Pregenerated sensors for SERP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027808Ensembl transcript IDs: ENSMUST00000029385.9
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCCATCACTGGGCTGCCAGTCCTGGGTTCTACAGGAAAGCAGGCTaGGTAAACCATGAGGAGCAACCAACCAGTAAGCAGCACCCCTCC | + |
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Preference number: 1 (lower is better) Translates to: CHHWAASPGFYRKAG*VNHEEQPTSKQHPS Trigger: GGAGGGGTGCTGCTTACTGGTTGGTTGCTCCTCATGGTTTACTCAGCCTGCTTTCCTGTAGAACCCAGGACTGGCAGCCCAGTGATGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 90 bp | GTTCAGGGATTCACTTACAGGGTGAAAAGAGGCAGACAACAGTCATaGCCCTACAGACCCACAGCCAGCTTTCTTTCCTGGTCCGATACA | + |
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Preference number: 1 (lower is better) Translates to: VQGFTYRVKRGRQQS*PYRPTASFLSWSDT Trigger: TGTATCGGACCAGGAAAGAAAGCTGGCTGTGGGTCTGTAGGGTCATGACTGTTGTCTGCCTCTTTTCACCCTGTAAGTGAATCCCTGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 90 bp | GGCACATGTGTATTCACTGTTCTGTTCCTTATTACAGATGTGCTATaGACAATTTCCTCGAGTCCCTGCGGCTGTGACTTCCCTGCTATG | + |
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Preference number: 1 (lower is better) Translates to: GTCVFTVLFLITDVL*TISSSPCGCDFPAM Trigger: CATAGCAGGGAAGTCACAGCCGCAGGGACTCGAGGAAATTGTTCATAGCACATCTGTAATAAGGAACAGAACAGTGAATACACATGTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR GCA 90 bp | GTACTGGCACATGTGTATTCACTGTTCTGTTCCTTATTACAGATGTaGTATGAACAATTTCCTCGAGTCCCTGCGGCTGTGACTTCCCTG | + |
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Preference number: 1 (lower is better) Translates to: VLAHVYSLFCSLLQM*YEQFPRVPAAVTSL Trigger: CAGGGAAGTCACAGCCGCAGGGACTCGAGGAAATTGTTCATAGCACATCTGTAATAAGGAACAGAACAGTGAATACACATGTGCCAGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 90 bp | CTAAAAGCATATGTGAAATGCATGTACGTTTTGGGATCGGTTCTGTaGCTTCTACAGAGTACAGTCAGCCAACCCTTGGCTTGGTTTCCG | + |
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Preference number: 1 (lower is better) Translates to: LKAYVKCMYVLGSVL*LLQSTVSQPLAWFP Trigger: CGGAAACCAAGCCAAGGGTTGGCTGACTGTACTCTGTAGAAGTCACAGAACCGATCCCAAAACGTACATGCATTTCACATATGCTTTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 90 bp | ATTAAGTTAGAAAATGTTCAATCCAGGCTCGAATGGGACCCTAGGTaGCTATACTTACTCATGCAAAATTCAAGGCTGTGTAACAGAAAC | + |
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Preference number: 1 (lower is better) Translates to: IKLENVQSRLEWDPR*LYLLMQNSRLCNRN Trigger: GTTTCTGTTACACAGCCTTGAATTTTGCATGAGTAAGTATAGTCACCTAGGGTCCCATTCGAGCCTGGATTGAACATTTTCTAACTTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR GCA 90 bp | CATTTTAGGAGGTGCCATCACTGGGCTGCCAGTCCTGGGTTCTACAGGAAAGCAGCTCAGAGCTCTGCCTaGCTCTATCTCCCAAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: HFRRCHHWAASPGFYRKAAQSSA*LYLPSA Trigger: AGCACTTGGGAGATAGAGGCAGGCAGAGCTCTGAGC...TGCTTTCCTGTAGAACCCAGGACTGGCAGCCCAGTGATGGCACCTCCTAAAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR CCA 90 bp | GTCTGTAAACTTCCCACAGTTCTGCTCTTTGTTTCTGCGACATGCACGGGTTTGAGGAGGTGCCATCACTaGGCTGCCAGTCCTGGGTTC | + |
