RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SEPTIN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022456

Ensembl transcript IDs: ENSMUST00000023095.14, ENSMUST00000116423.3, ENSMUST00000230365.2, ENSMUST00000230418.2, ENSMUST00000230507.2, ENSMUST00000238416.3, ENSMUST00000239048.2

Found 458 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGAGCTCCCACAGCCCACCACAGGCTAGCTCAGCCACCAGTCCATaGAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAG +
Preference number: 1 (lower is better)
Translates to: LSSHSPPQASSATSP*RILAAPVCGWVRSK
Trigger: CTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATGGACTGGTGGCTGAGCTAGCCTGTGGTGGGCTGTGGGAGCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 90 bp GGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTaGAAATACAGGGAAGGCGGGCACAGAAAGCAGTGGTTTGCAGCG +
Preference number: 1 (lower is better)
Translates to: GEGEEKSGRGSNQPA*KYREGGHRKQWFAA
Trigger: CGCTGCAAACCACTGCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 90 bp GCCCACAAGTCACCAGCCTTTGAGCAAGTTGTGTCCAGGTGGAGATaGCAGGTGGGGTGGCTGAGGGAGGGTTCTAGAAAGACACAGTGT +
Preference number: 1 (lower is better)
Translates to: AHKSPAFEQVVSRWR*QVGWLREGSRKTQC
Trigger: ACACTGTGTCTTTCTAGAACCCTCCCTCAGCCACCCCACCTGCCATCTCCACCTGGACACAACTTGCTCAAAGGCTGGTGACTTGTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 90 bp GCGACCACCTGTGGTCAGGCTAATGCATTGCTCACATTAACAGGGTaGGGGATGGGAGTAGGAATAGTCAGGGGAGGTGGGAAGAGATCC +
Preference number: 1 (lower is better)
Translates to: ATTCGQANALLTLTG*GMGVGIVRGGGKRS
Trigger: GGATCTCTTCCCACCTCCCCTGACTATTCCTACTCCCATCCCCCACCCTGTTAATGTGAGCAATGCATTAGCCTGACCACAGGTGGTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR TCA 90 bp CCGGCAGCCGGCAGCAGACACATAAAACAGCTTCTCCAGGGAGAGTaGGACCACAGCTTAGTGGAGACAGGCAGCATTCTCCTACTTAGA +
Preference number: 1 (lower is better)
Translates to: PAAGSRHIKQLLQGE*DHSLVETGSILLLR
Trigger: TCTAAGTAGGAGAATGCTGCCTGTCTCCACTAAGCTGTGGTCTCACTCTCCCTGGAGAAGCTGTTTTATGTGTCTGCTGCCGGCTGCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR TCA 90 bp TGCATCCCCGAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATaGATGGCCCACAAGTCACCAGCCTTTGAGCAAGTTGTGTCCAGG +
Preference number: 1 (lower is better)
Translates to: CIPEAWASCSFRTCR*MAHKSPAFEQVVSR
Trigger: CCTGGACACAACTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTCGGGGATGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR GCA 90 bp ACCAGCCTGGAAATACAGGGAAGGCGGGCACAGAAAGCAGTGGTTTaGAGCGGTGATGATCCGCTGTTTGACAGTGACCCCAACATAGAC +
Preference number: 1 (lower is better)
Translates to: TSLEIQGRRAQKAVV*SGDDPLFDSDPNID
Trigger: GTCTATGTTGGGGTCACTGTCAAACAGCGGATCATCACCGCTGCAAACCACTGCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 90 bp TGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTaGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCC +
Preference number: 1 (lower is better)
Translates to: WCWQELHSIGRRGVV*LNRGSNCPKAAASP
Trigger: GGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 90 bp TCCCCGAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATGAATaGCCCACAAGTCACCAGCCTTTGAGCAAGTTGTGTCCAGGTGGA +
Preference number: 1 (lower is better)
Translates to: SPRLGPLVPSGLVDE*PTSHQPLSKLCPGG
Trigger: TCCACCTGGACACAACTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTCGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR TCA 90 bp CTAGCCTTCCTCCAGATTACCTCAACTTACAGTGAAAAGTTGTTCTaGGCTCCCACAGCCCACCACAGGCTAGCTCAGCCACCAGTCCAT +
Preference number: 1 (lower is better)
Translates to: LAFLQITSTYSEKLF*APTAHHRLAQPPVH
Trigger: ATGGACTGGTGGCTGAGCTAGCCTGTGGTGGGCTGTGGGAGCTCAGAACAACTTTTCACTGTAAGTTGAGGTAATCTGGAGGAAGGCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR TCA 90 bp TCCCCAAGAAGTCCTAGCCTTCCTCCAGATTACCTCAACTTACAGTaGAAAGTTGTTCTGAGCTCCCACAGCCCACCACAGGCTAGCTCA +
Preference number: 1 (lower is better)
Translates to: SPRSPSLPPDYLNLQ*KVVLSSHSPPQASS
Trigger: TGAGCTAGCCTGTGGTGGGCTGTGGGAGCTCAGAACAACTTTTCACTGTAAGTTGAGGTAATCTGGAGGAAGGCTAGGACTTCTTGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR GCA 90 bp TACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTaGCTGTGGCTCACCTGCTCCCAGCATTATAAATTAAAACCTTCC +
Preference number: 1 (lower is better)
Translates to: YLQPQFVGGSEVRKS*LWLTCSQHYKLKPS
Trigger: GGAAGGTTTTAATTTATAATGCTGGGAGCAGGTGAGCCACAGGCAACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR GCA 90 bp TTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTGCCTGTGGCTCACCTaGTCCCAGCATTATAAATTAAAACCTTCCCCAGACCTCTTGAGT +
Preference number: 1 (lower is better)
Translates to: FVGGSEVRKSCLWLT*SQHYKLKPSPDLLS
Trigger: ACTCAAGAGGTCTGGGGAAGGTTTTAATTTATAATGCTGGGAGCAGGTGAGCCACAGGCAACTCTTTCTTACTTCTGACCCACCCACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR TCA 90 bp CTTACAAAGGACTTTCCAAAGAGGGCAATGAAAATACCTCACCCCTaGGTACACGCATACATACACACACATGCATACACACACACAGGC +
Preference number: 1 (lower is better)
Translates to: LTKDFPKRAMKIPHP*VHAYIHTHAYTHTG
Trigger: GCCTGTGTGTGTGTATGCATGTGTGTGTATGTATGCGTGTACTCAGGGGTGAGGTATTTTCATTGCCCTCTTTGGAAAGTCCTTTGTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR GCA 90 bp CAGAAACTGGCTTTCCTAGTCATCTTCTCTATAACTGAATTCTCTTaGAATCTCGGCATGCCCTGCCCCATGCTTTTACTTAGGATCTTA +
Preference number: 1 (lower is better)
Translates to: QKLAFLVIFSITEFS*NLGMPCPMLLLRIL
Trigger: TAAGATCCTAAGTAAAAGCATGGGGCAGGGCATGCCGAGATTGCAAGAGAATTCAGTTATAGAGAAGATGACTAGGAAAGCCAGTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 90 bp CCGGGAGGTGGCATAGTGGATAGATCAGTTCTAAACAGAATTTTGTaGTATCTTCCCTTTCCTATGGCTAAATGGCTTTCCTTAAAGCAG +
Preference number: 1 (lower is better)
Translates to: PGGGIVDRSVLNRIL*YLPFPMAKWLSLKQ
Trigger: CTGCTTTAAGGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAAAATTCTGTTTAGAACTGATCTATCCACTATGCCACCTCCCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp TTCTCCCTGCAGGGGGAGTTGAGAACGGTTGAGGGTGTGGAGACCGGCAGCCGGGTTCTACACCCAGGCTaGACCGGGAGGTGGCATAGT +
Preference number: 2 (lower is better)
Translates to: FSLQGELRTVEGVETGSRVLHPG*TGRWHS
Trigger: ACTATGCCACCTCCCGGTCCAGCCTGGGTGTAGAAC...CCGGCTGCCGGTCTCCACACCCTCAACCGTTCTCAACTCCCCCTGCAGGGAGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp GTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTGATGGGGGCTTTGCCCTCCGGAGTTGAGAACGGTTaGGGGTGTGGAGACCGGCAG +
Preference number: 2 (lower is better)
Translates to: VAAVRSQTFMHLMGALPSGVENG*GCGDRQ
Trigger: CTGCCGGTCTCCACACCCTCAACCGTTCTCAACTCC...GGAGGGCAAAGCCCCCATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp GCATCCCCGAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATGAATGGCCCGAAGGTGCTGGGAACTaGACCTGGGTCCTCTGCAAG +
Preference number: 2 (lower is better)
Translates to: ASPRLGPLVPSGLVDEWPEGAGN*TWVLCK
Trigger: CTTGCAGAGGACCCAGGTTCAGTTCCCAGCACCTTC...GGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTCGGGGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTGATGGGGGCTTTGCCCTCCGCTGAGAGGAGGTGGTaGCTGGAGGTGGTATCTAGG +
Preference number: 2 (lower is better)
Translates to: VAAVRSQTFMHLMGALPSAERRW*LEVVSR
Trigger: CCTAGATACCACCTCCAGCCACCACCTCCTCTCAGC...GGAGGGCAAAGCCCCCATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GGACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGAATACCAGACAGGCCTaGGGGACAGAGCTGAGAGGA +
Preference number: 2 (lower is better)
Translates to: GRWGGRREIRTRKQPTSLNTRQA*GTELRG
Trigger: TCCTCTCAGCTCTGTCCCCCAGGCCTGTCTGGTATT...CAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GCATCCCCGAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATGAATGGCCCAGATGGCAGGTGGGGTaGCTGAGGGAGGGTTCTAGA +
