Pregenerated sensors for SERPINB1C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079049Ensembl transcript IDs: ENSMUST00000021834.11, ENSMUST00000221019.2
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAAGAGCACATGAGCCGTGGGATTGTGCCGAATGAAGAAAAGGAATaGATGGTCCACCGTGAATTCCATGGGCATCAGGCAGCATCCAAC | + |
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Preference number: 1 (lower is better) Translates to: EEHMSRGIVPNEEKE*MVHREFHGHQAASN Trigger: GTTGGATGCTGCCTGATGCCCATGGAATTCACGGTGGACCATCCATTCCTTTTCTTCATTCGGCACAATCCCACGGCTCATGTGCTCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCTTCTATGGGGAACAAACCCTGCCAAGGAAGAGCACATGAGCCGTGGGATTCAACAGTGCCTGGCATaGCAGCATCTGTCTCTGTTC | + |
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Preference number: 2 (lower is better) Translates to: LLLWGTNPAKEEHMSRGIQQCLA*QHLSLF Trigger: GAACAGAGACAGATGCTGCCATGCCAGGCACTGTTG...AATCCCACGGCTCATGTGCTCTTCCTTGGCAGGGTTTGTTCCCCATAGAAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGCCAAGGAAGAGCACATGAGCCGTGGGATTGTGCCGAATGAAGAAAAGGAAGCATCTCCAGCACCTTaGACTTCAGGTCTTCTGTTT | + |
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Preference number: 2 (lower is better) Translates to: PAKEEHMSRGIVPNEEKEASPAP*TSGLLF Trigger: AAACAGAAGACCTGAAGTGCAAGGTGCTGGAGATGC...TTCCTTTTCTTCATTCGGCACAATCCCACGGCTCATGTGCTCTTCCTTGGCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR-3UTR CCA 90 bp | TCTATGGGGAACAAACCCTGCCAAGGAAGAGCACATGAGCCGTGGGATTGTGCCAAGAAAAGGAATGGATaGTCCACCGTGAATTCCATG | + |
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Preference number: 2 (lower is better) Translates to: SMGNKPCQGRAHEPWDCAKKRNG*STVNSM Trigger: CATGGAATTCACGGTGGACCATCCATTCCTTTTCTT...GGCACAATCCCACGGCTCATGTGCTCTTCCTTGGCAGGGTTTGTTCCCCATAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR-3UTR TCA 90 bp | GTATCTCTAAAGTCTCCTTCTTCTATGGGGAACAAACCCTGCCAAGGAAGAGCATGGGATTGTGCCGAATaGAGAAAAGGAATGGATGGT | + |
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Preference number: 2 (lower is better) Translates to: VSLKSPSSMGNKPCQGRAWDCAE*RKGMDG Trigger: ACCATCCATTCCTTTTCTTCATTCGGCACAATCCCA...TGCTCTTCCTTGGCAGGGTTTGTTCCCCATAGAAGAAGGAGACTTTAGAGATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR-3UTR CCA 90 bp | AACTCTAAGCTCTGCCTTGTATCTCTAAAGTCTCCTTCTTCTATGGGGAACAAAAATGAAGAAAAGGAATaGATGGTCCACCGTGAATTC | + |
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Preference number: 2 (lower is better) Translates to: NSKLCLVSLKSPSSMGNKNEEKE*MVHREF Trigger: GAATTCACGGTGGACCATCCATTCCTTTTCTTCATT...TTTGTTCCCCATAGAAGAAGGAGACTTTAGAGATACAAGGCAGAGCTTAGAGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR-3UTR CCA 90 bp | CATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAACTGATAGAGGTTTTATaGTCAAGGGCAAGTGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: HAKRHGYKKPMELCSFLQLIEVL*SRASEN Trigger: ATTTTCACTTGCCCTTGACCATAAAACCTCTATCAG...TTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000021834.11 ENSMUST00000221019.2 |
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| 3UTR-3UTR CCA 90 bp | ATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAACTGATAGAGGTTTTATaGTCAAGGGCAAGTGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: MPKDMDIKSQWSCALSYKLIEVL*SRASEN Trigger: ATTTTCACTTGCCCTTGACCATAAAACCTCTATCAG...TTTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000021834.11 ENSMUST00000221019.2 |
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| 3UTR-3UTR CCA 90 bp | ACTGATTTAGGAAAAGCTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTGATATAAAAAGCCAATaGAGTTGTGCTCTTTCTTAC | + |
