Pregenerated sensors for SERPINB3C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073601Ensembl transcript IDs: ENSMUST00000027565.5
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | TTAATCAGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCTTAGCTGTAGCAACCTaGTTAACTTTCTGGACACAT | + |
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Preference number: 3 (lower is better) Translates to: LISLKGRSDFSLAHLTQGLAVAT*LTFWTH Trigger: ATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAA...GCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACTGATTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR TCA 90 bp | CAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGAAGAGACACCACAGTGCTAATCTTAAAATaGCTTCCTCCCCCGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: QLAVATLLTFWTHGRDTTVLILK*LPPPRQ Trigger: CTGCCTCGGGGGAGGAAGTCATTTTAAGATTAGCAC...TGTGGTGTCTCTTCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR GCA 90 bp | GTTTCCATGCCTCAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGACTTGAGTGCTGCTCATaGCAGAGAAGTCAGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: VSMPQLAVATLLTFWTHGLECCS*QRSQPS Trigger: AGAAGGCTGACTTCTCTGGCATGAGCAGCACTCAAG...TCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTGAGGCATGGAAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR TCA 90 bp | GTTTCCATGCCTCAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGAGATTCCATCGTCCTTTaGAATACACTGCATTCACCA | + |
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Preference number: 4 (lower is better) Translates to: VSMPQLAVATLLTFWTHGDSIVL*NTLHSP Trigger: TGGTGAATGCAGTGTATTTCAAAGGACGATGGAATC...TCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTGAGGCATGGAAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR TCA 90 bp | AGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCACAGATGTAACTTGGCAGCAGTaGGTTGTTTTTCAAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: SLKGRSDFSLAHLTQGTDVTWQQ*VVFQAA Trigger: AGCAGCTTGAAAAACAACTCACTGCTGCCAAGTTAC...ATCTGTGCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR GCA 90 bp | GTTTCCATGCCTCAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGATCTGATTCTCTGAGCTaGCTGTACATTTCAACTGTG | + |
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Preference number: 4 (lower is better) Translates to: VSMPQLAVATLLTFWTHGSDSLS*LYISTV Trigger: CACAGTTGAAATGTACAGGCAGCTCAGAGAATCAGA...TCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTGAGGCATGGAAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR GCA 90 bp | AGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCACAGATTGCCAAAGAAGAGGATaGTGTTGGTCTTGCTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: SLKGRSDFSLAHLTQGTDCQRRG*CWSCCE Trigger: TTCACAGCAAGACCAACAGCATCCTCTTCTTTGGCA...ATCTGTGCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CCA 90 bp | GTTTCCATGCCTCAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGACTCTTTGCCTTTGTATaGTATTTCCACAATCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: VSMPQLAVATLLTFWTHGLFAFV*YFHNLG Trigger: GCCCAGATTGTGGAAATACCATACAAAGGCAAAGAG...TCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTGAGGCATGGAAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| 3UTR CAA 72 bp | AAACATGTTTCCATGCCTCAATTAGCTGTAGCAACCTaGTTAACTTTCTGGACACATGGAAGAGACACCACA | + |