Preference number: 2 (lower is better)
Translates to: ASPRLGPLVPSGLVDEWPRWQVG*LREGSR
Trigger: TCTAGAACCCTCCCTCAGCCACCCCACCTGCCATCT...GGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTCGGGGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp GACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAGTGAAAAGTTGTTCTaGGCTCCCACAGCCCACCAC +
Preference number: 2 (lower is better)
Translates to: DAGEGEEKSGRGSNQPAWSEKLF*APTAHH
Trigger: GTGGTGGGCTGTGGGAGCTCAGAACAACTTTTCACT...CCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp ACAGTGTATGGGGCAGTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTGATGCCCTGCAGGGGGAGTTaGGAACGGTTGAGGGTGTGG +
Preference number: 2 (lower is better)
Translates to: TVYGAVAAVRSQTFMHLMPCRGS*ERLRVW
Trigger: CCACACCCTCAACCGTTCTCAACTCCCCCTGCAGGG...CATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCACTGCCCCATACACTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GGACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGAGAAAGAGTTGCCTGTaGCTCACCTGCTCCCAGCAT +
Preference number: 2 (lower is better)
Translates to: GRWGGRREIRTRKQPTSLRKSCL*LTCSQH
Trigger: ATGCTGGGAGCAGGTGAGCCACAGGCAACTCTTTCT...CAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp TGGCTGAGGGAGGGTTCTAGAAAGACACAGTGTATGGGGCAGTGGCAGCCGTTCGGAGCAGGGTGGTGCTaGCAGGAACTCCATTCCATT +
Preference number: 2 (lower is better)
Translates to: WLREGSRKTQCMGQWQPFGAGWC*QELHSI
Trigger: AATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCC...GAACGGCTGCCACTGCCCCATACACTGTGTCTTTCTAGAACCCTCCCTCAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp GACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGGAAGTAAGAAAGAGTTaGCTGTGGCTCACCTGCTCC +
Preference number: 2 (lower is better)
Translates to: DAGEGEEKSGRGSNQPAWEVRKS*LWLTCS
Trigger: GGAGCAGGTGAGCCACAGGCAACTCTTTCTTACTTC...CCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp GGGGATGGGAGTAGGAATAGTCAGGGGAGGTGGGAAGAGATCCCTCTTATTGCTGATGGAGCAGGGTGGTaGTGGCAGGAACTCCATTCC +
Preference number: 2 (lower is better)
Translates to: GDGSRNSQGRWEEIPLIADGAGW*WQELHS
Trigger: GGAATGGAGTTCCTGCCAGCACCACCCTGCTCCATC...AGCAATAAGAGGGATCTCTTCCCACCTCCCCTGACTATTCCTACTCCCATCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp TTCTCCCTGCAGGGGGAGTTGAGAACGGTTGAGGGTGTGGAGACCGGCAGCCGGGAGACAGGCAGGAAATaGGGTGAATGCATGAATATA +
Preference number: 2 (lower is better)
Translates to: FSLQGELRTVEGVETGSRETGRK*GECMNI
Trigger: TATATTCATGCATTCACCCCATTTCCTGCCTGTCTC...CCGGCTGCCGGTCTCCACACCCTCAACCGTTCTCAACTCCCCCTGCAGGGAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CAA 90 bp AGCATTCTCCTACTTAGACTCTCCAACACCCACCATTCTTATCCCTaGCTGGCCCTAGGTGCCCAATCCCATGTCACCATACAGGGCAGC +
Preference number: 2 (lower is better)
Translates to: SILLLRLSNTHHSYP*LALGAQSHVTIQGS
Trigger: GCTGCCCTGTATGGTGACATGGGATTGGGCACCTAGGGCCAGCAAGGGATAAGAATGGTGGGTGTTGGAGAGTCTAAGTAGGAGAATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGGAAGGTGCTGGGAACTaGACCTGGGTCCTCTGCAAG +
Preference number: 2 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKEGAGN*TWVLCK
Trigger: CTTGCAGAGGACCCAGGTTCAGTTCCCAGCACCTTC...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp GGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATACCAGAAAGCAGTGGTTTaGAGCGGTGATGATCCGCTG +
Preference number: 2 (lower is better)
Translates to: GEGEEKSGRGSNQPAWKYQKAVV*SGDDPL
Trigger: CAGCGGATCATCACCGCTGCAAACCACTGCTTTCTG...GTATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGAAAGGGGCGTGGCCCTaGAGCAATAACAGCTGGGAG +
Preference number: 2 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKKGAWP*SNNSWE
Trigger: CTCCCAGCTGTTATTGCTGCAGGGCCACGCCCCTTT...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp TGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATAAGAGCTGAGAGGAGGTaGTGGCTGGAGGTGGTATCT +
Preference number: 2 (lower is better)
Translates to: WGGRREIRTRKQPTSLEIRAERR*WLEVVS
Trigger: AGATACCACCTCCAGCCACCACCTCCTCTCAGCTCT...TATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp GACGAGGAAGCAACCAACCAGCCTGGAAATACAGGGAAGGCGGGCACAGAAAGCAAAATACCTCACCCCTaGGTACACGCATACATACAC +
Preference number: 2 (lower is better)
Translates to: DEEATNQPGNTGKAGTESKIPHP*VHAYIH
Trigger: GTGTATGTATGCGTGTACTCAGGGGTGAGGTATTTT...GCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCTTCCTCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp CTAGTCATCTTCTCTATAACTGAATTCTCTTGCAATCTCGGCATGCCCTGCCCCGAAGGTGCTGGGAACTaGACCTGGGTCCTCTGCAAG +
Preference number: 2 (lower is better)
Translates to: LVIFSITEFSCNLGMPCPEGAGN*TWVLCK
Trigger: CTTGCAGAGGACCCAGGTTCAGTTCCCAGCACCTTC...GGGGCAGGGCATGCCGAGATTGCAAGAGAATTCAGTTATAGAGAAGATGACTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp GACGAGGAAGCAACCAACCAGCCTGGAAATACAGGGAAGGCGGGCACAGAAAGCTGCCTGTGGCTCACCTaGTCCCAGCATTATAAATTA +
Preference number: 2 (lower is better)
Translates to: DEEATNQPGNTGKAGTESCLWLT*SQHYKL
Trigger: TAATTTATAATGCTGGGAGCAGGTGAGCCACAGGCA...GCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCTTCCTCGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp CTGAGTACACGCATACATACACACACATGCATACACACACACAGGCACTCTCCAGCTGAGAGGAGGTGGTaGCTGGAGGTGGTATCTAGG +
Preference number: 2 (lower is better)
Translates to: LSTRIHTHTCIHTHRHSPAERRW*LEVVSR
Trigger: CCTAGATACCACCTCCAGCCACCACCTCCTCTCAGC...TGGAGAGTGCCTGTGTGTGTGTATGCATGTGTGTGTATGTATGCGTGTACTCAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp CAGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTGCTGAGAGGAGGTGGTaGCTGGAGGTGGTATCTAGG +
Preference number: 2 (lower is better)
Translates to: QAIPKSEQISVVSCRNWLAERRW*LEVVSR
Trigger: CCTAGATACCACCTCCAGCCACCACCTCCTCTCAGC...AAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp TGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCAGCTTTCTTCTCTAGAGCTGAGAGGAGGTaGTGGCTGGAGGTGGTATCT +
Preference number: 2 (lower is better)
Translates to: WSSIFRHQFCRSPSAFFSRAERR*WLEVVS
Trigger: AGATACCACCTCCAGCCACCACCTCCTCTCAGCTCT...AGAGAAGAAAGCTGAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp TGCCCAATAGATGTGCTTCTTGAACAGAACACCCAGAGCAGCCCAAGCTACCAAAGCAACCAACCAGCCTaGAAATACAGGGAAGGCGGG +
Preference number: 2 (lower is better)
Translates to: CPIDVLLEQNTQSSPSYQSNQPA*KYREGG
Trigger: CCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCT...TTGGTAGCTTGGGCTGCTCTGGGTGTTCTGTTCAAGAAGCACATCTATTGGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp AAGAGGGTGTCAGGTCCTCTGGAACTGGAGTCACAGATAACTGTAAGCTACCAACTTCCCCAGACCTCTTaGGTGAGGCGCACAGCTTTT +
Preference number: 2 (lower is better)
Translates to: KRVSGPLELESQITVSYQLPQTS*VRRTAF
Trigger: AAAAGCTGTGCGCCTCACTCAAGAGGTCTGGGGAAG...TTGGTAGCTTACAGTTATCTGTGACTCCAGTTCCAGAGGACCTGACACCCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp CCCCAGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGGAAGTAAGAAAGAGTTaGCTGTGGCTCACCTGCTCC +
Preference number: 2 (lower is better)
Translates to: PQAIPKSEQISVVSCRNWEVRKS*LWLTCS
Trigger: GGAGCAGGTGAGCCACAGGCAACTCTTTCTTACTTC...CCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GCTTTCTTCTCTGCTCCCCACGAATCTTCTGTTTCCCCAAGAAGTCCTAGCCTTGGTGGTGGCTGGAGGTaGTATCTAGGATGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: AFFSAPHESSVSPRSPSLGGGWR*YLGCVC
Trigger: ACACACACATCCTAGATACCACCTCCAGCCACCACC...AAGGCTAGGACTTCTTGGGGAAACAGAAGATTCGTGGGGAGCAGAGAAGAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GGACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGAAAAAGGAGACAGAATaGAGAGTCATGGAGAAAGCA +
