Pregenerated sensors for SERINC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023232Ensembl transcript IDs: ENSMUST00000105996.8, ENSMUST00000120126.9, ENSMUST00000122374.8, ENSMUST00000146478.8
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACCCTGGAGGCACTGAGAATGGAGAATCCTGACTTGAGCGGGTCCTaGAAGAGAGCAGATAGCTGTGGCCAAGGGTGGGCTGACCCTTGT | + |
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Preference number: 1 (lower is better) Translates to: TLEALRMENPDLSGS*KRADSCGQGWADPC Trigger: ACAAGGGTCAGCCCACCCTTGGCCACAGCTATCTGCTCTCTTCCAGGACCCGCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| 3UTR-3UTR TCA 90 bp | GCTCTGGGCCACTCTCTACTCTCATGCCCTCTTCTGGAGACCCTGAGAACAGGGTGGGCTGACCCTTGTTaGGCCCCAAGGCACCAGGTA | + |
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Preference number: 2 (lower is better) Translates to: ALGHSLLSCPLLETLRTGWADPC*APRHQV Trigger: TACCTGGTGCCTTGGGGCTCAACAAGGGTCAGCCCA...CCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGAGAGTAGAGAGTGGCCCAGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| 3UTR-3UTR TCA 90 bp | GGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGTGGGCTGACCCTTGTTaGGCCCCAAGGCACCAGGTA | + |
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Preference number: 2 (lower is better) Translates to: GLGSEHNVPQTLEALRMEWADPC*APRHQV Trigger: TACCTGGTGCCTTGGGGCTCAACAAGGGTCAGCCCA...CTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTGGAGGCCTGGAGCACAGGCCTTAGTGTATAGGGTGGGTACCCCCACAGGCAAGGGTGGGTATGCATaGTCATGGGCAAAGGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: LWRPGAQALVYRVGTPTGKGGYA*SWAKEG Trigger: GCCTTCCTTTGCCCATGATCATGCATACCCACCCTT...GCCTGTGGGGGTACCCACCCTATACACTAAGGCCTGTGCTCCAGGCCTCCAGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| 3UTR CAA 90 bp | AATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAATCCTGACTaGAGCGGGTCCTGGAAGAGAGCAGATAGCTGTGGCCAAGGGTGG | + |
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Preference number: 2 (lower is better) Translates to: NVPQTLEALRMENPD*SGSWKRADSCGQGW Trigger: CCACCCTTGGCCACAGCTATCTGCTCTCTTCCAGGACCCGCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| 3UTR-3UTR TCA 90 bp | GCTCTGGGCCACTCTCTACTCTCATGCCCTCTTCTGGAGACCCTGAGAACAGGGAGACCCTGGAGGCACTaGGAATGGAGAATCCTGACT | + |
|
Preference number: 2 (lower is better) Translates to: ALGHSLLSCPLLETLRTGRPWRH*EWRILT Trigger: AGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCT...CCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGAGAGTAGAGAGTGGCCCAGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| 3UTR-3UTR TCA 90 bp | TGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTGGGAGACCCTGGAGGCACTaGGAATGGAGAATCCTGACT | + |
|
Preference number: 2 (lower is better) Translates to: CPLLETLRTGVNFSPKGGRPWRH*EWRILT Trigger: AGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCT...CCCACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| 3UTR-3UTR GCA 90 bp | AGACTCATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCTCCCAAGGGTGGGTATaGATGATCATGGGCAAAGGA | + |
|
Preference number: 2 (lower is better) Translates to: RLIKAHGLGRGWALEAWSSQGWV*MIMGKG Trigger: TCCTTTGCCCATGATCATGCATACCCACCCTTGGGA...GCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAATGAGTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| 3UTR-3UTR TCA 90 bp | TCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTGAGAATGGAGAATCCTaGCTTGAGCGGGTCCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: SCPLLETLRTGVNFSPKGENGES*LERVLE Trigger: TTCCAGGACCCGCTCAAGTCAGGATTCTCCATTCTC...ACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| 3UTR TCA 72 bp | GCAGATAGCTGTGGCCAAGGGTGGGCTGACCCTTGTTaGGCCCCAAGGCACCAGGTAGGCAGGCAGCAGGGC | + |
