Pregenerated sensors for SERHL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058586Ensembl transcript IDs: ENSMUST00000078218.11, ENSMUST00000166427.8, ENSMUST00000168029.8, ENSMUST00000169814.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | ACTCATGCCTGCAGACGTGAAGCTCTTTGGAGTTTCTGTGGCAGCTaGTTCCTCCATGAAAGCCACTGTGGGCTGGCCATACTGGGGACC | + |
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Preference number: 2 (lower is better) Translates to: THACRREALWSFCGS*FLHESHCGLAILGT Trigger: GGTCCCCAGTATGGCCAGCCCACAGTGGCTTTCATGGAGGAACAAGCTGCCACAGAAACTCCAAAGAGCTTCACGTCTGCAGGCATGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169814.2 |
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| 3UTR-3UTR GCA 90 bp | ACCCCAGGCCCTTTGTCAGAGTCACAGATAAGGCCAGAATCTTCTTTTCCCTGCCTGCCTCTCTTGGTCTaGAAGACTCCCGCCCACTCC | + |
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Preference number: 2 (lower is better) Translates to: TPGPLSESQIRPESSFPCLPLLV*KTPAHS Trigger: GGAGTGGGCGGGAGTCTTGCAGACCAAGAGAGGCAG...GCAGGGAAAAGAAGATTCTGGCCTTATCTGTGACTCTGACAAAGGGCCTGGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| 3UTR-3UTR CCA 90 bp | GGCTCCACTCATGCCTGCAGACGTGAAGCTCTTTGGAGTTTCTGTGGCAGCTTGAAAGCCACTGTGGGCTaGCCATACTGGGGACCTTGT | + |
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Preference number: 2 (lower is better) Translates to: GSTHACRREALWSFCGSLKATVG*PYWGPC Trigger: ACAAGGTCCCCAGTATGGCCAGCCCACAGTGGCTTT...CAAGCTGCCACAGAAACTCCAAAGAGCTTCACGTCTGCAGGCATGAGTGGAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169814.2 |
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| 3UTR-3UTR GCA 90 bp | AAGATGGGAGATTTTATTTCCACCACTGGTGGCAAGGCCACAGAAGCCTCAGAGCTGCCTCTCTTGGTCTaGAAGACTCCCGCCCACTCC | + |
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Preference number: 2 (lower is better) Translates to: KMGDFISTTGGKATEASELPLLV*KTPAHS Trigger: GGAGTGGGCGGGAGTCTTGCAGACCAAGAGAGGCAG...CTCTGAGGCTTCTGTGGCCTTGCCACCAGTGGTGGAAATAAAATCTCCCATCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| 3UTR-3UTR GCA 90 bp | CGTGAAGCTCTTTGGAGTTTCTGTGGCAGCTTGTTCCTCCATGAAAGCCACTGTTCCCCTTTTGTCAGCTaGCTCTCTCCCTCAACATCT | + |
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Preference number: 2 (lower is better) Translates to: REALWSFCGSLFLHESHCSPFVS*LSPSTS Trigger: AGATGTTGAGGGAGAGAGGCAGCTGACAAAAGGGGA...ACAGTGGCTTTCATGGAGGAACAAGCTGCCACAGAAACTCCAAAGAGCTTCACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169814.2 |
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| 3UTR-3UTR CAA 90 bp | CTCAGAGCCCAGAGGGTCGGCTCCAGCCCTGCTTCCTTAGCATCACCAAAGCTCTCTCTGCTGCCTCTCTaGGTCTGCAAGACTCCCGCC | + |
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Preference number: 3 (lower is better) Translates to: LRAQRVGSSPASLASPKLSLLPL*VCKTPA Trigger: GGCGGGAGTCTTGCAGACCAAGAGAGGCAGCAGAGA...GAGCTTTGGTGATGCTAAGGAAGCAGGGCTGGAGCCGACCCTCTGGGCTCTGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| 3UTR-3UTR CAA 90 bp | GGCTCCAGCCCTGCTTCCTTAGCATCACCAAAGCTCACCAAACACCCCAGGCCCTCTCTGCTGCCTCTCTaGGTCTGCAAGACTCCCGCC | + |
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Preference number: 3 (lower is better) Translates to: GSSPASLASPKLTKHPRPSLLPL*VCKTPA Trigger: GGCGGGAGTCTTGCAGACCAAGAGAGGCAGCAGAGA...GGGCCTGGGGTGTTTGGTGAGCTTTGGTGATGCTAAGGAAGCAGGGCTGGAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| 3UTR GCA 72 bp | CAGAAGCCTCAGAGCCCAGAGGGTCGGCTCCAGCCCTaGTTCCTTAGCATCACCAAAGCTCACCAAACACCC | + |