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Preference number: 2 (lower is better) Translates to: VCKLPTVLLFVSATCTGLRRCHH*AASPGF Trigger: GAACCCAGGACTGGCAGCCCAGTGATGGCACCTCCT...CAAACCCGTGCATGTCGCAGAAACAAAGAGCAGAACTGTGGGAAGTTTACAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR TCA 90 bp | GTCTGTAAACTTCCCACAGTTCTGCTCTTTGTTTCTGCGACATGCACGGGTTTGGGTTCCTGCTCTGCTTaGGTTCCTGTCTTCACTTCC | + |
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Preference number: 2 (lower is better) Translates to: VCKLPTVLLFVSATCTGLGSCSA*VPVFTS Trigger: GGAAGTGAAGACAGGAACTCAAGCAGAGCAGGAACC...CAAACCCGTGCATGTCGCAGAAACAAAGAGCAGAACTGTGGGAAGTTTACAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR GCA 90 bp | GTCTGTAAACTTCCCACAGTTCTGCTCTTTGTTTCTGCGACATGCACGGGTTTGCAGGAAAGATTCCTGTaGATCCCGACCCACTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: VCKLPTVLLFVSATCTGLQERFL*IPTHSF Trigger: GAAGGAGTGGGTCGGGATGCACAGGAATCTTTCCTG...CAAACCCGTGCATGTCGCAGAAACAAAGAGCAGAACTGTGGGAAGTTTACAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR TCA 90 bp | CATTTTAGGAGGTGCCATCACTGGGCTGCCAGTCCTGGGTTCTACAGGAAAGCAACTAAGCCGTGTAGGTaGCCATTTAAAAGCACCTTA | + |
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Preference number: 2 (lower is better) Translates to: HFRRCHHWAASPGFYRKATKPCR*PFKSTL Trigger: TAAGGTGCTTTTAAATGGTCACCTACACGGCTTAGT...TGCTTTCCTGTAGAACCCAGGACTGGCAGCCCAGTGATGGCACCTCCTAAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR TCA 90 bp | CTTTGTTCTGTCAGAGCTAAATCACTATTTGGGCAAATTCATCTCCTTGTTGTGCCTGCCTCTGCCTCCTaGGTGCTGGGATTAAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: LCSVRAKSLFGQIHLLVVPASAS*VLGLKA Trigger: AGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGG...CACAACAAGGAGATGAATTTGCCCAAATAGTGATTTAGCTCTGACAGAACAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTGTTCTGTCAGAGCTAAATCACTATTTGGGCAAATTCATCTCCTTGTTGTGAGCAGCACCCCTCCATaGACACACCAGCTCTTGCCT | + |
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Preference number: 2 (lower is better) Translates to: LCSVRAKSLFGQIHLLVVSSTPP*THQLLP Trigger: AGGCAAGAGCTGGTGTGTCCATGGAGGGGTGCTGCT...CACAACAAGGAGATGAATTTGCCCAAATAGTGATTTAGCTCTGACAGAACAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR CCA 90 bp | GTCTGTAAACTTCCCACAGTTCTGCTCTTTGTTTCTGCGACATGCACGGGTTTGAACTTGCCAACAAACTaGAGTTACCTGAAAGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: VCKLPTVLLFVSATCTGLNLPTN*SYLKGE Trigger: CTCTCCTTTCAGGTAACTCCAGTTTGTTGGCAAGTT...CAAACCCGTGCATGTCGCAGAAACAAAGAGCAGAACTGTGGGAAGTTTACAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR CCA 90 bp | TATCTAGAGCTCAGAGCTCTGCCTGCCTCTATCTCCCAAGTGCTGGGATTAAAGAAATTCACAGGAGAATaGAAAGATCTCAAGGTCAGT | + |
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Preference number: 2 (lower is better) Translates to: YLELRALPASISQVLGLKKFTGE*KDLKVS Trigger: ACTGACCTTGAGATCTTTCCATTCTCCTGTGAATTT...CTTTAATCCCAGCACTTGGGAGATAGAGGCAGGCAGAGCTCTGAGCTCTAGATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR CAA 90 bp | CCATGTTCTTTGAATTACTGTAGCAGTTATGGGTATGGTGTGCCTTaGGTAATTGCCTATAGGACTCTATTCCCAGCTCTACCTGCATGT | + |
