Pregenerated sensors for SERP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052584Ensembl transcript IDs: ENSMUST00000064517.9, ENSMUST00000227076.2, ENSMUST00000228055.2, ENSMUST00000228524.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGATGTAAAGGGGTGGTCGCTCAGAGGGCCACATGCACACCACAGTaGAACCCGGGGAACCAGCCAGCCAGCCAGCGCCGCCGCCCGGCC | + |
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Preference number: 1 (lower is better) Translates to: GCKGVVAQRATCTPQ*NPGNQPASQRRRPA Trigger: GGCCGGGCGGCGGCGCTGGCTGGCTGGCTGGTTCCCCGGGTTTCACTGTGGTGTGCATGTGGCCCTCTGAGCGACCACCCCTTTACATCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR CCA 90 bp | GCTGGAGGACACAGATGCACGGAGATGTCTTGTGAGAAGGCAATTTaGTCTGACCTCCACCATGGCGTGGGAGGAAACAGGGGGCCTCCT | + |
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Preference number: 1 (lower is better) Translates to: AGGHRCTEMSCEKAI*SDLHHGVGGNRGPP Trigger: AGGAGGCCCCCTGTTTCCTCCCACGCCATGGTGGAGGTCAGACCAAATTGCCTTCTCACAAGACATCTCCGTGCATCTGTGTCCTCCAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR CCA 90 bp | CCAATTCCTGACACAGAAGAGATTGATTGGCAGGATGTAAAGGGGTaGTCGCTCAGAGGGCCACATGCACACCACAGTGAAACCCGGGGA | + |
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Preference number: 1 (lower is better) Translates to: PIPDTEEIDWQDVKG*SLRGPHAHHSETRG Trigger: TCCCCGGGTTTCACTGTGGTGTGCATGTGGCCCTCTGAGCGACCACCCCTTTACATCCTGCCAATCAATCTCTTCTGTGTCAGGAATTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR CCA 90 bp | GGTCCTCTGGGGCTGGCCGGTTCTCATGCACCTCATGATGGTCTCTaGGGTGACTTTCTCTGGCTGTCTCCAGGAAAAGCCAGTATTTAT | + |
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Preference number: 1 (lower is better) Translates to: GPLGLAGSHAPHDGL*GDFLWLSPGKASIY Trigger: ATAAATACTGGCTTTTCCTGGAGACAGCCAGAGAAAGTCACCCCAGAGACCATCATGAGGTGCATGAGAACCGGCCAGCCCCAGAGGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| 3UTR GCA 90 bp | ATCAGCCAACAGAAGAGCAGAGTCCTTTCCGCTGGAGGACACAGATaGACGGAGATGTCTTGTGAGAAGGCAATTTGGTCTGACCTCCAC | + |
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Preference number: 1 (lower is better) Translates to: ISQQKSRVLSAGGHR*TEMSCEKAIWSDLH Trigger: GTGGAGGTCAGACCAAATTGCCTTCTCACAAGACATCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCTGCTCTTCTGTTGGCTGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR CCA 90 bp | ATCCTTATGCTCTGTATGATCTGGAAGATAGCTTGCGAGAGTCGATaGCTGCTGAGATGTCTCCTCCAGACCGTCGGTCTTGGTCCTCTG | + |
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Preference number: 1 (lower is better) Translates to: ILMLCMIWKIACESR*LLRCLLQTVGLGPL Trigger: CAGAGGACCAAGACCGACGGTCTGGAGGAGACATCTCAGCAGCCATCGACTCTCGCAAGCTATCTTCCAGATCATACAGAGCATAAGGAT 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| 3UTR-3UTR TCA 90 bp | CATGCACACCACAGTGAAACCCGGGGAACCAGCCAGCCAGCCAGCGCCGCCGCCTCCTATAAGACCCGCTaGAGGCCTCAGTGGTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: HAHHSETRGTSQPASAAASYKTR*RPQWSF Trigger: GAAGGACCACTGAGGCCTTCAGCGGGTCTTATAGGA...GGCGGCGGCGCTGGCTGGCTGGCTGGTTCCCCGGGTTTCACTGTGGTGTGCATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR CCA 90 bp | CACACCACAGTGAAACCCGGGGAACCAGCCAGCCAGCCAGCGCCGCCGCCCGGCTGTGAGAAGGCAATTTaGTCTGACCTCCACCATGGC | + |