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Preference number: 3 (lower is better) Translates to: QKPQSPEGRLQP*FLSITKAHQTP Trigger: GGGTGTTTGGTGAGCTTTGGTGATGCTAAGGAAGCAGGGCTGGAGCCGACCCTCTGGGCTCTGAGGCTTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| 3UTR GCA 72 bp | CCTCTGCTGAAGGAGTCTCTGCTGCCTCTCTTGGTCTaGAAGACTCCCGCCCACTCCACCTGTTTTGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: PLLKESLLPLLV*KTPAHSTCFVG Trigger: TCCCACAAAACAGGTGGAGTGGGCGGGAGTCTTGCAGACCAAGAGAGGCAGCAGAGACTCCTTCAGCAGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| 3UTR TCA 72 bp | AGCTCTTTGGAGTTTCTGTGGCAGCTTGTTCCTCCATaGAAGCCACTGTGGGCTGGCCATACTGGGGACCTT | + |
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Preference number: 3 (lower is better) Translates to: SSLEFLWQLVPP*KPLWAGHTGDL Trigger: AAGGTCCCCAGTATGGCCAGCCCACAGTGGCTTTCATGGAGGAACAAGCTGCCACAGAAACTCCAAAGAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169814.2 |
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| 3UTR-3UTR CAA 90 bp | ATTTTATTTCCACCACTGGTGGCAAGGCCACAGAAGCCTCAGAGCCCAGAGGGTAACACCCCAGGCCCTTaGTCAGAGTCACAGATAAGG | + |
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Preference number: 3 (lower is better) Translates to: ILFPPLVARPQKPQSPEGNTPGP*SESQIR Trigger: CCTTATCTGTGACTCTGACAAAGGGCCTGGGGTGTT...ACCCTCTGGGCTCTGAGGCTTCTGTGGCCTTGCCACCAGTGGTGGAAATAAAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| 3UTR GCA 72 bp | ACGAAGTCAAAGCTGTTCTCTGGCTCCACTCATGCCTaGAGACGTGAAGCTCTTTGGAGTTTCTGTGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: TKSKLFSGSTHA*RREALWSFCGS Trigger: GCTGCCACAGAAACTCCAAAGAGCTTCACGTCTGCAGGCATGAGTGGAGCCAGAGAACAGCTTTGACTTCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169814.2 |
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| 3UTR TCA 72 bp | AAAGCTGTTCTCTGGCTCCACTCATGCCTGCAGACGTaGAGCTCTTTGGAGTTTCTGTGGCAGCTTGTTCCT | + |
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Preference number: 3 (lower is better) Translates to: KAVLWLHSCLQT*SSLEFLWQLVP Trigger: AGGAACAAGCTGCCACAGAAACTCCAAAGAGCTTCACGTCTGCAGGCATGAGTGGAGCCAGAGAACAGCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169814.2 |
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| CDS-3UTR TCA 90 bp | CACTGGTGGCAAGGCCACAGAAGCCTCAGAGCCCAGAGGGTCGGCTCCAGCCCTGGGGAAGAAGAGGAATaGGCCTGTCAAAGGAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: HWWQGHRSLRAQRVGSSPGEEEE*ACQRSW Trigger: CCAACTCCTTTGACAGGCTCATTCCTCTTCTTCCCC...AGGGCTGGAGCCGACCCTCTGGGCTCTGAGGCTTCTGTGGCCTTGCCACCAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR TCA 90 bp | CACCACTGGTGGCAAGGCCACAGAAGCCTCAGAGCCCAGAGGGTCGGCTCCAGCACATCTCCTCTGGGCTaGCAGCTCTCAGGGACTTTT | + |
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Preference number: 4 (lower is better) Translates to: HHWWQGHRSLRAQRVGSSTSPLG*QLSGTF Trigger: AAAAGTCCCTGAGAGCTGTCAGCCCAGAGGAGATGT...GCTGGAGCCGACCCTCTGGGCTCTGAGGCTTCTGTGGCCTTGCCACCAGTGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR CCA 90 bp | CAGAGCCCAGAGGGTCGGCTCCAGCCCTGCTTCCTTAGCATCACCAAAGCTCACCTGCAACATCTCCTCTaGGCTGACAGCTCTCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: QSPEGRLQPCFLSITKAHLQHLL*ADSSQG Trigger: TCCCTGAGAGCTGTCAGCCCAGAGGAGATGTTGCAG...GTGAGCTTTGGTGATGCTAAGGAAGCAGGGCTGGAGCCGACCCTCTGGGCTCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR TCA 90 bp | CCTCAGAGCCCAGAGGGTCGGCTCCAGCCCTGCTTCCTTAGCATCACCAAAGCTACATCTCCTCTGGGCTaGCAGCTCTCAGGGACTTTT | + |