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Preference number: 2 (lower is better) Translates to: PCSLNYCSSYGYGVP*VIAYRTLFPALPAC Trigger: ACATGCAGGTAGAGCTGGGAATAGAGTCCTATAGGCAATTACCAAAGGCACACCATACCCATAACTGCTACAGTAATTCAAAGAACATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR GCA 90 bp | CTGGATAAACAAATTTTGTCTGTAAACTTCCCACAGTTCTGCTCTTTGTTTCTGAAATCTGCCTGCCTCTaGCTCCTGAGTGCTGGGATT | + |
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Preference number: 2 (lower is better) Translates to: LDKQILSVNFPQFCSLFLKSACL*LLSAGI Trigger: AATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTT...CAGAAACAAAGAGCAGAACTGTGGGAAGTTTACAGACAAAATTTGTTTATCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR GCA 90 bp | CTGGATAAACAAATTTTGTCTGTAAACTTCCCACAGTTCTGCTCTTTGTTTCTGAGCAGAGAGGAACCCTaGGGTCACTTCCTCTTCTAC | + |
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Preference number: 2 (lower is better) Translates to: LDKQILSVNFPQFCSLFLSREEP*GHFLFY Trigger: GTAGAAGAGGAAGTGACCGCAGGGTTCCTCTCTGCT...CAGAAACAAAGAGCAGAACTGTGGGAAGTTTACAGACAAAATTTGTTTATCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR TCA 90 bp | CAACTATATGCCAAGTGGGTAAGTGTCGAATTCTCTTGCTTTTTACACATTTTTGGATCCAAAGCCCTGTaGGGTTTACACTGCTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: QLYAKWVSVEFSCFLHIFGSKAL*GLHCSQ Trigger: CTGAGAGCAGTGTAAACCTCACAGGGCTTTGGATCC...AAAAATGTGTAAAAAGCAAGAGAATTCGACACTTACCCACTTGGCATATAGTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR GCA 90 bp | GTCTGTAAACTTCCCACAGTTCTGCTCTTTGTTTCTGCGACATGCACGGGTTTGGACTATACTTACTCATaGAAAATTCAAGGCTGTGTA | + |
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Preference number: 2 (lower is better) Translates to: VCKLPTVLLFVSATCTGLDYTYS*KIQGCV Trigger: TACACAGCCTTGAATTTTGCATGAGTAAGTATAGTC...CAAACCCGTGCATGTCGCAGAAACAAAGAGCAGAACTGTGGGAAGTTTACAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR CCA 90 bp | GTCTGTAAACTTCCCACAGTTCTGCTCTTTGTTTCTGCGACATGCACGGGTTTGAGGGAAATTCTGGTATaGAATGATTTGATTCAAAGG | + |
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Preference number: 2 (lower is better) Translates to: VCKLPTVLLFVSATCTGLREILV*NDLIQR Trigger: CCTTTGAATCAAATCATTCCATACCAGAATTTCCCT...CAAACCCGTGCATGTCGCAGAAACAAAGAGCAGAACTGTGGGAAGTTTACAGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR GCA 90 bp | GTCAGAGCTAAATCACTATTTGGGCAAATTCATCTCCTTGTTGTGCTCAGCATTATATTGCTTGGTGTCTaGACCAAGTTCTGGCTAAGT | + |
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Preference number: 2 (lower is better) Translates to: VRAKSLFGQIHLLVVLSIILLGV*TKFWLS Trigger: ACTTAGCCAGAACTTGGTGCAGACACCAAGCAATAT...AATGCTGAGCACAACAAGGAGATGAATTTGCCCAAATAGTGATTTAGCTCTGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR TCA 90 bp | CAACTATATGCCAAGTGGGTAAGTGTCGAATTCTCTTGCTTTTTACACATTTTTGAAGACACCTTGGAATaGCACATGAAGGCGGATATG | + |
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Preference number: 2 (lower is better) Translates to: QLYAKWVSVEFSCFLHIFEDTLE*HMKADM Trigger: CATATCCGCCTTCATGTGTCATTCCAAGGTGTCTTC...AAAAATGTGTAAAAAGCAAGAGAATTCGACACTTACCCACTTGGCATATAGTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR GCA 90 bp | GTCAGAGCTAAATCACTATTTGGGCAAATTCATCTCCTTGTTGTGCTCAGCATTTTCATAAACAGATATTaGTTGGTGTCTGCACCAAGT | + |
