Pregenerated sensors for SERPINB11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026327Ensembl transcript IDs: ENSMUST00000027566.3, ENSMUST00000191425.7
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACCTGACCTGCTTTGCAGATaGCCAAAAGCTGAGATGCAA | + |
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Preference number: 2 (lower is better) Translates to: PRSLIHNLTHRKTKHIKPDLLCR*PKAEMQ Trigger: TTGCATCTCAGCTTTTGGTCATCTGCAAAGCAGGTC...AGGTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| 3UTR TCA 72 bp | GATAAGTCTGAGGCGATAGTAGACCTGCTTTGCAGATaGCCAAAAGCTGAGATGCAAAGGTTCAGCCCCTTC | + |
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Preference number: 3 (lower is better) Translates to: DKSEAIVDLLCR*PKAEMQRFSPF Trigger: GAAGGGGCTGAACCTTTGCATCTCAGCTTTTGGTCATCTGCAAAGCAGGTCTACTATCGCCTCAGACTTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| 3UTR TCA 72 bp | TCTCTGTTAAATCAATTATGCCACTCTGTACTCAGATaGGGTCTCAAAGATATTAAATCCAGAAGAGCACTG | + |
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Preference number: 3 (lower is better) Translates to: SLLNQLCHSVLR*GLKDIKSRRAL Trigger: CAGTGCTCTTCTGGATTTAATATCTTTGAGACCTCATCTGAGTACAGAGTGGCATAATTGATTTAACAGAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR GCA 90 bp | CTTGGGCTCACTAACTCACAGGATAAGTCTGAGGCGATAGTAGACCTGCTTTGCAGCACCTTTTCCATTTaGTCAGCACTCTTTCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: LGLTNSQDKSEAIVDLLCSTFSI*SALFPL Trigger: CAGGGGAAAGAGTGCTGAGCAAATGGAAAAGGTGCT...GCAAAGCAGGTCTACTATCGCCTCAGACTTATCCTGTGAGTTAGTGAGCCCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR TCA 90 bp | CTTGGGCTCACTAACTCACAGGATAAGTCTGAGGCGATAGTAGACCTGCTTTGCCTACAGGAAGCAGGATaGTCATTCTTAGTTTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: LGLTNSQDKSEAIVDLLCLQEAG*SFLVCC Trigger: ACAACAAACTAAGAATGATCATCCTGCTTCCTGTAG...GCAAAGCAGGTCTACTATCGCCTCAGACTTATCCTGTGAGTTAGTGAGCCCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| 3UTR CAA 72 bp | GGTATAAATGGATCTTCTAACACAGCTGCTAGAGTCTaGGGCTCACTAACTCACAGGATAAGTCTGAGGCGA | + |
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Preference number: 4 (lower is better) Translates to: GINGSSNTAARV*GSLTHRISLRR Trigger: TCGCCTCAGACTTATCCTGTGAGTTAGTGAGCCCAAGACTCTAGCAGCTGTGTTAGAAGATCCATTTATACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR TCA 90 bp | GCCACTCTGTACTCAGATGAGGTCTCAAAGATATTAAATCCAGAAGAGCACTGGTTTGCCATTGTCCCTTaGAATATATGGCACTCACTA | + |
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Preference number: 4 (lower is better) Translates to: ATLYSDEVSKILNPEEHWFAIVP*NIWHSL Trigger: TAGTGAGTGCCATATATTTCAAGGGACAATGGCAAA...CCAGTGCTCTTCTGGATTTAATATCTTTGAGACCTCATCTGAGTACAGAGTGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR GCA 90 bp | CCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACCTGCTCTGAAATCAGGATaGATCACTCCAACTTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: PRSLIHNLTHRKTKHIKPALKSG*ITPTWL Trigger: CAGCCAAGTTGGAGTGATGCATCCTGATTTCAGAGC...AGGTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR GCA 90 bp | ACCCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACGGAAGCTCAAGGACTTaGATCTCTGGCTCCTTTATG | + |
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Preference number: 4 (lower is better) Translates to: TLDHSFTISLIEKPNISNGSSRT*ISGSFM Trigger: CATAAAGGAGCCAGAGATGCAAGTCCTTGAGCTTCC...GTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR CCA 90 bp | ACCCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACAAGGACTTGCATCTCTaGCTCCTTTATGATAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: TLDHSFTISLIEKPNISNKDLHL*LLYDSQ Trigger: CTGGCTATCATAAAGGAGCCAGAGATGCAAGTCCTT...GTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR TCA 90 bp | ACCCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACCTGTGCCTTCTTCATTaGCATCCACATATGACTTGT | + |