Preference number: 2 (lower is better)
Translates to: GRWGGRREIRTRKQPTSLKKETE*RVMEKA
Trigger: TGCTTTCTCCATGACTCTCCATTCTGTCTCCTTTTT...CAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp GGGGATGGGAGTAGGAATAGTCAGGGGAGGTGGGAAGAGATCCCTCTTATTGCTAATAGATGTGCTTCTTaGACAGAACACCCAGAGCAG +
Preference number: 2 (lower is better)
Translates to: GDGSRNSQGRWEEIPLIANRCAS*TEHPEQ
Trigger: CTGCTCTGGGTGTTCTGTTCAAGAAGCACATCTATT...AGCAATAAGAGGGATCTCTTCCCACCTCCCCTGACTATTCCTACTCCCATCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp TGGCTGAGGGAGGGTTCTAGAAAGACACAGTGTATGGGGCAGTGGCAGCCGTTCAGAACAGAGAAAGAGTaGGTTGGGTTTGTAAGAAAC +
Preference number: 2 (lower is better)
Translates to: WLREGSRKTQCMGQWQPFRTEKE*VGFVRN
Trigger: GTTTCTTACAAACCCAACTCACTCTTTCTCTGTTCT...GAACGGCTGCCACTGCCCCATACACTGTGTCTTTCTAGAACCCTCCCTCAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGTTCAGACACCAATTCTaGAGGAGCCCCTCAGCTTTC +
Preference number: 2 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKFRHQF*RSPSAF
Trigger: GAAAGCTGAGGGGCTCCTGCAGAATTGGTGTCTGAA...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp CTAGTCATCTTCTCTATAACTGAATTCTCTTGCAATCTCGGCATGCCCTGCCCCCAGAAAGCAGTGGTTTaGAGCGGTGATGATCCGCTG +
Preference number: 2 (lower is better)
Translates to: LVIFSITEFSCNLGMPCPQKAVV*SGDDPL
Trigger: CAGCGGATCATCACCGCTGCAAACCACTGCTTTCTG...GGGGCAGGGCATGCCGAGATTGCAAGAGAATTCAGTTATAGAGAAGATGACTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp CTGAGTACACGCATACATACACACACATGCATACACACACACAGGCACTCTCCAGGTGGTGGCTGGAGGTaGTATCTAGGATGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: LSTRIHTHTCIHTHRHSPGGGWR*YLGCVC
Trigger: ACACACACATCCTAGATACCACCTCCAGCCACCACC...TGGAGAGTGCCTGTGTGTGTGTATGCATGTGTGTGTATGTATGCGTGTACTCAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp AGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTTAATACCAGACAGGCCTaGGGGACAGAGCTGAGAGGA +
Preference number: 2 (lower is better)
Translates to: RLFPSQSKFQWSAAETGFNTRQA*GTELRG
Trigger: TCCTCTCAGCTCTGTCCCCCAGGCCTGTCTGGTATT...AAAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GACGAGGAAGCAACCAACCAGCCTGGAAATACAGGGAAGGCGGGCACAGAAAGCAAAAAGGAGACAGAATaGAGAGTCATGGAGAAAGCA +
Preference number: 2 (lower is better)
Translates to: DEEATNQPGNTGKAGTESKKETE*RVMEKA
Trigger: TGCTTTCTCCATGACTCTCCATTCTGTCTCCTTTTT...GCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCTTCCTCGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp CTAGTCATCTTCTCTATAACTGAATTCTCTTGCAATCTCGGCATGCCCTGCCCCCTACCAAGAAGGTGCTaGGAACTGAACCTGGGTCCT +
Preference number: 2 (lower is better)
Translates to: LVIFSITEFSCNLGMPCPLPRRC*ELNLGP
Trigger: AGGACCCAGGTTCAGTTCCCAGCACCTTCTTGGTAG...GGGGCAGGGCATGCCGAGATTGCAAGAGAATTCAGTTATAGAGAAGATGACTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GATGGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTATTTCCTATGGCTAAATaGCTTTCCTTAAAGCAGCCT +
Preference number: 2 (lower is better)
Translates to: DGAGWCWQELHSIGRRGVFPMAK*LSLKQP
Trigger: AGGCTGCTTTAAGGAAAGCCATTTAGCCATAGGAAA...TACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp AGAAGGCTAAATGTATGGCTGTGGGTATTCCTGGGAACATCTACAGGATTGGATCTTCCCCAGACCTCTTaGGTGAGGCGCACAGCTTTT +
Preference number: 2 (lower is better)
Translates to: RRLNVWLWVFLGTSTGLDLPQTS*VRRTAF
Trigger: AAAAGCTGTGCGCCTCACTCAAGAGGTCTGGGGAAG...ATCCAATCCTGTAGATGTTCCCAGGAATACCCACAGCCATACATTTAGCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp GTAAACAGGTTGTCTACACACATACTCACTGGGCCAGCCACCAGTGGTGATTTTTTCAGACACCAATTCTaGAGGAGCCCCTCAGCTTTC +
Preference number: 2 (lower is better)
Translates to: VNRLSTHILTGPATSGDFFRHQF*RSPSAF
Trigger: GAAAGCTGAGGGGCTCCTGCAGAATTGGTGTCTGAA...AAAATCACCACTGGTGGCTGGCCCAGTGAGTATGTGTGTAGACAACCTGTTTAC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp CATGAAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTGGTGGTGGCTGGAGGTaGTATCTAGGATGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: HEEYLQPQFVGGSEVRKSGGGWR*YLGCVC
Trigger: ACACACACATCCTAGATACCACCTCCAGCCACCACC...ACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGTGCCTGTGGCTCACCTaGTCCCAGCATTATAAATTA +
Preference number: 2 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKCLWLT*SQHYKL
Trigger: TAATTTATAATGCTGGGAGCAGGTGAGCCACAGGCA...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp CAACATCTACATGACCAGTCTGAGTGTCTGTTTGGCTTGTTTTCAATTGGGAAATCGCTGGTATGCGCTTaGAAGGGCAGGAGCAGCTTC +
Preference number: 2 (lower is better)
Translates to: QHLHDQSECLFGLFSIGKSLVCA*KGRSSF
Trigger: GAAGCTGCTCCTGCCCTTGCAAGCGCATACCAGCGA...TTTCCCAATTGAAAACAAGCCAAACAGACACTCAGACTGGTCATGTAGATGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GTTAAGGTAGCCAAGAAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCAGAGGAGGTGGTGGCTaGAGGTGGTATCTAGGATGT +
Preference number: 2 (lower is better)
Translates to: VKVAKKVLMQNEWLESNARGGGG*RWYLGC
Trigger: ACATCCTAGATACCACCTCCAGCCACCACCTCCTCT...GGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTTCTTGGCTACCTTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTGATGGGGGCTTTGCCCTCCCTAAACAGAATTTTGTaGTATCTTCCCTTTCCTATG +
Preference number: 2 (lower is better)
Translates to: VAAVRSQTFMHLMGALPSLNRIL*YLPFPM
Trigger: CATAGGAAAGGGAAGATACCACAAAATTCTGTTTAG...GGAGGGCAAAGCCCCCATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp CATGAAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTTCCAAAGAGGGCAATaGAAATACCTCACCCCTGAG +
Preference number: 2 (lower is better)
Translates to: HEEYLQPQFVGGSEVRKSFQRGQ*KYLTPE
Trigger: CTCAGGGGTGAGGTATTTTCATTGCCCTCTTTGGAA...ACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp TTTCCTCCACCTAAAGTTTGCCTCATTTGCCCAATAGATGTGCTTCTTGAACAGCCCAGACCTCTTGAGTaGGGCGCACAGCTTTTTGTT +
Preference number: 2 (lower is better)
Translates to: FPPPKVCLICPIDVLLEQPRPLE*GAQLFV
Trigger: AACAAAAAGCTGTGCGCCTCACTCAAGAGGTCTGGG...CTGTTCAAGAAGCACATCTATTGGGCAAATGAGGCAAACTTTAGGTGGAGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAAGGAGGCAAAGAGGAGGTGGTGGCTaGAGGTGGTATCTAGGATGT +
Preference number: 2 (lower is better)
Translates to: ETGRKWGECMNIYEERRQRGGGG*RWYLGC
Trigger: ACATCCTAGATACCACCTCCAGCCACCACCTCCTCT...TTGCCTCCTTTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGGAGACAGGCAGGAAATaGGGTGAATGCATGAATATA +
Preference number: 2 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKETGRK*GECMNI
Trigger: TATATTCATGCATTCACCCCATTTCCTGCCTGTCTC...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGCTAAATGTATGGCTGTaGGTATTCCTGGGAACATCT +
Preference number: 2 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKLNVWL*VFLGTS
Trigger: AGATGTTCCCAGGAATACCCACAGCCATACATTTAG...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp AAAAGGTCAGAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAAGCAACCAACCAGCCTaGAAATACAGGGAAGGCGGG +
Preference number: 2 (lower is better)
Translates to: KRSETGRKWGECMNIYEESNQPA*KYREGG
Trigger: CCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCT...TTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTCTGACCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp TTTCCTCCACCTAAAGTTTGCCTCATTTGCCCAATAGATGTGCTTCTTGAACAGTTCCAAAGAGGGCAATaGAAATACCTCACCCCTGAG +
Preference number: 2 (lower is better)
Translates to: FPPPKVCLICPIDVLLEQFQRGQ*KYLTPE
Trigger: CTCAGGGGTGAGGTATTTTCATTGCCCTCTTTGGAA...CTGTTCAAGAAGCACATCTATTGGGCAAATGAGGCAAACTTTAGGTGGAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp CTAAACAGAATTTTGTGGTATCTTCCCTTTCCTATGGCTAAATGGCTTTCCTTACTTCCCCAGACCTCTTaGGTGAGGCGCACAGCTTTT +
