Pregenerated sensors for SERPINB3D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058017

Ensembl transcript IDs: ENSMUST00000023861.5

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CACGAGACCTTGACTATTGCTCATGCCAGAGAAGTCAGCCTTCTGTaGATCAAAGGCGTCGACCATCCCCATGTGTTCCAATGGAACTCG	+
Preference number: 5 (lower is better) Translates to: HETLTIAHAREVSLL*IKGVDHPHVFQWNS Trigger: CGAGTTCCATTGGAACACATGGGGATGGTCGACGCCTTTGATCCACAGAAGGCTGACTTCTCTGGCATGAGCAATAGTCAAGGTCTCGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023861.5
CDS CCA 90 bp	AGCCTTCTGTGGATCAAAGGCGTCGACCATCCCCATGTGTTCCAATaGAACTCGGAGATCATACTTCTCTTCCACTTTGAACTGAGGCAA	+
Preference number: 5 (lower is better) Translates to: SLLWIKGVDHPHVFQ*NSEIILLFHFELRQ Trigger: TTGCCTCAGTTCAAAGTGGAAGAGAAGTATGATCTCCGAGTTCCATTGGAACACATGGGGATGGTCGACGCCTTTGATCCACAGAAGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023861.5
CDS TCA 90 bp	TGTTCCAATGGAACTCGGAGATCATACTTCTCTTCCACTTTGAACTaGGGCAAAGATAAATACAACTCGGTCATATGCATATTCTCTGCT	+
Preference number: 5 (lower is better) Translates to: CSNGTRRSYFSSTLN*GKDKYNSVICIFSA Trigger: AGCAGAGAATATGCATATGACCGAGTTGTATTTATCTTTGCCTCAGTTCAAAGTGGAAGAGAAGTATGATCTCCGAGTTCCATTGGAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023861.5
CDS TCA 90 bp	CCATGTGTTCCAATGGAACTCGGAGATCATACTTCTCTTCCACTTTaGACTGAGGCAAAGATAAATACAACTCGGTCATATGCATATTCT	+
Preference number: 5 (lower is better) Translates to: PCVPMELGDHTSLPL*TEAKINTTRSYAYS Trigger: AGAATATGCATATGACCGAGTTGTATTTATCTTTGCCTCAGTTCAAAGTGGAAGAGAAGTATGATCTCCGAGTTCCATTGGAACACATGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023861.5
CDS CCA 72 bp	TTGACTATTGCTCATGCCAGAGAAGTCAGCCTTCTGTaGATCAAAGGCGTCGACCATCCCCATGTGTTCCAA	+
Preference number: 6 (lower is better) Translates to: LTIAHAREVSLL*IKGVDHPHVFQ Trigger: TTGGAACACATGGGGATGGTCGACGCCTTTGATCCACAGAAGGCTGACTTCTCTGGCATGAGCAATAGTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023861.5
CDS CCA 72 bp	TGGATCAAAGGCGTCGACCATCCCCATGTGTTCCAATaGAACTCGGAGATCATACTTCTCTTCCACTTTGAA	+
Preference number: 6 (lower is better) Translates to: WIKGVDHPHVFQ*NSEIILLFHFE Trigger: TTCAAAGTGGAAGAGAAGTATGATCTCCGAGTTCCATTGGAACACATGGGGATGGTCGACGCCTTTGATCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023861.5
CDS TCA 72 bp	AAGGACTTGTGTAAAACTTTAGACACCACGAGACCTTaGCTATTGCTCATGCCAGAGAAGTCAGCCTTCTGT	+
Preference number: 6 (lower is better) Translates to: KDLCKTLDTTRP*LLLMPEKSAFC Trigger: ACAGAAGGCTGACTTCTCTGGCATGAGCAATAGTCAAGGTCTCGTGGTGTCTAAAGTTTTACACAAGTCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023861.5
CDS TCA 72 bp	TCTCTGCTCTTGTCCACTGTAGTAACTTGTCAGCAGTaGGTTGTTCTTCAAACTTCTTCAGTCCATCGATTT	+
Preference number: 6 (lower is better) Translates to: SLLLSTVVTCQQ*VVLQTSSVHRF Trigger: AAATCGATGGACTGAAGAAGTTTGAAGAACAACTCACTGCTGACAAGTTACTACAGTGGACAAGAGCAGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023861.5
CDS TCA 72 bp	CCAATGGAACTCGGAGATCATACTTCTCTTCCACTTTaGACTGAGGCAAAGATAAATACAACTCGGTCATAT	+
Preference number: 6 (lower is better) Translates to: PMELGDHTSLPL*TEAKINTTRSY Trigger: ATATGACCGAGTTGTATTTATCTTTGCCTCAGTTCAAAGTGGAAGAGAAGTATGATCTCCGAGTTCCATTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023861.5
CDS CAA 90 bp	TCCACAATCTTGGCCTGCACATTCTCCAGGAAGATGAAGTTAAATTaGTTTCTTTGTTTCATCATCTGGACAGGTTTACTTGTGTTCTTG	+
Preference number: 6 (lower is better) Translates to: STILACTFSRKMKLN*FLCFIIWTGLLVFL Trigger: CAAGAACACAAGTAAACCTGTCCAGATGATGAAACAAAGAAACAAATTTAACTTCATCTTCCTGGAGAATGTGCAGGCCAAGATTGTGGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023861.5
CDS CAA 72 bp	ATATGCATATTCTCTGCTCTTGTCCACTGTAGTAACTaGTCAGCAGTGAGTTGTTCTTCAAACTTCTTCAGT	+
Preference number: 6 (lower is better) Translates to: ICIFSALVHCSN*SAVSCSSNFFS Trigger: ACTGAAGAAGTTTGAAGAACAACTCACTGCTGACAAGTTACTACAGTGGACAAGAGCAGAGAATATGCATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023861.5

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