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Preference number: 2 (lower is better) Translates to: TDLGKATYFHACQYCRSIDIKSQ*SCALSY Trigger: GTAAGAAAGAGCACAACTCCATTGGCTTTTTATATC...AATTGACCTACAGTACTGACAGGCATGAAAATATGTAGCTTTTCCTAAATCAGT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| 3UTR CCA 72 bp | TTCCATGGGCATCAGGCAGCATCCAACAACAGTGCCTaGCATGGCAGCATCTGTCTCTGTTCCCTCCTCATT | + |
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Preference number: 3 (lower is better) Translates to: FHGHQAASNNSA*HGSICLCSLLI Trigger: AATGAGGAGGGAACAGAGACAGATGCTGCCATGCCAGGCACTGTTGTTGGATGCTGCCTGATGCCCATGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR-3UTR CAA 90 bp | TCAGGCAGCATCCAACAACAGTGCCTGGCATGGCAGCATCTGTCTCTGTTCCCTCCAGAGAGATCAGCTTaGCTGCTGCTAAAGAGATCC | + |
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Preference number: 3 (lower is better) Translates to: SGSIQQQCLAWQHLSLFPPERSA*LLLKRS Trigger: GGATCTCTTTAGCAGCAGCAAAGCTGATCTCTCTGG...AGGGAACAGAGACAGATGCTGCCATGCCAGGCACTGTTGTTGGATGCTGCCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR GCA 72 bp | CCAGAGAGATCAGCTTTGCTGCTGCTAAAGAGATCCTaGACTCCCAGTTGGCCCAGGTTAGAGTTGAGGATG | + |
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Preference number: 3 (lower is better) Translates to: PERSALLLLKRS*TPSWPRLELRM Trigger: CATCCTCAACTCTAACCTGGGCCAACTGGGAGTGCAGGATCTCTTTAGCAGCAGCAAAGCTGATCTCTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR GCA 72 bp | TCTCTAAAGTCTCCTTCTTCTATGGGGAACAAACCCTaGCAAGGAAGAGCACATGAGCCGTGGGATTGTGCC | + |
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Preference number: 3 (lower is better) Translates to: SLKSPSSMGNKP*QGRAHEPWDCA Trigger: GGCACAATCCCACGGCTCATGTGCTCTTCCTTGGCAGGGTTTGTTCCCCATAGAAGAAGGAGACTTTAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR CCA 72 bp | ATGAGCCGTGGGATTGTGCCGAATGAAGAAAAGGAATaGATGGTCCACCGTGAATTCCATGGGCATCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: MSRGIVPNEEKE*MVHREFHGHQA Trigger: TGCCTGATGCCCATGGAATTCACGGTGGACCATCCATTCCTTTTCTTCATTCGGCACAATCCCACGGCTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR-3UTR CAA 90 bp | ACAAACCCTGCCAAGGAAGAGCACATGAGCCGTGGGATTGTGCCGAATGAAGAATCTTCCATCTTGAATTaGGGCAATTTGACACAGACA | + |
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Preference number: 3 (lower is better) Translates to: TNPAKEEHMSRGIVPNEESSILN*GNLTQT Trigger: TGTCTGTGTCAAATTGCCCAAATTCAAGATGGAAGA...TTCTTCATTCGGCACAATCCCACGGCTCATGTGCTCTTCCTTGGCAGGGTTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| 3UTR-3UTR CAA 90 bp | CATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAACTTTAAACATGACATaGTTGACAGTGACAACAGCA | + |
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Preference number: 3 (lower is better) Translates to: HAKRHGYKKPMELCSFLQTLNMT*LTVTTA Trigger: TGCTGTTGTCACTGTCAACAATGTCATGTTTAAAGT...TTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| 3UTR CAA 72 bp | AGCTTTGCTGCTGCTAAAGAGATCCTGCACTCCCAGTaGGCCCAGGTTAGAGTTGAGGATGTAGCTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SFAAAKEILHSQ*AQVRVEDVALF Trigger: GAAGAGAGCTACATCCTCAACTCTAACCTGGGCCAACTGGGAGTGCAGGATCTCTTTAGCAGCAGCAAAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| CDS-3UTR TCA 90 bp | CTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTGTACAGGTTACCTTATCCAAGGAAGAGCACATaGGCCGTGGGATTGTGCCGA | + |