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Preference number: 4 (lower is better) Translates to: PQSPEGRLQPCFLSITKATSPLG*QLSGTF Trigger: AAAAGTCCCTGAGAGCTGTCAGCCCAGAGGAGATGT...AGCTTTGGTGATGCTAAGGAAGCAGGGCTGGAGCCGACCCTCTGGGCTCTGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR CCA 90 bp | CCTCAGAGCCCAGAGGGTCGGCTCCAGCCCTGCTTCCTTAGCATCACCAAAGCTGGGACTTCCACAAACTaGAACCGCTCCTTTAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: PQSPEGRLQPCFLSITKAGTSTN*NRSFRV Trigger: CACCCTAAAGGAGCGGTTCCAGTTTGTGGAAGTCCC...AGCTTTGGTGATGCTAAGGAAGCAGGGCTGGAGCCGACCCTCTGGGCTCTGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR CCA 90 bp | ACCACTGGTGGCAAGGCCACAGAAGCCTCAGAGCCCAGAGGGTCGGCTCCAGCCCAGTCTTTATCCAAGTaGCTGTTGTTATTCAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: TTGGKATEASEPRGSAPAQSLSK*LLLFRN Trigger: GTTCCTGAATAACAACAGCCACTTGGATAAAGACTG...GGCTGGAGCCGACCCTCTGGGCTCTGAGGCTTCTGTGGCCTTGCCACCAGTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR CCA 90 bp | CACTGGTGGCAAGGCCACAGAAGCCTCAGAGCCCAGAGGGTCGGCTCCAGCCCTCAGTCTTTATCCAAGTaGCTGTTGTTATTCAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: HWWQGHRSLRAQRVGSSPQSLSK*LLLFRN Trigger: GTTCCTGAATAACAACAGCCACTTGGATAAAGACTG...AGGGCTGGAGCCGACCCTCTGGGCTCTGAGGCTTCTGTGGCCTTGCCACCAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| 3UTR CAA 72 bp | ACTGTGGGCTGGCCATACTGGGGACCTTGTCCCCTTTaGTCAGCTGCCTCTCTCCCTCAACATCTCTTAGCT | + |
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Preference number: 4 (lower is better) Translates to: TVGWPYWGPCPL*SAASLPQHLLA Trigger: AGCTAAGAGATGTTGAGGGAGAGAGGCAGCTGACAAAAGGGGACAAGGTCCCCAGTATGGCCAGCCCACAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169814.2 |
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| CDS-3UTR GCA 90 bp | AGATGGGAGATTTTATTTCCACCACTGGTGGCAAGGCCACAGAAGCCTCAGAGCATTAGCACGCTGGCCTaGAGGCTCTTCGCAGAGTGC | + |
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Preference number: 4 (lower is better) Translates to: RWEILFPPLVARPQKPQSISTLA*RLFAEC Trigger: GCACTCTGCGAAGAGCCTGCAGGCCAGCGTGCTAAT...GCTCTGAGGCTTCTGTGGCCTTGCCACCAGTGGTGGAAATAAAATCTCCCATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR GCA 90 bp | ACCCCAGGCCCTTTGTCAGAGTCACAGATAAGGCCAGAATCTTCTTTTCCCTGCATTAGCACGCTGGCCTaGAGGCTCTTCGCAGAGTGC | + |
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Preference number: 4 (lower is better) Translates to: TPGPLSESQIRPESSFPCISTLA*RLFAEC Trigger: GCACTCTGCGAAGAGCCTGCAGGCCAGCGTGCTAAT...GCAGGGAAAAGAAGATTCTGGCCTTATCTGTGACTCTGACAAAGGGCCTGGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR GCA 90 bp | CAGAGCCCAGAGGGTCGGCTCCAGCCCTGCTTCCTTAGCATCACCAAAGCTCACAACTTCAACTCTGAGTaGAAACCTGCAAGGCAGATC | + |
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Preference number: 4 (lower is better) Translates to: QSPEGRLQPCFLSITKAHNFNSE*KPARQI Trigger: GATCTGCCTTGCAGGTTTGCACTCAGAGTTGAAGTT...GTGAGCTTTGGTGATGCTAAGGAAGCAGGGCTGGAGCCGACCCTCTGGGCTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166427.8 |