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Preference number: 2 (lower is better) Translates to: VRAKSLFGQIHLLVVLSIFINRY*LVSAPS Trigger: ACTTGGTGCAGACACCAAGCAATATCTGTTTATGAA...AATGCTGAGCACAACAAGGAGATGAATTTGCCCAAATAGTGATTTAGCTCTGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR TCA 90 bp | CTGGATAAACAAATTTTGTCTGTAAACTTCCCACAGTTCTGCTCTTTGTTTCTGCTATCACACATGCAATaGAATGGTAACTCTTTGTTC | + |
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Preference number: 2 (lower is better) Translates to: LDKQILSVNFPQFCSLFLLSHMQ*NGNSLF Trigger: GAACAAAGAGTTACCATTTCATTGCATGTGTGATAG...CAGAAACAAAGAGCAGAACTGTGGGAAGTTTACAGACAAAATTTGTTTATCCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR GCA 90 bp | AATGCCTCCATAAGGTCCTGCTATAAAGCCTTTTCTTTATTAGTGATTGATGGGCAAGTTCTGGCTAAGTaGATAAATAGGACTAATTGT | + |
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Preference number: 2 (lower is better) Translates to: NASIRSCYKAFSLLVIDGQVLAK*INRTNC Trigger: ACAATTAGTCCTATTTATGCACTTAGCCAGAACTTG...CCCATCAATCACTAATAAAGAAAAGGCTTTATAGCAGGACCTTATGGAGGCATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR GCA 90 bp | CTTTGTTCTGTCAGAGCTAAATCACTATTTGGGCAAATTCATCTCCTTGTTGTGAGGATAAAAGAAATGTaGTTTTTCCTTGAGCCAAAC | + |
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Preference number: 2 (lower is better) Translates to: LCSVRAKSLFGQIHLLVVRIKEM*FFLEPN Trigger: GTTTGGCTCAAGGAAAAAGCACATTTCTTTTATCCT...CACAACAAGGAGATGAATTTGCCCAAATAGTGATTTAGCTCTGACAGAACAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR GCA 90 bp | TCTATTCCCAGCTCTACCTGCATGTTACTTAGTAATCGCTGGATAAACAAATTTTTCATCTCCTTGTTGTaGTCAGCATTACAGAATAAT | + |
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Preference number: 2 (lower is better) Translates to: SIPSSTCMLLSNRWINKFFISLL*SALQNN Trigger: ATTATTCTGTAATGCTGAGCACAACAAGGAGATGAA...AAATTTGTTTATCCAGCGATTACTAAGTAACATGCAGGTAGAGCTGGGAATAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR CCA 72 bp | ATGAGGAGCAACCAACCAGTAAGCAGCACCCCTCCATaGACACACCAGCTCTTGCCTCTAGGTTCCTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: MRSNQPVSSTPP*THQLLPLGSCS Trigger: AGAGCAGGAACCTAGAGGCAAGAGCTGGTGTGTCCATGGAGGGGTGCTGCTTACTGGTTGGTTGCTCCTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR GCA 72 bp | GCTTTCTTTCCTGGTCCGATACAGGAAAGATTCCTGTaGATCCCGACCCACTCCTTCCCTTCCTTCTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: AFFPGPIQERFL*IPTHSFPSFSS Trigger: AGAGGAGAAGGAAGGGAAGGAGTGGGTCGGGATGCACAGGAATCTTTCCTGTATCGGACCAGGAAAGAAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 72 bp | TTCACTTACAGGGTGAAAAGAGGCAGACAACAGTCATaGCCCTACAGACCCACAGCCAGCTTTCTTTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: FTYRVKRGRQQS*PYRPTASFLSW Trigger: CCAGGAAAGAAAGCTGGCTGTGGGTCTGTAGGGTCATGACTGTTGTCTGCCTCTTTTCACCCTGTAAGTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 72 bp | TCAGAGGGAACCAAGTTCAGGGATTCACTTACAGGGTaGAAAGAGGCAGACAACAGTCATGACCCTACAGAC | + |
