RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SERPINA6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060807

Ensembl transcript IDs: ENSMUST00000044159.7, ENSMUST00000152517.2

Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCGCTCTCAAAGTCAGATaGCACCATGGTTTTCCGGGA +
Preference number: 2 (lower is better)
Translates to: SFSVVPSRLICFESSNKAALKVR*HHGFPG
Trigger: TCCCGGAAAACCATGGTGCCATCTGACTTTGAGAGC...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
3UTR-3UTR CCA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCGACCCTGAAGAAGACTaGGGAAAGACTTCTATGCTC +
Preference number: 2 (lower is better)
Translates to: SFSVVPSRLICFESSNKADPEED*GKTSML
Trigger: GAGCATAGAAGTCTTTCCCCAGTCTTCTTCAGGGTC...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
3UTR-3UTR GCA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCGGGGAAAGACTTCTATaGTCTCAAAGTCAGATGGCA +
Preference number: 2 (lower is better)
Translates to: SFSVVPSRLICFESSNKAGERLL*SQSQMA
Trigger: TGCCATCTGACTTTGAGAGCATAGAAGTCTTTCCCC...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR GCA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCGGGTGGAGCCCCTGGTaGTTAGGGACAGCATGGCCA +
Preference number: 4 (lower is better)
Translates to: SFSVVPSRLICFESSNKAGWSPW*LGTAWP
Trigger: TGGCCATGCTGTCCCTAAGCACCAGGGGCTCCACCC...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp CTGAAGAAGACTGGGGAAAGACTTCTATGCTCTCAAAGTCAGATGGCACCATGGTCATCAGTGACAGCCTaGGTGGTCCAGAGGCCACTG +
Preference number: 4 (lower is better)
Translates to: LKKTGERLLCSQSQMAPWSSVTA*VVQRPL
Trigger: CAGTGGCCTCTGGACCACCCAGGCTGTCACTGATGA...CCATGGTGCCATCTGACTTTGAGAGCATAGAAGTCTTTCCCCAGTCTTCTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp CTGAAGAAGACTGGGGAAAGACTTCTATGCTCTCAAAGTCAGATGGCACCATGGAGGTTCTCGAGATACTaGGTGGAGCCCCTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: LKKTGERLLCSQSQMAPWRFSRY*VEPLVL
Trigger: AAGCACCAGGGGCTCCACCCAGTATCTCGAGAACCT...CCATGGTGCCATCTGACTTTGAGAGCATAGAAGTCTTTCCCCAGTCTTCTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp CTGAAGAAGACTGGGGAAAGACTTCTATGCTCTCAAAGTCAGATGGCACCATGGCTGACTGGACCATCATaGGCACCTTCACTGTGCTTG +
Preference number: 4 (lower is better)
Translates to: LKKTGERLLCSQSQMAPWLTGPS*APSLCL
Trigger: CAAGCACAGTGAAGGTGCCCATGATGGTCCAGTCAG...CCATGGTGCCATCTGACTTTGAGAGCATAGAAGTCTTTCCCCAGTCTTCTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR TCA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCGTCTCGGTGAGAACTTaGATCCTCATCAGTGACAGC +
Preference number: 4 (lower is better)
Translates to: SFSVVPSRLICFESSNKAVSVRT*ILISDS
Trigger: GCTGTCACTGATGAGGATTCAAGTTCTCACCGAGAC...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp CCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTACTGGGTGGAGCCCCTaGTGCTTAGGGACAGCATGG +
Preference number: 4 (lower is better)
Translates to: PLITVTSFSVVPSRLICFTGWSP*CLGTAW
Trigger: CCATGCTGTCCCTAAGCACCAGGGGCTCCACCCAGT...AAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCAGGTACTGGAAACCCTaGTGGATCTCAGCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: SFSVVPSRLICFESSNKARYWKP*WISASD
Trigger: GTCTGAAGCTGAGATCCACCAGGGTTTCCAGTACCT...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCGTGTCCATCTGGCCCTaGTCTGGAAGAATGATGAAG +
Preference number: 4 (lower is better)
Translates to: SFSVVPSRLICFESSNKAVSIWP*SGRMMK
Trigger: CTTCATCATTCTTCCAGACCAGGGCCAGATGGACAC...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp ACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGACGACAGTGTCCATCTaGCCCTGGTCTGGAAGAATG +