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Preference number: 2 (lower is better) Translates to: HTTVKPGEPASQPAPPPGCEKAI*SDLHHG Trigger: GCCATGGTGGAGGTCAGACCAAATTGCCTTCTCACA...GCCGGGCGGCGGCGCTGGCTGGCTGGCTGGTTCCCCGGGTTTCACTGTGGTGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR GCA 90 bp | GGGCCACATGCACACCACAGTGAAACCCGGGGAACCAGCCAGCCAGCCAGCGCCCCTGGCCCTCTCACATaGCCATCCTTATGCTCTGTA | + |
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Preference number: 2 (lower is better) Translates to: GPHAHHSETRGTSQPASAPGPLT*PSLCSV Trigger: TACAGAGCATAAGGATGGGCATGTGAGAGGGCCAGG...GGCGCTGGCTGGCTGGCTGGTTCCCCGGGTTTCACTGTGGTGTGCATGTGGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| 3UTR-3UTR CCA 90 bp | GGTGGTCGCTCAGAGGGCCACATGCACACCACAGTGAAACCCGGGGAACCAGCCTGTGAGAAGGCAATTTaGTCTGACCTCCACCATGGC | + |
|
Preference number: 2 (lower is better) Translates to: GGRSEGHMHTTVKPGEPACEKAI*SDLHHG Trigger: GCCATGGTGGAGGTCAGACCAAATTGCCTTCTCACA...GGCTGGTTCCCCGGGTTTCACTGTGGTGTGCATGTGGCCCTCTGAGCGACCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGAGAAGGCAATTTGGTCTGACCTCCACCATGGCGTGGGAGGAAACAGGGGGTCGGTCTTGGTCCTCTaGGGCTGGCCGGTTCTCATG | + |
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Preference number: 2 (lower is better) Translates to: CEKAIWSDLHHGVGGNRGSVLVL*GWPVLM Trigger: CATGAGAACCGGCCAGCCCCAGAGGACCAAGACCGA...CCCCCTGTTTCCTCCCACGCCATGGTGGAGGTCAGACCAAATTGCCTTCTCACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| 3UTR-3UTR TCA 90 bp | TCCACCATGGCGTGGGAGGAAACAGGGGGCCTCCTTTCTATCACCCATGGCTTGTCCTATAAGACCCGCTaGAGGCCTCAGTGGTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: STMAWEETGGLLSITHGLSYKTR*RPQWSF Trigger: GAAGGACCACTGAGGCCTTCAGCGGGTCTTATAGGA...CAAGCCATGGGTGATAGAAAGGAGGCCCCCTGTTTCCTCCCACGCCATGGTGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR GCA 90 bp | CAGAAGAGCAGAGTCCTTTCCGCTGGAGGACACAGATGCACGGAGATGTCTTGTCAGTGGTCCTTCACCTaGCAGCAGGAGGGCATCCGC | + |
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Preference number: 2 (lower is better) Translates to: QKSRVLSAGGHRCTEMSCQWSFT*QQEGIR Trigger: GCGGATGCCCTCCTGCTGGCAGGTGAAGGACCACTG...ACAAGACATCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCTGCTCTTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR GCA 90 bp | AGAGTCCTTTCCGCTGGAGGACACAGATGCACGGAGATGTCTTGTGAGAAGGCACAGTGGTCCTTCACCTaGCAGCAGGAGGGCATCCGC | + |
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Preference number: 2 (lower is better) Translates to: RVLSAGGHRCTEMSCEKAQWSFT*QQEGIR Trigger: GCGGATGCCCTCCTGCTGGCAGGTGAAGGACCACTG...TGCCTTCTCACAAGACATCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR GCA 90 bp | AGCAGAGTCCTTTCCGCTGGAGGACACAGATGCACGGAGATGTCTTGTGAGAAGCAGTGGTCCTTCACCTaGCAGCAGGAGGGCATCCGC | + |