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Preference number: 3 (lower is better) Translates to: ADSCGQGWADPC*APRHQVGRQQG Trigger: GCCCTGCTGCCTGCCTACCTGGTGCCTTGGGGCTCAACAAGGGTCAGCCCACCCTTGGCCACAGCTATCTGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | CTCTGGAGGCCTGGAGCACAGGCCTTAGTGTATAGGGTGGGTACCCCCACAGGCGGAGGCGGCTCACCGTaGAGTTGCGGGTTGAGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: LWRPGAQALVYRVGTPTGGGGSP*SCGLRG Trigger: GCCCCTCAACCCGCAACTCCACGGTGAGCCGCCTCC...GCCTGTGGGGGTACCCACCCTATACACTAAGGCCTGTGCTCCAGGCCTCCAGAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105996.8 |
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| CDS-3UTR CCA 90 bp | CTCTGGAGGCCTGGAGCACAGGCCTTAGTGTATAGGGTGGGTACCCCCACAGGCACAGCCCCGCCCAGCTaGCACAGATCTTCACCCACA | + |
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Preference number: 4 (lower is better) Translates to: LWRPGAQALVYRVGTPTGTAPPS*HRSSPT Trigger: TGTGGGTGAAGATCTGTGCCAGCTGGGCGGGGCTGT...GCCTGTGGGGGTACCCACCCTATACACTAAGGCCTGTGCTCCAGGCCTCCAGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | GGGCAAAGGAAGGCAGGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGAGACCCGAGTTGGGCTaGGCATCCTGGACCTTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: GQRKAGLGSEHNVPQTLERPELG*ASWTLG Trigger: GCCCAAGGTCCAGGATGCTCAGCCCAACTCGGGTCT...CTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCCTGCCTTCCTTTGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | CTCTGGAGGCCTGGAGCACAGGCCTTAGTGTATAGGGTGGGTACCCCCACAGGCATCAGGCTGTTCACCTaGCGGTGGTCAGAGGATCGC | + |
|
Preference number: 4 (lower is better) Translates to: LWRPGAQALVYRVGTPTGIRLFT*RWSEDR Trigger: GCGATCCTCTGACCACCGTCAGGTGAACAGCCTGAT...GCCTGTGGGGGTACCCACCCTATACACTAAGGCCTGTGCTCCAGGCCTCCAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | AGACTCATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCGGCTCACCGTGGAGTTaGGGGTTGAGGGGCAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: RLIKAHGLGRGWALEAWSGSPWS*GLRGNS Trigger: GCTGTTGCCCCTCAACCCGCAACTCCACGGTGAGCC...GCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAATGAGTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000105996.8 |
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| CDS-3UTR CCA 90 bp | ATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCACAGGCACAGCCCCGCCCAGCTaGCACAGATCTTCACCCACA | + |
|
Preference number: 4 (lower is better) Translates to: IKAHGLGRGWALEAWSTGTAPPS*HRSSPT Trigger: TGTGGGTGAAGATCTGTGCCAGCTGGGCGGGGCTGT...GCCTGTGCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | CTCTGGAGGCCTGGAGCACAGGCCTTAGTGTATAGGGTGGGTACCCCCACAGGCTGGGCAGGACAGCAATaGTGGAGACGCAGACACAGA | + |
|
Preference number: 4 (lower is better) Translates to: LWRPGAQALVYRVGTPTGWAGQQ*WRRRHR Trigger: TCTGTGTCTGCGTCTCCATCATTGCTGTCCTGCCCA...GCCTGTGGGGGTACCCACCCTATACACTAAGGCCTGTGCTCCAGGCCTCCAGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | ATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCACAGGCATCAGGCTGTTCACCTaGCGGTGGTCAGAGGATCGC | + |
|
Preference number: 4 (lower is better) Translates to: IKAHGLGRGWALEAWSTGIRLFT*RWSEDR Trigger: GCGATCCTCTGACCACCGTCAGGTGAACAGCCTGAT...GCCTGTGCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | GGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGCTGACGGCCACCTGCTaGTGCTGCACCATCTCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: GLGSEHNVPQTLEALRMELTATC*CCTISA Trigger: GGCAGAGATGGTGCAGCAGCAGCAGGTGGCCGTCAG...CTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | GGGCAAAGGAAGGCAGGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGGCAGCAGACCCGAGTTaGGCTGAGCATCCTGGACCT | + |
|