Preference number: 4 (lower is better)
Translates to: TSFSVVPSRLICFESSNKTTVSI*PWSGRM
Trigger: CATTCTTCCAGACCAGGGCCAGATGGACACTGTCGT...CTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR GCA 90 bp ACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGAAGCCAGTGTCAGACTaGTGGAGAAGGGAATTGAGG +
Preference number: 4 (lower is better)
Translates to: TSFSVVPSRLICFESSNKKPVSD*WRRELR
Trigger: CCTCAATTCCCTTCTCCAGCAGTCTGACACTGGCTT...CTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp CCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTTGGTCCAGAGGCCACTaGTGCAGAGCCAGAAGAGAC +
Preference number: 4 (lower is better)
Translates to: PLITVTSFSVVPSRLICFWSRGH*CRARRD
Trigger: GTCTCTTCTGGCTCTGCACCAGTGGCCTCTGGACCA...AAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp ACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGCCAGTGTCAGACTGCTaGAGAAGGGAATTGAGGTAC +
Preference number: 4 (lower is better)
Translates to: TSFSVVPSRLICFESSNKPVSDC*RRELRY
Trigger: GTACCTCAATTCCCTTCTCCAGCAGTCTGACACTGG...CTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp ACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGTTCATCTGTACCATCTaGCAGGGGATCGCCGAATCA +
Preference number: 4 (lower is better)
Translates to: TSFSVVPSRLICFESSNKFICTI*QGIAES
Trigger: TGATTCGGCGATCCCCTGCCAGATGGTACAGATGAA...CTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCCATCTGGCCCTGGTCTaGAAGAATGATGAAGGTAGT +
Preference number: 4 (lower is better)
Translates to: SFSVVPSRLICFESSNKAHLALV*KNDEGS
Trigger: ACTACCTTCATCATTCTTCCAGACCAGGGCCAGATG...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCTCAAGGGAGTGTCTTTaGTGGTGTCTGCGAAATCAG +
Preference number: 4 (lower is better)
Translates to: SFSVVPSRLICFESSNKASRECL*WCLRNQ
Trigger: CTGATTTCGCAGACACCACCAAAGACACTCCCTTGA...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp ACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGAGGGAATTGAGGTACTaGAAACCCTGGTGGATCTCA +
Preference number: 4 (lower is better)
Translates to: TSFSVVPSRLICFESSNKRELRY*KPWWIS
Trigger: TGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCT...CTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR TCA 90 bp CCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTTTGAATCCTCATCAGTaGCAGCCTGGGTGGTCCAGA +
Preference number: 4 (lower is better)
Translates to: PLITVTSFSVVPSRLICFLNPHQ*QPGWSR
Trigger: TCTGGACCACCCAGGCTGTCACTGATGAGGATTCAA...AAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGG
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp TTGCAAAAACATCCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGACTAATGTTGCCTGACTaGACCATCATGGGCACCTTC +
Preference number: 4 (lower is better)
Translates to: LQKHPLITVTSFSVVPSRLMLPD*TIMGTF
Trigger: GAAGGTGCCCATGATGGTCCAGTCAGGCAACATTAG...TCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGGATGTTTTTGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp TTGCAAAAACATCCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGATACTGGAAACCCTGGTaGATCTCAGCTTCAGACATC +
Preference number: 4 (lower is better)
Translates to: LQKHPLITVTSFSVVPSRYWKPW*ISASDI
Trigger: GATGTCTGAAGCTGAGATCCACCAGGGTTTCCAGTA...TCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGGATGTTTTTGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp ACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGCTCTCTAGTATTTTCTaGGCTGAAGGGAAGTTTCCA +
Preference number: 4 (lower is better)
