Pregenerated sensors for SERINC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019877Ensembl transcript IDs: ENSMUST00000020027.11, ENSMUST00000169122.8, ENSMUST00000170062.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCCCTCCACCTCCTGTACTGTTTTCCACTAACTATGGAACATCCTaGGCCTACCTAGTAAGAGAAGATTCTGACAAAATTAAAGTGACT | + |
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Preference number: 1 (lower is better) Translates to: FPPPPVLFSTNYGTS*AYLVREDSDKIKVT Trigger: AGTCACTTTAATTTTGTCAGAATCTTCTCTTACTAGGTAGGCCCAGGATGTTCCATAGTTAGTGGAAAACAGTACAGGAGGTGGAGGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| 3UTR CCA 90 bp | AACAGTGTTACACTTACACAACAGCACATACAACTTTACAAAAATTaGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGACT | + |
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Preference number: 1 (lower is better) Translates to: NSVTLTQQHIQLYKN*EYCYCQIDNGQSGT Trigger: AGTCCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTTGTAAAGTTGTATGTGCTGTTGTGTAAGTGTAACACTGTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| 3UTR CAA 90 bp | TTTAAACCCGTATTGCCAGTGACTTCCTGTGACGGCTCCTGTCTATaGCTTAGCTTCCCTCCACCTCCTGTACTGTTTTCCACTAACTAT | + |
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Preference number: 2 (lower is better) Translates to: FKPVLPVTSCDGSCL*LSFPPPPVLFSTNY Trigger: ATAGTTAGTGGAAAACAGTACAGGAGGTGGAGGGAAGCTAAGCAATAGACAGGAGCCGTCACAGGAAGTCACTGGCAATACGGGTTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| 3UTR CAA 90 bp | GTAAGTTGTCTATTCCTCAAGTTAATTATCCTCCTGGCCTCATGTTaGGATAAAAAGAAGAAAAGCATGCTGGACAGCAGCGATACATTT | + |
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Preference number: 2 (lower is better) Translates to: VSCLFLKLIILLASC*DKKKKSMLDSSDTF Trigger: AAATGTATCGCTGCTGTCCAGCATGCTTTTCTTCTTTTTATCCAAACATGAGGCCAGGAGGATAATTAACTTGAGGAATAGACAACTTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| 3UTR CAA 90 bp | AAACAGTGTTACACTTACACAACAGCACATACAACTTTACAAAAATaGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGAC | + |
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Preference number: 2 (lower is better) Translates to: KQCYTYTTAHTTLQK*GILLLSNRQWPKWD Trigger: GTCCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTTGTAAAGTTGTATGTGCTGTTGTGTAAGTGTAACACTGTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| 3UTR CCA 72 bp | CCTCCTGTACTGTTTTCCACTAACTATGGAACATCCTaGGCCTACCTAGTAAGAGAAGATTCTGACAAAATT | + |
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Preference number: 3 (lower is better) Translates to: PPVLFSTNYGTS*AYLVREDSDKI Trigger: AATTTTGTCAGAATCTTCTCTTACTAGGTAGGCCCAGGATGTTCCATAGTTAGTGGAAAACAGTACAGGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CCA 90 bp | AGAGCTGTAGCTGACAGTAGGGCTGCATACCAACATCTTGAGTTCCCTTCTTCCTGGAGTTGTTCCCACTaGGGCAGCATCGGCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: RAVADSRAAYQHLEFPSSWSCSH*GSIGTA Trigger: TGCTGTGCCGATGCTGCCCCAGTGGGAACAACTCCA...GGAAGAAGGGAACTCAAGATGTTGGTATGCAGCCCTACTGTCAGCTACAGCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170062.2 |
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| CDS-3UTR GCA 90 bp | AGAGCTGTAGCTGACAGTAGGGCTGCATACCAACATCTTGAGTTCCCTTCTTCCGCAAACACGGGGCACTaGCACACAAACACGGAATCC | + |
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Preference number: 4 (lower is better) Translates to: RAVADSRAAYQHLEFPSSANTGH*HTNTES Trigger: GGATTCCGTGTTTGTGTGGCAGTGCCCCGTGTTTGC...GGAAGAAGGGAACTCAAGATGTTGGTATGCAGCCCTACTGTCAGCTACAGCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170062.2 |