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Preference number: 4 (lower is better) Translates to: LHIFMPVSTVGQLYRLPYPRKST*AVGLCR Trigger: TCGGCACAATCCCACGGCTCATGTGCTCTTCCTTGG...ATAAGGTAACCTGTACAATTGACCTACAGTACTGACAGGCATGAAAATATGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR GCA 90 bp | CAGTACTGTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATGTTGGGCTGCAGTGCTaGCTCTGGCCCCCAGATAGA | + |
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Preference number: 4 (lower is better) Translates to: QYCRSIVQVTLWSENYIYVGLQC*LWPPDR Trigger: TCTATCTGGGGGCCAGAGGCAGCACTGCAGCCCAAC...ATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTACAGTACTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR GCA 90 bp | GTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATTTTGTCCAGAGTTGGGCTGCAGTaGTGCCTCTGGCCCCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: VGQLYRLPYGQKTISILSRVGLQ*CLWPPD Trigger: ATCTGGGGGCCAGAGGCAGCACTGCAGCCCAACTCT...GGACAAAATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | ATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAACTGCAGTGCTGCCTCTaGCCCCCAGATAGACCATGG | + |
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Preference number: 4 (lower is better) Translates to: MPKDMDIKSQWSCALSYKLQCCL*PPDRPW Trigger: CCATGGTCTATCTGGGGGCCAGAGGCAGCACTGCAG...TTTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR GCA 90 bp | CATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAGAGATGCTCCACGCTTaGTCACTTCAGCAGTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: HAKRHGYKKPMELCSFLQEMLHA*SLQQSG Trigger: GCCTGACTGCTGAAGTGAGCAAGCGTGGAGCATCTC...TTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | CATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAACCCCCAGATAGACCATaGCCAAGGCAGAAGAAATGC | + |
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Preference number: 4 (lower is better) Translates to: HAKRHGYKKPMELCSFLQPPDRP*PRQKKC Trigger: GCATTTCTTCTGCCTTGGCCATGGTCTATCTGGGGG...TTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR TCA 90 bp | ACTGATTTAGGAAAAGCTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTGCAAGTTTCAGAGTGTaGGATGCTCCACGCTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: TDLGKATYFHACQYCRSIASFRV*DAPRLL Trigger: GAGCAAGCGTGGAGCATCTCACACTCTGAAACTTGC...AATTGACCTACAGTACTGACAGGCATGAAAATATGTAGCTTTTCCTAAATCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | GTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATTTTGTCCAGAGTCTTAGAGAGTTaGGCTGCAGTGCTGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: VGQLYRLPYGQKTISILSRVLES*AAVLPL Trigger: CAGAGGCAGCACTGCAGCCCAACTCTCTAAGACTCT...GGACAAAATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | GTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATTTTGTCCCTTACTCAGTCGGAATaGAGCATCGGTTGTGTCCCG | + |
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Preference number: 4 (lower is better) Translates to: VGQLYRLPYGQKTISILSLTQSE*SIGCVP Trigger: CGGGACACAACCGATGCTCCATTCCGACTGAGTAAG...GGACAAAATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | ATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAACAACAGTGCCTGGCATaGCAGCATCTGTCTCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: MPKDMDIKSQWSCALSYKQQCLA*QHLSLF Trigger: GAACAGAGACAGATGCTGCCATGCCAGGCACTGTTG...TTTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | GTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATTTTGTCCTCCAACAACAGTGCCTaGCATGGCAGCATCTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: VGQLYRLPYGQKTISILSSNNSA*HGSICL Trigger: GAGACAGATGCTGCCATGCCAGGCACTGTTGTTGGA...GGACAAAATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR GCA 90 bp | CATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAATATTTCCTGTGGGGTTaGTCTCATTCAGGGTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: HAKRHGYKKPMELCSFLQYFLWG*SHSGCG Trigger: TCCACACCCTGAATGAGAGCAACCCCACAGGAAATA...TTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR GCA 90 bp | ACTGATTTAGGAAAAGCTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTGCATCTCCAGCACCTTaGACTTCAGGTCTGGAATGT | + |