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| CDS-3UTR CCA 90 bp | CAGCCCTGCTTCCTTAGCATCACCAAAGCTCACCAAACACCCCAGGCCCTTTGTGGGACTTCCACAAACTaGAACCGCTCCTTTAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: QPCFLSITKAHQTPQALCGTSTN*NRSFRV Trigger: CACCCTAAAGGAGCGGTTCCAGTTTGTGGAAGTCCC...ACAAAGGGCCTGGGGTGTTTGGTGAGCTTTGGTGATGCTAAGGAAGCAGGGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR CCA 90 bp | TGCTTCCTTAGCATCACCAAAGCTCACCAAACACCCCAGGCCCTTTGTCAGAGTCTGCAACATCTCCTCTaGGCTGACAGCTCTCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: CFLSITKAHQTPQALCQSLQHLL*ADSSQG Trigger: TCCCTGAGAGCTGTCAGCCCAGAGGAGATGTTGCAG...ACTCTGACAAAGGGCCTGGGGTGTTTGGTGAGCTTTGGTGATGCTAAGGAAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR CCA 90 bp | AGCTGTTCTCTGGCTCCACTCATGCCTGCAGACGTGAAGCTCTTTGGAGTTTCTCTGCAACATCTCCTCTaGGCTGACAGCTCTCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: SCSLAPLMPADVKLFGVSLQHLL*ADSSQG Trigger: TCCCTGAGAGCTGTCAGCCCAGAGGAGATGTTGCAG...AGAAACTCCAAAGAGCTTCACGTCTGCAGGCATGAGTGGAGCCAGAGAACAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169814.2 |
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| 3UTR CAA 72 bp | TGCAGACGTGAAGCTCTTTGGAGTTTCTGTGGCAGCTaGTTCCTCCATGAAAGCCACTGTGGGCTGGCCATA | + |
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Preference number: 4 (lower is better) Translates to: CRREALWSFCGS*FLHESHCGLAI Trigger: TATGGCCAGCCCACAGTGGCTTTCATGGAGGAACAAGCTGCCACAGAAACTCCAAAGAGCTTCACGTCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169814.2 |
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| CDS-3UTR TCA 90 bp | TGCTTCCTTAGCATCACCAAAGCTCACCAAACACCCCAGGCCCTTTGTCAGAGTGGGGAAGAAGAGGAATaGGCCTGTCAAAGGAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: CFLSITKAHQTPQALCQSGEEEE*ACQRSW Trigger: CCAACTCCTTTGACAGGCTCATTCCTCTTCTTCCCC...ACTCTGACAAAGGGCCTGGGGTGTTTGGTGAGCTTTGGTGATGCTAAGGAAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS-3UTR TCA 90 bp | CATCACCAAAGCTCACCAAACACCCCAGGCCCTTTGTCAGAGTCACAGATAAGGAGCCAACTTCAACTCTaGGTGCAAACCTGCAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: HHQSSPNTPGPLSESQIRSQLQL*VQTCKA Trigger: TGCCTTGCAGGTTTGCACTCAGAGTTGAAGTTGGCT...CCTTATCTGTGACTCTGACAAAGGGCCTGGGGTGTTTGGTGAGCTTTGGTGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166427.8 |
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| CDS-3UTR TCA 90 bp | CTTTTGTCAGCTGCCTCTCTCCCTCAACATCTCTTAGCTTCTTCCAGTTTCATTACATCTCCTCTGGGCTaGCAGCTCTCAGGGACTTTT | + |
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Preference number: 4 (lower is better) Translates to: LLSAASLPQHLLASSSFITSPLG*QLSGTF Trigger: AAAAGTCCCTGAGAGCTGTCAGCCCAGAGGAGATGT...AATGAAACTGGAAGAAGCTAAGAGATGTTGAGGGAGAGAGGCAGCTGACAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169814.2 |
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| CDS TCA 90 bp | GTGCCACCCACACAGCCACCAAAACTGTGGCCCAGGAGGGTGAACTaGTTCCACTTAAAGGCTGTTGCCACCCTTCGGACCTCACTCACA | + |
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Preference number: 5 (lower is better) Translates to: VPPTQPPKLWPRRVN*FHLKAVATLRTSLT Trigger: TGTGAGTGAGGTCCGAAGGGTGGCAACAGCCTTTAAGTGGAATCAGTTCACCCTCCTGGGCCACAGTTTTGGTGGCTGTGTGGGTGGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 ENSMUST00000168029.8 |
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| CDS GCA 90 bp | GCACGCTGGCCTGCAGGCTCTTCGCAGAGTGCACGAACATCTCCTTaGTTACGAAGTCAAAGCTGTTCTCTGGCCAAGAGATCCTCCGGT | + |