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| 3UTR CAA 72 bp | GTATTGCCAGTGACTTCCTGTGACGGCTCCTGTCTATaGCTTAGCTTCCCTCCACCTCCTGTACTGTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: VLPVTSCDGSCL*LSFPPPPVLFS Trigger: GGAAAACAGTACAGGAGGTGGAGGGAAGCTAAGCAATAGACAGGAGCCGTCACAGGAAGTCACTGGCAATAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CCA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCATGGAGTTGTTCCCACTaGGGCAGCATCGGCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: MYTKQMICLSMSIFPNFSWSCSH*GSIGTA Trigger: TGCTGTGCCGATGCTGCCCCAGTGGGAACAACTCCA...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR GCA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCAGCAAACACGGGGCACTaGCACACAAACACGGAATCC | + |
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Preference number: 4 (lower is better) Translates to: MYTKQMICLSMSIFPNFSANTGH*HTNTES Trigger: GGATTCCGTGTTTGTGTGGCAGTGCCCCGTGTTTGC...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR GCA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCAGAACGCCTTGTTCTCTaGACAGCTGGCTGGGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: MYTKQMICLSMSIFPNFSERLVL*TAGWVS Trigger: ACTCACCCAGCCAGCTGTGCAGAGAACAAGGCGTTC...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR GCA 90 bp | AAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGACTCATAAAAGGCGCCCGCCATaGCTACATAAAACCACACAG | + |
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Preference number: 4 (lower is better) Translates to: KNWEYCYCQIDNGQSGTHKRRPP*LHKTTQ Trigger: CTGTGTGGTTTTATGTAGGCATGGCGGGCGCCTTTT...ATGAGTCCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CCA 90 bp | AAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGACTCATTGTTCTCTGCACAGCTaGCTGGGTGAGTGTAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: KNWEYCYCQIDNGQSGTHCSLHS*LGECSR Trigger: TCTACTACACTCACCCAGCCAGCTGTGCAGAGAACA...ATGAGTCCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR TCA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCACAGACTGCTGTCCACTaGCTTTTCATCTCACGAGAA | + |
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Preference number: 4 (lower is better) Translates to: MYTKQMICLSMSIFPNFSQTAVH*LFISRE Trigger: TTCTCGTGAGATGAAAAGTCAGTGGACAGCAGTCTG...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CCA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCACTTGGTTGTGATTCCTaGATCTTGGGCAGAATGGAC | + |
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Preference number: 4 (lower is better) Translates to: MYTKQMICLSMSIFPNFSLGCDS*ILGRMD Trigger: GTCCATTCTGCCCAAGATCCAGGAATCACAACCAAG...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CCA 90 bp | CTTTACAAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGCAAGGCCAATCCAACTaGAAGAGATTTTCACCCAGA | + |
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Preference number: 4 (lower is better) Translates to: LYKNWEYCYCQIDNGQSGQGQSN*KRFSPR Trigger: TCTGGGTGAAAATCTCTTCCAGTTGGATTGGCCTTG...CCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTTGTAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR TCA 90 bp | AAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGACTCATAAGCCAAGAAGAGCATaGAGTGAAAGAAGGAGTAAC | + |
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Preference number: 4 (lower is better) Translates to: KNWEYCYCQIDNGQSGTHKPRRA*SERRSN Trigger: GTTACTCCTTCTTTCACTTCATGCTCTTCTTGGCTT...ATGAGTCCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR TCA 90 bp | AAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGACTCATCATCATGATGTAAAGTaGAGCCAAGAAGAGCATGAA | + |
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Preference number: 4 (lower is better) Translates to: KNWEYCYCQIDNGQSGTHHHDVK*SQEEHE Trigger: TTCATGCTCTTCTTGGCTTCACTTTACATCATGATG...ATGAGTCCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR GCA 90 bp | CTTTACAAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGTTCTGGGATGAAGAATaGGCCAATGATAATTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: LYKNWEYCYCQIDNGQSGFWDEE*ANDNCN Trigger: GTTGCAATTATCATTGGCGCATTCTTCATCCCAGAA...CCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTTGTAAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR GCA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCAGATTTTCACCCAGACTaGTGTCCACTGACTTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: MYTKQMICLSMSIFPNFSDFHPD*CPLTFH Trigger: ATGAAAAGTCAGTGGACAGCAGTCTGGGTGAAAATC...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR GCA 90 bp | CTTTACAAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGTGCGCCAATGATAATTaGAACTGCTGTAGCAAATTT | + |