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Preference number: 4 (lower is better) Translates to: TDLGKATYFHACQYCRSIASPAP*TSGLEC Trigger: ACATTCCAGACCTGAAGTGCAAGGTGCTGGAGATGC...AATTGACCTACAGTACTGACAGGCATGAAAATATGTAGCTTTTCCTAAATCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR GCA 90 bp | GTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATTTTGTCCATGGGGAACAAACCCTaGCAAGGAAGAGCACATGAG | + |
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Preference number: 4 (lower is better) Translates to: VGQLYRLPYGQKTISILSMGNKP*QGRAHE Trigger: CTCATGTGCTCTTCCTTGGCAGGGTTTGTTCCCCAT...GGACAAAATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | CATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAACTCTCATTCAGGGTGTaGAACAGCTCCAAAGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: HAKRHGYKKPMELCSFLQLSFRV*NSSKAK Trigger: CTTTGCTTTGGAGCTGTTCCACACCCTGAATGAGAG...TTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | AGTTTTTCCAAAGTTAATTGTTTCTCAATCTCCTCAAGACCTGTGGTCTCGTCCGCACTGTACGTTTTCTaGATTGAAGCCAAGTACTCA | + |
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Preference number: 4 (lower is better) Translates to: SFSKVNCFSISSRPVVSSALYVF*IEAKYS Trigger: TGAGTACTTGGCTTCAATCCAGAAAACGTACAGTGC...GGACGAGACCACAGGTCTTGAGGAGATTGAGAAACAATTAACTTTGGAAAAACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| CDS-3UTR TCA 90 bp | CTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTGTACAGGTTACCTTATTGGGATTGTGCCGAATaGAGAAAAGGAATGGATGGT | + |
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Preference number: 4 (lower is better) Translates to: LHIFMPVSTVGQLYRLPYWDCAE*RKGMDG Trigger: ACCATCCATTCCTTTTCTTCATTCGGCACAATCCCA...ATAAGGTAACCTGTACAATTGACCTACAGTACTGACAGGCATGAAAATATGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR GCA 90 bp | CATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAGTTTATCTCCTTCCTTaGATCCTCAGAAGCATGCTG | + |
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Preference number: 4 (lower is better) Translates to: HAKRHGYKKPMELCSFLQVYLLP*ILRSML Trigger: CAGCATGCTTCTGAGGATGCAAGGAAGGAGATAAAC...TTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | GTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATTTTGTCCAGATGGTATTTCCTGTaGGGTTGCTCTCATTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: VGQLYRLPYGQKTISILSRWYFL*GCSHSG Trigger: CCCTGAATGAGAGCAACCCCACAGGAAATACCATCT...GGACAAAATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR TCA 90 bp | ACTGATTTAGGAAAAGCTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTCTTCTGTTTGACCTTTaGCCCACTGGTTTATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: TDLGKATYFHACQYCRSILLFDL*PTGLSP Trigger: AGGAGATAAACCAGTGGGTCAAAGGTCAAACAGAAG...AATTGACCTACAGTACTGACAGGCATGAAAATATGTAGCTTTTCCTAAATCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR TCA 90 bp | ATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAATCTGCCACATTCCCTTaGAATAGGTGGCATTCACTA | + |
