RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SERPINA1C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079015

Ensembl transcript IDs: ENSMUST00000074051.6

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CATTGCCTGCATAATCCATCAGCAGCACCCAGCTGGACAGCGTGCTaGAATGGTGCACATCAAGCATTCCCGAGAGGGTCATCATGGGCA +
Preference number: 5 (lower is better)
Translates to: HCLHNPSAAPSWTAC*NGAHQAFPRGSSWA
Trigger: TGCCCATGATGACCCTCTCGGGAATGCTTGATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGATGGATTATGCAGGCAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6
CDS GCA 90 bp TGGCATTGCCTGCATAATCCATCAGCAGCACCCAGCTGGACAGCGTaGTGCAATGGTGCACATCAAGCATTCCCGAGAGGGTCATCATGG +
Preference number: 5 (lower is better)
Translates to: WHCLHNPSAAPSWTA*CNGAHQAFPRGSSW
Trigger: CCATGATGACCCTCTCGGGAATGCTTGATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGATGGATTATGCAGGCAATGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6
CDS CCA 90 bp AGCTGCAGCTCACTGTCTGGTCTGTTGAGGGTTTGGAGGAGGTGTTaGAAGGACTTGTGGATGTCAGCCTCCGATGTTTGTGTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: SCSSLSGLLRVWRRC*KDLWMSASDVCVRL
Trigger: CAACCTCACACAAACATCGGAGGCTGACATCCACAAGTCCTTCCAACACCTCCTCCAAACCCTCAACAGACCAGACAGTGAGCTGCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6
CDS GCA 72 bp ATCAGCAGCACCCAGCTGGACAGCGTGCTGCAATGGTaGACATCAAGCATTCCCGAGAGGGTCATCATGGGC +
Preference number: 6 (lower is better)
Translates to: ISSTQLDSVLQW*TSSIPERVIMG
Trigger: GCCCATGATGACCCTCTCGGGAATGCTTGATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6
CDS GCA 72 bp CTGCATAATCCATCAGCAGCACCCAGCTGGACAGCGTaGTGCAATGGTGCACATCAAGCATTCCCGAGAGGG +
Preference number: 6 (lower is better)
Translates to: LHNPSAAPSWTA*CNGAHQAFPRG
Trigger: CCCTCTCGGGAATGCTTGATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGATGGATTATGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6
CDS CCA 72 bp TCCATCAGCAGCACCCAGCTGGACAGCGTGCTGCAATaGTGCACATCAAGCATTCCCGAGAGGGTCATCATG +
Preference number: 6 (lower is better)
Translates to: SISSTQLDSVLQ*CTSSIPERVIM
Trigger: CATGATGACCCTCTCGGGAATGCTTGATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6
CDS CAA 90 bp CAGCTGCAGCTCACTGTCTGGTCTGTTGAGGGTTTGGAGGAGGTGTaGGAAGGACTTGTGGATGTCAGCCTCCGATGTTTGTGTGAGGTT +
Preference number: 6 (lower is better)
Translates to: QLQLTVWSVEGLEEV*EGLVDVSLRCLCEV
Trigger: AACCTCACACAAACATCGGAGGCTGACATCCACAAGTCCTTCCAACACCTCCTCCAAACCCTCAACAGACCAGACAGTGAGCTGCAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6
CDS CAA 90 bp GCTAACCTTCTGGGCCTCTTTAGCAGGAACTTGGAGATGAGCTCCTaGCTGAGAGTTTGCTCCAGATGCTGCATCTTCCCATCATCGGGC +
Preference number: 6 (lower is better)
Translates to: ANLLGLFSRNLEMSS*LRVCSRCCIFPSSG
Trigger: GCCCGATGATGGGAAGATGCAGCATCTGGAGCAAACTCTCAGCAAGGAGCTCATCTCCAAGTTCCTGCTAAAGAGGCCCAGAAGGTTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6
CDS GCA 72 bp TCATTGTTGACAAAGAGGCCATTGCCTGTGCTCAGCTaGAGCTCACTGTCTGGTCTGTTGAGGGTTTGGAGG +
Preference number: 6 (lower is better)
Translates to: SLLTKRPLPVLS*SSLSGLLRVWR
Trigger: CCTCCAAACCCTCAACAGACCAGACAGTGAGCTGCAGCTGAGCACAGGCAATGGCCTCTTTGTCAACAATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6
CDS CCA 72 bp TATTCTCCAGAGATGGACAGTCTGGGGAAGTGGATCTaGGCTAACCTTCTGGGCCTCTTTAGCAGGAACTTG +
Preference number: 6 (lower is better)
Translates to: YSPEMDSLGKWI*ANLLGLFSRNL
Trigger: CAAGTTCCTGCTAAAGAGGCCCAGAAGGTTAGCCCAGATCCACTTCCCCAGACTGTCCATCTCTGGAGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6
CDS CCA 72 bp AAGTTATATTCTCCAGAGATGGACAGTCTGGGGAAGTaGATCTGGGCTAACCTTCTGGGCCTCTTTAGCAGG +
Preference number: 6 (lower is better)
Translates to: KLYSPEMDSLGK*IWANLLGLFSR
Trigger: CCTGCTAAAGAGGCCCAGAAGGTTAGCCCAGATCCACTTCCCCAGACTGTCCATCTCTGGAGAATATAACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074051.6