCCTGTGACCCACTTTATCTTATCCATATGTGCAATGACAGTTATGAAATAAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059637.8 |
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| CDS TCA 72 bp | AAAGGGGTGGTCAGCACAGAAAGTGTGGGTAGTTGGTaGTGCACCCATCATCACAATATCTGTGGCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: KGVVSTESVGSW*CTHHHNICGSC Trigger: GCAGCTGCCACAGATATTGTGATGATGGGTGCATCACCAACTACCCACACTTTCTGTGCTGACCACCCCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CAA 90 bp | TATCCAAAGAAAGTGTCTGCCTTATCTGCCTTGCAGTGTTTTCCTTaGCTCCCAATAAGGTCATGGCCAGGGATGAAGCAATGCTCGGGG | + |
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Preference number: 6 (lower is better) Translates to: YPKKVSALSALQCFP*LPIRSWPGMKQCSG Trigger: CCCCGAGCATTGCTTCATCCCTGGCCATGACCTTATTGGGAGCAAAGGAAAACACTGCAAGGCAGATAAGGCAGACACTTTCTTTGGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CAA 72 bp | AAAGTGTCTGCCTTATCTGCCTTGCAGTGTTTTCCTTaGCTCCCAATAAGGTCATGGCCAGGGATGAAGCAA | + |
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Preference number: 6 (lower is better) Translates to: KVSALSALQCFP*LPIRSWPGMKQ Trigger: TTGCTTCATCCCTGGCCATGACCTTATTGGGAGCAAAGGAAAACACTGCAAGGCAGATAAGGCAGACACTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS GCA 72 bp | CATGGATCACTGCTGCATTTATCCAAAGAAAGTGTCTaGCTTATCTGCCTTGCAGTGTTTTCCTTTGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: HGSLLHLSKESV*LICLAVFSFAP Trigger: GGGAGCAAAGGAAAACACTGCAAGGCAGATAAGGCAGACACTTTCTTTGGATAAATGCAGCAGTGATCCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS GCA 72 bp | GGAAGTCCTGGTGGATATCTTCACATGGATCACTGCTaGATTTATCCAAAGAAAGTGTCTGCCTTATCTGCC | + |
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Preference number: 6 (lower is better) Translates to: GSPGGYLHMDHC*IYPKKVSALSA Trigger: GGCAGATAAGGCAGACACTTTCTTTGGATAAATGCAGCAGTGATCCATGTGAAGATATCCACCAGGACTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS GCA 72 bp | TTTTCGTCTGTGTTTTTGGTTACCCAGGTGTTGATGTaGTGTCGGGATTGCTCTGTATCACCCTTAAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: FSSVFLVTQVLM*CRDCSVSPLKS Trigger: GGACTTTAAGGGTGATACAGAGCAATCCCGACAGCACATCAACACCTGGGTAACCAAAAACACAGACGAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS GCA 72 bp | CTGCTGCATTTATCCAAAGAAAGTGTCTGCCTTATCTaGCTTGCAGTGTTTTCCTTTGCTCCCAATAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: LLHLSKESVCLI*LAVFSFAPNKV Trigger: GACCTTATTGGGAGCAAAGGAAAACACTGCAAGGCAGATAAGGCAGACACTTTCTTTGGATAAATGCAGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS GCA 72 bp | TTTTTGGTTACCCAGGTGTTGATGTGCTGTCGGGATTaGTCTGTATCACCCTTAAAGTCCAGTTCTTCTATC | + |
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Preference number: 6 (lower is better) Translates to: FLVTQVLMCCRD*SVSPLKSSSSI Trigger: GATAGAAGAACTGGACTTTAAGGGTGATACAGAGCAATCCCGACAGCACATCAACACCTGGGTAACCAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CAA 72 bp | GTTTTTGGTTACCCAGGTGTTGATGTGCTGTCGGGATaGCTCTGTATCACCCTTAAAGTCCAGTTCTTCTAT | + |
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Preference number: 6 (lower is better) Translates to: VFGYPGVDVLSG*LCITLKVQFFY Trigger: ATAGAAGAACTGGACTTTAAGGGTGATACAGAGCAATCCCGACAGCACATCAACACCTGGGTAACCAAAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CAA 72 bp | TGCATTTATCCAAAGAAAGTGTCTGCCTTATCTGCCTaGCAGTGTTTTCCTTTGCTCCCAATAAGGTCATGG | + |