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Preference number: 4 (lower is better) Translates to: MPKDMDIKSQWSCALSYKSATFP*NRWHSL Trigger: TAGTGAATGCCACCTATTTCAAGGGAATGTGGCAGA...TTTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | CTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTGTACAGGTTACCTTATGCACTGTACGTTTTCTaGATTGAAGCCAAGTACTCA | + |
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Preference number: 4 (lower is better) Translates to: LHIFMPVSTVGQLYRLPYALYVF*IEAKYS Trigger: TGAGTACTTGGCTTCAATCCAGAAAACGTACAGTGC...ATAAGGTAACCTGTACAATTGACCTACAGTACTGACAGGCATGAAAATATGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR GCA 90 bp | ACTGATTTAGGAAAAGCTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTTCAGCAGAGTCAAAATaGAGAGTCTTAGAGAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: TDLGKATYFHACQYCRSISAESK*RVLESW Trigger: CCAACTCTCTAAGACTCTGCATTTTGACTCTGCTGA...AATTGACCTACAGTACTGACAGGCATGAAAATATGTAGCTTTTCCTAAATCAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | GTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATTTTGTCCAAGAAAAGGAATGGATaGTCCACCGTGAATTCCATG | + |
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Preference number: 4 (lower is better) Translates to: VGQLYRLPYGQKTISILSKKRNG*STVNSM Trigger: CATGGAATTCACGGTGGACCATCCATTCCTTTTCTT...GGACAAAATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CCA 90 bp | CATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAAATGAAGAAAAGGAATaGATGGTCCACCGTGAATTC | + |
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Preference number: 4 (lower is better) Translates to: HAKRHGYKKPMELCSFLQNEEKE*MVHREF Trigger: GAATTCACGGTGGACCATCCATTCCTTTTCTTCATT...TTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR TCA 90 bp | ATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAAATTTTCTCTTCTGTTTaGCCTTTGACCCACTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: MPKDMDIKSQWSCALSYKIFSSV*PLTHWF Trigger: AAACCAGTGGGTCAAAGGTCAAACAGAAGAGAAAAT...TTTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR TCA 90 bp | CAGTACTGTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATTCTTCACTGTTTTTGTaGCTTTCTTACTCAGTCGGA | + |
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Preference number: 4 (lower is better) Translates to: QYCRSIVQVTLWSENYIYSSLFL*LSYSVG Trigger: TCCGACTGAGTAAGAAAGTCACAAAAACAGTGAAGA...ATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTACAGTACTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| 3UTR CAA 72 bp | CTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATaGTACAGGTTACCTTATGGTCAGAAAACTATATCT | + |
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Preference number: 4 (lower is better) Translates to: LHIFMPVSTVGQ*YRLPYGQKTIS Trigger: AGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTACAGTACTGACAGGCATGAAAATATGTAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CAA 90 bp | TCCACCCTGGTAAGGCATCTCCAGCACCTTGCACTTCAGGTCTTCTGTTTGACCTGTACGTTTTCTGGATaGAAGCCAAGTACTCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: STLVRHLQHLALQVFCLTCTFSG*KPSTQE Trigger: TTCCTGAGTACTTGGCTTCAATCCAGAAAACGTACA...GGTCAAACAGAAGACCTGAAGTGCAAGGTGCTGGAGATGCCTTACCAGGGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221019.2 |
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| CDS TCA 90 bp | AGATGCTCCACGCTTGCTCACTTCAGCAGTCAGGCTTTGAAACTGTaGATGGATGTCCTCAGCAGAGTCAAAATGCAGAGTCTTAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: RCSTLAHFSSQALKL*MDVLSRVKMQSLRE Trigger: CTCTCTAAGACTCTGCATTTTGACTCTGCTGAGGACATCCATTCACAGTTTCAAAGCCTGACTGCTGAAGTGAGCAAGCGTGGAGCATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS TCA 90 bp | TTGACCCACTGGTTTATCTCCTTCCTTGCATCCTCAGAAGCATGCTaGAAATCCACAAGGGCCAAGTCAGCACTGTACGTTTTCTGGATT | + |