Translates to: TSFSVVPSRLICFESSNKLSSIF*AEGKFP
Trigger: TGGAAACTTCCCTTCAGCCCAGAAAATACTAGAGAG...CTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp ACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGCAGACATGGAGAATTTaGGGATGTACAGGTTCATCT +
Preference number: 4 (lower is better)
Translates to: TSFSVVPSRLICFESSNKQTWRI*GCTGSS
Trigger: AGATGAACCTGTACATCCCCAAATTCTCCATGTCTG...CTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCCATAGGTATCAGACATaGAGAATTTGGGGATGTACA +
Preference number: 4 (lower is better)
Translates to: SFSVVPSRLICFESSNKAHRYQT*RIWGCT
Trigger: TGTACATCCCCAAATTCTCCATGTCTGATACCTATG...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR TCA 90 bp TTGCAAAAACATCCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGAAGCTTCAGACATCTTTaGCATGTTGAAGCCCAGGTT +
Preference number: 4 (lower is better)
Translates to: LQKHPLITVTSFSVVPSRSFRHL*HVEAQV
Trigger: AACCTGGGCTTCAACATGTCAAAGATGTCTGAAGCT...TCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGGATGTTTTTGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR TCA 90 bp CCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTTCTGGAGGAGGAACATaGCATTGCCCATGTTCATCT +
Preference number: 4 (lower is better)
Translates to: PLITVTSFSVVPSRLICFSGGGT*HCPCSS
Trigger: AGATGAACATGGGCAATGTCATGTTCCTCCTCCAGA...AAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp CTGAAGAAGACTGGGGAAAGACTTCTATGCTCTCAAAGTCAGATGGCACCATGGTCTGCGAAATCAGATTaGTTGGTGAACAAATCCTTA +
Preference number: 4 (lower is better)
Translates to: LKKTGERLLCSQSQMAPWSAKSD*LVNKSL
Trigger: TAAGGATTTGTTCACCAACCAATCTGATTTCGCAGA...CCATGGTGCCATCTGACTTTGAGAGCATAGAAGTCTTTCCCCAGTCTTCTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
3UTR CAA 72 bp ATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGATaGATTTGTTTTGAGAGTAGCAACAAGGCCTATTCA +
Preference number: 4 (lower is better)
Translates to: ITVTSFSVVPSR*ICFESSNKAYS
Trigger: TGAATAGGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CCA 90 bp TTGCAAAAACATCCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGAACTCATAATAGTGTTTaGTGTCTGCTAAGAATGAGT +
Preference number: 4 (lower is better)
Translates to: LQKHPLITVTSFSVVPSRTHNSV*CLLRMS
Trigger: ACTCATTCTTAGCAGACACCAAACACTATTATGAGT...TCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGGATGTTTTTGCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 90 bp CATTGGTGGGAGCCAGGTCTCGGTGAGAACTTGAATCCTCATCAGTaGCAGCCTGGGTGGTCCAGAGGCCACTGGTGCAGAGCCAGAAGA +
Preference number: 5 (lower is better)
Translates to: HWWEPGLGENLNPHQ*QPGWSRGHWCRARR
Trigger: TCTTCTGGCTCTGCACCAGTGGCCTCTGGACCACCCAGGCTGTCACTGATGAGGATTCAAGTTCTCACCGAGACCTGGCTCCCACCAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044159.7
ENSMUST00000152517.2
CDS CCA 90 bp GCTTCAGACATCTTTGACATGTTGAAGCCCAGGTTCTCGAGATACTaGGTGGAGCCCCTGGTGCTTAGGGACAGCATGGCCAGGGCCATG +
Preference number: 5 (lower is better)
Translates to: ASDIFDMLKPRFSRY*VEPLVLRDSMARAM
Trigger: CATGGCCCTGGCCATGCTGTCCCTAAGCACCAGGGGCTCCACCCAGTATCTCGAGAACCTGGGCTTCAACATGTCAAAGATGTCTGAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 90 bp TACAAGTTGAAGGCAAAGTCAACATTGGTGGGAGCCAGGTCTCGGTaGGAACTTGAATCCTCATCAGTGACAGCCTGGGTGGTCCAGAGG +
Preference number: 5 (lower is better)
Translates to: YKLKAKSTLVGARSR*ELESSSVTAWVVQR
Trigger: CCTCTGGACCACCCAGGCTGTCACTGATGAGGATTCAAGTTCTCACCGAGACCTGGCTCCCACCAATGTTGACTTTGCCTTCAACTTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 90 bp ACTGGAAACCCTGGTGGATCTCAGCTTCAGACATCTTTGACATGTTaGAGCCCAGGTTCTCGAGATACTGGGTGGAGCCCCTGGTGCTTA +