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Preference number: 4 (lower is better) Translates to: TLDHSFTISLIEKPNISNLCLLH*HPHMTC Trigger: ACAAGTCATATGTGGATGTCAATGAAGAAGGCACAG...GTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGGGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR TCA 90 bp | ACCCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACATTGACATCCACATATaGCTTGTGAACAACCTTAGA | + |
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Preference number: 4 (lower is better) Translates to: TLDHSFTISLIEKPNISNIDIHI*LVNNLR Trigger: TCTAAGGTTGTTCACAAGTCATATGTGGATGTCAAT...GTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGGGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR GCA 90 bp | CCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACCTATGGAGAAGCAAACTTaGCAGCAAATAAAATATTGC | + |
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Preference number: 4 (lower is better) Translates to: PRSLIHNLTHRKTKHIKPMEKQT*QQIKYC Trigger: GCAATATTTTATTTGCTGGCAAGTTTGCTTCTCCAT...AGGTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR CAA 90 bp | CTGAGATGCAAAGGTTCAGCCCCTTCGCCCCTGTACTTCTTAGCTATCTCTGAGGATAAATATAGGCCCTaGTCCGGTGACATTCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: LRCKGSAPSPLYFLAISEDKYRP*SGDIPE Trigger: CTCTGGAATGTCACCGGACAAGGGCCTATATTTATC...CTCAGAGATAGCTAAGAAGTACAGGGGCGAAGGGGCTGAACCTTTGCATCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS TCA 90 bp | GTTTTTCTATCTGGCTCACGCTGGCTGTGCCTACAGGAAGCAGGATaGTCATTCTTAGTTTGTTGTTGGCATAGGGAAGCTCAAGGACTT | + |
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Preference number: 5 (lower is better) Translates to: VFLSGSRWLCLQEAG*SFLVCCWHREAQGL Trigger: AAGTCCTTGAGCTTCCCTATGCCAACAACAAACTAAGAATGATCATCCTGCTTCCTGTAGGCACAGCCAGCGTGAGCCAGATAGAAAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR CAA 90 bp | CTGAGATGCAAAGGTTCAGCCCCTTCGCCCCTGTACTTCTTAGCTATCTCTGAGTTTTGCCATTGTCCCTaGAAATATATGGCACTCACT | + |
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Preference number: 5 (lower is better) Translates to: LRCKGSAPSPLYFLAISEFCHCP*KYMALT Trigger: AGTGAGTGCCATATATTTCAAGGGACAATGGCAAAA...CTCAGAGATAGCTAAGAAGTACAGGGGCGAAGGGGCTGAACCTTTGCATCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR CAA 90 bp | CTGAGATGCAAAGGTTCAGCCCCTTCGCCCCTGTACTTCTTAGCTATCTCTGAGCCAGCAAATAAAATATaGCCAGACTCATCCCAGATA | + |
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Preference number: 5 (lower is better) Translates to: LRCKGSAPSPLYFLAISEPANKI*PDSSQI Trigger: TATCTGGGATGAGTCTGGCAATATTTTATTTGCTGG...CTCAGAGATAGCTAAGAAGTACAGGGGCGAAGGGGCTGAACCTTTGCATCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS GCA 90 bp | GATAGCCAGCTTAAATGTTCCAGTCTGATACATCATATTCACAACTaGACTTTTACCCACACCCATGTGAAAGGGGGCTTTCACTGTCTC | + |
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Preference number: 5 (lower is better) Translates to: DSQLKCSSLIHHIHN*TFTHTHVKGGFHCL Trigger: GAGACAGTGAAAGCCCCCTTTCACATGGGTGTGGGTAAAAGTGCAGTTGTGAATATGATGTATCAGACTGGAACATTTAAGCTGGCTATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR CAA 90 bp | GCCACTCTGTACTCAGATGAGGTCTCAAAGATATTAAATCCAGAAGAGCACTGGTTCAAAATCAACAGTTaGCAGCTTGGCTTGGTACAG | + |
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Preference number: 5 (lower is better) Translates to: ATLYSDEVSKILNPEEHWFKINS*QLGLVQ Trigger: CTGTACCAAGCCAAGCTGCAAACTGTTGATTTTGAA...CCAGTGCTCTTCTGGATTTAATATCTTTGAGACCTCATCTGAGTACAGAGTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS TCA 90 bp | AGGGTGTTTAGGTCGTATTTTACTGAAAGACTGAATTTAGGGATGTaGACATCCACTTCTCTTTCCACCATGTTAGAAGGGTTAGTCCAC | + |