|
Preference number: 2 (lower is better) Translates to: SRVLSAGGHRCTEMSCEKQWSFT*QQEGIR Trigger: GCGGATGCCCTCCTGCTGGCAGGTGAAGGACCACTG...CTTCTCACAAGACATCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR TCA 90 bp | GCCAACAGAAGAGCAGAGTCCTTTCCGCTGGAGGACACAGATGCACGGAGATGTGAAGGCAATTTGGTCTaGCCTCCACCATGGCGTGGG | + |
|
Preference number: 2 (lower is better) Translates to: ANRRAESFPLEDTDARRCEGNLV*PPPWRG Trigger: CCCACGCCATGGTGGAGGTCAGACCAAATTGCCTTC...ACATCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCTGCTCTTCTGTTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGCCAACAGAAGAGCAGAGTCCTTTCCGCTGGAGGACACAGATGCACGGAGATCCTATAAGACCCGCTaGAGGCCTCAGTGGTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: SANRRAESFPLEDTDARRSYKTR*RPQWSF Trigger: GAAGGACCACTGAGGCCTTCAGCGGGTCTTATAGGA...TCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCTGCTCTTCTGTTGGCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR TCA 90 bp | CGTGACTTCCAATCAGCCAACAGAAGAGCAGAGTCCTTTCCGCTGGAGGACACAGAAGGCAATTTGGTCTaGCCTCCACCATGGCGTGGG | + |
|
Preference number: 2 (lower is better) Translates to: RDFQSANRRAESFPLEDTEGNLV*PPPWRG Trigger: CCCACGCCATGGTGGAGGTCAGACCAAATTGCCTTC...TGTGTCCTCCAGCGGAAAGGACTCTGCTCTTCTGTTGGCTGATTGGAAGTCACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGAGAAGGCAATTTGGTCTGACCTCCACCATGGCGTGGGAGGAAACAGGGGGCCTCATGATGGTCTCTaGGGTGACTTTCTCTGGCTG | + |
|
Preference number: 2 (lower is better) Translates to: CEKAIWSDLHHGVGGNRGPHDGL*GDFLWL Trigger: CAGCCAGAGAAAGTCACCCCAGAGACCATCATGAGG...CCCCCTGTTTCCTCCCACGCCATGGTGGAGGTCAGACCAAATTGCCTTCTCACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGAGTCCTTTCCGCTGGAGGACACAGATGCACGGAGATGTCTTGTGAGAAGGTGGGGTGACTTTCTCTaGCTGTCTCCAGGAAAAGCC | + |
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Preference number: 2 (lower is better) Translates to: AESFPLEDTDARRCLVRRWGDFL*LSPGKA Trigger: GGCTTTTCCTGGAGACAGCCAGAGAAAGTCACCCCA...CCTTCTCACAAGACATCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| 3UTR CCA 72 bp | GTCTCCTCCAGACCGTCGGTCTTGGTCCTCTGGGGCTaGCCGGTTCTCATGCACCTCATGATGGTCTCTGGG | + |
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Preference number: 3 (lower is better) Translates to: VSSRPSVLVLWG*PVLMHLMMVSG Trigger: CCCAGAGACCATCATGAGGTGCATGAGAACCGGCCAGCCCCAGAGGACCAAGACCGACGGTCTGGAGGAGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| 3UTR CCA 72 bp | CACCTGCCAGCAGGAGGGCATCCGCATACAACTTCCTaGCCCTCTCACATGCCCATCCTTATGCTCTGTATG | + |
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Preference number: 3 (lower is better) Translates to: HLPAGGHPHTTS*PSHMPILMLCM Trigger: CATACAGAGCATAAGGATGGGCATGTGAGAGGGCCAGGAAGTTGTATGCGGATGCCCTCCTGCTGGCAGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| 3UTR TCA 72 bp | ATCACCCATGGCTTGTTTGCTTCCTATAAGACCCGCTaGAGGCCTCAGTGGTCCTTCACCTGCCAGCAGGAG | + |