Preference number: 5 (lower is better)
Translates to: TGNPGGSQLQTSLTC*SPGSRDTGWSPWCL
Trigger: TAAGCACCAGGGGCTCCACCCAGTATCTCGAGAACCTGGGCTTCAACATGTCAAAGATGTCTGAAGCTGAGATCCACCAGGGTTTCCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp ACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGTGTACAGGAGGGCCATaGGTGGCAGCAGGCAGCACA +
Preference number: 5 (lower is better)
Translates to: TSFSVVPSRLICFESSNKCTGGP*VAAGST
Trigger: TGTGCTGCCTGCTGCCACCAATGGCCCTCCTGTACA...CTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 90 bp CATCTGGCAGGGGATCGCCGAATCACGAAAGTAACTAATGTTGCCTaGCTGGACCATCATGGGCACCTTCACTGTGCTTGTCTCATTCAC +
Preference number: 5 (lower is better)
Translates to: HLAGDRRITKVTNVA*LDHHGHLHCACLIH
Trigger: GTGAATGAGACAAGCACAGTGAAGGTGCCCATGATGGTCCAGTCAGGCAACATTAGTTACTTTCGTGATTCGGCGATCCCCTGCCAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 90 bp CCATGTTCATCTCCAAGCCAGTGTCAGACTGCTGGAGAAGGGAATTaGGGTACTGGAAACCCTGGTGGATCTCAGCTTCAGACATCTTTG +
Preference number: 5 (lower is better)
Translates to: PCSSPSQCQTAGEGN*GTGNPGGSQLQTSL
Trigger: CAAAGATGTCTGAAGCTGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCAGTCTGACACTGGCTTGGAGATGAACATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS GCA 90 bp AGGAACATGACATTGCCCATGTTCATCTCCAAGCCAGTGTCAGACTaGTGGAGAAGGGAATTGAGGTACTGGAAACCCTGGTGGATCTCA +
Preference number: 5 (lower is better)
Translates to: RNMTLPMFISKPVSD*WRRELRYWKPWWIS
Trigger: TGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCAGTCTGACACTGGCTTGGAGATGAACATGGGCAATGTCATGTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 90 bp GTGTCAGACTGCTGGAGAAGGGAATTGAGGTACTGGAAACCCTGGTaGATCTCAGCTTCAGACATCTTTGACATGTTGAAGCCCAGGTTC +
Preference number: 5 (lower is better)
Translates to: VSDCWRRELRYWKPW*ISASDIFDMLKPRF
Trigger: GAACCTGGGCTTCAACATGTCAAAGATGTCTGAAGCTGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCAGTCTGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 90 bp AACATGACATTGCCCATGTTCATCTCCAAGCCAGTGTCAGACTGCTaGAGAAGGGAATTGAGGTACTGGAAACCCTGGTGGATCTCAGCT +
Preference number: 5 (lower is better)
Translates to: NMTLPMFISKPVSDC*RRELRYWKPWWISA
Trigger: AGCTGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCAGTCTGACACTGGCTTGGAGATGAACATGGGCAATGTCATGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp CTGAAGAAGACTGGGGAAAGACTTCTATGCTCTCAAAGTCAGATGGCACCATGGTGCTGGAGAAGGGAATaGAGGTACTGGAAACCCTGG +
Preference number: 5 (lower is better)
Translates to: LKKTGERLLCSQSQMAPWCWRRE*RYWKPW
Trigger: CCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCA...CCATGGTGCCATCTGACTTTGAGAGCATAGAAGTCTTTCCCCAGTCTTCTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 90 bp AGGTATTCTTGTCAGAATTCAGGGCCACTAGGCGTTTGTACAAGTTaGAGGCAAAGTCAACATTGGTGGGAGCCAGGTCTCGGTGAGAAC +
Preference number: 5 (lower is better)
Translates to: RYSCQNSGPLGVCTS*RQSQHWWEPGLGEN
Trigger: GTTCTCACCGAGACCTGGCTCCCACCAATGTTGACTTTGCCTTCAACTTGTACAAACGCCTAGTGGCCCTGAATTCTGACAAGAATACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 90 bp ATCTCCAAGCCAGTGTCAGACTGCTGGAGAAGGGAATTGAGGTACTaGAAACCCTGGTGGATCTCAGCTTCAGACATCTTTGACATGTTG +
Preference number: 5 (lower is better)
Translates to: ISKPVSDCWRRELRY*KPWWISASDIFDML
Trigger: CAACATGTCAAAGATGTCTGAAGCTGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCAGTCTGACACTGGCTTGGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 90 bp GTCCCGATTAAGTGCAGCGACGACAGTGTCCATCTGGCCCTGGTCTaGAAGAATGATGAAGGTAGTTCCATTTCCCACATAATTCATCTG +