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Preference number: 5 (lower is better) Translates to: RVFRSYFTERLNLGM*TSTSLSTMLEGLVH Trigger: GTGGACTAACCCTTCTAACATGGTGGAAAGAGAAGTGGATGTTCACATCCCTAAATTCAGTCTTTCAGTAAAATACGACCTAAACACCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR CAA 90 bp | ACCCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACGCTGAGGGAGTTCTGTaGGTTAATGTGGGAAATCAG | + |
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Preference number: 5 (lower is better) Translates to: TLDHSFTISLIEKPNISNAEGVL*VNVGNQ Trigger: CTGATTTCCCACATTAACCAACAGAACTCCCTCAGC...GTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR CAA 90 bp | ACCCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACATGTTTTCTCCCACGTaGTTACTGCTCAGCTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: TLDHSFTISLIEKPNISNMFSPT*LLLSSL Trigger: CAAAGAGCTGAGCAGTAACAACGTGGGAGAAAACAT...GTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR CAA 90 bp | CCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACCTATGCATCACTCCAACTaGGCTGCACTCAGAAGAATT | + |
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Preference number: 5 (lower is better) Translates to: PRSLIHNLTHRKTKHIKPMHHSN*AALRRI Trigger: AATTCTTCTGAGTGCAGCCAAGTTGGAGTGATGCAT...AGGTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR CAA 90 bp | CCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACCTTTACTGCTCAGCTCTTaGAACACATCAAGGCAAAAT | + |
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Preference number: 5 (lower is better) Translates to: PRSLIHNLTHRKTKHIKPLLLSS*NTSRQN Trigger: ATTTTGCCTTGATGTGTTCAAAGAGCTGAGCAGTAA...AGGTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS-3UTR CAA 90 bp | CCTAGATCACTCATTCACAATCTCACTCATAGAAAAACCAAACATATCAAACCTCATCTTACATATTGCTaGTGGAATGATATTGACCTC | + |
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Preference number: 5 (lower is better) Translates to: PRSLIHNLTHRKTKHIKPHLTYC*WNDIDL Trigger: GAGGTCAATATCATTCCACAAGCAATATGTAAGATG...AGGTTTGATATGTTTGGTTTTTCTATGAGTGAGATTGTGAATGAGTGATCTAGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS CAA 72 bp | AGGCCCTTGTCCGGTGACATTCCAGAGAGATCAGCATaGGCTACGTTGAAGATGTCCCTCATGCCTAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: RPLSGDIPERSA*ATLKMSLMPRD Trigger: ATCCCTAGGCATGAGGGACATCTTCAACGTAGCCAATGCTGATCTCTCTGGAATGTCACCGGACAAGGGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS CCA 72 bp | TCTCGAAGCATCTTCACATTCAGGTGTTTTTCTATCTaGCTCACGCTGGCTGTGCCTACAGGAAGCAGGATG | + |
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Preference number: 6 (lower is better) Translates to: SRSIFTFRCFSI*LTLAVPTGSRM Trigger: CATCCTGCTTCCTGTAGGCACAGCCAGCGTGAGCCAGATAGAAAAACACCTGAATGTGAAGATGCTTCGAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS CAA 72 bp | CCCGTAGATTCTGTTAGCAACGCTGAGGGAGTTCTGTaGGTTAATGTGGGAAATCAGGGCTCTGAAATCAGG | + |
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Preference number: 6 (lower is better) Translates to: PVDSVSNAEGVL*VNVGNQGSEIR Trigger: CCTGATTTCAGAGCCCTGATTTCCCACATTAACCAACAGAACTCCCTCAGCGTTGCTAACAGAATCTACGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027566.3 ENSMUST00000191425.7 |
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| CDS CAA 90 bp | GATAAATATAGGCCCTTGTCCGGTGACATTCCAGAGAGATCAGCATaGGCTACGTTGAAGATGTCCCTCATGCCTAGGGATTTCAATAGG | + |
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Preference number: 6 (lower is better) Translates to: DKYRPLSGDIPERSA*ATLKMSLMPRDFNR Trigger: CCTATTGAAATCCCTAGGCATGAGGGACATCTTCAACGTAGCCAATGCTGATCTCTCTGGAATGTCACCGGACAAGGGCCTATATTTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS TCA 72 bp | AGATGTTTTCTCCCACGTTGTTACTGCTCAGCTCTTTaGACACATCAAGGCAAAATTCAGTACTCGCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: RCFLPRCYCSAL*THQGKIQYSLW Trigger: CCACAGCGAGTACTGAATTTTGCCTTGATGTGTTCAAAGAGCTGAGCAGTAACAACGTGGGAGAAAACATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027566.3 ENSMUST00000191425.7 |