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Preference number: 4 (lower is better) Translates to: KHVSMPQLAVAT*LTFWTHGRDTT Trigger: TGTGGTGTCTCTTCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTGAGGCATGGAAACATGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR TCA 90 bp | CAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGAAGAGACACCACACTGTTGGTCTTGCTGTaGATGATGAAGAATAGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: QLAVATLLTFWTHGRDTTLLVLL*MMKNRK Trigger: TTTCCTATTCTTCATCATTCACAGCAAGACCAACAG...TGTGGTGTCTCTTCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR GCA 90 bp | GTTTCCATGCCTCAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGATCTCGGTGGTTTCATTaGATTGAAGAACCTTCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: VSMPQLAVATLLTFWTHGSRWFH*IEEPSQ Trigger: TTGAGAAGGTTCTTCAATGCAATGAAACCACCGAGA...TCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTGAGGCATGGAAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR GCA 90 bp | CAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGAAGAGACACCACATTCATCATCGCAGTGTaGAGATTTTTCTGTTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: QLAVATLLTFWTHGRDTTFIIAV*RFFCCL Trigger: AAGACAACAGAAAAATCTGCACACTGCGATGATGAA...TGTGGTGTCTCTTCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CCA 90 bp | TTAATCAGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCACCATCGATTTCCATTaGCAGCAGGACAAACATACT | + |
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Preference number: 4 (lower is better) Translates to: LISLKGRSDFSLAHLTQGTIDFH*QQDKHT Trigger: AGTATGTTTGTCCTGCTGCCAATGGAAATCGATGGT...GCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACTGATTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR GCA 90 bp | AGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCACAGATTCCTTTGAAATACACTaGATTCACCAGAACCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: SLKGRSDFSLAHLTQGTDSFEIH*IHQNQF Trigger: AAACTGGTTCTGGTGAATGCAGTGTATTTCAAAGGA...ATCTGTGCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR GCA 90 bp | TTAATCAGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCAGTTGTTTTTCAAGCTaGTTCAGACCATCGATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LISLKGRSDFSLAHLTQGSCFSS*FRPSIS Trigger: GGAAATCGATGGTCTGAAGCAGCTTGAAAAACAACT...GCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACTGATTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR TCA 90 bp | TTAATCAGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCTGTACATTTCAACTGTaGATTTACCATCAGCTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LISLKGRSDFSLAHLTQGCTFQL*IYHQLQ Trigger: CTGAAGCTGATGGTAAATTCACAGTTGAAATGTACA...GCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACTGATTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR TCA 90 bp | TTAATCAGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCGTGGTTTCATTGCATTaGAGAACCTTCTCAATTTGT | + |
|
Preference number: 4 (lower is better) Translates to: LISLKGRSDFSLAHLTQGVVSLH*RTFSIC Trigger: ACAAATTGAGAAGGTTCTTCAATGCAATGAAACCAC...GCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACTGATTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CCA 90 bp | TTAATCAGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCTCTTCCAAAAATGTCTaGAGTAATGGGAAACCCTTT | + |
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Preference number: 4 (lower is better) Translates to: LISLKGRSDFSLAHLTQGSSKNV*SNGKPF Trigger: AAAGGGTTTCCCATTACTCCAGACATTTTTGGAAGA...GCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACTGATTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CAA 90 bp | GTTTCCATGCCTCAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGAGCATGTTTTCTGCTCTaGTCCACTCTAGTAACTTGG | + |
