RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SERPINA1D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071177

Ensembl transcript IDs: ENSMUST00000078869.6

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TCAGGCACGAGCCAGGCTAGCCTGTGTTTAATGAAGGGAACCCAATTCAGAAGGGGAGGAAGACAGCAGTaGTGTTGCCTGCGTAATCCA +
Preference number: 4 (lower is better)
Translates to: SGTSQASLCLMKGTQFRRGGRQQ*CCLRNP
Trigger: TGGATTACGCAGGCAACACCACTGCTGTCTTCCTCC...CCTTCTGAATTGGGTTCCCTTCATTAAACACAGGCTAGCCTGGCTCGTGCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS-3UTR TCA 90 bp TCAGGCACGAGCCAGGCTAGCCTGTGTTTAATGAAGGGAACCCAATTCAGAAGGCTGTTTAGCAGGAACTaGGAGATGAGCTCCTTGTTG +
Preference number: 4 (lower is better)
Translates to: SGTSQASLCLMKGTQFRRLFSRN*EMSSLL
Trigger: CAACAAGGAGCTCATCTCTCAGTTCCTGCTAAACAG...CCTTCTGAATTGGGTTCCCTTCATTAAACACAGGCTAGCCTGGCTCGTGCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS-3UTR GCA 90 bp ACGAGCCAGGCTAGCCTGTGTTTAATGAAGGGAACCCAATTCAGAAGGAAGGATAGCAGTGGTGTTGCCTaGGTAATCCATCAGCAGCAC +
Preference number: 4 (lower is better)
Translates to: TSQASLCLMKGTQFRRKDSSGVA*VIHQQH
Trigger: GTGCTGCTGATGGATTACGCAGGCAACACCACTGCT...ATCCTTCCTTCTGAATTGGGTTCCCTTCATTAAACACAGGCTAGCCTGGCTCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS-3UTR CCA 90 bp AGCCTGTGTTTAATGAAGGGAACCCAATTCAGAAGGAAGGATGACTTCTTAGGGCCGAGAGGGTCATCATaGGCACCTTCACTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: SLCLMKGTQFRRKDDFLGPRGSS*APSLWW
Trigger: CCACCACAGTGAAGGTGCCCATGATGACCCTCTCGG...CCCTAAGAAGTCATCCTTCCTTCTGAATTGGGTTCCCTTCATTAAACACAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS-3UTR TCA 90 bp AGCCAGGCTAGCCTGTGTTTAATGAAGGGAACCCAATTCAGAAGGAAGGATGACTTGGAAGTGTTGGACTaGTGGACCAGCTCCCTGTAT +
Preference number: 4 (lower is better)
Translates to: SQASLCLMKGTQFRRKDDLEVLD*WTSSLY
Trigger: ATACAGGGAGCTGGTCCATCAGTCCAACACTTCCAA...GTCATCCTTCCTTCTGAATTGGGTTCCCTTCATTAAACACAGGCTAGCCTGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS-3UTR GCA 90 bp GCTAGCCTGTGTTTAATGAAGGGAACCCAATTCAGAAGGAAGGATGACTTCTTACAGGCAACACAGGCCTaGCAGAAGCAGCAGACTCCA +
Preference number: 4 (lower is better)
Translates to: ASLCLMKGTQFRRKDDFLQATQA*QKQQTP
Trigger: TGGAGTCTGCTGCTTCTGGCAGGCCTGTGTTGCCTG...TAAGAAGTCATCCTTCCTTCTGAATTGGGTTCCCTTCATTAAACACAGGCTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS-3UTR CCA 90 bp GGCACGAGCCAGGCTAGCCTGTGTTTAATGAAGGGAACCCAATTCAGAAGGAAGGTTCTCAGGATCGAATaGCTGTTTCCATTTGCCTTT +
Preference number: 4 (lower is better)
Translates to: GTSQASLCLMKGTQFRRKVLRIE*LFPFAF
Trigger: AAAGGCAAATGGAAACAGCCATTCGATCCTGAGAAC...CTTCCTTCTGAATTGGGTTCCCTTCATTAAACACAGGCTAGCCTGGCTCGTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS-3UTR GCA 90 bp CTGTGTTTAATGAAGGGAACCCAATTCAGAAGGAAGGATGACTTCTTAGGGTGGCCCAGCTGGACAGCATaGTGCAATGATGCACATCAA +
Preference number: 4 (lower is better)
Translates to: LCLMKGTQFRRKDDFLGWPSWTA*CNDAHQ
Trigger: TTGATGTGCATCATTGCAGCATGCTGTCCAGCTGGG...CCACCCTAAGAAGTCATCCTTCCTTCTGAATTGGGTTCCCTTCATTAAACACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS-3UTR CCA 90 bp GCTAGCCTGTGTTTAATGAAGGGAACCCAATTCAGAAGGAAGGATGACTTCTTATCAGCAGCACCCAGCTaGACAGCATGCTGCAATGAT +