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Preference number: 6 (lower is better) Translates to: CIYPKKVSALSA*QCFPLLPIRSW Trigger: CCATGACCTTATTGGGAGCAAAGGAAAACACTGCAAGGCAGATAAGGCAGACACTTTCTTTGGATAAATGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS GCA 72 bp | AATGGAAGTCCTGGTGGATATCTTCACATGGATCACTaGTGCATTTATCCAAAGAAAGTGTCTGCCTTATCT | + |
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Preference number: 6 (lower is better) Translates to: NGSPGGYLHMDH*CIYPKKVSALS Trigger: AGATAAGGCAGACACTTTCTTTGGATAAATGCAGCAGTGATCCATGTGAAGATATCCACCAGGACTTCCATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CCA 72 bp | ATTGTTCATGTCATAGATCTCCTCCAGCTTAAAACGTaGGAGGAAAACCTCCACCTCTTCTTCATTCATCTT | + |
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Preference number: 6 (lower is better) Translates to: IVHVIDLLQLKT*EENLHLFFIHL Trigger: AAGATGAATGAAGAAGAGGTGGAGGTTTTCCTCCCACGTTTTAAGCTGGAGGAGATCTATGACATGAACAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CAA 72 bp | TGGAATGTCTTTTCCACGAAGAGCCTGTTTTCTGTTTaGAGTATGATCCCAGGATCAGTCTTGTTCACTTCA | + |
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Preference number: 6 (lower is better) Translates to: WNVFSTKSLFSV*SMIPGSVLFTS Trigger: TGAAGTGAACAAGACTGATCCTGGGATCATACTCAAAACAGAAAACAGGCTCTTCGTGGAAAAGACATTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CAA 72 bp | CTGTTTTCTGTTTTGAGTATGATCCCAGGATCAGTCTaGTTCACTTCATTGAGAAGTAAATGGAAGTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: LFSVLSMIPGSV*FTSLRSKWKSW Trigger: CCAGGACTTCCATTTACTTCTCAATGAAGTGAACAAGACTGATCCTGGGATCATACTCAAAACAGAAAACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CAA 90 bp | TTTGTGCCCTTCTCAATCACTTCTATAAAGGCCTTATATATGACCTaGGACAGAAACAAGCCTTGCTTGGAAGATATTCCAGAAAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: FVPFSITSIKALYMT*DRNKPCLEDIPEKS Trigger: AGACTTTTCTGGAATATCTTCCAAGCAAGGCTTGTTTCTGTCCAAGGTCATATATAAGGCCTTTATAGAAGTGATTGAGAAGGGCACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CCA 72 bp | TTTCTTTTCCAACATTCTAAGTTCAACATGTTCATCTaGAAGCATGATGATCATGTTCAGCTTATTCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: FLFQHSKFNMFI*KHDDHVQLIPS Trigger: GCTGGGAATAAGCTGAACATGATCATCATGCTTCCAGATGAACATGTTGAACTTAGAATGTTGGAAAAGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CAA 72 bp | AAACCTCCACCTCTTCTTCATTCATCTTGTCCAGACTaGTCCACTCTACAAATTTCTCATAAGTCATTTTCT | + |
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Preference number: 6 (lower is better) Translates to: KPPPLLHSSCPD*STLQISHKSFS Trigger: AGAAAATGACTTATGAGAAATTTGTAGAGTGGACAAGTCTGGACAAGATGAATGAAGAAGAGGTGGAGGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CAA 72 bp | TTCTCAATCACTTCTATAAAGGCCTTATATATGACCTaGGACAGAAACAAGCCTTGCTTGGAAGATATTCCA | + |
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Preference number: 6 (lower is better) Translates to: FSITSIKALYMT*DRNKPCLEDIP Trigger: TGGAATATCTTCCAAGCAAGGCTTGTTTCTGTCCAAGGTCATATATAAGGCCTTTATAGAAGTGATTGAGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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| CDS CAA 90 bp | CTCTTCTATATAGGTTATCTTAAAGGTAGACTTTTGAAACATCATTaGCACAGGTTTCACCACATTCTTGCTGACTCTGAAAGGCATTTC | + |
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Preference number: 6 (lower is better) Translates to: LFYIGYLKGRLLKHH*HRFHHILADSERHF Trigger: GAAATGCCTTTCAGAGTCAGCAAGAATGTGGTGAAACCTGTGCAAATGATGTTTCAAAAGTCTACCTTTAAGATAACCTATATAGAAGAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059637.8 ENSMUST00000221681.2 |
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