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Preference number: 3 (lower is better) Translates to: SEGTKFRDSLTG*KEADNSHDPTD Trigger: GTCTGTAGGGTCATGACTGTTGTCTGCCTCTTTTCACCCTGTAAGTGAATCCCTGAACTTGGTTCCCTCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 72 bp | ACACACCAGCTCTTGCCTCTAGGTTCCTGCTCTGCTTaGGTTCCTGTCTTCACTTCCTTTGATGATGAACAG | + |
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Preference number: 3 (lower is better) Translates to: THQLLPLGSCSA*VPVFTSFDDEQ Trigger: CTGTTCATCATCAAAGGAAGTGAAGACAGGAACTCAAGCAGAGCAGGAACCTAGAGGCAAGAGCTGGTGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR GCA 72 bp | TGTAGACCAGGTTTATCTAGAGCTCAGAGCTCTGCCTaGCTCTATCTCCCAAGTGCTGGGATTAAAGGCATT | + |
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Preference number: 3 (lower is better) Translates to: CRPGLSRAQSSA*LYLPSAGIKGI Trigger: AATGCCTTTAATCCCAGCACTTGGGAGATAGAGGCAGGCAGAGCTCTGAGCTCTAGATAAACCTGGTCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR CAA 90 bp | CTTTGTTCTGTCAGAGCTAAATCACTATTTGGGCAAATTCATCTCCTTGTTGTGTGGACACACCAGCTCTaGCCTCTAGGTTCCTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: LCSVRAKSLFGQIHLLVVWTHQL*PLGSCS Trigger: AGAGCAGGAACCTAGAGGCAAGAGCTGGTGTGTCCA...CACAACAAGGAGATGAATTTGCCCAAATAGTGATTTAGCTCTGACAGAACAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 72 bp | TATGTGAAATGCATGTACGTTTTGGGATCGGTTCTGTaGCTTCTACAGAGTACAGTCAGCCAACCCTTGGCT | + |
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Preference number: 3 (lower is better) Translates to: YVKCMYVLGSVL*LLQSTVSQPLA Trigger: AGCCAAGGGTTGGCTGACTGTACTCTGTAGAAGTCACAGAACCGATCCCAAAACGTACATGCATTTCACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR GCA 72 bp | CATGTGTATTCACTGTTCTGTTCCTTATTACAGATGTaGTATGAACAATTTCCTCGAGTCCCTGCGGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: HVYSLFCSLLQM*YEQFPRVPAAV Trigger: CACAGCCGCAGGGACTCGAGGAAATTGTTCATAGCACATCTGTAATAAGGAACAGAACAGTGAATACACATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR CAA 90 bp | CTTTGTTCTGTCAGAGCTAAATCACTATTTGGGCAAATTCATCTCCTTGTTGTGATTCATGTGGTGCTTTaGCAAGGCACTGTGGCATGG | + |
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Preference number: 3 (lower is better) Translates to: LCSVRAKSLFGQIHLLVVIHVVL*QGTVAW Trigger: CCATGCCACAGTGCCTTGCAAAAGCACCACATGAAT...CACAACAAGGAGATGAATTTGCCCAAATAGTGATTTAGCTCTGACAGAACAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 72 bp | GAAAATGTTCAATCCAGGCTCGAATGGGACCCTAGGTaGCTATACTTACTCATGCAAAATTCAAGGCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: ENVQSRLEWDPR*LYLLMQNSRLC Trigger: ACACAGCCTTGAATTTTGCATGAGTAAGTATAGTCACCTAGGGTCCCATTCGAGCCTGGATTGAACATTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 72 bp | GTGTCTATGTTAACTTGCCAACAAACTGGAGTTACCTaGAAGGAGAGAATCTCAATCGAGAAAATGCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: VSMLTCQQTGVT*KERISIEKMPP Trigger: TGGAGGCATTTTCTCGATTGAGATTCTCTCCTTTCAGGTAACTCCAGTTTGTTGGCAAGTTAACATAGACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR CAA 90 bp | GTCAGAGCTAAATCACTATTTGGGCAAATTCATCTCCTTGTTGTGCTCAGCATTCAGACACAACTTTCATaGACCCAAATATGCATAATC | + |