Preference number: 5 (lower is better)
Translates to: VPIKCSDDSVHLALV*KNDEGSSISHIIHL
Trigger: CAGATGAATTATGTGGGAAATGGAACTACCTTCATCATTCTTCCAGACCAGGGCCAGATGGACACTGTCGTCGCTGCACTTAATCGGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp CTGAAGAAGACTGGGGAAAGACTTCTATGCTCTCAAAGTCAGATGGCACCATGGGTCAAGGGAGTGTCTTaGGTGGTGTCTGCGAAATCA +
Preference number: 5 (lower is better)
Translates to: LKKTGERLLCSQSQMAPWVKGVS*VVSAKS
Trigger: TGATTTCGCAGACACCACCAAAGACACTCCCTTGAC...CCATGGTGCCATCTGACTTTGAGAGCATAGAAGTCTTTCCCCAGTCTTCTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp ACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGATTCCCTTCATCCAGTaGCAGCATGGCCTTGTGGAG +
Preference number: 5 (lower is better)
Translates to: TSFSVVPSRLICFESSNKIPFIQ*QHGLVE
Trigger: CTCCACAAGGCCATGCTGCAACTGGATGAAGGGAAT...CTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp CTGAAGAAGACTGGGGAAAGACTTCTATGCTCTCAAAGTCAGATGGCACCATGGCTGCTCCATGTGTACTaGTCAAAGGCCAGGAAGATG +
Preference number: 5 (lower is better)
Translates to: LKKTGERLLCSQSQMAPWLLHVY*SKARKM
Trigger: CATCTTCCTGGCCTTTGACAAGTACACATGGAGCAG...CCATGGTGCCATCTGACTTTGAGAGCATAGAAGTCTTTCCCCAGTCTTCTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 90 bp CTGCTAAGAATGAGTCTTTCAGCTTTAGGTTCTGGAGGAGGAACATaGCATTGCCCATGTTCATCTCCAAGCCAGTGTCAGACTGCTGGA +
Preference number: 5 (lower is better)
Translates to: LLRMSLSALGSGGGT*HCPCSSPSQCQTAG
Trigger: TCCAGCAGTCTGACACTGGCTTGGAGATGAACATGGGCAATGTCATGTTCCTCCTCCAGAACCTAAAGCTGAAAGACTCATTCTTAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp ACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGAGTTGCAGCATGGCCTaGTGGAGTACCGTTAATGTC +
Preference number: 5 (lower is better)
Translates to: TSFSVVPSRLICFESSNKSCSMA*WSTVNV
Trigger: GACATTAACGGTACTCCACAAGGCCATGCTGCAACT...CTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp CCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTAAGGCAAAGTCAACATaGGTGGGAGCCAGGTCTCGG +
Preference number: 5 (lower is better)
Translates to: PLITVTSFSVVPSRLICFKAKST*VGARSR
Trigger: CCGAGACCTGGCTCCCACCAATGTTGACTTTGCCTT...AAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp CCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGCTTTAGTCCAGTCCTaGGAAGGGATGGTCAAGGCC +
Preference number: 5 (lower is better)
Translates to: PLITVTSFSVVPSRLICFALVQS*EGMVKA
Trigger: GGCCTTGACCATCCCTTCCAAGGACTGGACTAAAGC...AAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 90 bp AGTCCTTGGAAGGGATGGTCAAGGCCTCTGACTCATAATAGTGTTTaGTGTCTGCTAAGAATGAGTCTTTCAGCTTTAGGTTCTGGAGGA +
Preference number: 5 (lower is better)
Translates to: SPWKGWSRPLTHNSV*CLLRMSLSALGSGG
Trigger: TCCTCCAGAACCTAAAGCTGAAAGACTCATTCTTAGCAGACACCAAACACTATTATGAGTCAGAGGCCTTGACCATCCCTTCCAAGGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 90 bp GGTATCAGACATGGAGAATTTGGGGATGTACAGGTTCATCTGCCTTaGAATCATAAGCTTGCCCCACCTATCAATTGTGTCCCGATTAAG +
Preference number: 5 (lower is better)
Translates to: GIRHGEFGDVQVHLP*NHKLAPPINCVPIK
Trigger: CTTAATCGGGACACAATTGATAGGTGGGGCAAGCTTATGATTCCAAGGCAGATGAACCTGTACATCCCCAAATTCTCCATGTCTGATACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 90 bp GTTAATGTCAAGGGAGTGTCTTTGGTGGTGTCTGCGAAATCAGATTaGTTGGTGAACAAATCCTTAATGCCCACATCTGCCAGCACATCT +
Preference number: 5 (lower is better)
Translates to: VNVKGVSLVVSAKSD*LVNKSLMPTSASTS
