Pregenerated sensors for SERPINA1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066366

Ensembl transcript IDs: ENSMUST00000072876.12, ENSMUST00000085056.8

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AGACAGCAGTGGCATTGCCTGCATAATCCATCAGCAGCACCCAGCTaGACAGCGTGCTGCAATGGTGCACATGAAGCATGCCCGAGAGGG	+
Preference number: 5 (lower is better) Translates to: RQQWHCLHNPSAAPS*TACCNGAHEACPRG Trigger: CCCTCTCGGGCATGCTTCATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGATGGATTATGCAGGCAATGCCACTGCTGTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072876.12 ENSMUST00000085056.8
CDS GCA 90 bp	CATTGCCTGCATAATCCATCAGCAGCACCCAGCTGGACAGCGTGCTaGAATGGTGCACATGAAGCATGCCCGAGAGGGTCATCATGGGCA	+
Preference number: 5 (lower is better) Translates to: HCLHNPSAAPSWTAC*NGAHEACPRGSSWA Trigger: TGCCCATGATGACCCTCTCGGGCATGCTTCATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGATGGATTATGCAGGCAATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072876.12 ENSMUST00000085056.8
CDS GCA 90 bp	TGGCATTGCCTGCATAATCCATCAGCAGCACCCAGCTGGACAGCGTaGTGCAATGGTGCACATGAAGCATGCCCGAGAGGGTCATCATGG	+
Preference number: 5 (lower is better) Translates to: WHCLHNPSAAPSWTA*CNGAHEACPRGSSW Trigger: CCATGATGACCCTCTCGGGCATGCTTCATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGATGGATTATGCAGGCAATGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072876.12 ENSMUST00000085056.8
CDS GCA 72 bp	AGCTGGACAGCGTGCTGCAATGGTGCACATGAAGCATaGCCGAGAGGGTCATCATGGGCACCTTCACCGTGG	+
Preference number: 6 (lower is better) Translates to: SWTACCNGAHEA*PRGSSWAPSPW Trigger: CCACGGTGAAGGTGCCCATGATGACCCTCTCGGGCATGCTTCATGTGCACCATTGCAGCACGCTGTCCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072876.12 ENSMUST00000085056.8
CDS GCA 72 bp	CTGCATAATCCATCAGCAGCACCCAGCTGGACAGCGTaGTGCAATGGTGCACATGAAGCATGCCCGAGAGGG	+
Preference number: 6 (lower is better) Translates to: LHNPSAAPSWTA*CNGAHEACPRG Trigger: CCCTCTCGGGCATGCTTCATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGATGGATTATGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072876.12 ENSMUST00000085056.8
CDS GCA 72 bp	CATAATCCATCAGCAGCACCCAGCTGGACAGCGTGCTaGAATGGTGCACATGAAGCATGCCCGAGAGGGTCA	+
Preference number: 6 (lower is better) Translates to: HNPSAAPSWTAC*NGAHEACPRGS Trigger: TGACCCTCTCGGGCATGCTTCATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGATGGATTATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072876.12 ENSMUST00000085056.8
CDS CCA 72 bp	TGGCATTGCCTGCATAATCCATCAGCAGCACCCAGCTaGACAGCGTGCTGCAATGGTGCACATGAAGCATGC	+
Preference number: 6 (lower is better) Translates to: WHCLHNPSAAPS*TACCNGAHEAC Trigger: GCATGCTTCATGTGCACCATTGCAGCACGCTGTCCAGCTGGGTGCTGCTGATGGATTATGCAGGCAATGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072876.12 ENSMUST00000085056.8
CDS GCA 72 bp	AGCAGGAACTTAGAGATGAGCTCCTTGCTGAGAGTTTaGTCCAGATGCTGCATCTTCCCATCATCGGGCAGA	+
Preference number: 6 (lower is better) Translates to: SRNLEMSSLLRV*SRCCIFPSSGR Trigger: TCTGCCCGATGATGGGAAGATGCAGCATCTGGAGCAAACTCTCAGCAAGGAGCTCATCTCTAAGTTCCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072876.12 ENSMUST00000085056.8
CDS CAA 72 bp	CTGCGCCTGTTTAGCAGGAACTTAGAGATGAGCTCCTaGCTGAGAGTTTGCTCCAGATGCTGCATCTTCCCA	+
Preference number: 6 (lower is better) Translates to: LRLFSRNLEMSS*LRVCSRCCIFP Trigger: TGGGAAGATGCAGCATCTGGAGCAAACTCTCAGCAAGGAGCTCATCTCTAAGTTCCTGCTAAACAGGCGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072876.12 ENSMUST00000085056.8
CDS CCA 72 bp	AAGTTATATTCTCCAGAGATGGACAGTCTGGGGAAGTaGATCTGGGCTAACCTTCTGCGCCTGTTTAGCAGG	+
Preference number: 6 (lower is better) Translates to: KLYSPEMDSLGK*IWANLLRLFSR Trigger: CCTGCTAAACAGGCGCAGAAGGTTAGCCCAGATCCACTTCCCCAGACTGTCCATCTCTGGAGAATATAACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072876.12 ENSMUST00000085056.8
CDS GCA 72 bp	CATGAGATGGAGGGAGTCATTTTCCACCGTGCTTTCTaGCCTTTCACTGTAAATAATCTGGAGAGCCGAACA	+
Preference number: 6 (lower is better) Translates to: HEMEGVIFHRAF*PFTVNNLESRT Trigger: TGTTCGGCTCTCCAGATTATTTACAGTGAAAGGGCAGAAAGCACGGTGGAAAATGACTCCCTCCATCTCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072876.12

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