Pregenerated sensors for SERF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021643

Ensembl transcript IDs: ENSMUST00000129014.2, ENSMUST00000132053.8

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	TCCTACCACCATGAACCGAGCCTCTCTGTTCTGTTCTCCTTTCTATaGAGGAGTGAAATCCTCCAAAACCATGAGACAATTTGTTCCTCC	+
Preference number: 1 (lower is better) Translates to: SYHHEPSLSVLFSFL*RSEILQNHETICSS Trigger: GGAGGAACAAATTGTCTCATGGTTTTGGAGGATTTCACTCCTTCATAGAAAGGAGAACAGAACAGAGAGGCTCGGTTCATGGTGGTAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129014.2
3UTR-3UTR CCA 90 bp	CGGAGAGTTACGATTTATTTCGTGTGCTTTGTAGGGGAGGAGAGAAAGAGCAGGAAAGGCTCGACCAGATaGCAAGTTTCACTTCCAGCC	+
Preference number: 2 (lower is better) Translates to: RRVTIYFVCFVGEERKSRKGSTR*QVSLPA Trigger: GGCTGGAAGTGAAACTTGCCATCTGGTCGAGCCTTT...CCTGCTCTTTCTCTCCTCCCCTACAAAGCACACGAAATAAATCGTAACTCTCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132053.8
3UTR TCA 72 bp	CTCACTGGAAGAAGTAGGCCATTGGGGACAGGACTTTaGCTGTTAACCAGGTTCCTGTCCAGGCATGAATTT	+
Preference number: 3 (lower is better) Translates to: LTGRSRPLGTGL*LLTRFLSRHEF Trigger: AAATTCATGCCTGGACAGGAACCTGGTTAACAGTCAAAGTCCTGTCCCCAATGGCCTACTTCTTCCAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129014.2

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