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| CDS GCA 72 bp | TGGTTAATGTGGGAAATCAGGGCTCTGAAATCAGGATaGATCACTCCAACTTGGCTGCACTCAGAAGAATTT | + |
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Preference number: 6 (lower is better) Translates to: WLMWEIRALKSG*ITPTWLHSEEF Trigger: AAATTCTTCTGAGTGCAGCCAAGTTGGAGTGATGCATCCTGATTTCAGAGCCCTGATTTCCCACATTAACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027566.3 ENSMUST00000191425.7 |
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| CDS CAA 72 bp | GTAGTCAGCGGAGAAAAGAAGATGTTTTCTCCCACGTaGTTACTGCTCAGCTCTTTGAACACATCAAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: VVSGEKKMFSPT*LLLSSLNTSRQ Trigger: TTGCCTTGATGTGTTCAAAGAGCTGAGCAGTAACAACGTGGGAGAAAACATCTTCTTTTCTCCGCTGACTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027566.3 ENSMUST00000191425.7 |
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| CDS CCA 72 bp | ATCAGGGCTCTGAAATCAGGATGCATCACTCCAACTTaGCTGCACTCAGAAGAATTTTTCGTCTTTGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: IRALKSGCITPT*LHSEEFFVFAF Trigger: AAAAGCAAAGACGAAAAATTCTTCTGAGTGCAGCCAAGTTGGAGTGATGCATCCTGATTTCAGAGCCCTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027566.3 ENSMUST00000191425.7 |
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| CDS CAA 72 bp | AAGATGTTTTCTCCCACGTTGTTACTGCTCAGCTCTTaGAACACATCAAGGCAAAATTCAGTACTCGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: KMFSPTLLLLSS*NTSRQNSVLAV Trigger: CACAGCGAGTACTGAATTTTGCCTTGATGTGTTCAAAGAGCTGAGCAGTAACAACGTGGGAGAAAACATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027566.3 ENSMUST00000191425.7 |
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| CDS CAA 72 bp | AATCAGGGCTCTGAAATCAGGATGCATCACTCCAACTaGGCTGCACTCAGAAGAATTTTTCGTCTTTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: NQGSEIRMHHSN*AALRRIFRLCF Trigger: AAAGCAAAGACGAAAAATTCTTCTGAGTGCAGCCAAGTTGGAGTGATGCATCCTGATTTCAGAGCCCTGATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027566.3 ENSMUST00000191425.7 |
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| CDS GCA 72 bp | CTTAAATGTTCCAGTCTGATACATCATATTCACAACTaGACTTTTACCCACACCCATGTGAAAGGGGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: LKCSSLIHHIHN*TFTHTHVKGGF Trigger: AAAGCCCCCTTTCACATGGGTGTGGGTAAAAGTGCAGTTGTGAATATGATGTATCAGACTGGAACATTTAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS TCA 72 bp | GGCTCCTTTATGATAGCCAGCTTAAATGTTCCAGTCTaGTACATCATATTCACAACTGCACTTTTACCCACA | + |
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Preference number: 6 (lower is better) Translates to: GSFMIASLNVPV*YIIFTTALLPT Trigger: TGTGGGTAAAAGTGCAGTTGTGAATATGATGTATCAGACTGGAACATTTAAGCTGGCTATCATAAAGGAGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS TCA 72 bp | AGGTCGTATTTTACTGAAAGACTGAATTTAGGGATGTaGACATCCACTTCTCTTTCCACCATGTTAGAAGGG | + |
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Preference number: 6 (lower is better) Translates to: RSYFTERLNLGM*TSTSLSTMLEG Trigger: CCCTTCTAACATGGTGGAAAGAGAAGTGGATGTTCACATCCCTAAATTCAGTCTTTCAGTAAAATACGACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027566.3 |
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| CDS CCA 72 bp | GTAGATAGTTCAAAATCAACAGTTTGCAGCTTGGCTTaGTACAGTTTCTCACAACATCTTACATATTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: VDSSKSTVCSLA*YSFSQHLTYCL Trigger: CAAGCAATATGTAAGATGTTGTGAGAAACTGTACCAAGCCAAGCTGCAAACTGTTGATTTTGAACTATCTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027566.3 ENSMUST00000191425.7 |
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