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Preference number: 3 (lower is better) Translates to: VRAKSLFGQIHLLVVLSIQTQLS*TQICII Trigger: GATTATGCATATTTGGGTCAATGAAAGTTGTGTCTG...AATGCTGAGCACAACAAGGAGATGAATTTGCCCAAATAGTGATTTAGCTCTGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR GCA 72 bp | GAGAATCTCAATCGAGAAAATGCCTCCATAAGGTCCTaGTATAAAGCCTTTTCTTTATTAGTGATTGATGGG | + |
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Preference number: 3 (lower is better) Translates to: ENLNRENASIRS*YKAFSLLVIDG Trigger: CCCATCAATCACTAATAAAGAAAAGGCTTTATAGCAGGACCTTATGGAGGCATTTTCTCGATTGAGATTCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR-3UTR CAA 90 bp | TCTATTCCCAGCTCTACCTGCATGTTACTTAGTAATCGCTGGATAAACAAATTTATTCATAAACAGATATaGCTTGGTGTCTGCACCAAG | + |
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Preference number: 3 (lower is better) Translates to: SIPSSTCMLLSNRWINKFIHKQI*LGVCTK Trigger: CTTGGTGCAGACACCAAGCAATATCTGTTTATGAAT...AAATTTGTTTATCCAGCGATTACTAAGTAACATGCAGGTAGAGCTGGGAATAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR TCA 72 bp | TTCCTGTCTTCACTTCCTTTGATGATGAACAGTGAGTaGCATGGAAATAAATCTTTTCTTCTCAAACTTGCT | + |
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Preference number: 3 (lower is better) Translates to: FLSSLPLMMNSE*HGNKSFLLKLA Trigger: AGCAAGTTTGAGAAGAAAAGATTTATTTCCATGTCACTCACTGTTCATCATCAAAGGAAGTGAAGACAGGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| CDS-3UTR TCA 90 bp | CATTTTAGGAGGTGCCATCACTGGGCTGCCAGTCCTGGGTTCTACAGGAAAGCAGCGACGTTGCCGCGCTaGGTTATGTTCTTGCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: HFRRCHHWAASPGFYRKAATLPR*VMFLLC Trigger: GCACAGCAAGAACATAACTCAGCGCGGCAACGTCGC...TGCTTTCCTGTAGAACCCAGGACTGGCAGCCCAGTGATGGCACCTCCTAAAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR CAA 72 bp | CCAGTAGCCTTGGGAGGAGCCCAAGTGGCCGCACAATaGAACAAGCCAAAGCCCAAGACAATGTATCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: PVALGGAQVAAQ*NKPKPKTMYPA Trigger: AGCAGGATACATTGTCTTGGGCTTTGGCTTGTTCAATTGTGCGGCCACTTGGGCTCCTCCCAAGGCTACTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| CDS-3UTR GCA 90 bp | CATTTTAGGAGGTGCCATCACTGGGCTGCCAGTCCTGGGTTCTACAGGAAAGCAAATAATCTGGAAAATTaGAGAGCCACAGACAACAAA | + |
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Preference number: 4 (lower is better) Translates to: HFRRCHHWAASPGFYRKANNLEN*RATDNK Trigger: TTTGTTGTCTGTGGCTCTGCAATTTTCCAGATTATT...TGCTTTCCTGTAGAACCCAGGACTGGCAGCCCAGTGATGGCACCTCCTAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR CAA 72 bp | AACATAAGCAGGCTTCTCTCCATTCATAAACAGATATaGCTTGGTGTCTGCACCAAGTTCTGGCTAAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: NISRLLSIHKQI*LGVCTKFWLSA Trigger: TGCACTTAGCCAGAACTTGGTGCAGACACCAAGCAATATCTGTTTATGAATGGAGAGAAGCCTGCTTATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR CAA 72 bp | AAGCCCAAGACAATGTATCCTGCTACAATGAAAGCCTaGTGCTACTTTAGAAACCTGATTGCCAGCAACATT | + |