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Preference number: 5 (lower is better) Translates to: VSMPQLAVATLLTFWTHGACFLL*STLVTW Trigger: CCAAGTTACTAGAGTGGACAAGAGCAGAAAACATGC...TCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTGAGGCATGGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS GCA 90 bp | TCTTCCACTTTGAACCGAGGCAACCATAAATACAATTCAGTCAAATaGATGTTTTCTGCTCTTGTCCACTCTAGTAACTTGGCAGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: SSTLNRGNHKYNSVK*MFSALVHSSNLAAV Trigger: CACTGCTGCCAAGTTACTAGAGTGGACAAGAGCAGAAAACATGCATTTGACTGAATTGTATTTATGGTTGCCTCGGTTCAAAGTGGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CAA 90 bp | CAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGAAGAGACACCACAATTTCAGTGTTTCCTTaGGCTCCAAGCTTGAGCATT | + |
|
Preference number: 5 (lower is better) Translates to: QLAVATLLTFWTHGRDTTISVFP*APSLSI Trigger: AATGCTCAAGCTTGGAGCCAAAGGAAACACTGAAAT...TGTGGTGTCTCTTCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CAA 90 bp | AGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCACAGATTCGGGACAGGTATACTaGTGTTCTTGTTCAGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: SLKGRSDFSLAHLTQGTDSGQVY*CSCSAK Trigger: TTTGGCTGAACAAGAACACAAGTATACCTGTCCCGA...ATCTGTGCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CAA 90 bp | TTAATCAGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCCTTGGCAGCAGTGAGTaGTTTTTCAAGCTGCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: LISLKGRSDFSLAHLTQGLGSSE*FFKLLQ Trigger: CTGAAGCAGCTTGAAAAACAACTCACTGCTGCCAAG...GCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACTGATTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CAA 90 bp | CAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGAAGAGACACCACATACTTCTCTTCCACTTaGAACCGAGGCAACCATAAA | + |
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Preference number: 5 (lower is better) Translates to: QLAVATLLTFWTHGRDTTYFSST*NRGNHK Trigger: TTTATGGTTGCCTCGGTTCAAAGTGGAAGAGAAGTA...TGTGGTGTCTCTTCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CAA 90 bp | GTTTCCATGCCTCAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGAGGTGGTTTCATTGCATaGAAGAACCTTCTCAATTTG | + |
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Preference number: 5 (lower is better) Translates to: VSMPQLAVATLLTFWTHGGGFIA*KNLLNL Trigger: CAAATTGAGAAGGTTCTTCAATGCAATGAAACCACC...TCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTGAGGCATGGAAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CAA 90 bp | AGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCACAGATGTGCAGATTTTTCTGTaGTCTTCTCGGTGGTTTCAT | + |
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Preference number: 5 (lower is better) Translates to: SLKGRSDFSLAHLTQGTDVQIFL*SSRWFH Trigger: ATGAAACCACCGAGAAGACAACAGAAAAATCTGCAC...ATCTGTGCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS TCA 90 bp | CAGTGTGCAGATTTTTCTGTTGTCTTCTCGGTGGTTTCATTGCATTaGAGAACCTTCTCAATTTGTATTTCAGTGTTTCCTTTGGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: QCADFSVVFSVVSLH*RTFSICISVFPLAP Trigger: TGGAGCCAAAGGAAACACTGAAATACAAATTGAGAAGGTTCTTCAATGCAATGAAACCACCGAGAAGACAACAGAAAAATCTGCACACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS GCA 90 bp | CATCGCAGTGTGCAGATTTTTCTGTTGTCTTCTCGGTGGTTTCATTaGATTGAAGAACCTTCTCAATTTGTATTTCAGTGTTTCCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: HRSVQIFLLSSRWFH*IEEPSQFVFQCFLW Trigger: CCAAAGGAAACACTGAAATACAAATTGAGAAGGTTCTTCAATGCAATGAAACCACCGAGAAGACAACAGAAAAATCTGCACACTGCGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CAA 90 bp | CAATTAGCTGTAGCAACCTTGTTAACTTTCTGGACACATGGAAGAGACACCACAGGTATACTTGTGTTCTaGTTCAGCCAAAACATTTCT | + |