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Preference number: 4 (lower is better) Translates to: LYKNWEYCYCQIDNGQSGCANDN*NCCSKF Trigger: AAATTTGCTACAGCAGTTGCAATTATCATTGGCGCA...CCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTTGTAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR GCA 90 bp | AAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGACTCATTCAGTAGACTTGGATTaGAATTTGTTTCTGGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: KNWEYCYCQIDNGQSGTHSVDLD*NLFLVH Trigger: ATGAACCAGAAACAAATTGCAATCCAAGTCTACTGA...ATGAGTCCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CCA 90 bp | CTTTACAAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGATTGCAATTTGTTTCTaGTTCATTGGTCATAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LYKNWEYCYCQIDNGQSGIAICF*FIGHSR Trigger: TCTGCTATGACCAATGAACCAGAAACAAATTGCAAT...CCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTTGTAAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS CCA 90 bp | GTGGTGCCACTAGTGTCCACACGTACAGCACAAGGCCAATCCAACTaGAAGAGATTTTCACCCAGACTGCTGTCCACTGACTTTTCATCT | + |
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Preference number: 5 (lower is better) Translates to: VVPLVSTRTAQGQSN*KRFSPRLLSTDFSS Trigger: AGATGAAAAGTCAGTGGACAGCAGTCTGGGTGAAAATCTCTTCCAGTTGGATTGGCCTTGTGCTGTACGTGTGGACACTAGTGGCACCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS CCA 90 bp | GTAATTACTGACGACTGTAACAAGCCAGACCTTGGTTGTGATTCCTaGATCTTGGGCAGAATGGACATTACTGAGGCGCCAATGCAGAGG | + |
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Preference number: 5 (lower is better) Translates to: VITDDCNKPDLGCDS*ILGRMDITEAPMQR Trigger: CCTCTGCATTGGCGCCTCAGTAATGTCCATTCTGCCCAAGATCCAGGAATCACAACCAAGGTCTGGCTTGTTACAGTCGTCAGTAATTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS TCA 90 bp | AGGCCAATCCAACTGGAAGAGATTTTCACCCAGACTGCTGTCCACTaGCTTTTCATCTCACGAGAAGGCTCATACCTGTACCAATTGGTG | + |
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Preference number: 5 (lower is better) Translates to: RPIQLEEIFTQTAVH*LFISREGSYLYQLV Trigger: CACCAATTGGTACAGGTATGAGCCTTCTCGTGAGATGAAAAGTCAGTGGACAGCAGTCTGGGTGAAAATCTCTTCCAGTTGGATTGGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS GCA 90 bp | GTACAGCACAAGGCCAATCCAACTGGAAGAGATTTTCACCCAGACTaGTGTCCACTGACTTTTCATCTCACGAGAAGGCTCATACCTGTA | + |
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Preference number: 5 (lower is better) Translates to: VQHKANPTGRDFHPD*CPLTFHLTRRLIPV Trigger: TACAGGTATGAGCCTTCTCGTGAGATGAAAAGTCAGTGGACAGCAGTCTGGGTGAAAATCTCTTCCAGTTGGATTGGCCTTGTGCTGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS GCA 90 bp | AAAAGTGCCTTCTGGGATGAAGAATGCGCCAATGATAATTGCAACTaGTGTAGCAAATTTAAAGAACCAGAATCCATTGTGGACTGCCGC | + |
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Preference number: 5 (lower is better) Translates to: KSAFWDEECANDNCN*CSKFKEPESIVDCR Trigger: GCGGCAGTCCACAATGGATTCTGGTTCTTTAAATTTGCTACAGCAGTTGCAATTATCATTGGCGCATTCTTCATCCCAGAAGGCACTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020027.11 ENSMUST00000169122.8 |
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| CDS-3UTR CAA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCAACACTGATGAACGCCTaGTTCTCTGCACAGCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: MYTKQMICLSMSIFPNFSTLMNA*FSAQLA Trigger: AGCCAGCTGTGCAGAGAACAAGGCGTTCATCAGTGT...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS CCA 90 bp | ATAATTGCAACTGCTGTAGCAAATTTAAAGAACCAGAATCCATTGTaGACTGCCGCTCTAGGGTCACTGCTGCTTTTTACCTTGATCATT | + |