Preference number: 4 (lower is better) Translates to: GQRKAGLGSEHNVPQTLEAADPS*AEHPGP Trigger: AGGTCCAGGATGCTCAGCCCAACTCGGGTCTGCTGC...CTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCCTGCCTTCCTTTGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | GCTCTGGGCCACTCTCTACTCTCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTATGACGGAGGCTTaGAGCAGACCCGAGTTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: ALGHSLLSCPLLETLRTGVMTEA*SRPELG Trigger: GCCCAACTCGGGTCTGCTGCAAGCCTCCGTCATAAC...CCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGAGAGTAGAGAGTGGCCCAGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | GGGCAAAGGAAGGCAGGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGGTTATGACGGAGGCTTaGAGCAGACCCGAGTTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: GQRKAGLGSEHNVPQTLEVMTEA*SRPELG Trigger: GCCCAACTCGGGTCTGCTGCAAGCCTCCGTCATAAC...CTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCCTGCCTTCCTTTGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | AGACTCATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCCATCCCACCACACCGTaGTGTAGTCCTCCAGGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: RLIKAHGLGRGWALEAWSHPTTP*CSPPGP Trigger: TGGACCTGGAGGACTACAGCACGGTGTGGTGGGATG...GCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAATGAGTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | AATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAATCCTGACTTGAGCGGGCTGACGGCCACCTGCTaGTGCTGCACCATCTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: NVPQTLEALRMENPDLSGLTATC*CCTISA Trigger: GGCAGAGATGGTGCAGCAGCAGCAGGTGGCCGTCAG...CCCGCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | AGACTCATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCTCACTGACGGCCACCTaGTGCTGCTGCACCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: RLIKAHGLGRGWALEAWSSLTAT*CCCTIS Trigger: AGAGATGGTGCAGCAGCAGCAGGTGGCCGTCAGTGA...GCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAATGAGTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | AATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAATCCTGACTTGAGCGGGGCCTGCGTACCAGGCTaGAGAGTCACACTCCTCGGC | + |
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Preference number: 4 (lower is better) Translates to: NVPQTLEALRMENPDLSGACVPG*RVTLLG Trigger: GCCGAGGAGTGTGACTCTCCAGCCTGGTACGCAGGC...CCCGCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | AATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAATCCTGACTTGAGCGGGAGAAGAGGAAGCTGGTaGAGAGGAGGCGGCTCACCG | + |
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Preference number: 4 (lower is better) Translates to: NVPQTLEALRMENPDLSGRRGSW*RGGGSP Trigger: CGGTGAGCCGCCTCCTCTTCACCAGCTTCCTCTTCT...CCCGCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105996.8 |
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| CDS-3UTR TCA 90 bp | GGGCAAAGGAAGGCAGGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGTTACACAGCCACCGCTaGTTCCAGGAGTGGGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: GQRKAGLGSEHNVPQTLELHSHR*FQEWAK Trigger: CTTTGCCCACTCCTGGAATCAGCGGTGGCTGTGTAA...CTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCCTGCCTTCCTTTGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | GCTCTGGGCCACTCTCTACTCTCATGCCCTCTTCTGGAGACCCTGAGAACAGGGTTACACAGCCACCGCTaGTTCCAGGAGTGGGCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: ALGHSLLSCPLLETLRTGLHSHR*FQEWAK Trigger: CTTTGCCCACTCCTGGAATCAGCGGTGGCTGTGTAA...CCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGAGAGTAGAGAGTGGCCCAGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | TCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTAGACCCGAGTTGGGCTaGGCATCCTGGACCTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: SCPLLETLRTGVNFSPKGRPELG*ASWTLG Trigger: GCCCAAGGTCCAGGATGCTCAGCCCAACTCGGGTCT...ACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | AGACTCATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCAACAGCCACATAGGATaGAGGGTGCAGAGCCGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RLIKAHGLGRGWALEAWSNSHIG*RVQSRR Trigger: TCTGCGGCTCTGCACCCTGCATCCTATGTGGCTGTT...GCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAATGAGTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105996.8 |