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Preference number: 3 (lower is better) Translates to: ITHGLFASYKTR*RPQWSFTCQQE Trigger: CTCCTGCTGGCAGGTGAAGGACCACTGAGGCCTTCAGCGGGTCTTATAGGAAGCAAACAAGCCATGGGTGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR CAA 90 bp | TGTGAGAAGGCAATTTGGTCTGACCTCCACCATGGCGTGGGAGGAAACAGGGGGTCACCCATGGCTTGTTaGCTTCCTATAAGACCCGCT | + |
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Preference number: 3 (lower is better) Translates to: CEKAIWSDLHHGVGGNRGSPMAC*LPIRPA Trigger: AGCGGGTCTTATAGGAAGCAAACAAGCCATGGGTGA...CCCCCTGTTTCCTCCCACGCCATGGTGGAGGTCAGACCAAATTGCCTTCTCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR CCA 72 bp | CACAGATGCACGGAGATGTCTTGTGAGAAGGCAATTTaGTCTGACCTCCACCATGGCGTGGGAGGAAACAGG | + |
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Preference number: 3 (lower is better) Translates to: HRCTEMSCEKAI*SDLHHGVGGNR Trigger: CCTGTTTCCTCCCACGCCATGGTGGAGGTCAGACCAAATTGCCTTCTCACAAGACATCTCCGTGCATCTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR CCA 72 bp | GACACAGAAGAGATTGATTGGCAGGATGTAAAGGGGTaGTCGCTCAGAGGGCCACATGCACACCACAGTGAA | + |
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Preference number: 3 (lower is better) Translates to: DTEEIDWQDVKG*SLRGPHAHHSE Trigger: TTCACTGTGGTGTGCATGTGGCCCTCTGAGCGACCACCCCTTTACATCCTGCCAATCAATCTCTTCTGTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR-3UTR CAA 90 bp | AGAGTCCTTTCCGCTGGAGGACACAGATGCACGGAGATGTCTTGTGAGAAGGCATCACCCATGGCTTGTTaGCTTCCTATAAGACCCGCT | + |
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Preference number: 3 (lower is better) Translates to: RVLSAGGHRCTEMSCEKASPMAC*LPIRPA Trigger: AGCGGGTCTTATAGGAAGCAAACAAGCCATGGGTGA...TGCCTTCTCACAAGACATCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR GCA 72 bp | CAGAAGAGCAGAGTCCTTTCCGCTGGAGGACACAGATaGACGGAGATGTCTTGTGAGAAGGCAATTTGGTCT | + |
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Preference number: 3 (lower is better) Translates to: QKSRVLSAGGHR*TEMSCEKAIWS Trigger: AGACCAAATTGCCTTCTCACAAGACATCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCTGCTCTTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR GCA 72 bp | CCCATCCTTATGCTCTGTATGATCTGGAAGATAGCTTaGGAGAGTCGATGGCTGCTGAGATGTCTCCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: PILMLCMIWKIA*ESRWLLRCLLQ Trigger: CTGGAGGAGACATCTCAGCAGCCATCGACTCTCGCAAGCTATCTTCCAGATCATACAGAGCATAAGGATGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| CDS-3UTR GCA 90 bp | GCACACCACAGTGAAACCCGGGGAACCAGCCAGCCAGCCAGCGCCGCCGCCCGGGTGATGTTTTTGCTGTaGTTCTCGTTAGCCATCCGG | + |