Trigger: AGATGTGCTGGCAGATGTGGGCATTAAGGATTTGTTCACCAACCAATCTGATTTCGCAGACACCACCAAAGACACTCCCTTGACATTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp TCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTGAGAGTAGCAACAAGGCCGAGATTAAGGTATTCTaGTCAGAATTCAGGGCCACT +
Preference number: 5 (lower is better)
Translates to: SFSVVPSRLICFESSNKAEIKVF*SEFRAT
Trigger: AGTGGCCCTGAATTCTGACAAGAATACCTTAATCTC...GGCCTTGTTGCTACTCTCAAAACAAATCAATCGGGAGGGGACCACTGAGAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp CCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGATTGATTTGTTTTAGGGCCACTAGGCGTTaGTACAAGTTGAAGGCAAAG +
Preference number: 5 (lower is better)
Translates to: PLITVTSFSVVPSRLICFRATRR*YKLKAK
Trigger: CTTTGCCTTCAACTTGTACAAACGCCTAGTGGCCCT...AAAACAAATCAATCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS-3UTR CAA 90 bp TTGCAAAAACATCCTTTAATAACTGTTACCTCTTTCTCAGTGGTCCCCTCCCGAGACATCTTTGACATGTaGAAGCCCAGGTTCTCGAGA +
Preference number: 5 (lower is better)
Translates to: LQKHPLITVTSFSVVPSRDIFDM*KPRFSR
Trigger: TCTCGAGAACCTGGGCTTCAACATGTCAAAGATGTC...TCGGGAGGGGACCACTGAGAAAGAGGTAACAGTTATTAAAGGATGTTTTTGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS GCA 90 bp TGCGAAATCAGATTGGTTGGTGAACAAATCCTTAATGCCCACATCTaGCAGCACATCTTGAAGGTCATAGGTATCAGACATGGAGAATTT +
Preference number: 5 (lower is better)
Translates to: CEIRLVGEQILNAHI*QHILKVIGIRHGEF
Trigger: AAATTCTCCATGTCTGATACCTATGACCTTCAAGATGTGCTGGCAGATGTGGGCATTAAGGATTTGTTCACCAACCAATCTGATTTCGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CAA 90 bp TACTTGAGGGTGAATGATTCGGAGGGCAGGTGTACAGGAGGGCCATaGGTGGCAGCAGGCAGCACATTCCCTTCATCCAGTTGCAGCATG +
Preference number: 6 (lower is better)
Translates to: YLRVNDSEGRCTGGP*VAAGSTFPSSSCSM
Trigger: CATGCTGCAACTGGATGAAGGGAATGTGCTGCCTGCTGCCACCAATGGCCCTCCTGTACACCTGCCCTCCGAATCATTCACCCTCAAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS GCA 72 bp AAGCTTGCCCCACCTATCAATTGTGTCCCGATTAAGTaGAGCGACGACAGTGTCCATCTGGCCCTGGTCTGG +
Preference number: 6 (lower is better)
Translates to: KLAPPINCVPIK*SDDSVHLALVW
Trigger: CCAGACCAGGGCCAGATGGACACTGTCGTCGCTGCACTTAATCGGGACACAATTGATAGGTGGGGCAAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp ATCTTTGACATGTTGAAGCCCAGGTTCTCGAGATACTaGGTGGAGCCCCTGGTGCTTAGGGACAGCATGGCC +
Preference number: 6 (lower is better)
Translates to: IFDMLKPRFSRY*VEPLVLRDSMA
Trigger: GGCCATGCTGTCCCTAAGCACCAGGGGCTCCACCCAGTATCTCGAGAACCTGGGCTTCAACATGTCAAAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 72 bp CCTGGTGGATCTCAGCTTCAGACATCTTTGACATGTTaGAGCCCAGGTTCTCGAGATACTGGGTGGAGCCCC +
Preference number: 6 (lower is better)
Translates to: PGGSQLQTSLTC*SPGSRDTGWSP
Trigger: GGGGCTCCACCCAGTATCTCGAGAACCTGGGCTTCAACATGTCAAAGATGTCTGAAGCTGAGATCCACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CAA 72 bp CCCTGGTGGATCTCAGCTTCAGACATCTTTGACATGTaGAAGCCCAGGTTCTCGAGATACTGGGTGGAGCCC +
Preference number: 6 (lower is better)
Translates to: PWWISASDIFDM*KPRFSRYWVEP
Trigger: GGGCTCCACCCAGTATCTCGAGAACCTGGGCTTCAACATGTCAAAGATGTCTGAAGCTGAGATCCACCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 72 bp AAGGCAAAGTCAACATTGGTGGGAGCCAGGTCTCGGTaGGAACTTGAATCCTCATCAGTGACAGCCTGGGTG +
Preference number: 6 (lower is better)
Translates to: KAKSTLVGARSR*ELESSSVTAWV
Trigger: CACCCAGGCTGTCACTGATGAGGATTCAAGTTCTCACCGAGACCTGGCTCCCACCAATGTTGACTTTGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CAA 90 bp GCTGGATTCATGACTTGGCTCATCATCAGGCTGCTCCATGTGTACTaGTCAAAGGCCAGGAAGATGAAGGGCCTGTTGTACTTGAGGGTG +
Preference number: 6 (lower is better)