Preference number: 2 (lower is better)
Translates to: LNRILWYLPFPMAKWLSLLPQTS*VRRTAF
Trigger: AAAAGCTGTGCGCCTCACTCAAGAGGTCTGGGGAAG...TAAGGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAAAATTCTGTTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCCATCTTCTCTATAACTaGATTCTCTTGCAATCTCGG +
Preference number: 2 (lower is better)
Translates to: QKAARKRETVLVCLTSPAHLLYN*ILLQSR
Trigger: CCGAGATTGCAAGAGAATTCAGTTATAGAGAAGATG...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp CAACATCTACATGACCAGTCTGAGTGTCTGTTTGGCTTGTTTTCAATTGGGAAAGGGAGAAGCAGCACTTaGAATGGCCTTCATTCAGCA +
Preference number: 2 (lower is better)
Translates to: QHLHDQSECLFGLFSIGKGRSST*NGLHSA
Trigger: TGCTGAATGAAGGCCATTTCAAGTGCTGCTTCTCCC...TTTCCCAATTGAAAACAAGCCAAACAGACACTCAGACTGGTCATGTAGATGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGAAAGTTTGCCTCATTTaGCCAATAGATGTGCTTCTT +
Preference number: 2 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKKVCLI*PIDVLL
Trigger: AAGAAGCACATCTATTGGGCAAATGAGGCAAACTTT...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp AAAAGGTCAGAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAAGAAAGAGTTGCCTGTaGCTCACCTGCTCCCAGCAT +
Preference number: 2 (lower is better)
Translates to: KRSETGRKWGECMNIYEERKSCL*LTCSQH
Trigger: ATGCTGGGAGCAGGTGAGCCACAGGCAACTCTTTCT...TTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTCTGACCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp ACAGTGTATGGGGCAGTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTGATGCTAAACAGAATTTTGTaGTATCTTCCCTTTCCTATG +
Preference number: 2 (lower is better)
Translates to: TVYGAVAAVRSQTFMHLMLNRIL*YLPFPM
Trigger: CATAGGAAAGGGAAGATACCACAAAATTCTGTTTAG...CATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCACTGCCCCATACACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CAA 90 bp GGACCGGGAGGTGGCATAGTGGATAGATCAGTTCTAAACAGAATTTaGTGGTATCTTCCCTTTCCTATGGCTAAATGGCTTTCCTTAAAG +
Preference number: 2 (lower is better)
Translates to: GPGGGIVDRSVLNRI*WYLPFPMAKWLSLK
Trigger: CTTTAAGGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAAAATTCTGTTTAGAACTGATCTATCCACTATGCCACCTCCCGGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp CAACATCTACATGACCAGTCTGAGTGTCTGTTTGGCTTGTTTTCAATTGGGAAATTCCAAAGAGGGCAATaGAAATACCTCACCCCTGAG +
Preference number: 2 (lower is better)
Translates to: QHLHDQSECLFGLFSIGKFQRGQ*KYLTPE
Trigger: CTCAGGGGTGAGGTATTTTCATTGCCCTCTTTGGAA...TTTCCCAATTGAAAACAAGCCAAACAGACACTCAGACTGGTCATGTAGATGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp CTAGTCATCTTCTCTATAACTGAATTCTCTTGCAATCTCGGCATGCCCTGCCCCATGCATGAATATATATaGAGAAAGGAGGCAAAGGAC +
Preference number: 2 (lower is better)
Translates to: LVIFSITEFSCNLGMPCPMHEYI*RKEAKD
Trigger: GTCCTTTGCCTCCTTTCTTCATATATATTCATGCAT...GGGGCAGGGCATGCCGAGATTGCAAGAGAATTCAGTTATAGAGAAGATGACTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp CAACATCTACATGACCAGTCTGAGTGTCTGTTTGGCTTGTTTTCAATTGGGAAATCCATGAAGAATACTTaGAGCCCCAGTTTGTGGGTG +
Preference number: 2 (lower is better)
Translates to: QHLHDQSECLFGLFSIGKSMKNT*SPSLWV
Trigger: CACCCACAAACTGGGGCTGCAAGTATTCTTCATGGA...TTTCCCAATTGAAAACAAGCCAAACAGACACTCAGACTGGTCATGTAGATGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR TCA 90 bp GTTAAGGTAGCCAAGAAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCAGAACAGAGAAAGAGTaGGTTGGGTTTGTAAGAAAC +
Preference number: 2 (lower is better)
Translates to: VKVAKKVLMQNEWLESNARTEKE*VGFVRN
Trigger: GTTTCTTACAAACCCAACTCACTCTTTCTCTGTTCT...GGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTTCTTGGCTACCTTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp GTAAACAGGTTGTCTACACACATACTCACTGGGCCAGCCACCAGTGGTGATTTTTCTTATGCGTATGAGTaGTTGTCTATGTGTATGTAT +
Preference number: 2 (lower is better)
Translates to: VNRLSTHILTGPATSGDFSYAYE*LSMCMY
Trigger: ATACATACACATAGACAAGCACTCATACGCATAAGA...AAAATCACCACTGGTGGCTGGCCCAGTGAGTATGTGTGTAGACAACCTGTTTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR GCA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCTCTTATGCGTATGAGTaGTTGTCTATGTGTATGTAT +
Preference number: 2 (lower is better)
Translates to: QKAARKRETVLVCLTSPASYAYE*LSMCMY
Trigger: ATACATACACATAGACAAGCACTCATACGCATAAGA...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CCA 90 bp AAAAGGTCAGAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAACAGAATGGAGAGTCATaGAGAAAGCAGACTTACAAA +
Preference number: 2 (lower is better)
Translates to: KRSETGRKWGECMNIYEEQNGES*RKQTYK
Trigger: TTTGTAAGTCTGCTTTCTCCATGACTCTCCATTCTG...TTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTCTGACCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR TCA 72 bp CACAGCCCACCACAGGCTAGCTCAGCCACCAGTCCATaGAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTC +
Preference number: 3 (lower is better)
Translates to: HSPPQASSATSP*RILAAPVCGWV
Trigger: GACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATGGACTGGTGGCTGAGCTAGCCTGTGGTGGGCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR GCA 72 bp GAAATACAGGGAAGGCGGGCACAGAAAGCAGTGGTTTaGAGCGGTGATGATCCGCTGTTTGACAGTGACCCC +
Preference number: 3 (lower is better)
Translates to: EIQGRRAQKAVV*SGDDPLFDSDP
Trigger: GGGGTCACTGTCAAACAGCGGATCATCACCGCTGCAAACCACTGCTTTCTGTGCCCGCCTTCCCTGTATTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR GCA 72 bp CAACACCCACCATTCTTATCCCTTGCTGGCCCTAGGTaGCCAATCCCATGTCACCATACAGGGCAGCTCACT +
Preference number: 3 (lower is better)
Translates to: QHPPFLSLAGPR*PIPCHHTGQLT
Trigger: AGTGAGCTGCCCTGTATGGTGACATGGGATTGGGCACCTAGGGCCAGCAAGGGATAAGAATGGTGGGTGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CAA 90 bp GCATCCCCGAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATGAATGGCCCAGAAGTAAGAAAGAGTaGCCTGTGGCTCACCTGCTC +
Preference number: 3 (lower is better)
Translates to: ASPRLGPLVPSGLVDEWPRSKKE*PVAHLL
Trigger: GAGCAGGTGAGCCACAGGCAACTCTTTCTTACTTCT...GGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTCGGGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CAA 90 bp TGGCTGAGGGAGGGTTCTAGAAAGACACAGTGTATGGGGCAGTGGCAGCCGTTCAGAAGTAAGAAAGAGTaGCCTGTGGCTCACCTGCTC +
Preference number: 3 (lower is better)
Translates to: WLREGSRKTQCMGQWQPFRSKKE*PVAHLL
Trigger: GAGCAGGTGAGCCACAGGCAACTCTTTCTTACTTCT...GAACGGCTGCCACTGCCCCATACACTGTGTCTTTCTAGAACCCTCCCTCAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CAA 90 bp GACGAGGAAGCAACCAACCAGCCTGGAAATACAGGGAAGGCGGGCACAGAAAGCGTCCATGAAGAATACTaGCAGCCCCAGTTTGTGGGT +
Preference number: 3 (lower is better)
Translates to: DEEATNQPGNTGKAGTESVHEEY*QPQFVG
Trigger: ACCCACAAACTGGGGCTGCAAGTATTCTTCATGGAC...GCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCTTCCTCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 72 bp GAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTaGAAATACAGGGAAGGCGGGCACAGAAAGCAGTGG +
Preference number: 3 (lower is better)
Translates to: EEKSGRGSNQPA*KYREGGHRKQW
Trigger: CCACTGCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 72 bp TGTGGTCAGGCTAATGCATTGCTCACATTAACAGGGTaGGGGATGGGAGTAGGAATAGTCAGGGGAGGTGGG +
Preference number: 3 (lower is better)
Translates to: CGQANALLTLTG*GMGVGIVRGGG
Trigger: CCCACCTCCCCTGACTATTCCTACTCCCATCCCCCACCCTGTTAATGTGAGCAATGCATTAGCCTGACCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR TCA 72 bp GGCAGCAGACACATAAAACAGCTTCTCCAGGGAGAGTaGGACCACAGCTTAGTGGAGACAGGCAGCATTCTC +
Preference number: 3 (lower is better)