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| CDS-3UTR GCA 90 bp | TCAGTCCCAAGGGTGGGTATGCATGATCATGGGCAAAGGAAGGCAGGGCTTGGGAGCGTCATCATGACATaGAGGGAGGCCAGCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: SVPRVGMHDHGQRKAGLGSVIMT*REASTR Trigger: CCTGGTGCTGGCCTCCCTGCATGTCATGATGACGCT...CCCAAGCCCTGCCTTCCTTTGCCCATGATCATGCATACCCACCCTTGGGACTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | GGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAGCGTCATCATGACATaGAGGGAGGCCAGCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: GLGSEHNVPQTLEALRMESVIMT*REASTR Trigger: CCTGGTGCTGGCCTCCCTGCATGTCATGATGACGCT...CTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | TCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTGCCTGCGTACCAGGCTaGAGAGTCACACTCCTCGGC | + |
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Preference number: 4 (lower is better) Translates to: SCPLLETLRTGVNFSPKGACVPG*RVTLLG Trigger: GCCGAGGAGTGTGACTCTCCAGCCTGGTACGCAGGC...ACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | GGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAAGACCTTGCCCTCATaGCAGGCACCAGACTCCGTG | + |
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Preference number: 4 (lower is better) Translates to: GLGSEHNVPQTLEALRMEKTLPS*QAPDSV Trigger: CACGGAGTCTGGTGCCTGCCATGAGGGCAAGGTCTT...CTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | AATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAATCCTGACTTGAGCGGGGCAGCAGACCCGAGTTaGGCTGAGCATCCTGGACCT | + |
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Preference number: 4 (lower is better) Translates to: NVPQTLEALRMENPDLSGAADPS*AEHPGP Trigger: AGGTCCAGGATGCTCAGCCCAACTCGGGTCTGCTGC...CCCGCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | TGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTGGGTGGGCAGGACAGCAATaGTGGAGACGCAGACACAGA | + |
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Preference number: 4 (lower is better) Translates to: CPLLETLRTGVNFSPKGGWAGQQ*WRRRHR Trigger: TCTGTGTCTGCGTCTCCATCATTGCTGTCCTGCCCA...CCCACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | GGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGCTGAGGTCCAAGTGCTaGTCATCTTCCGGGTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: GLGSEHNVPQTLEALRMELRSKC*SSSGSL Trigger: GAGAGACCCGGAAGATGATCAGCACTTGGACCTCAG...CTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | AGACTCATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCGAAGAAGAAAAGGCCTaGGTACCAGGCTGGAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: RLIKAHGLGRGWALEAWSEEEKA*VPGWRV Trigger: GACTCTCCAGCCTGGTACGCAGGCCTTTTCTTCTTC...GCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAATGAGTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| 3UTR CAA 72 bp | CAGACCCTGGAGGCACTGAGAATGGAGAATCCTGACTaGAGCGGGTCCTGGAAGAGAGCAGATAGCTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: QTLEALRMENPD*SGSWKRADSCG Trigger: GCCACAGCTATCTGCTCTCTTCCAGGACCCGCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | TGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTGGGTGGGCAGGTGAGGGTTaGATTTTTGGTCAGGGACGT | + |