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Preference number: 5 (lower is better) Translates to: QLAVATLLTFWTHGRDTTGILVF*FSQNIS Trigger: AGAAATGTTTTGGCTGAACAAGAACACAAGTATACC...TGTGGTGTCTCTTCCATGTGTCCAGAAAGTTAACAAGGTTGCTACAGCTAATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS-3UTR CAA 90 bp | AGTTTAAAAGGAAGGTCTGATTTTTCTCTAGCTCACTTGACACAGGGCACAGATCATAAATTTGTTTCTTaGTTTCATCATCGGGACAGG | + |
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Preference number: 5 (lower is better) Translates to: SLKGRSDFSLAHLTQGTDHKFVS*FHHRDR Trigger: CCTGTCCCGATGATGAAACAAAGAAACAAATTTATG...ATCTGTGCCCTGTGTCAAGTGAGCTAGAGAAAAATCAGACCTTCCTTTTAAACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS TCA 72 bp | AAGGACTTGTGTAAAACTTTAGACACCACGAGACCTTaGGTGCTGCTCATGCCAGAGAAGTCAGCCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: KDLCKTLDTTRP*VLLMPEKSAFC Trigger: ACAGAAGGCTGACTTCTCTGGCATGAGCAGCACTCAAGGTCTCGTGGTGTCTAAAGTTTTACACAAGTCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CCA 72 bp | TGGATCAAAGGCATTGACCATCCCCATGCATTCCAATaGGACTGGGAGGTCATACTTCTCTTCCACTTTGAA | + |
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Preference number: 6 (lower is better) Translates to: WIKGIDHPHAFQ*DWEVILLFHFE Trigger: TTCAAAGTGGAAGAGAAGTATGACCTCCCAGTCCCATTGGAATGCATGGGGATGGTCAATGCCTTTGATCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS GCA 72 bp | TCTAGTAACTTGGCAGCAGTGAGTTGTTTTTCAAGCTaGTTCAGACCATCGATTTCCATTGGCAGCAGGACA | + |
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Preference number: 6 (lower is better) Translates to: SSNLAAVSCFSS*FRPSISIGSRT Trigger: TGTCCTGCTGCCAATGGAAATCGATGGTCTGAAGCAGCTTGAAAAACAACTCACTGCTGCCAAGTTACTAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS TCA 72 bp | TTTCTGCTCTTGTCCACTCTAGTAACTTGGCAGCAGTaGGTTGTTTTTCAAGCTGCTTCAGACCATCGATTT | + |
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Preference number: 6 (lower is better) Translates to: FLLLSTLVTWQQ*VVFQAASDHRF Trigger: AAATCGATGGTCTGAAGCAGCTTGAAAAACAACTCACTGCTGCCAAGTTACTAGAGTGGACAAGAGCAGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS TCA 72 bp | CCAATGGGACTGGGAGGTCATACTTCTCTTCCACTTTaGACCGAGGCAACCATAAATACAATTCAGTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: PMGLGGHTSLPL*TEATINTIQSN Trigger: ATTTGACTGAATTGTATTTATGGTTGCCTCGGTTCAAAGTGGAAGAGAAGTATGACCTCCCAGTCCCATTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CAA 72 bp | TCCAATGGGACTGGGAGGTCATACTTCTCTTCCACTTaGAACCGAGGCAACCATAAATACAATTCAGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: SNGTGRSYFSST*NRGNHKYNSVK Trigger: TTTGACTGAATTGTATTTATGGTTGCCTCGGTTCAAAGTGGAAGAGAAGTATGACCTCCCAGTCCCATTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CAA 72 bp | GTGCTACTGCTCAGGCTCCCACTAGGAAATAAGTCTTaGATTTTTCCGTTTGTTTCGTTTTTCACCCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: VLLLRLPLGNKS*IFPFVSFFTQK Trigger: TTTCTGGGTGAAAAACGAAACAAACGGAAAAATCAAAGACTTATTTCCTAGTGGGAGCCTGAGCAGTAGCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CAA 72 bp | AAATGCATGTTTTCTGCTCTTGTCCACTCTAGTAACTaGGCAGCAGTGAGTTGTTTTTCAAGCTGCTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: KCMFSALVHSSN*AAVSCFSSCFR Trigger: TCTGAAGCAGCTTGAAAAACAACTCACTGCTGCCAAGTTACTAGAGTGGACAAGAGCAGAAAACATGCATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CAA 90 bp | GCAGTGTGCAGATTTTTCTGTTGTCTTCTCGGTGGTTTCATTGCATaGAAGAACCTTCTCAATTTGTATTTCAGTGTTTCCTTTGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: AVCRFFCCLLGGFIA*KNLLNLYFSVSFGS Trigger: GGAGCCAAAGGAAACACTGAAATACAAATTGAGAAGGTTCTTCAATGCAATGAAACCACCGAGAAGACAACAGAAAAATCTGCACACTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CAA 90 bp | AATTCAGTCAAATGCATGTTTTCTGCTCTTGTCCACTCTAGTAACTaGGCAGCAGTGAGTTGTTTTTCAAGCTGCTTCAGACCATCGATT | + |