Translates to: GSRHIKQLLQGE*DHSLVETGSIL
Trigger: GAGAATGCTGCCTGTCTCCACTAAGCTGTGGTCTCACTCTCCCTGGAGAAGCTGTTTTATGTGTCTGCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CAA 90 bp GCGACCACCTGTGGTCAGGCTAATGCATTGCTCACATTAACAGGGTGGGGGATGGAGGAGAGGAGTAGTTaGGCTAAACAGAGGAAGCAA +
Preference number: 3 (lower is better)
Translates to: ATTCGQANALLTLTGWGMEERSS*AKQRKQ
Trigger: TTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTC...CATCCCCCACCCTGTTAATGTGAGCAATGCATTAGCCTGACCACAGGTGGTCGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR-3UTR CAA 90 bp GGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATACGAGGCGCACAGCTTTTaGTTCTGGAGCACAAGAAAA +
Preference number: 3 (lower is better)
Translates to: GEGEEKSGRGSNQPAWKYEAHSF*FWSTRK
Trigger: TTTTCTTGTGCTCCAGAACAAAAAGCTGTGCGCCTC...GTATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR TCA 72 bp CAGTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTaGTGGGGGCTTTGCCCTCCATTTGGGTATTTTCCA +
Preference number: 3 (lower is better)
Translates to: QWQPFVRKHSCI*WGLCPPFGYFP
Trigger: TGGAAAATACCCAAATGGAGGGCAAAGCCCCCATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCACTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR TCA 72 bp GAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATaGATGGCCCACAAGTCACCAGCCTTTGAGCAAGTT +
Preference number: 3 (lower is better)
Translates to: EAWASCSFRTCR*MAHKSPAFEQV
Trigger: AACTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR TCA 72 bp AGTCCTAGCCTTCCTCCAGATTACCTCAACTTACAGTaGAAAGTTGTTCTGAGCTCCCACAGCCCACCACAG +
Preference number: 3 (lower is better)
Translates to: SPSLPPDYLNLQ*KVVLSSHSPPQ
Trigger: CTGTGGTGGGCTGTGGGAGCTCAGAACAACTTTTCACTGTAAGTTGAGGTAATCTGGAGGAAGGCTAGGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 72 bp GGAGTCACAGATAACTGTAAGCTACCAAGAAGGTGCTaGGAACTGAACCTGGGTCCTCTGCAAGAGCAAAAG +
Preference number: 3 (lower is better)
Translates to: GVTDNCKLPRRC*ELNLGPLQEQK
Trigger: CTTTTGCTCTTGCAGAGGACCCAGGTTCAGTTCCCAGCACCTTCTTGGTAGCTTACAGTTATCTGTGACTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 72 bp CAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTaGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCA +
Preference number: 3 (lower is better)
Translates to: QELHSIGRRGVV*LNRGSNCPKAA
Trigger: TGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR GCA 72 bp GGGTCAGAAGTAAGAAAGAGTTGCCTGTGGCTCACCTaGTCCCAGCATTATAAATTAAAACCTTCCCCAGAC +
Preference number: 3 (lower is better)
Translates to: GSEVRKSCLWLT*SQHYKLKPSPD
Trigger: GTCTGGGGAAGGTTTTAATTTATAATGCTGGGAGCAGGTGAGCCACAGGCAACTCTTTCTTACTTCTGACCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR CCA 72 bp TTCCCCAGGCTATTCCCAAGTCAGAGCAAATTTCAGTaGTCAGCTGCAGAAACTGGCTTTCCTAGTCATCTT +
Preference number: 3 (lower is better)
Translates to: FPRLFPSQSKFQ*SAAETGFPSHL
Trigger: AAGATGACTAGGAAAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTGGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR GCA 72 bp GCTTTCCTAGTCATCTTCTCTATAACTGAATTCTCTTaGAATCTCGGCATGCCCTGCCCCATGCTTTTACTT +
Preference number: 3 (lower is better)
Translates to: AFLVIFSITEFS*NLGMPCPMLLL
Trigger: AAGTAAAAGCATGGGGCAGGGCATGCCGAGATTGCAAGAGAATTCAGTTATAGAGAAGATGACTAGGAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 72 bp TTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTGCCTGTaGCTCACCTGCTCCCAGCATTATAAATTAAAACCT +
Preference number: 3 (lower is better)
Translates to: FVGGSEVRKSCL*LTCSQHYKLKP
Trigger: AGGTTTTAATTTATAATGCTGGGAGCAGGTGAGCCACAGGCAACTCTTTCTTACTTCTGACCCACCCACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CAA 90 bp AAAAGGTCAGAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAGAGGCGCACAGCTTTTaGTTCTGGAGCACAAGAAAA +
Preference number: 3 (lower is better)
Translates to: KRSETGRKWGECMNIYEEEAHSF*FWSTRK
Trigger: TTTTCTTGTGCTCCAGAACAAAAAGCTGTGCGCCTC...TTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTCTGACCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
3UTR-3UTR CAA 90 bp AGAAGGCTAAATGTATGGCTGTGGGTATTCCTGGGAACATCTACAGGATTGGATTATGCGTATGAGTGCTaGTCTATGTGTATGTATGTA +
Preference number: 3 (lower is better)
Translates to: RRLNVWLWVFLGTSTGLDYAYEC*SMCMYV
Trigger: TACATACATACACATAGACAAGCACTCATACGCATA...ATCCAATCCTGTAGATGTTCCCAGGAATACCCACAGCCATACATTTAGCCTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CCA 72 bp GGCATAGTGGATAGATCAGTTCTAAACAGAATTTTGTaGTATCTTCCCTTTCCTATGGCTAAATGGCTTTCC +
Preference number: 3 (lower is better)
Translates to: GIVDRSVLNRIL*YLPFPMAKWLS
Trigger: GGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAAAATTCTGTTTAGAACTGATCTATCCACTATGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAGGGACTTGTCCCATaGGACCTGGCCCCGGGAGGC +
Preference number: 4 (lower is better)
Translates to: DAGEGEEKSGRGSNQPAWKGLVP*DLAPGG
Trigger: GCCTCCCGGGGCCAGGTCCCATGGGACAAGTCCCTT...CCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGCTGAGCCTCCCGGTTCCAGCTaGAGGCCTTTCGGCTCACTT +
Preference number: 4 (lower is better)
Translates to: GSNCPKAAASPSHLLRAEPPGSS*RPFGSL
Trigger: AAGTGAGCCGAAAGGCCTCCAGCTGGAACCGGGAGG...CTCAGCCCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp TTCTCCCTGCAGGGGGAGTTGAGAACGGTTGAGGGTGTGGAGACCGGCAGCCGGAGTTCTGGGTTCCCATaGCCTTCAGAGGAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: FSLQGELRTVEGVETGSRSSGFP*PSEEVL
Trigger: CAGGACCTCCTCTGAAGGCCATGGGAACCCAGAACT...CCGGCTGCCGGTCTCCACACCCTCAACCGTTCTCAACTCCCCCTGCAGGGAGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TTCTCCCTGCAGGGGGAGTTGAGAACGGTTGAGGGTGTGGAGACCGGCAGCCGGCCCAGACCTCTTGAGTaGGGCGCACAGCTTTTTGTT +
Preference number: 4 (lower is better)
Translates to: FSLQGELRTVEGVETGSRPRPLE*GAQLFV
Trigger: AACAAAAAGCTGTGCGCCTCACTCAAGAGGTCTGGG...CCGGCTGCCGGTCTCCACACCCTCAACCGTTCTCAACTCCCCCTGCAGGGAGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000238416.3
CDS-3UTR TCA 90 bp AGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGCTGAGAGGGGTGTTGACCAGTGTTaGCTTGCCCAGTCCACTCTG +
Preference number: 4 (lower is better)
Translates to: SNCPKAAASPSHLLRAERGVDQC*LAQSTL
Trigger: CAGAGTGGACTGGGCAAGTCAACACTGGTCAACACC...CCTCTCAGCCCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGCTGAGAGGCTTCCCCAGACCTCTTaGGTGAGGCGCACAGCTTTT +
Preference number: 4 (lower is better)
Translates to: SNCPKAAASPSHLLRAERLPQTS*VRRTAF
Trigger: AAAAGCTGTGCGCCTCACTCAAGAGGTCTGGGGAAG...CCTCTCAGCCCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000230365.2
ENSMUST00000238416.3
CDS-3UTR CCA 90 bp GACGAGGAAGCAACCAACCAGCCTGGAAATACAGGGAAGGCGGGCACAGAAAGCCCTCCCGGTTCCAGCTaGAGGCCTTTCGGCTCACTT +
Preference number: 4 (lower is better)
Translates to: DEEATNQPGNTGKAGTESPPGSS*RPFGSL
Trigger: AAGTGAGCCGAAAGGCCTCCAGCTGGAACCGGGAGG...GCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCTTCCTCGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGGTGGCTGGTACAGGTaGAAGGACAGTGCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: NRGSNCPKAAASPSHLLRGGWYR*KDSAQE
Trigger: CTCCTGGGCACTGTCCTTCCACCTGTACCAGCCACC...CCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230507.2
CDS-3UTR CCA 90 bp GGACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGTCTGCAGTGAGCTTTTaGTGGGTGTGGTGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: GRWGGRREIRTRKQPTSLSAVSF*WVWCPS
Trigger: GCTGGGGCACCACACCCACCAAAAGCTCACTGCAGA...CAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GATGGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTACCTGGGCTGGGTCTGTaGTTCTGCTCGGCTTTTGAG +