Translates to: AGFMTWLIIRLLHVY*SKARKMKGLLYLRV
Trigger: CACCCTCAAGTACAACAGGCCCTTCATCTTCCTGGCCTTTGACAAGTACACATGGAGCAGCCTGATGATGAGCCAAGTCATGAATCCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 72 bp GGGGATCGCCGAATCACGAAAGTAACTAATGTTGCCTaGCTGGACCATCATGGGCACCTTCACTGTGCTTGT +
Preference number: 6 (lower is better)
Translates to: GDRRITKVTNVA*LDHHGHLHCAC
Trigger: ACAAGCACAGTGAAGGTGCCCATGATGGTCCAGTCAGGCAACATTAGTTACTTTCGTGATTCGGCGATCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS GCA 72 bp ACATTGCCCATGTTCATCTCCAAGCCAGTGTCAGACTaGTGGAGAAGGGAATTGAGGTACTGGAAACCCTGG +
Preference number: 6 (lower is better)
Translates to: TLPMFISKPVSD*WRRELRYWKPW
Trigger: CCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCAGTCTGACACTGGCTTGGAGATGAACATGGGCAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp CGATTAAGTGCAGCGACGACAGTGTCCATCTGGCCCTaGTCTGGAAGAATGATGAAGGTAGTTCCATTTCCC +
Preference number: 6 (lower is better)
Translates to: RLSAATTVSIWP*SGRMMKVVPFP
Trigger: GGGAAATGGAACTACCTTCATCATTCTTCCAGACCAGGGCCAGATGGACACTGTCGTCGCTGCACTTAATCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CAA 72 bp ATCTCCAAGCCAGTGTCAGACTGCTGGAGAAGGGAATaGAGGTACTGGAAACCCTGGTGGATCTCAGCTTCA +
Preference number: 6 (lower is better)
Translates to: ISKPVSDCWRRE*RYWKPWWISAS
Trigger: TGAAGCTGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCAGTCTGACACTGGCTTGGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CAA 72 bp GGCAGCACATTCCCTTCATCCAGTTGCAGCATGGCCTaGTGGAGTACCGTTAATGTCAAGGGAGTGTCTTTG +
Preference number: 6 (lower is better)
Translates to: GSTFPSSSCSMA*WSTVNVKGVSL
Trigger: CAAAGACACTCCCTTGACATTAACGGTACTCCACAAGGCCATGCTGCAACTGGATGAAGGGAATGTGCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CAA 90 bp CCCATGTTCATCTCCAAGCCAGTGTCAGACTGCTGGAGAAGGGAATaGAGGTACTGGAAACCCTGGTGGATCTCAGCTTCAGACATCTTT +
Preference number: 6 (lower is better)
Translates to: PMFISKPVSDCWRRE*RYWKPWWISASDIF
Trigger: AAAGATGTCTGAAGCTGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCAGTCTGACACTGGCTTGGAGATGAACATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS TCA 72 bp TGTCAGAATTCAGGGCCACTAGGCGTTTGTACAAGTTaGAGGCAAAGTCAACATTGGTGGGAGCCAGGTCTC +
Preference number: 6 (lower is better)
Translates to: CQNSGPLGVCTS*RQSQHWWEPGL
Trigger: GAGACCTGGCTCCCACCAATGTTGACTTTGCCTTCAACTTGTACAAACGCCTAGTGGCCCTGAATTCTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp CCAGTGTCAGACTGCTGGAGAAGGGAATTGAGGTACTaGAAACCCTGGTGGATCTCAGCTTCAGACATCTTT +
Preference number: 6 (lower is better)
Translates to: PVSDCWRRELRY*KPWWISASDIF
Trigger: AAAGATGTCTGAAGCTGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCAGTCTGACACTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp AAGTGCAGCGACGACAGTGTCCATCTGGCCCTGGTCTaGAAGAATGATGAAGGTAGTTCCATTTCCCACATA +
Preference number: 6 (lower is better)
Translates to: KCSDDSVHLALV*KNDEGSSISHI
Trigger: TATGTGGGAAATGGAACTACCTTCATCATTCTTCCAGACCAGGGCCAGATGGACACTGTCGTCGCTGCACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp GACTGCTGGAGAAGGGAATTGAGGTACTGGAAACCCTaGTGGATCTCAGCTTCAGACATCTTTGACATGTTG +
Preference number: 6 (lower is better)
Translates to: DCWRRELRYWKP*WISASDIFDML
Trigger: CAACATGTCAAAGATGTCTGAAGCTGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CAA 72 bp TTGTCAGAATTCAGGGCCACTAGGCGTTTGTACAAGTaGAAGGCAAAGTCAACATTGGTGGGAGCCAGGTCT +
Preference number: 6 (lower is better)
Translates to: LSEFRATRRLYK*KAKSTLVGARS