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Preference number: 5 (lower is better) Translates to: IIATAVANLKNQNPL*TAALGSLLLFTLII Trigger: AATGATCAAGGTAAAAAGCAGCAGTGACCCTAGAGCGGCAGTCCACAATGGATTCTGGTTCTTTAAATTTGCTACAGCAGTTGCAATTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020027.11 ENSMUST00000169122.8 |
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| CDS-3UTR CAA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCAATGCAGAGGAGCATGTaGACACTGATGAACGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: MYTKQMICLSMSIFPNFSMQRSM*TLMNAL Trigger: CAAGGCGTTCATCAGTGTCAACATGCTCCTCTGCAT...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CAA 90 bp | AAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGACTCATGTAACAAGCCAGACCTaGGTTGTGATTCCTGGATCT | + |
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Preference number: 5 (lower is better) Translates to: KNWEYCYCQIDNGQSGTHVTSQT*VVIPGS Trigger: AGATCCAGGAATCACAACCAAGGTCTGGCTTGTTAC...ATGAGTCCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CAA 90 bp | TGTAAAAGTGCCTTCTGGGATGAAGAATGCGCCAATGATAATTGCAACTGCTGTAGGAATCTTATTCAGTaGTTCTTCCATTCCTGGTAT | + |
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Preference number: 5 (lower is better) Translates to: CKSAFWDEECANDNCNCCRNLIQ*FFHSWY Trigger: ATACCAGGAATGGAAGAACAACTGAATAAGATTCCT...ACAGCAGTTGCAATTATCATTGGCGCATTCTTCATCCCAGAAGGCACTTTTACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170062.2 |
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| CDS-3UTR CAA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCAAAGTCCTATAATTCCTaGAGGATGCCACCACTGAAC | + |
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Preference number: 5 (lower is better) Translates to: MYTKQMICLSMSIFPNFSKSYNS*RMPPLN Trigger: GTTCAGTGGTGGCATCCTCAAGGAATTATAGGACTT...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS GCA 90 bp | TACATAAAACCACACAGTTGTAAAAGTGCCTTCTGGGATGAAGAATaGGCCAATGATAATTGCAACTGCTGTAGCAAATTTAAAGAACCA | + |
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Preference number: 5 (lower is better) Translates to: YIKPHSCKSAFWDEE*ANDNCNCCSKFKEP Trigger: TGGTTCTTTAAATTTGCTACAGCAGTTGCAATTATCATTGGCGCATTCTTCATCCCAGAAGGCACTTTTACAACTGTGTGGTTTTATGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CAA 90 bp | AAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGACTCATCTGCTGCTTTTTACCTaGATCATTAGTAAAGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: KNWEYCYCQIDNGQSGTHLLLFT*IISKER Trigger: CCTCTCTTTACTAATGATCAAGGTAAAAAGCAGCAG...ATGAGTCCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CAA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCACTGCATACCAACATCTaGAGTTCCCTTCTTCCATTT | + |
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Preference number: 5 (lower is better) Translates to: MYTKQMICLSMSIFPNFSLHTNI*SSLLPF Trigger: AAATGGAAGAAGGGAACTCAAGATGTTGGTATGCAG...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CAA 90 bp | ACTTTACAAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGTTTGTTTCTGGTTCATaGGTCATAGCAGACCATGTC | + |
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Preference number: 5 (lower is better) Translates to: TLQKLGILLLSNRQWPKWFVSGS*VIADHV Trigger: GACATGGTCTGCTATGACCAATGAACCAGAAACAAA...CCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTTGTAAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CAA 90 bp | AAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGACTCATCTCAGTAGACTTGGATaGCAATTTGTTTCTGGTTCA | + |