Preference number: 4 (lower is better)
Translates to: DGAGWCWQELHSIGRRGVPGLGL*FCSAFE
Trigger: CTCAAAAGCCGAGCAGAAGCACAGACCCAGCCCAGG...TACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGCATGCCCAATCGCTTTaGTCTCCACTGTCTTGGGGA +
Preference number: 4 (lower is better)
Translates to: GRWGGRREIRTRKQPTSLHAQSL*SPLSWG
Trigger: TCCCCAAGACAGTGGAGATCAAAGCGATTGGGCATG...CAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGTGCGAACCCTCTGCTTaGATTCCGACTTCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: GRWGGRREIRTRKQPTSLCEPSA*IPTSPP
Trigger: TGGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCA...CAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TCCCTACACAAGGACTGGGGTGCTGCTGACACAGATGATGGAGCAGGGTGGTGCTGCGAACCCTCTGCTTaGATTCCGACTTCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: SLHKDWGAADTDDGAGWCCEPSA*IPTSPP
Trigger: TGGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCA...GCACCACCCTGCTCCATCATCTGTGTCAGCAGCACCCCAGTCCTTGTGTAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTGGCCTCCATTGTCATTaGGCCTCTTGGCCCTGTAAG +
Preference number: 4 (lower is better)
Translates to: GAGWCWQELHSIGRRGVVGLHCH*ASWPCK
Trigger: CTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCC...AACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGCACGGGTGTCAGGGATaGGTTTCTTCCTGGCAATGT +
Preference number: 4 (lower is better)
Translates to: DAGEGEEKSGRGSNQPAWHGCQG*VSSWQC
Trigger: ACATTGCCAGGAAGAAACGCATCCCTGACACCCGTG...CCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp AGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGAATACCCCTGGGCCTaGACTTGCCTCTTCCTGGAG +
Preference number: 4 (lower is better)
Translates to: SRVVLAGTPFHWEERSSLEYPWA*TCLFLE
Trigger: CTCCAGGAAGAGGCAAGTGCAGGCCCAGGGGTATTC...CAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp TCCCTACACAAGGACTGGGGTGCTGCTGACACAGATGATGGAGCAGGGTGGTGCCAGAACAGGAAGCTCTaGGCTTCTGACCAGTCTGGA +
Preference number: 4 (lower is better)
Translates to: SLHKDWGAADTDDGAGWCQNRKL*ASDQSG
Trigger: TCCAGACTGGTCAGAAGCGCAGAGCTTCCTGTTCTG...GCACCACCCTGCTCCATCATCTGTGTCAGCAGCACCCCAGTCCTTGTGTAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GATGGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTACTGGGTCTGTGCTTCTaGTCGGCTTTTGAGGAGAGG +
Preference number: 4 (lower is better)
Translates to: DGAGWCWQELHSIGRRGVLGLCF*SAFEER
Trigger: CCTCTCCTCAAAAGCCGAGCAGAAGCACAGACCCAG...TACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp ACAGATAACTGTAAGCTACCAAGAAGGTGCTGGGAACTGAACCTGGGTCCTCTGAAGGGACTTGTCCCATaGGACCTGGCCCCGGGAGGC +
Preference number: 4 (lower is better)
Translates to: TDNCKLPRRCWELNLGPLKGLVP*DLAPGG
Trigger: GCCTCCCGGGGCCAGGTCCCATGGGACAAGTCCCTT...CAGAGGACCCAGGTTCAGTTCCCAGCACCTTCTTGGTAGCTTACAGTTATCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GCATCCCCGAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATGAATGGCCCCATGCCCAATCGCTTTaGTCTCCACTGTCTTGGGGA +
Preference number: 4 (lower is better)
Translates to: ASPRLGPLVPSGLVDEWPHAQSL*SPLSWG
Trigger: TCCCCAAGACAGTGGAGATCAAAGCGATTGGGCATG...GGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTCGGGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGCTGACCTGTGGCACATaGGCCATGAGTGGCAAACTT +
Preference number: 4 (lower is better)
Translates to: NRGSNCPKAAASPSHLLRLTCGT*AMSGKL
Trigger: AAGTTTGCCACTCATGGCTCATGTGCCACAGGTCAG...CCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGCTCTGGCCAAAGCTTTaGCTGTGTCCAACCTGGTTA +
Preference number: 4 (lower is better)
Translates to: DAGEGEEKSGRGSNQPAWLWPKL*LCPTWL
Trigger: TAACCAGGTTGGACACAGTCAAAGCTTTGGCCAGAG...CCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GATGGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTACACGGGTGTCAGGGATaGGTTTCTTCCTGGCAATGT +
Preference number: 4 (lower is better)
Translates to: DGAGWCWQELHSIGRRGVHGCQG*VSSWQC
Trigger: ACATTGCCAGGAAGAAACGCATCCCTGACACCCGTG...TACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTGGGTCTGTGCTTCTaGTCGGCTTTTGAGGAGAGG +
Preference number: 4 (lower is better)
Translates to: VWLNRGSNCPKAAASPSHLGLCF*SAFEER
Trigger: CCTCTCCTCAAAAGCCGAGCAGAAGCACAGACCCAG...GTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCACAGCTCAGACATGGCTaGGTCCGTCCTAGCCTCTGG +
Preference number: 4 (lower is better)
Translates to: GRRGVVWLNRGSNCPKAAQLRHG*VRPSLW
Trigger: CCAGAGGCTAGGACGGACGCAGCCATGTCTGAGCTG...TGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACCTCCCGGTTCCAGCTaGAGGCCTTTCGGCTCACTT +
Preference number: 4 (lower is better)
Translates to: VVLAGTPFHWEERSSLAKPPGSS*RPFGSL
Trigger: AAGTGAGCCGAAAGGCCTCCAGCTGGAACCGGGAGG...TTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GCATCCCCGAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATGAATGGCCCCTGGTCTCCAAAGCCTaGTGTGTCGATGACTGTCAG +
Preference number: 4 (lower is better)
Translates to: ASPRLGPLVPSGLVDEWPLVSKA*CVDDCQ
Trigger: CTGACAGTCATCGACACACCAGGCTTTGGAGACCAG...GGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTCGGGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp TCCCTACACAAGGACTGGGGTGCTGCTGACACAGATGATGGAGCAGGGTGGTGCGGATGCGTTTCTTCCTaGCAATGTTCACCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SLHKDWGAADTDDGAGWCGCVSS*QCSPPP
Trigger: AGGAGGAGGTGAACATTGCCAGGAAGAAACGCATCC...GCACCACCCTGCTCCATCATCTGTGTCAGCAGCACCCCAGTCCTTGTGTAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGCTGAGAGCAGTTTTCATTGTTaGTCTGGTCTCCAAAGCCTG +
Preference number: 4 (lower is better)
Translates to: GSNCPKAAASPSHLLRAESSFHC*SGLQSL
Trigger: CAGGCTTTGGAGACCAGATCAACAATGAAAACTGCT...CTCAGCCCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGTTGAGGTCCTGGAGGTaGGTCCTGATGACGAAGTCT +
Preference number: 4 (lower is better)
Translates to: SRVVLAGTPFHWEERSSLLRSWR*VLMTKS
Trigger: AGACTTCGTCATCAGGACTCACCTCCAGGACCTCAA...CAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACTTGAGGTCCTGGAGGTaGGTCCTGATGACGAAGTCT +
Preference number: 4 (lower is better)
Translates to: VWLNRGSNCPKAAASPSHLRSWR*VLMTKS
Trigger: AGACTTCGTCATCAGGACTCACCTCCAGGACCTCAA...GTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATACGGCCTCCATTGTCATTaGGCCTCTTGGCCCTGTAAG +
Preference number: 4 (lower is better)
Translates to: GEGEEKSGRGSNQPAWKYGLHCH*ASWPCK
Trigger: CTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCC...GTATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp ATAGACACAAGGGTGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCTGGCCCCGGGAGGCTTaGCGAACTCTGAATGAACTG +
Preference number: 4 (lower is better)
Translates to: IDTRVELHFQTPILQEPLWPREA*RTLNEL
Trigger: CAGTTCATTCAGAGTTCGTCAAGCCTCCCGGGGCCA...GAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCACCCTTGTGTCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GATGGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTACCGTGGTCAAAAGCTTaGCACTTTCCTGCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: DGAGWCWQELHSIGRRGVPWSKA*HFPACL
Trigger: CAGACAAGCAGGAAAGTGTCAAGCTTTTGACCACGG...TACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GCATCCCCGAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATGAATGGCCCGTGACAGCCTCCTTGTaGAAACTGGGCAATTCTTCC +
Preference number: 4 (lower is better)
Translates to: ASPRLGPLVPSGLVDEWPVTASL*KLGNSS
Trigger: GGAAGAATTGCCCAGTTTGCACAAGGAGGCTGTCAC...GGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTCGGGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCCCCTGGGCCTGCACTTaGCTCTTCCTGGAGAGGCTC +
Preference number: 4 (lower is better)
Translates to: QKAARKRETVLVCLTSPAPWACT*LFLERL