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Preference number: 4 (lower is better) Translates to: CPLLETLRTGVNFSPKGGWAGEG*IFGQGR Trigger: ACGTCCCTGACCAAAAATGCAACCCTCACCTGCCCA...CCCACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | TCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTCTGCTGCACCATCTCTaGCGGACACTCCTCTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: SCPLLETLRTGVNFSPKGLLHHL*RTLLCL Trigger: CAGACAGAGGAGTGTCCGGCAGAGATGGTGCAGCAG...ACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | TCAGTCCCAAGGGTGGGTATGCATGATCATGGGCAAAGGAAGGCAGGGCTTGGGGTGCCACAGCAGCGATaGACAACAGGTAGAAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: SVPRVGMHDHGQRKAGLGVPQQR*TTGRRG Trigger: TCCTCTTCTACCTGTTGTCCATCGCTGCTGTGGCAC...CCCAAGCCCTGCCTTCCTTTGCCCATGATCATGCATACCCACCCTTGGGACTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | TCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTAAGACCTTGCCCTCATaGCAGGCACCAGACTCCGTG | + |
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Preference number: 4 (lower is better) Translates to: SCPLLETLRTGVNFSPKGKTLPS*QAPDSV Trigger: CACGGAGTCTGGTGCCTGCCATGAGGGCAAGGTCTT...ACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | ATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCACAGGCATAGGGCAGACCAGGTaGCAAACATTGTATACAAGG | + |
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Preference number: 4 (lower is better) Translates to: IKAHGLGRGWALEAWSTGIGQTR*QTLYTR Trigger: CCTTGTATACAATGTTTGTCACCTGGTCTGCCCTAT...GCCTGTGCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | TCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTCTGAGGTCCAAGTGCTaGTCATCTTCCGGGTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: SCPLLETLRTGVNFSPKGLRSKC*SSSGSL Trigger: GAGAGACCCGGAAGATGATCAGCACTTGGACCTCAG...ACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | TCAGTCCCAAGGGTGGGTATGCATGATCATGGGCAAAGGAAGGCAGGGCTTGGGGATCTTCACCCACACTaGGGTCCAAGTGCTGATCAT | + |
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Preference number: 4 (lower is better) Translates to: SVPRVGMHDHGQRKAGLGDLHPH*GPSADH Trigger: ATGATCAGCACTTGGACCTCAGTGTGGGTGAAGATC...CCCAAGCCCTGCCTTCCTTTGCCCATGATCATGCATACCCACCCTTGGGACTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | CATAATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAATCCTGACTTGAGCCATCCCACCACACCGTaGTGTAGTCCTCCAGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: HNVPQTLEALRMENPDLSHPTTP*CSPPGP Trigger: TGGACCTGGAGGACTACAGCACGGTGTGGTGGGATG...GCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | CATAATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAATCCTGACTTGAGCCTGCTGCACCATCTCTaGCGGACACTCCTCTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: HNVPQTLEALRMENPDLSLLHHL*RTLLCL Trigger: CAGACAGAGGAGTGTCCGGCAGAGATGGTGCAGCAG...GCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | GCTCTGGGCCACTCTCTACTCTCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGAAGAAGAAAAAGGCTaGTGTGGCAAAGCACATACG | + |
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Preference number: 4 (lower is better) Translates to: ALGHSLLSCPLLETLRTGEEEKG*CGKAHT Trigger: CGTATGTGCTTTGCCACAGCAGCCTTTTTCTTCTTC...CCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGAGAGTAGAGAGTGGCCCAGAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | TCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTTGGGCAGGTGAGGGTTaGATTTTTGGTCAGGGACGT | + |
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Preference number: 4 (lower is better) Translates to: SCPLLETLRTGVNFSPKGWAGEG*IFGQGR Trigger: ACGTCCCTGACCAAAAATGCAACCCTCACCTGCCCA...ACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | GCTCTGGGCCACTCTCTACTCTCATGCCCTCTTCTGGAGACCCTGAGAACAGGGAGAAAAAGGCTGCTGTaGCAAAGCACATACGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: ALGHSLLSCPLLETLRTGRKRLL*QSTYGR Trigger: TCTACCGTATGTGCTTTGCCACAGCAGCCTTTTTCT...CCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGAGAGTAGAGAGTGGCCCAGAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | CTCTGGAGGCCTGGAGCACAGGCCTTAGTGTATAGGGTGGGTACCCCCACAGGCAGATCATTAACAGCATaGAGAAGAAGAAAAAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LWRPGAQALVYRVGTPTGRSLTA*RRRKRL