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Preference number: 5 (lower is better) Translates to: ARWPAGSSQSARTSP*LRSQSCSLAKRSSG Trigger: ACCGGAGGATCTCTTGGCCAGAGAACAGCTTTGACTTCGTAAGCAAGGAGATGTTCGTGCACTCTGCGAAGAGCCTGCAGGCCAGCGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS TCA 90 bp | AGTGGCTGTTGTTATTCAGGAACCCCTGCAACATCTCCTCTGGGCTaGCAGCTCTCAGGGACTTTTTCTGGGAGGCCTCCACCTGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: SGCCYSGTPATSPLG*QLSGTFSGRPPPEV Trigger: CACTTCAGGTGGAGGCCTCCCAGAAAAAGTCCCTGAGAGCTGTCAGCCCAGAGGAGATGTTGCAGGGGTTCCTGAATAACAACAGCCACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS TCA 90 bp | TCAGCACCAGACCTGCGTCCACCTTCGTGGTTCCTCTCTGTAGGATaGGTTCCCCACAGTCTTTATCCAAGTGGCTGTTGTTATTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: SAPDLRPPSWFLSVG*VPHSLYPSGCCYSG Trigger: TCCTGAATAACAACAGCCACTTGGATAAAGACTGTGGGGAACTCATCCTACAGAGAGGAACCACGAAGGTGGACGCAGGTCTGGTGCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 ENSMUST00000169814.2 |
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| CDS GCA 72 bp | GTTTGTCCACCATCTCAGGGAACATGCAGGCGAACGTaGCACCCACACAGCCACCAAAACTGTGGCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: VCPPSQGTCRRT*HPHSHQNCGPG Trigger: TCCTGGGCCACAGTTTTGGTGGCTGTGTGGGTGGCACGTTCGCCTGCATGTTCCCTGAGATGGTGGACAAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 ENSMUST00000168029.8 |
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| CDS TCA 72 bp | TGTTATTCAGGAACCCCTGCAACATCTCCTCTGGGCTaGCAGCTCTCAGGGACTTTTTCTGGGAGGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: CYSGTPATSPLG*QLSGTFSGRPP Trigger: TGGAGGCCTCCCAGAAAAAGTCCCTGAGAGCTGTCAGCCCAGAGGAGATGTTGCAGGGGTTCCTGAATAACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 ENSMUST00000169814.2 |
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| CDS TCA 72 bp | GACCTGCGTCCACCTTCGTGGTTCCTCTCTGTAGGATaGGTTCCCCACAGTCTTTATCCAAGTGGCTGTTGT | + |
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Preference number: 6 (lower is better) Translates to: DLRPPSWFLSVG*VPHSLYPSGCC Trigger: ACAACAGCCACTTGGATAAAGACTGTGGGGAACTCATCCTACAGAGAGGAACCACGAAGGTGGACGCAGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 ENSMUST00000169814.2 |
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| CDS GCA 72 bp | CCTGCAGGCTCTTCGCAGAGTGCACGAACATCTCCTTaGTTACGAAGTCAAAGCTGTTCTCTGGCCAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: PAGSSQSARTSP*LRSQSCSLAKR Trigger: TCTCTTGGCCAGAGAACAGCTTTGACTTCGTAAGCAAGGAGATGTTCGTGCACTCTGCGAAGAGCCTGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 |
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| CDS CAA 90 bp | CCTCTCTGTAGGATGAGTTCCCCACAGTCTTTATCCAAGTGGCTGTaGTTATTCAGGAACCCCTGCAACATCTCCTCTGGGCTGACAGCT | + |
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Preference number: 6 (lower is better) Translates to: PLCRMSSPQSLSKWL*LFRNPCNISSGLTA Trigger: AGCTGTCAGCCCAGAGGAGATGTTGCAGGGGTTCCTGAATAACAACAGCCACTTGGATAAAGACTGTGGGGAACTCATCCTACAGAGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 ENSMUST00000169814.2 |
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| CDS CCA 72 bp | CTCTGTAGGATGAGTTCCCCACAGTCTTTATCCAAGTaGCTGTTGTTATTCAGGAACCCCTGCAACATCTCC | + |
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Preference number: 6 (lower is better) Translates to: LCRMSSPQSLSK*LLLFRNPCNIS Trigger: GGAGATGTTGCAGGGGTTCCTGAATAACAACAGCCACTTGGATAAAGACTGTGGGGAACTCATCCTACAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078218.11 ENSMUST00000166427.8 ENSMUST00000169814.2 |
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