Trigger: GAGCCTCTCCAGGAAGAGGCAAGTGCAGGCCCAGGG...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp AGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTCAGAACAGGAAGCTCTaGGCTTCTGACCAGTCTGGA +
Preference number: 4 (lower is better)
Translates to: RVVLAGTPFHWEERSSLAQNRKL*ASDQSG
Trigger: TCCAGACTGGTCAGAAGCGCAGAGCTTCCTGTTCTG...AGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp TGCCCAATAGATGTGCTTCTTGAACAGAACACCCAGAGCAGCCCAAGCTACCAACAGCTCAGACATGGCTaGGTCCGTCCTAGCCTCTGG +
Preference number: 4 (lower is better)
Translates to: CPIDVLLEQNTQSSPSYQQLRHG*VRPSLW
Trigger: CCAGAGGCTAGGACGGACGCAGCCATGTCTGAGCTG...TTGGTAGCTTGGGCTGCTCTGGGTGTTCTGTTCAAGAAGCACATCTATTGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTGATGGGGGCTTTGCCCTCCGGATGCGTTTCTTCCTaGCAATGTTCACCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: VAAVRSQTFMHLMGALPSGCVSS*QCSPPP
Trigger: AGGAGGAGGTGAACATTGCCAGGAAGAAACGCATCC...GGAGGGCAAAGCCCCCATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CAGCTTTCTTCTCTGCTCCCCACGAATCTTCTGTTTCCCCAAGAAGTCCTAGCCAGATGTTCTGGGGCCTaGAGCCCTGTGTGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: QLSSLLPTNLLFPQEVLARCSGA*SPVWLH
Trigger: ATGCAGCCACACAGGGCTCCAGGCCCCAGAACATCT...GGCTAGGACTTCTTGGGGAAACAGAAGATTCGTGGGGAGCAGAGAAGAAAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAAAGCTATTGGGAGGCATaGAACTCAGGGACCCCGTGG +
Preference number: 4 (lower is better)
Translates to: VVLAGTPFHWEERSSLAKSYWEA*NSGTPW
Trigger: CCACGGGGTCCCTGAGTTCCATGCCTCCCAATAGCT...TTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGGCACTTGCCTCTTCCTaGAGAGGCTCTGGAAGGGAC +
Preference number: 4 (lower is better)
Translates to: VLAGTPFHWEERSSLAKQALASS*RGSGRD
Trigger: GTCCCTTCCAGAGCCTCTCCAGGAAGAGGCAAGTGC...CTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTCTACAGGTAAGTTGGTaGCCAGGTCCATCCTGGCAT +
Preference number: 4 (lower is better)
Translates to: RVVLAGTPFHWEERSSLALQVSW*PGPSWH
Trigger: ATGCCAGGATGGACCTGGCCACCAACTTACCTGTAG...AGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp ATAGACACAAGGGTGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCGCTTGGTCTCACTACTaGCTGGGTCTGGGCAGACCA +
Preference number: 4 (lower is better)
Translates to: IDTRVELHFQTPILQEPLAWSHY*LGLGRP
Trigger: TGGTCTGCCCAGACCCAGCCAGTAGTGAGACCAAGC...GAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCACCCTTGTGTCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACGGTGTTGACCAGTGTTaGCTTGCCCAGTCCACTCTG +
Preference number: 4 (lower is better)
Translates to: WCWQELHSIGRRGVVWLNGVDQC*LAQSTL
Trigger: CAGAGTGGACTGGGCAAGTCAACACTGGTCAACACC...GTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAAGGTGTTGACCAGTGTTaGCTTGCCCAGTCCACTCTG +
Preference number: 4 (lower is better)
Translates to: VVLAGTPFHWEERSSLAKGVDQC*LAQSTL
Trigger: CAGAGTGGACTGGGCAAGTCAACACTGGTCAACACC...TTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGGGATGGGAGTAGGAATAGTCAGGGGAGGTGGGAAGAGATCCCTCTTATTGCTTGCGAACCCTCTGCTTaGATTCCGACTTCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: GDGSRNSQGRWEEIPLIACEPSA*IPTSPP
Trigger: TGGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCA...AGCAATAAGAGGGATCTCTTCCCACCTCCCCTGACTATTCCTACTCCCATCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATACTGCGAACCCTCTGCTTaGATTCCGACTTCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: GEGEEKSGRGSNQPAWKYCEPSA*IPTSPP
Trigger: TGGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCA...GTATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GCTCAGCCACCAGTCCATGAAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCATGTGTGTTACTTCTTTaGGGTCCTGGAGGTGAGTCC +
Preference number: 4 (lower is better)
Translates to: AQPPVHEEYLQPQFVGGSCVLLL*GPGGES
Trigger: GGACTCACCTCCAGGACCTCAAAGAAGTAACACACA...TGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATGGACTGGTGGCTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACGGCCTCCATTGTCATTaGGCCTCTTGGCCCTGTAAG +
Preference number: 4 (lower is better)
Translates to: WCWQELHSIGRRGVVWLNGLHCH*ASWPCK
Trigger: CTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCC...GTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGCTTCCCCAGACCTCTTaGGTGAGGCGCACAGCTTTT +
Preference number: 4 (lower is better)
Translates to: VLAGTPFHWEERSSLAKQLPQTS*VRRTAF
Trigger: AAAAGCTGTGCGCCTCACTCAAGAGGTCTGGGGAAG...CTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000230365.2
ENSMUST00000238416.3
CDS-3UTR TCA 90 bp GTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAAGGGACACATCTGCAGTaGGCTTTTGGTGGGTGTGGT +
Preference number: 4 (lower is better)
Translates to: VVLAGTPFHWEERSSLAKGTHLQ*AFGGCG
Trigger: ACCACACCCACCAAAAGCTCACTGCAGATGTGTCCC...TTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTGCCTGCGAGGTGGGTTCCTTaGGGCTGTCTGTGGAAGCAC +
Preference number: 4 (lower is better)
Translates to: RILAAPVCGWVRSKKELPARWVP*GCLWKH
Trigger: GTGCTTCCACAGACAGCCTCAAGGAACCCACCTCGC...AGGCAACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAAGCGAGGTGGGTTCCTTaGGGCTGTCTGTGGAAGCAC +
Preference number: 4 (lower is better)
Translates to: GTPFHWEERSSLAKQRKQARWVP*GCLWKH
Trigger: GTGCTTCCACAGACAGCCTCAAGGAACCCACCTCGC...TTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp CAGCTTTCTTCTCTGCTCCCCACGAATCTTCTGTTTCCCCAAGAAGTCCTAGCCTCCCGAGGACCCTCTTaGCGTTCACTTGGTACTCCT +
Preference number: 4 (lower is better)
Translates to: QLSSLLPTNLLFPQEVLASRGPS*RSLGTP
Trigger: AGGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGA...GGCTAGGACTTCTTGGGGAAACAGAAGATTCGTGGGGAGCAGAGAAGAAAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCATCCCGAGGACCCTCTTaGCGTTCACTTGGTACTCCT +
Preference number: 4 (lower is better)
Translates to: GRRGVVWLNRGSNCPKAASRGPS*RSLGTP
Trigger: AGGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGA...TGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp AGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTTCCCTGGGCCTGCACTTaGCTCTTCCTGGAGAGGCTC +
Preference number: 4 (lower is better)
Translates to: RLFPSQSKFQWSAAETGFPWACT*LFLERL
Trigger: GAGCCTCTCCAGGAAGAGGCAAGTGCAGGCCCAGGG...AAAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCCCTCCCGGTTCCAGCTaGAGGCCTTTCGGCTCACTT +
Preference number: 4 (lower is better)
Translates to: QKAARKRETVLVCLTSPAPPGSS*RPFGSL
Trigger: AAGTGAGCCGAAAGGCCTCCAGCTGGAACCGGGAGG...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp TGGCTGAGGGAGGGTTCTAGAAAGACACAGTGTATGGGGCAGTGGCAGCCGTTCAGGGCAAACTCACAGTaGTTGAGGTTTTCCACTTCG +
Preference number: 4 (lower is better)
Translates to: WLREGSRKTQCMGQWQPFRANSQ*LRFSTS
Trigger: CGAAGTGGAAAACCTCAACCACTGTGAGTTTGCCCT...GAACGGCTGCCACTGCCCCATACACTGTGTCTTTCTAGAACCCTCCCTCAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GATGGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAAGGGCAAACTCACAGTaGTTGAGGTTTTCCACTTCG +
Preference number: 4 (lower is better)
Translates to: DGAGWCWQELHSIGRRGVRANSQ*LRFSTS
Trigger: CGAAGTGGAAAACCTCAACCACTGTGAGTTTGCCCT...TACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGAGATGTTCTGGGGCCTaGAGCCCTGTGTGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKRCSGA*SPVWLH
Trigger: ATGCAGCCACACAGGGCTCCAGGCCCCAGAACATCT...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GCTTTCTTCTCTGCTCCCCACGAATCTTCTGTTTCCCCAAGAAGTCCTAGCCTTAGCTTTTGGTGGGTGTaGTGCCCCAGCATGTGGCTG +
Preference number: 4 (lower is better)
Translates to: AFFSAPHESSVSPRSPSLSFWWV*CPSMWL