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Preference number: 5 (lower is better) Translates to: KNWEYCYCQIDNGQSGTHLSRLG*QFVSGS Trigger: TGAACCAGAAACAAATTGCAATCCAAGTCTACTGAG...ATGAGTCCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CAA 90 bp | CTTTACAAAAATTGGGAATACTGTTACTGTCAAATAGACAATGGCCAAAGTGGGCATCCTCTATCAATGTaGACTCATCACTTGTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: LYKNWEYCYCQIDNGQSGHPLSM*THHLLE Trigger: CTCTAACAAGTGATGAGTCAACATTGATAGAGGATG...CCCACTTTGGCCATTGTCTATTTGACAGTAACAGTATTCCCAATTTTTGTAAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS-3UTR CAA 90 bp | ATGTACACAAAGCAGATGATATGCCTATCAATGTCCATTTTTCCCAATTTCTCAAGGAATCTTATTCAGTaGTTCTTCCATTCCTGGTAT | + |
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Preference number: 5 (lower is better) Translates to: MYTKQMICLSMSIFPNFSRNLIQ*FFHSWY Trigger: ATACCAGGAATGGAAGAACAACTGAATAAGATTCCT...TGAGAAATTGGGAAAAATGGACATTGATAGGCATATCATCTGCTTTGTGTACAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS CAA 72 bp | ATGGACATTACTGAGGCGCCAATGCAGAGGAGCATGTaGACACTGATGAACGCCTTGTTCTCTGCACAGCTG | + |
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Preference number: 6 (lower is better) Translates to: MDITEAPMQRSM*TLMNALFSAQL Trigger: CAGCTGTGCAGAGAACAAGGCGTTCATCAGTGTCAACATGCTCCTCTGCATTGGCGCCTCAGTAATGTCCAT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020027.11 ENSMUST00000169122.8 |
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| CDS GCA 72 bp | GAGGAGCATGTTGACACTGATGAACGCCTTGTTCTCTaGACAGCTGGCTGGGTGAGTGTAGTAGACAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: EEHVDTDERLVL*TAGWVSVVDKE Trigger: TTCTTTGTCTACTACACTCACCCAGCCAGCTGTGCAGAGAACAAGGCGTTCATCAGTGTCAACATGCTCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020027.11 ENSMUST00000169122.8 |
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| CDS CCA 72 bp | GTAACAAGCCAGACCTTGGTTGTGATTCCTGGATCTTaGGCAGAATGGACATTACTGAGGCGCCAATGCAGA | + |
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Preference number: 6 (lower is better) Translates to: VTSQTLVVIPGS*AEWTLLRRQCR Trigger: TCTGCATTGGCGCCTCAGTAATGTCCATTCTGCCCAAGATCCAGGAATCACAACCAAGGTCTGGCTTGTTAC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS CCA 72 bp | TTGAGGATGCCACCACTGAACAGACTGCCCGTCCTTTaGAATAGGCCTTGTGGTATTGAAGCCAATGATGCT | + |
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Preference number: 6 (lower is better) Translates to: LRMPPLNRLPVL*NRPCGIEANDA Trigger: AGCATCATTGGCTTCAATACCACAAGGCCTATTCCAAAGGACGGGCAGTCTGTTCAGTGGTGGCATCCTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS CCA 72 bp | TACGTGACTCCATCCCTCTCGTTATCTACAGCTCGGTaGATGCCATCACCATCATCTAGTGATCCGTCACTT | + |
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Preference number: 6 (lower is better) Translates to: YVTPSLSLSTAR*MPSPSSSDPSL Trigger: AAGTGACGGATCACTAGATGATGGTGATGGCATCCACCGAGCTGTAGATAACGAGAGGGATGGAGTCACGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS CAA 72 bp | TGTAACAAGCCAGACCTTGGTTGTGATTCCTGGATCTaGGGCAGAATGGACATTACTGAGGCGCCAATGCAG | + |
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Preference number: 6 (lower is better) Translates to: CNKPDLGCDSWI*GRMDITEAPMQ Trigger: CTGCATTGGCGCCTCAGTAATGTCCATTCTGCCCAAGATCCAGGAATCACAACCAAGGTCTGGCTTGTTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS CAA 72 bp | CACACACAGCAGGAAAAGAACAAGTCCTATAATTCCTaGAGGATGCCACCACTGAACAGACTGCCCGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: HTQQEKNKSYNS*RMPPLNRLPVL Trigger: AAGGACGGGCAGTCTGTTCAGTGGTGGCATCCTCAAGGAATTATAGGACTTGTTCTTTTCCTGCTGTGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS TCA 72 bp | CAACTGGAAGAGATTTTCACCCAGACTGCTGTCCACTaGCTTTTCATCTCACGAGAAGGCTCATACCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: QLEEIFTQTAVH*LFISREGSYLY Trigger: GTACAGGTATGAGCCTTCTCGTGAGATGAAAAGTCAGTGGACAGCAGTCTGGGTGAAAATCTCTTCCAGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS CAA 90 bp | CGAATAAAACACACACAGCAGGAAAAGAACAAGTCCTATAATTCCTaGAGGATGCCACCACTGAACAGACTGCCCGTCCTTTGGAATAGG | + |