Trigger: CAGCCTTTTTCTTCTTCTTCATGCTGTTAATGATCT...GCCTGTGGGGGTACCCACCCTATACACTAAGGCCTGTGCTCCAGGCCTCCAGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | TCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTAGGAGTAGCTGTAGGTaGCACCATCCTGCTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: SCPLLETLRTGVNFSPKGRSSCR*HHPAHC Trigger: ACAATGAGCAGGATGGTGTCACCTACAGCTACTCCT...ACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR GCA 90 bp | TCAGTCCCAAGGGTGGGTATGCATGATCATGGGCAAAGGAAGGCAGGGCTTGGGGAAGAAGAAAAAGGCTaGTGTGGCAAAGCACATACG | + |
|
Preference number: 4 (lower is better) Translates to: SVPRVGMHDHGQRKAGLGEEEKG*CGKAHT Trigger: CGTATGTGCTTTGCCACAGCAGCCTTTTTCTTCTTC...CCCAAGCCCTGCCTTCCTTTGCCCATGATCATGCATACCCACCCTTGGGACTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | TGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTGGGAGAAAAAGGCTGCTGTaGCAAAGCACATACGGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: CPLLETLRTGVNFSPKGGRKRLL*QSTYGR Trigger: TCTACCGTATGTGCTTTGCCACAGCAGCCTTTTTCT...CCCACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CCA 90 bp | CATAATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAATCCTGACTTGAGCGTGCCACAGCAGCGATaGACAACAGGTAGAAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: HNVPQTLEALRMENPDLSVPQQR*TTGRRG Trigger: TCCTCTTCTACCTGTTGTCCATCGCTGCTGTGGCAC...GCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATTATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | ATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCACAGGCAGATCATTAACAGCATaGAGAAGAAGAAAAAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: IKAHGLGRGWALEAWSTGRSLTA*RRRKRL Trigger: CAGCCTTTTTCTTCTTCTTCATGCTGTTAATGATCT...GCCTGTGCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | CATAATGTCCCACAGACCCTGGAGGCACTGAGAATGGAGAATCCTGACTTGAGCGATCTTCACCCACACTaGGGTCCAAGTGCTGATCAT | + |
|
Preference number: 4 (lower is better) Translates to: HNVPQTLEALRMENPDLSDLHPH*GPSADH Trigger: ATGATCAGCACTTGGACCTCAGTGTGGGTGAAGATC...GCTCAAGTCAGGATTCTCCATTCTCAGTGCCTCCAGGGTCTGTGGGACATTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR TCA 90 bp | TCATGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTATAGGGCAGACCAGGTaGCAAACATTGTATACAAGG | + |
|
Preference number: 4 (lower is better) Translates to: SCPLLETLRTGVNFSPKGIGQTR*QTLYTR Trigger: CCTTGTATACAATGTTTGTCACCTGGTCTGCCCTAT...ACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS GCA 90 bp | GGCTCACCGTGGAGTTGCGGGTTGAGGGGCAACAGCCACATAGGATaGAGGGTGCAGAGCCGCAGAGGCAGGATGCTGTGTAGTCCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: GSPWSCGLRGNSHIG*RVQSRRGRMLCSPV Trigger: GACAGGACTACACAGCATCCTGCCTCTGCGGCTCTGCACCCTGCATCCTATGTGGCTGTTGCCCCTCAACCCGCAACTCCACGGTGAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120126.9 |
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| CDS-3UTR CAA 90 bp | GGGCAAAGGAAGGCAGGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGCTGCAGGACCAGGGGTaGCTGGGTCCTGTCCTCACA | + |
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Preference number: 5 (lower is better) Translates to: GQRKAGLGSEHNVPQTLELQDQG*LGPVLT Trigger: TGTGAGGACAGGACCCAGCAACCCCTGGTCCTGCAG...CTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCCTGCCTTCCTTTGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CAA 90 bp | TGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTGGGCTGCAGGACCAGGGGTaGCTGGGTCCTGTCCTCACA | + |
|