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Preference number: 4 (lower is better) Translates to: AHHSETRGTSQPASAAARVMFLL*FSLAIR Trigger: CCGGATGGCTAACGAGAAGCACAGCAAAAACATCAC...CCGGGCGGCGGCGCTGGCTGGCTGGCTGGTTCCCCGGGTTTCACTGTGGTGTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| CDS-3UTR CCA 90 bp | GGTGGTCGCTCAGAGGGCCACATGCACACCACAGTGAAACCCGGGGAACCAGCCGCTACGTTTCCCCTCTaGGTGATGTTTTTGCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: GGRSEGHMHTTVKPGEPAATFPL*VMFLLC Trigger: GCACAGCAAAAACATCACCCAGAGGGGAAACGTAGC...GGCTGGTTCCCCGGGTTTCACTGTGGTGTGCATGTGGCCCTCTGAGCGACCACC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| CDS-3UTR CCA 90 bp | AAGGGGTGGTCGCTCAGAGGGCCACATGCACACCACAGTGAAACCCGGGGAACCGCTACGTTTCCCCTCTaGGTGATGTTTTTGCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: KGWSLRGPHAHHSETRGTATFPL*VMFLLC Trigger: GCACAGCAAAAACATCACCCAGAGGGGAAACGTAGC...GGTTCCCCGGGTTTCACTGTGGTGTGCATGTGGCCCTCTGAGCGACCACCCCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| CDS-3UTR GCA 90 bp | AAGGGGTGGTCGCTCAGAGGGCCACATGCACACCACAGTGAAACCCGGGGAACCGTGATGTTTTTGCTGTaGTTCTCGTTAGCCATCCGG | + |
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Preference number: 4 (lower is better) Translates to: KGWSLRGPHAHHSETRGTVMFLL*FSLAIR Trigger: CCGGATGGCTAACGAGAAGCACAGCAAAAACATCAC...GGTTCCCCGGGTTTCACTGTGGTGTGCATGTGGCCCTCTGAGCGACCACCCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| CDS-3UTR CCA 90 bp | GCTGAGATGTCTCCTCCAGACCGTCGGTCTTGGTCCTCTGGGGCTGGCCGGTTCATATTTCTCTTCTTGTaGCCTCAGGGTTTTGGCTAC | + |
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Preference number: 4 (lower is better) Translates to: AEMSPPDRRSWSSGAGRFIFLFL*PQGFGY Trigger: GTAGCCAAAACCCTGAGGCCACAAGAAGAGAAATAT...GAACCGGCCAGCCCCAGAGGACCAAGACCGACGGTCTGGAGGAGACATCTCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| CDS-3UTR CCA 90 bp | AAGGGGTGGTCGCTCAGAGGGCCACATGCACACCACAGTGAAACCCGGGGAACCATATTTCTCTTCTTGTaGCCTCAGGGTTTTGGCTAC | + |
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Preference number: 4 (lower is better) Translates to: KGWSLRGPHAHHSETRGTIFLFL*PQGFGY Trigger: GTAGCCAAAACCCTGAGGCCACAAGAAGAGAAATAT...GGTTCCCCGGGTTTCACTGTGGTGTGCATGTGGCCCTCTGAGCGACCACCCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 |
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| CDS-3UTR CCA 90 bp | TCACCCATGGCTTGTTTGCTTCCTATAAGACCCGCTGAAGGCCTCAGTGGTCCTCAGGGCCAGCAGCCATaGCCCAACAGGATATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: SPMACLLPIRPAEGLSGPQGQQP*PNRIFL Trigger: GAGAAATATCCTGTTGGGCCATGGCTGCTGGCCCTG...AGGACCACTGAGGCCTTCAGCGGGTCTTATAGGAAGCAAACAAGCCATGGGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 |
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| CDS-3UTR CCA 90 bp | CAGAAGAGCAGAGTCCTTTCCGCTGGAGGACACAGATGCACGGAGATGTCTTGTGCTACGTTTCCCCTCTaGGTGATGTTTTTGCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: QKSRVLSAGGHRCTEMSCATFPL*VMFLLC Trigger: GCACAGCAAAAACATCACCCAGAGGGGAAACGTAGC...ACAAGACATCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCTGCTCTTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| CDS-3UTR CCA 90 bp | ACAGATGCACGGAGATGTCTTGTGAGAAGGCAATTTGGTCTGACCTCCACCATGCAGGGCCAGCAGCCATaGCCCAACAGGATATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: TDARRCLVRRQFGLTSTMQGQQP*PNRIFL Trigger: GAGAAATATCCTGTTGGGCCATGGCTGCTGGCCCTG...CATGGTGGAGGTCAGACCAAATTGCCTTCTCACAAGACATCTCCGTGCATCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 |