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Preference number: 5 (lower is better) Translates to: LTHWFISFLASSEAC*KSTRAKSALYVFWI Trigger: AATCCAGAAAACGTACAGTGCTGACTTGGCCCTTGTGGATTTTCAGCATGCTTCTGAGGATGCAAGGAAGGAGATAAACCAGTGGGTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS TCA 90 bp | CACCCACAGCAAACAGTTCCTGAATTTTCTCTTCTGTTTGACCTTTaGCCCACTGGTTTATCTCCTTCCTTGCATCCTCAGAAGCATGCT | + |
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Preference number: 5 (lower is better) Translates to: HPQQTVPEFSLLFDL*PTGLSPSLHPQKHA Trigger: AGCATGCTTCTGAGGATGCAAGGAAGGAGATAAACCAGTGGGTCAAAGGTCAAACAGAAGAGAAAATTCAGGAACTGTTTGCTGTGGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CAA 90 bp | ACTGATTTAGGAAAAGCTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTCAGAGTCTTAGAGAGTaGGGCTGCAGTGCTGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: TDLGKATYFHACQYCRSIQSLRE*GCSAAS Trigger: AGAGGCAGCACTGCAGCCCAACTCTCTAAGACTCTG...AATTGACCTACAGTACTGACAGGCATGAAAATATGTAGCTTTTCCTAAATCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CAA 90 bp | ACTGATTTAGGAAAAGCTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTATCCTGCACTCCCAGTaGGCCCAGGTTAGAGTTGAG | + |
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Preference number: 5 (lower is better) Translates to: TDLGKATYFHACQYCRSIILHSQ*AQVRVE Trigger: CTCAACTCTAACCTGGGCCAACTGGGAGTGCAGGAT...AATTGACCTACAGTACTGACAGGCATGAAAATATGTAGCTTTTCCTAAATCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CAA 90 bp | ATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAATCCAAAGCAAAGAGGTaGTTGGCTGAACTCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: MPKDMDIKSQWSCALSYKSKAKR*LAELSC Trigger: GCAGCTGAGTTCAGCCAACAACCTCTTTGCTTTGGA...TTTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CAA 90 bp | GTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATTTTGTCCCCAGAGAGATCAGCTTaGCTGCTGCTAAAGAGATCC | + |
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Preference number: 5 (lower is better) Translates to: VGQLYRLPYGQKTISILSPERSA*LLLKRS Trigger: GGATCTCTTTAGCAGCAGCAAAGCTGATCTCTCTGG...GGACAAAATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CAA 90 bp | CAGTACTGTAGGTCAATTGTACAGGTTACCTTATGGTCAGAAAACTATATCTATGGTTTATCTCCTTCCTaGCATCCTCAGAAGCATGCT | + |
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Preference number: 5 (lower is better) Translates to: QYCRSIVQVTLWSENYIYGLSPS*HPQKHA Trigger: AGCATGCTTCTGAGGATGCAAGGAAGGAGATAAACC...ATAGATATAGTTTTCTGACCATAAGGTAACCTGTACAATTGACCTACAGTACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CAA 90 bp | CTACATATTTTCATGCCTGTCAGTACTGTAGGTCAATTGTACAGGTTACCTTATTGTACGTTTTCTGGATaGAAGCCAAGTACTCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: LHIFMPVSTVGQLYRLPYCTFSG*KPSTQE Trigger: TTCCTGAGTACTTGGCTTCAATCCAGAAAACGTACA...ATAAGGTAACCTGTACAATTGACCTACAGTACTGACAGGCATGAAAATATGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS-3UTR CAA 90 bp | ATGCCAAAAGACATGGATATAAAAAGCCAATGGAGTTGTGCTCTTTCTTACAAATCTTCCATCTTGAATTaGGGCAATTTGACACAGACA | + |
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Preference number: 5 (lower is better) Translates to: MPKDMDIKSQWSCALSYKSSILN*GNLTQT Trigger: TGTCTGTGTCAAATTGCCCAAATTCAAGATGGAAGA...TTTGTAAGAAAGAGCACAACTCCATTGGCTTTTTATATCCATGTCTTTTGGCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS CAA 72 bp | GTCCTCAGCAGAGTCAAAATGCAGAGTCTTAGAGAGTaGGGCTGCAGTGCTGCCTCTGGCCCCCAGATAGAC | + |