Preference number: 5 (lower is better) Translates to: CPLLETLRTGVNFSPKGGLQDQG*LGPVLT Trigger: TGTGAGGACAGGACCCAGCAACCCCTGGTCCTGCAG...CCCACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CAA 90 bp | AGACTCATTAAGGCACATGGTCTAGGAAGGGGGTGGGCTCTGGAGGCCTGGAGCGGTTATGACGGAGGCTaGCAGCAGACCCGAGTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: RLIKAHGLGRGWALEAWSGYDGG*QQTRVG Trigger: CCCAACTCGGGTCTGCTGCAAGCCTCCGTCATAACC...GCTCCAGGCCTCCAGAGCCCACCCCCTTCCTAGACCATGTGCCTTAATGAGTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS TCA 90 bp | GTAGAGGAACAGCCCCGCCCAGCTGGCACAGATCTTCACCCACACTaGGGTCCAAGTGCTGATCATCTTCCGGGTCTCTCCAGGGCTGTA | + |
|
Preference number: 5 (lower is better) Translates to: VEEQPRPAGTDLHPH*GPSADHLPGLSRAV Trigger: TACAGCCCTGGAGAGACCCGGAAGATGATCAGCACTTGGACCTCAGTGTGGGTGAAGATCTGTGCCAGCTGGGCGGGGCTGTTCCTCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 ENSMUST00000122374.8 |
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| CDS-3UTR CAA 90 bp | GGGCAAAGGAAGGCAGGGCTTGGGTCAGAGCATAATGTCCCACAGACCCTGGAGAGGCTGATGAAGACCTaGCCCTCATGGCAGGCACCA | + |
|
Preference number: 5 (lower is better) Translates to: GQRKAGLGSEHNVPQTLERLMKT*PSWQAP Trigger: TGGTGCCTGCCATGAGGGCAAGGTCTTCATCAGCCT...CTCCAGGGTCTGTGGGACATTATGCTCTGACCCAAGCCCTGCCTTCCTTTGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CAA 90 bp | TGCCCTCTTCTGGAGACCCTGAGAACAGGGGTTAACTTCAGTCCCAAGGGTGGGGGTTATGACGGAGGCTaGCAGCAGACCCGAGTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: CPLLETLRTGVNFSPKGGGYDGG*QQTRVG Trigger: CCCAACTCGGGTCTGCTGCAAGCCTCCGTCATAACC...CCCACCCTTGGGACTGAAGTTAACCCCTGTTCTCAGGGTCTCCAGAAGAGGGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CAA 90 bp | CTCTGGAGGCCTGGAGCACAGGCCTTAGTGTATAGGGTGGGTACCCCCACAGGCCCAGGGCTGTACCAGTaGGTAAGCGTCATCATGACA | + |
|
Preference number: 5 (lower is better) Translates to: LWRPGAQALVYRVGTPTGPGLYQ*VSVIMT Trigger: TGTCATGATGACGCTTACCAACTGGTACAGCCCTGG...GCCTGTGGGGGTACCCACCCTATACACTAAGGCCTGTGCTCCAGGCCTCCAGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CAA 90 bp | TCAGTCCCAAGGGTGGGTATGCATGATCATGGGCAAAGGAAGGCAGGGCTTGGGAGGCTGATGAAGACCTaGCCCTCATGGCAGGCACCA | + |
|
Preference number: 5 (lower is better) Translates to: SVPRVGMHDHGQRKAGLGRLMKT*PSWQAP Trigger: TGGTGCCTGCCATGAGGGCAAGGTCTTCATCAGCCT...CCCAAGCCCTGCCTTCCTTTGCCCATGATCATGCATACCCACCCTTGGGACTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS-3UTR CAA 90 bp | CTCTGGAGGCCTGGAGCACAGGCCTTAGTGTATAGGGTGGGTACCCCCACAGGCACACAGAAGGTGAGATaGAGGCTGATGAAGACCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LWRPGAQALVYRVGTPTGTQKVR*RLMKTL Trigger: CAAGGTCTTCATCAGCCTCAATCTCACCTTCTGTGT...GCCTGTGGGGGTACCCACCCTATACACTAAGGCCTGTGCTCCAGGCCTCCAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000122374.8 |
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| CDS TCA 90 bp | TACCAGGCTGGAGAGTCACACTCCTCGGCCTTACACAGCCACCGCTaGTTCCAGGAGTGGGCAAAGTCAACAAACAGGATCAGCTGGATG | + |
|
Preference number: 5 (lower is better) Translates to: YQAGESHSSALHSHR*FQEWAKSTNRISWM Trigger: CATCCAGCTGATCCTGTTTGTTGACTTTGCCCACTCCTGGAATCAGCGGTGGCTGTGTAAGGCCGAGGAGTGTGACTCTCCAGCCTGGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 ENSMUST00000122374.8 ENSMUST00000146478.8 |
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| CDS GCA 90 bp | GCCCTCATGGCAGGCACCAGACTCCGTGTAGTAGACGAACATCAGTaGCACAGCAGCGATGGACAACAGGTAGAAGAGGAAGGTGAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: ALMAGTRLRVVDEHQ*HSSDGQQVEEEGEE Trigger: TTCTTCACCTTCCTCTTCTACCTGTTGTCCATCGCTGCTGTGGCACTGATGTTCGTCTACTACACGGAGTCTGGTGCCTGCCATGAGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 ENSMUST00000122374.8 |
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| CDS GCA 72 bp | TGGAGTTGCGGGTTGAGGGGCAACAGCCACATAGGATaGAGGGTGCAGAGCCGCAGAGGCAGGATGCGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: WSCGLRGNSHIG*RVQSRRGRMRS Trigger: GCTGCGCATCCTGCCTCTGCGGCTCTGCACCCTGCATCCTATGTGGCTGTTGCCCCTCAACCCGCAACTCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105996.8 |