Preference number: 4 (lower is better)
Translates to: ASLCLMKGTQFRRKDDFLSAAPS*TACCND
Trigger: ATCATTGCAGCATGCTGTCCAGCTGGGTGCTGCTGA...TAAGAAGTCATCCTTCCTTCTGAATTGGGTTCCCTTCATTAAACACAGGCTAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS-3UTR GCA 90 bp CTGTGTTTAATGAAGGGAACCCAATTCAGAAGGAAGGATGACTTCTTAGGGTGGAGCTGGACAGCATGCTaGAATGATGCACATCAAGCA +
Preference number: 4 (lower is better)
Translates to: LCLMKGTQFRRKDDFLGWSWTAC*NDAHQA
Trigger: TGCTTGATGTGCATCATTGCAGCATGCTGTCCAGCT...CCACCCTAAGAAGTCATCCTTCCTTCTGAATTGGGTTCCCTTCATTAAACACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS-3UTR CCA 90 bp AGCCAGGCTAGCCTGTGTTTAATGAAGGGAACCCAATTCAGAAGGAAGGATGACTATAGTTTCCAGAGATaGACAGTCTGGGGATATGGA +
Preference number: 4 (lower is better)
Translates to: SQASLCLMKGTQFRRKDDYSFQR*TVWGYG
Trigger: TCCATATCCCCAGACTGTCCATCTCTGGAAACTATA...GTCATCCTTCCTTCTGAATTGGGTTCCCTTCATTAAACACAGGCTAGCCTGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS GCA 90 bp TGGTGTTGCCTGCGTAATCCATCAGCAGCACCCAGCTGGACAGCATaGTGCAATGATGCACATCAAGCATGCCCGAGAGGGTCATCATGG +
Preference number: 5 (lower is better)
Translates to: WCCLRNPSAAPSWTA*CNDAHQACPRGSSW
Trigger: CCATGATGACCCTCTCGGGCATGCTTGATGTGCATCATTGCAGCATGCTGTCCAGCTGGGTGCTGCTGATGGATTACGCAGGCAACACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS CCA 90 bp CTCGTCCACATGGAACTCAGCTTCCTCAGTGTTCTCAGGATCGAATaGCTGTTTCCATTTGCCTTTAAAGAGAATGTAATTCGCCAGGGC +
Preference number: 5 (lower is better)
Translates to: LVHMELSFLSVLRIE*LFPFAFKENVIRQG
Trigger: GCCCTGGCGAATTACATTCTCTTTAAAGGCAAATGGAAACAGCCATTCGATCCTGAGAACACTGAGGAAGCTGAGTTCCATGTGGACGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS GCA 72 bp CTGCGTAATCCATCAGCAGCACCCAGCTGGACAGCATaGTGCAATGATGCACATCAAGCATGCCCGAGAGGG +
Preference number: 6 (lower is better)
Translates to: LRNPSAAPSWTA*CNDAHQACPRG
Trigger: CCCTCTCGGGCATGCTTGATGTGCATCATTGCAGCATGCTGTCCAGCTGGGTGCTGCTGATGGATTACGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS TCA 72 bp TCCATCAGCAGCACCCAGCTGGACAGCATGCTGCAATaGTGCACATCAAGCATGCCCGAGAGGGTCATCATG +
Preference number: 6 (lower is better)
Translates to: SISSTQLDSMLQ*CTSSMPERVIM
Trigger: CATGATGACCCTCTCGGGCATGCTTGATGTGCATCATTGCAGCATGCTGTCCAGCTGGGTGCTGCTGATGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS CAA 72 bp GCCTCTTCCAGAAACTTCTCCACCAGCTTCAGGTCATaGTTGACAAAGAGGCCATTGCCTGTGCTCAGCTGC +
Preference number: 6 (lower is better)
Translates to: ASSRNFSTSFRS*LTKRPLPVLSC
Trigger: GCAGCTGAGCACAGGCAATGGCCTCTTTGTCAACAATGACCTGAAGCTGGTGGAGAAGTTTCTGGAAGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS TCA 72 bp CTCACTGGGGAGAAGAAGATGTTGGAAGTGTTGGACTaGTGGACCAGCTCCCTGTATAGTCTGAGGGCAAAG +
Preference number: 6 (lower is better)
Translates to: LTGEKKMLEVLD*WTSSLYSLRAK
Trigger: CTTTGCCCTCAGACTATACAGGGAGCTGGTCCATCAGTCCAACACTTCCAACATCTTCTTCTCCCCAGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6
CDS CCA 72 bp GTGTCTTCAAGTTATAGTTTCCAGAGATGGACAGTCTaGGGATATGGATCTGAGCATCGCTTCTGCGCCTGT +
Preference number: 6 (lower is better)
Translates to: VSSSYSFQRWTV*GYGSEHRFCAC
Trigger: ACAGGCGCAGAAGCGATGCTCAGATCCATATCCCCAGACTGTCCATCTCTGGAAACTATAACTTGAAGACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078869.6