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Preference number: 6 (lower is better) Translates to: NSVKCMFSALVHSSN*AAVSCFSSCFRPSI Trigger: AATCGATGGTCTGAAGCAGCTTGAAAAACAACTCACTGCTGCCAAGTTACTAGAGTGGACAAGAGCAGAAAACATGCATTTGACTGAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CCA 72 bp | CATCGCAGTGTGCAGATTTTTCTGTTGTCTTCTCGGTaGTTTCATTGCATTGAAGAACCTTCTCAATTTGTA | + |
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Preference number: 6 (lower is better) Translates to: HRSVQIFLLSSR*FHCIEEPSQFV Trigger: TACAAATTGAGAAGGTTCTTCAATGCAATGAAACCACCGAGAAGACAACAGAAAAATCTGCACACTGCGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CAA 72 bp | CATTATCTTCATCATCGCAGTGTGCAGATTTTTCTGTaGTCTTCTCGGTGGTTTCATTGCATTGAAGAACCT | + |
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Preference number: 6 (lower is better) Translates to: HYLHHRSVQIFL*SSRWFHCIEEP Trigger: AGGTTCTTCAATGCAATGAAACCACCGAGAAGACAACAGAAAAATCTGCACACTGCGATGATGAAGATAATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CAA 90 bp | GTTCATGGACATTATCTTCATCATCGCAGTGTGCAGATTTTTCTGTaGTCTTCTCGGTGGTTTCATTGCATTGAAGAACCTTCTCAATTT | + |
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Preference number: 6 (lower is better) Translates to: VHGHYLHHRSVQIFL*SSRWFHCIEEPSQF Trigger: AAATTGAGAAGGTTCTTCAATGCAATGAAACCACCGAGAAGACAACAGAAAAATCTGCACACTGCGATGATGAAGATAATGTCCATGAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CAA 90 bp | ACCAGTTTAGTGCTACTGCTCAGGCTCCCACTAGGAAATAAGTCTTaGATTTTTCCGTTTGTTTCGTTTTTCACCCAGAAATTAATCTTC | + |
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Preference number: 6 (lower is better) Translates to: TSLVLLLRLPLGNKS*IFPFVSFFTQKLIF Trigger: GAAGATTAATTTCTGGGTGAAAAACGAAACAAACGGAAAAATCAAAGACTTATTTCCTAGTGGGAGCCTGAGCAGTAGCACTAAACTGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS TCA 72 bp | CTTTTCACTCTCTTCTGCTGCATGTTCGAAATCCAGTaGTTCCACGTTAGCATGATAATATTCCTTAATGTC | + |
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Preference number: 6 (lower is better) Translates to: LFTLFCCMFEIQ*FHVSMIIFLNV Trigger: GACATTAAGGAATATTATCATGCTAACGTGGAATCACTGGATTTCGAACATGCAGCAGAAGAGAGTGAAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CAA 72 bp | CTTTGTTTCATCATCGGGACAGGTATACTTGTGTTCTaGTTCAGCCAAAACATTTCTTCTATGGTATTGTTT | + |
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Preference number: 6 (lower is better) Translates to: LCFIIGTGILVF*FSQNISSMVLF Trigger: AAACAATACCATAGAAGAAATGTTTTGGCTGAACAAGAACACAAGTATACCTGTCCCGATGATGAAACAAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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| CDS CAA 72 bp | ATTTGTTTCTTTGTTTCATCATCGGGACAGGTATACTaGTGTTCTTGTTCAGCCAAAACATTTCTTCTATGG | + |
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Preference number: 6 (lower is better) Translates to: ICFFVSSSGQVY*CSCSAKTFLLW Trigger: CCATAGAAGAAATGTTTTGGCTGAACAAGAACACAAGTATACCTGTCCCGATGATGAAACAAAGAAACAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027565.5 |
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