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Preference number: 6 (lower is better) Translates to: RIKHTQQEKNKSYNS*RMPPLNRLPVLWNR Trigger: CCTATTCCAAAGGACGGGCAGTCTGTTCAGTGGTGGCATCCTCAAGGAATTATAGGACTTGTTCTTTTCCTGCTGTGTGTGTTTTATTCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS GCA 72 bp | TACACAAGCTACACATACTCCGACGAGCAAGAAAAGTaGGTAGATCAATCTAGTCACAGTGGAGTTGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: YTSYTYSDEQEK*VDQSSHSGVVP Trigger: GGGAACAACTCCACTGTGACTAGATTGATCTACGCACTTTTCTTGCTCGTCGGAGTATGTGTAGCTTGTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020027.11 ENSMUST00000169122.8 ENSMUST00000170062.2 |
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| CDS CCA 72 bp | ACTGCTGTAGCAAATTTAAAGAACCAGAATCCATTGTaGACTGCCGCTCTAGGGTCACTGCTGCTTTTTACC | + |
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Preference number: 6 (lower is better) Translates to: TAVANLKNQNPL*TAALGSLLLFT Trigger: GGTAAAAAGCAGCAGTGACCCTAGAGCGGCAGTCCACAATGGATTCTGGTTCTTTAAATTTGCTACAGCAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020027.11 ENSMUST00000169122.8 |
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| CDS CAA 72 bp | GCAACTGCTGTAGCAAATTTAAAGAACCAGAATCCATaGTGGACTGCCGCTCTAGGGTCACTGCTGCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: ATAVANLKNQNP*WTAALGSLLLF Trigger: AAAAAGCAGCAGTGACCCTAGAGCGGCAGTCCACAATGGATTCTGGTTCTTTAAATTTGCTACAGCAGTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020027.11 ENSMUST00000169122.8 |
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| CDS GCA 72 bp | TGTAGCAAATTTAAAGAACCAGAATCCATTGTGGACTaGCGCTCTAGGGTCACTGCTGCTTTTTACCTTGAT | + |
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Preference number: 6 (lower is better) Translates to: CSKFKEPESIVD*RSRVTAAFYLD Trigger: ATCAAGGTAAAAAGCAGCAGTGACCCTAGAGCGGCAGTCCACAATGGATTCTGGTTCTTTAAATTTGCTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020027.11 ENSMUST00000169122.8 |
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| CDS CAA 90 bp | ATGATAATTGCAACTGCTGTAGCAAATTTAAAGAACCAGAATCCATaGTGGACTGCCGCTCTAGGGTCACTGCTGCTTTTTACCTTGATC | + |
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Preference number: 6 (lower is better) Translates to: MIIATAVANLKNQNP*WTAALGSLLLFTLI Trigger: GATCAAGGTAAAAAGCAGCAGTGACCCTAGAGCGGCAGTCCACAATGGATTCTGGTTCTTTAAATTTGCTACAGCAGTTGCAATTATCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020027.11 ENSMUST00000169122.8 |
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| CDS GCA 72 bp | CCACACAGTTGTAAAAGTGCCTTCTGGGATGAAGAATaGGCCAATGATAATTGCAACTGCTGTAGCAAATTT | + |
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Preference number: 6 (lower is better) Translates to: PHSCKSAFWDEE*ANDNCNCCSKF Trigger: AAATTTGCTACAGCAGTTGCAATTATCATTGGCGCATTCTTCATCCCAGAAGGCACTTTTACAACTGTGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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| CDS GCA 72 bp | CCCTTCAGTTGTAAAAGTGCCTTCTGGGATGAAGAATaGGCCAATGATAATTGCAACTGCTGTAGCAAATTT | + |
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Preference number: 6 (lower is better) Translates to: PFSCKSAFWDEE*ANDNCNCCSKF Trigger: AAATTTGCTACAGCAGTTGCAATTATCATTGGCGCATTCTTCATCCCAGAAGGCACTTTTACAACTGAAGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169122.8 |
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| CDS CAA 72 bp | GTGGTATTGAAGCCAATGATGCTCAGTAGACTTGGATaGCAATTTGTTTCTGGTTCATTGGTCATAGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: VVLKPMMLSRLG*QFVSGSLVIAD Trigger: GTCTGCTATGACCAATGAACCAGAAACAAATTGCAATCCAAGTCTACTGAGCATCATTGGCTTCAATACCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020027.11 |
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