Trigger: AGACCTGGCTCCCACCAATGTTGACTTTGCCTTCAACTTGTACAAACGCCTAGTGGCCCTGAATTCTGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CAA 72 bp GCCATGGAGATGCTCACTGGGGAGATTAAGGTATTCTaGTCAGAATTCAGGGCCACTAGGCGTTTGTACAAG +
Preference number: 6 (lower is better)
Translates to: AMEMLTGEIKVF*SEFRATRRLYK
Trigger: CTTGTACAAACGCCTAGTGGCCCTGAATTCTGACAAGAATACCTTAATCTCCCCAGTGAGCATCTCCATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CAA 72 bp TCTTTCAGCTTTAGGTTCTGGAGGAGGAACATGACATaGCCCATGTTCATCTCCAAGCCAGTGTCAGACTGC +
Preference number: 6 (lower is better)
Translates to: SFSFRFWRRNMT*PMFISKPVSDC
Trigger: GCAGTCTGACACTGGCTTGGAGATGAACATGGGCAATGTCATGTTCCTCCTCCAGAACCTAAAGCTGAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CAA 90 bp GAGAATTTGGGGATGTACAGGTTCATCTGCCTTGGAATCATAAGCTaGCCCCACCTATCAATTGTGTCCCGATTAAGTGCAGCGACGACA +
Preference number: 6 (lower is better)
Translates to: ENLGMYRFICLGIIS*PHLSIVSRLSAATT
Trigger: TGTCGTCGCTGCACTTAATCGGGACACAATTGATAGGTGGGGCAAGCTTATGATTCCAAGGCAGATGAACCTGTACATCCCCAAATTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp TGCTGGAGAAGGGAATTGAGGTACTGGAAACCCTGGTaGATCTCAGCTTCAGACATCTTTGACATGTTGAAG +
Preference number: 6 (lower is better)
Translates to: CWRRELRYWKPW*ISASDIFDMLK
Trigger: CTTCAACATGTCAAAGATGTCTGAAGCTGAGATCCACCAGGGTTTCCAGTACCTCAATTCCCTTCTCCAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp CTGCCAGCACATCTTGAAGGTCATAGGTATCAGACATaGAGAATTTGGGGATGTACAGGTTCATCTGCCTTG +
Preference number: 6 (lower is better)
Translates to: LPAHLEGHRYQT*RIWGCTGSSAL
Trigger: CAAGGCAGATGAACCTGTACATCCCCAAATTCTCCATGTCTGATACCTATGACCTTCAAGATGTGCTGGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp AAGGGAGTGTCTTTGGTGGTGTCTGCGAAATCAGATTaGTTGGTGAACAAATCCTTAATGCCCACATCTGCC +
Preference number: 6 (lower is better)
Translates to: KGVSLVVSAKSD*LVNKSLMPTSA
Trigger: GGCAGATGTGGGCATTAAGGATTTGTTCACCAACCAATCTGATTTCGCAGACACCACCAAAGACACTCCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp CATGGAGAATTTGGGGATGTACAGGTTCATCTGCCTTaGAATCATAAGCTTGCCCCACCTATCAATTGTGTC +
Preference number: 6 (lower is better)
Translates to: HGEFGDVQVHLP*NHKLAPPINCV
Trigger: GACACAATTGATAGGTGGGGCAAGCTTATGATTCCAAGGCAGATGAACCTGTACATCCCCAAATTCTCCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS GCA 72 bp TCAGACATGGAGAATTTGGGGATGTACAGGTTCATCTaGCTTGGAATCATAAGCTTGCCCCACCTATCAATT +
Preference number: 6 (lower is better)
Translates to: SDMENLGMYRFI*LGIISLPHLSI
Trigger: AATTGATAGGTGGGGCAAGCTTATGATTCCAAGGCAGATGAACCTGTACATCCCCAAATTCTCCATGTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS GCA 72 bp AGATTGGTTGGTGAACAAATCCTTAATGCCCACATCTaGCAGCACATCTTGAAGGTCATAGGTATCAGACAT +
Preference number: 6 (lower is better)
Translates to: RLVGEQILNAHI*QHILKVIGIRH
Trigger: ATGTCTGATACCTATGACCTTCAAGATGTGCTGGCAGATGTGGGCATTAAGGATTTGTTCACCAACCAATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp AAGGGATGGTCAAGGCCTCTGACTCATAATAGTGTTTaGTGTCTGCTAAGAATGAGTCTTTCAGCTTTAGGT +
Preference number: 6 (lower is better)
Translates to: KGWSRPLTHNSV*CLLRMSLSALG
Trigger: ACCTAAAGCTGAAAGACTCATTCTTAGCAGACACCAAACACTATTATGAGTCAGAGGCCTTGACCATCCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7
CDS CCA 72 bp CTCATTCACATAGAAGTCCTCCTCTCTAGTATTTTCTaGGCTGAAGGGAAGTTTCCATATTCCTTTGAGGAA +
Preference number: 6 (lower is better)
Translates to: LIHIEVLLSSIF*AEGKFPYSFEE
Trigger: TTCCTCAAAGGAATATGGAAACTTCCCTTCAGCCCAGAAAATACTAGAGAGGAGGACTTCTATGTGAATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044159.7