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Preference number: 4 (lower is better) Translates to: KPKTMYPATMKA*CYFRNLIASNI Trigger: AATGTTGCTGGCAATCAGGTTTCTAAAGTAGCACAAGGCTTTCATTGTAGCAGGATACATTGTCTTGGGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR CAA 72 bp | GCAGAGAGGAACCCTGCGGTCACTTCCTCTTCTACATaGCTTTTGTCAAGTATTTTATCACATCAATCTGAA | + |
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Preference number: 4 (lower is better) Translates to: AERNPAVTSSST*LLSSILSHQSE Trigger: TTCAGATTGATGTGATAAAATACTTGACAAAAGCAATGTAGAAGAGGAAGTGACCGCAGGGTTCCTCTCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR CAA 72 bp | TTGAATTACTGTAGCAGTTATGGGTATGGTGTGCCTTaGGTAATTGCCTATAGGACTCTATTCCCAGCTCTA | + |
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Preference number: 4 (lower is better) Translates to: LNYCSSYGYGVP*VIAYRTLFPAL Trigger: TAGAGCTGGGAATAGAGTCCTATAGGCAATTACCAAAGGCACACCATACCCATAACTGCTACAGTAATTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| CDS-3UTR GCA 90 bp | CTGGATAAACAAATTTTGTCTGTAAACTTCCCACAGTTCTGCTCTTTGTTTCTGGTTATGTTCTTGCTGTaGTTCTCGTTGGCCATACGG | + |
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Preference number: 4 (lower is better) Translates to: LDKQILSVNFPQFCSLFLVMFLL*FSLAIR Trigger: CCGTATGGCCAACGAGAAGCACAGCAAGAACATAAC...CAGAAACAAAGAGCAGAACTGTGGGAAGTTTACAGACAAAATTTGTTTATCCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR CAA 72 bp | GTTCTTGTCTTTCTCCGTATCTACACAGTAAACCCTTaGATAATTCTGATCAGTATGACATCAGCAAACCAT | + |
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Preference number: 4 (lower is better) Translates to: VLVFLRIYTVNP*IILISMTSANH Trigger: ATGGTTTGCTGATGTCATACTGATCAGAATTATCAAAGGGTTTACTGTGTAGATACGGAGAAAGACAAGAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| CDS-3UTR TCA 90 bp | CAACTATATGCCAAGTGGGTAAGTGTCGAATTCTCTTGCTTTTTACACATTTTTCCCATCCTGATACTTTaGATAATCTGGAAAATTGCA | + |
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Preference number: 4 (lower is better) Translates to: QLYAKWVSVEFSCFLHIFPILIL*IIWKIA Trigger: TGCAATTTTCCAGATTATTCAAAGTATCAGGATGGG...AAAAATGTGTAAAAAGCAAGAGAATTCGACACTTACCCACTTGGCATATAGTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| 3UTR CAA 72 bp | TTCACCATGATAGCTTTTAGTGGAACTGCAATCACTTaGATTAAGTTAGAAAATGTTCAATCCAGGCTCGAA | + |
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Preference number: 4 (lower is better) Translates to: FTMIAFSGTAIT*IKLENVQSRLE Trigger: TTCGAGCCTGGATTGAACATTTTCTAACTTAATCAAAGTGATTGCAGTTCCACTAAAAGCTATCATGGTGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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| CDS-3UTR CAA 90 bp | AGGCTTCTCTCCATTCATAAACAGATATTGCTTGGTGTCTGCACCAAGTTCTGGGCCCATCCTGATACTTaGAATAATCTGGAAAATTGC | + |
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Preference number: 5 (lower is better) Translates to: RLLSIHKQILLGVCTKFWAHPDT*NNLENC Trigger: GCAATTTTCCAGATTATTCAAAGTATCAGGATGGGC...CCAGAACTTGGTGCAGACACCAAGCAATATCTGTTTATGAATGGAGAGAAGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029385.9 |
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