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| CDS GCA 72 bp | CGAGGCCCACAATGCTCGGGGCATCCCACCACACCGTaGTGTAGTCCTCCAGGTCCACCTGGCCTGTTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: RGPQCSGHPTTP*CSPPGPPGLFH Trigger: ATGGAACAGGCCAGGTGGACCTGGAGGACTACAGCACGGTGTGGTGGGATGCCCCGAGCATTGTGGGCCTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 ENSMUST00000122374.8 |
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| CDS CAA 90 bp | CCCAAGAAGAGGAAGCTGGTGAAGAGGAGGCGGCTCACCGTGGAGTaGCGGGTTGAGGGGCAACAGCCACATAGGATGCAGGGTGCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: PKKRKLVKRRRLTVE*RVEGQQPHRMQGAE Trigger: CTCTGCACCCTGCATCCTATGTGGCTGTTGCCCCTCAACCCGCAACTCCACGGTGAGCCGCCTCCTCTTCACCAGCTTCCTCTTCTTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 |
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| CDS TCA 72 bp | CAGCCCCGCCCAGCTGGCACAGATCTTCACCCACACTaGGGTCCAAGTGCTGATCATCTTCCGGGTCTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: QPRPAGTDLHPH*GPSADHLPGLS Trigger: GGAGAGACCCGGAAGATGATCAGCACTTGGACCTCAGTGTGGGTGAAGATCTGTGCCAGCTGGGCGGGGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 ENSMUST00000122374.8 |
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| CDS GCA 72 bp | TGGAGTTGCGGGTTGAGGGGCAACAGCCACATAGGATaGAGGGTGCAGAGCCGCAGAGGCAGGATGCTGTGT | + |
|
Preference number: 6 (lower is better) Translates to: WSCGLRGNSHIG*RVQSRRGRMLC Trigger: ACACAGCATCCTGCCTCTGCGGCTCTGCACCCTGCATCCTATGTGGCTGTTGCCCCTCAACCCGCAACTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120126.9 |
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| CDS CAA 72 bp | AGGAAGCTGGTGAAGAGGAGGCGGCTCACCGTGGAGTaGCGGGTTGAGGGGCAACAGCCACATAGGATGCAG | + |
|
Preference number: 6 (lower is better) Translates to: RKLVKRRRLTVE*RVEGQQPHRMQ Trigger: CTGCATCCTATGTGGCTGTTGCCCCTCAACCCGCAACTCCACGGTGAGCCGCCTCCTCTTCACCAGCTTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 |
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| CDS CAA 90 bp | GGCAGACCAGGTGACAAACATTGTATACAAGGTTATGACGGAGGCTaGCAGCAGACCCGAGTTGGGCTGAGCATCCTGGACCTTGGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: GRPGDKHCIQGYDGG*QQTRVGLSILDLGQ Trigger: CTGCCCAAGGTCCAGGATGCTCAGCCCAACTCGGGTCTGCTGCAAGCCTCCGTCATAACCTTGTATACAATGTTTGTCACCTGGTCTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 ENSMUST00000122374.8 |
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| CDS TCA 72 bp | GGAGAGTCACACTCCTCGGCCTTACACAGCCACCGCTaGTTCCAGGAGTGGGCAAAGTCAACAAACAGGATC | + |
|
Preference number: 6 (lower is better) Translates to: GESHSSALHSHR*FQEWAKSTNRI Trigger: GATCCTGTTTGTTGACTTTGCCCACTCCTGGAATCAGCGGTGGCTGTGTAAGGCCGAGGAGTGTGACTCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 ENSMUST00000122374.8 ENSMUST00000146478.8 |
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| CDS GCA 72 bp | GCAGGCACCAGACTCCGTGTAGTAGACGAACATCAGTaGCACAGCAGCGATGGACAACAGGTAGAAGAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: AGTRLRVVDEHQ*HSSDGQQVEEE Trigger: TTCCTCTTCTACCTGTTGTCCATCGCTGCTGTGGCACTGATGTTCGTCTACTACACGGAGTCTGGTGCCTGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 ENSMUST00000122374.8 |
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| CDS CAA 72 bp | GGTGACAAACATTGTATACAAGGTTATGACGGAGGCTaGCAGCAGACCCGAGTTGGGCTGAGCATCCTGGAC | + |
|
Preference number: 6 (lower is better) Translates to: GDKHCIQGYDGG*QQTRVGLSILD Trigger: GTCCAGGATGCTCAGCCCAACTCGGGTCTGCTGCAAGCCTCCGTCATAACCTTGTATACAATGTTTGTCACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105996.8 ENSMUST00000120126.9 ENSMUST00000122374.8 |
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