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| CDS-3UTR GCA 90 bp | AGAGTCCTTTCCGCTGGAGGACACAGATGCACGGAGATGTCTTGTGAGAAGGCAGTGATGTTTTTGCTGTaGTTCTCGTTAGCCATCCGG | + |
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Preference number: 4 (lower is better) Translates to: RVLSAGGHRCTEMSCEKAVMFLL*FSLAIR Trigger: CCGGATGGCTAACGAGAAGCACAGCAAAAACATCAC...TGCCTTCTCACAAGACATCTCCGTGCATCTGTGTCCTCCAGCGGAAAGGACTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 ENSMUST00000228055.2 |
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| 3UTR CAA 72 bp | GCCCATCCTTATGCTCTGTATGATCTGGAAGATAGCTaGCGAGAGTCGATGGCTGCTGAGATGTCTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: AHPYALYDLEDS*RESMAAEMSPP Trigger: TGGAGGAGACATCTCAGCAGCCATCGACTCTCGCAAGCTATCTTCCAGATCATACAGAGCATAAGGATGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227076.2 |
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| CDS-3UTR CCA 90 bp | GCCTCCTTTCTATCACCCATGGCTTGTTTGCTTCCTATAAGACCCGCTGAAGGCATGCTCTGTATGATCTaGAAGATAGCTGAGCCACAG | + |
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Preference number: 4 (lower is better) Translates to: ASFLSPMACLLPIRPAEGMLCMI*KIAEPQ Trigger: CTGTGGCTCAGCTATCTTCCAGATCATACAGAGCAT...GCCTTCAGCGGGTCTTATAGGAAGCAAACAAGCCATGGGTGATAGAAAGGAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064517.9 |
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| CDS-3UTR CAA 90 bp | CATGCACACCACAGTGAAACCCGGGGAACCAGCCAGCCAGCCAGCGCCGCCGCCAGGATATTTCTCTTCTaGTGGCCTCAGGGTTTTGGC | + |
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Preference number: 5 (lower is better) Translates to: HAHHSETRGTSQPASAAARIFLF*WPQGFG Trigger: GCCAAAACCCTGAGGCCACAAGAAGAGAAATATCCT...GGCGGCGGCGCTGGCTGGCTGGCTGGTTCCCCGGGTTTCACTGTGGTGTGCATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 |
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| CDS-3UTR CAA 90 bp | CGGAGATGTCTTGTGAGAAGGCAATTTGGTCTGACCTCCACCATGGCGTGGGAGAGGATATTTCTCTTCTaGTGGCCTCAGGGTTTTGGC | + |
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Preference number: 5 (lower is better) Translates to: RRCLVRRQFGLTSTMAWERIFLF*WPQGFG Trigger: GCCAAAACCCTGAGGCCACAAGAAGAGAAATATCCT...CTCCCACGCCATGGTGGAGGTCAGACCAAATTGCCTTCTCACAAGACATCTCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064517.9 ENSMUST00000227076.2 |
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| CDS CCA 72 bp | CATGCACCTCATGATGGTCTCTGGGGTGACTTTCTCTaGCTGTCTCCAGGAAAAGCCAGTATTTATGTAGTC | + |
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Preference number: 6 (lower is better) Translates to: HAPHDGLWGDFL*LSPGKASIYVV Trigger: GACTACATAAATACTGGCTTTTCCTGGAGACAGCCAGAGAAAGTCACCCCAGAGACCATCATGAGGTGCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228524.2 |
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