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Preference number: 6 (lower is better) Translates to: VLSRVKMQSLRE*GCSAASGPQID Trigger: GTCTATCTGGGGGCCAGAGGCAGCACTGCAGCCCAACTCTCTAAGACTCTGCATTTTGACTCTGCTGAGGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS TCA 72 bp | GATGCTCCACGCTTGCTCACTTCAGCAGTCAGGCTTTaGAACTGTGAATGGATGTCCTCAGCAGAGTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: DAPRLLTSAVRL*NCEWMSSAESK Trigger: TTTTGACTCTGCTGAGGACATCCATTCACAGTTTCAAAGCCTGACTGCTGAAGTGAGCAAGCGTGGAGCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS TCA 72 bp | TTCTCTCCATACAGTCTGTTAGCAAGTTTCAGAGTGTaGGATGCTCCACGCTTGCTCACTTCAGCAGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: FSPYSLLASFRV*DAPRLLTSAVR Trigger: CCTGACTGCTGAAGTGAGCAAGCGTGGAGCATCTCACACTCTGAAACTTGCTAACAGACTGTATGGAGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS GCA 72 bp | TCCATACAGTCTGTTAGCAAGTTTCAGAGTGTGAGATaGTCCACGCTTGCTCACTTCAGCAGTCAGGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: SIQSVSKFQSVR*STLAHFSSQAL Trigger: CAAAGCCTGACTGCTGAAGTGAGCAAGCGTGGAGCATCTCACACTCTGAAACTTGCTAACAGACTGTATGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS CCA 72 bp | ATGGTATTTCCTGTGGGGTTGCTCTCATTCAGGGTGTaGAACAGCTCCAAAGCAAAGAGGTTGTTGGCTGAA | + |
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Preference number: 6 (lower is better) Translates to: MVFPVGLLSFRV*NSSKAKRLLAE Trigger: TTCAGCCAACAACCTCTTTGCTTTGGAGCTGTTCCACACCCTGAATGAGAGCAACCCCACAGGAAATACCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS CAA 90 bp | GTCCACCACACCCACAGCAAACAGTTCCTGAATTTTCTCTTCTGTTaGACCTTTGACCCACTGGTTTATCTCCTTCCTTGCATCCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: VHHTHSKQFLNFLFC*TFDPLVYLLPCILR Trigger: TCTGAGGATGCAAGGAAGGAGATAAACCAGTGGGTCAAAGGTCAAACAGAAGAGAAAATTCAGGAACTGTTTGCTGTGGGTGTGGTGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS TCA 72 bp | ACGCTTGCTCACTTCAGCAGTCAGGCTTTGAAACTGTaGATGGATGTCCTCAGCAGAGTCAAAATGCAGAGT | + |
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Preference number: 6 (lower is better) Translates to: TLAHFSSQALKL*MDVLSRVKMQS Trigger: ACTCTGCATTTTGACTCTGCTGAGGACATCCATTCACAGTTTCAAAGCCTGACTGCTGAAGTGAGCAAGCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS CAA 72 bp | CCACAAGGGCCAAGTCAGCACTGTACGTTTTCTGGATaGAAGCCAAGTACTCAGGAAGGAAGTTGTAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: PQGPSQHCTFSG*KPSTQEGSCRF Trigger: AAACCTACAACTTCCTTCCTGAGTACTTGGCTTCAATCCAGAAAACGTACAGTGCTGACTTGGCCCTTGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021834.11 ENSMUST00000221019.2 |
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| CDS TCA 72 bp | CAAACAGTTCCTGAATTTTCTCTTCTGTTTGACCTTTaGCCCACTGGTTTATCTCCTTCCTTGCATCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: QTVPEFSLLFDL*PTGLSPSLHPQ Trigger: CTGAGGATGCAAGGAAGGAGATAAACCAGTGGGTCAAAGGTCAAACAGAAGAGAAAATTCAGGAACTGTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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| CDS TCA 72 bp | GATTATTCTTTAGATACATCATCTTCACTGTTTTTGTaGCTTTCTTACTCAGTCGGAATGGAGCATCGGTTG | + |
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Preference number: 6 (lower is better) Translates to: DYSLDTSSSLFL*LSYSVGMEHRL Trigger: CAACCGATGCTCCATTCCGACTGAGTAAGAAAGTCACAAAAACAGTGAAGATGATGTATCTAAAGAATAATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021834.11 |
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