Trigger: CAGCCACATGCTGGGGCACCACACCCACCAAAAGCT...AAGGCTAGGACTTCTTGGGGAAACAGAAGATTCGTGGGGAGCAGAGAAGAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTGAGGTTTATTCCCTGTaGGTGTTCTGCTGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: RVVLAGTPFHWEERSSLAEVYSL*VFCWLW
Trigger: CCAAAGCCAGCAGAACACCCACAGGGAATAAACCTC...AGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp TGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCAGCTTTCTTCTCTGCTTGGTCTCACTACTaGCTGGGTCTGGGCAGACCA +
Preference number: 4 (lower is better)
Translates to: WSSIFRHQFCRSPSAFFSAWSHY*LGLGRP
Trigger: TGGTCTGCCCAGACCCAGCCAGTAGTGAGACCAAGC...AGAGAAGAAAGCTGAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTGATGGGGGCTTTGCCCTCCATTGTTGACAGTGTGTaGCTTGGTCTCACTACTGGC +
Preference number: 4 (lower is better)
Translates to: VAAVRSQTFMHLMGALPSIVDSV*LGLTTG
Trigger: GCCAGTAGTGAGACCAAGCCACACACTGTCAACAAT...GGAGGGCAAAGCCCCCATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTGCCTTCCATGGTCCTGGGCTaGGTCTGTGCTTCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: RILAAPVCGWVRSKKELPSMVLG*VCASAR
Trigger: CCGAGCAGAAGCACAGACCCAGCCCAGGACCATGGA...AGGCAACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp TCCCAGCATTATAAATTAAAACCTTCCCCAGACCTCTTGAGTGAGGCGCACAGCTCCATGGTCCTGGGCTaGGTCTGTGCTTCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: SQHYKLKPSPDLLSEAHSSMVLG*VCASAR
Trigger: CCGAGCAGAAGCACAGACCCAGCCCAGGACCATGGA...GCTGTGCGCCTCACTCAAGAGGTCTGGGGAAGGTTTTAATTTATAATGCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGACCCAGCATGTGGCTGTaGGAGAAAGATGTTCTGGGG +
Preference number: 4 (lower is better)
Translates to: WQELHSIGRRGVVWLNRGPSMWL*EKDVLG
Trigger: CCCCAGAACATCTTTCTCTCACAGCCACATGCTGGG...TCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATACCTCTGGCCAAAGCTTTaGCTGTGTCCAACCTGGTTA +
Preference number: 4 (lower is better)
Translates to: GEGEEKSGRGSNQPAWKYLWPKL*LCPTWL
Trigger: TAACCAGGTTGGACACAGTCAAAGCTTTGGCCAGAG...GTATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp CACACACACACTAGACAAAATACTGCACAAATACCAGACAGGCCTGGGGGACAGTCCCGAGGACCCTCTTaGCGTTCACTTGGTACTCCT +
Preference number: 4 (lower is better)
Translates to: HTHTRQNTAQIPDRPGGQSRGPS*RSLGTP
Trigger: AGGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGA...CTGTCCCCCAGGCCTGTCTGGTATTTGTGCAGTATTTTGTCTAGTGTGTGTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp TGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGATCCCGAGGACCCTCTTaGCGTTCACTTGGTACTCCT +
Preference number: 4 (lower is better)
Translates to: WQELHSIGRRGVVWLNRGSRGPS*RSLGTP
Trigger: AGGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGA...TCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTGATGGGGGCTTTGCCCTCCTCTGCTTGTCTCCAGTaGAGGAGAATCTGTCATTGT +
Preference number: 4 (lower is better)
Translates to: VAAVRSQTFMHLMGALPSSACLQ*RRICHC
Trigger: ACAATGACAGATTCTCCTGCACTGGAGACAAGCAGA...GGAGGGCAAAGCCCCCATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp AAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCGGTTCCCTTGGAGACCCTGGGCTGGGTCTGTaGTTCTGCTCGGCTTTTGAG +
Preference number: 4 (lower is better)
Translates to: KVLMQNEWLESNAGSLGDPGLGL*FCSAFE
Trigger: CTCAAAAGCCGAGCAGAAGCACAGACCCAGCCCAGG...GTCTCCAAGGGAACCGGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp ACAGTGTATGGGGCAGTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTGATGCTGGTCTCCAAAGCCTaGTGTGTCGATGACTGTCAG +
Preference number: 4 (lower is better)
Translates to: TVYGAVAAVRSQTFMHLMLVSKA*CVDDCQ
Trigger: CTGACAGTCATCGACACACCAGGCTTTGGAGACCAG...CATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCACTGCCCCATACACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGAGGGCAAACTCACAGTaGTTGAGGTTTTCCACTTCG +
Preference number: 4 (lower is better)
Translates to: SRVVLAGTPFHWEERSSLRANSQ*LRFSTS
Trigger: CGAAGTGGAAAACCTCAACCACTGTGAGTTTGCCCT...CAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp ACAGATAACTGTAAGCTACCAAGAAGGTGCTGGGAACTGAACCTGGGTCCTCTGCACGGGTTACTGTCGTaGCTTTCCTCTGTGTCCACG +
Preference number: 4 (lower is better)
Translates to: TDNCKLPRRCWELNLGPLHGLLS*LSSVST
Trigger: CGTGGACACAGAGGAAAGCCACGACAGTAACCCGTG...CAGAGGACCCAGGTTCAGTTCCCAGCACCTTCTTGGTAGCTTACAGTTATCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGCACGGGTTACTGTCGTaGCTTTCCTCTGTGTCCACG +
Preference number: 4 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKHGLLS*LSSVST
Trigger: CGTGGACACAGAGGAAAGCCACGACAGTAACCCGTG...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023095.14
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CACACACTAGACAAAATACTGCACAAATACCAGACAGGCCTGGGGGACAGAGCTGAGAGAAAGATGTTCTaGGGCCTGGAGCCCTGTGTG +
Preference number: 4 (lower is better)
Translates to: HTLDKILHKYQTGLGDRAERKMF*GLEPCV
Trigger: CACACAGGGCTCCAGGCCCCAGAACATCTTTCTCTC...AGCTCTGTCCCCCAGGCCTGTCTGGTATTTGTGCAGTATTTTGTCTAGTGTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AAGAGGGTGTCAGGTCCTCTGGAACTGGAGTCACAGATAACTGTAAGCTACCAAAGCTTTTGGTGGGTGTaGTGCCCCAGCATGTGGCTG +
Preference number: 4 (lower is better)
Translates to: KRVSGPLELESQITVSYQSFWWV*CPSMWL
Trigger: CAGCCACATGCTGGGGCACCACACCCACCAAAAGCT...TTGGTAGCTTACAGTTATCTGTGACTCCAGTTCCAGAGGACCTGACACCCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTCTAAGGGCCGCGTTTaGACATTCTGGTGTATTGTT +
Preference number: 4 (lower is better)
Translates to: GAGWCWQELHSIGRRGVVSKGRV*TFWCIV
Trigger: AACAATACACCAGAATGTCCAAACGCGGCCCTTAGA...AACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATACGGCTTTGGTAAGTTCTaGGTTCCCATGGCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: GEGEEKSGRGSNQPAWKYGFGKF*VPMAFR
Trigger: TCTGAAGGCCATGGGAACCCAGAACTTACCAAAGCC...GTATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp TGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACCTACAGGTAAGTTGGTaGCCAGGTCCATCCTGGCAT +
Preference number: 4 (lower is better)
Translates to: WCWQELHSIGRRGVVWLNLQVSW*PGPSWH
Trigger: ATGCCAGGATGGACCTGGCCACCAACTTACCTGTAG...GTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTAAACAGGTTGTCTACACACATACTCACTGGGCCAGCCACCAGTGGTGATTTTACAGCTCCATGGTCCTaGGCTGGGTCTGTGCTTCTG +
Preference number: 4 (lower is better)
Translates to: VNRLSTHILTGPATSGDFTAPWS*AGSVLL
Trigger: CAGAAGCACAGACCCAGCCCAGGACCATGGAGCTGT...AAAATCACCACTGGTGGCTGGCCCAGTGAGTATGTGTGTAGACAACCTGTTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CTGAGTACACGCATACATACACACACATGCATACACACACACAGGCACTCTCCAACAGCTCCATGGTCCTaGGCTGGGTCTGTGCTTCTG +
Preference number: 4 (lower is better)
Translates to: LSTRIHTHTCIHTHRHSPTAPWS*AGSVLL
Trigger: CAGAAGCACAGACCCAGCCCAGGACCATGGAGCTGT...TGGAGAGTGCCTGTGTGTGTGTATGCATGTGTGTGTATGTATGCGTGTACTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CTGAGTACACGCATACATACACACACATGCATACACACACACAGGCACTCTCCAGGTGTTGACCAGTGTTaGCTTGCCCAGTCCACTCTG +
Preference number: 4 (lower is better)
Translates to: LSTRIHTHTCIHTHRHSPGVDQC*LAQSTL
Trigger: CAGAGTGGACTGGGCAAGTCAACACTGGTCAACACC...TGGAGAGTGCCTGTGTGTGTGTATGCATGTGTGTGTATGTATGCGTGTACTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CACACACACACTAGACAAAATACTGCACAAATACCAGACAGGCCTGGGGGACAGCATGCCCAATCGCTTTaGTCTCCACTGTCTTGGGGA +
Preference number: 4 (lower is better)
Translates to: HTHTRQNTAQIPDRPGGQHAQSL*SPLSWG
Trigger: TCCCCAAGACAGTGGAGATCAAAGCGATTGGGCATG...CTGTCCCCCAGGCCTGTCTGGTATTTGTGCAGTATTTTGTCTAGTGTGTGTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCAGCTTTCTTCTCTTTGAGGTCCTGGAGGTaGGTCCTGATGACGAAGTCT +
Preference number: 4 (lower is better)
Translates to: WSSIFRHQFCRSPSAFFSLRSWR*VLMTKS
Trigger: AGACTTCGTCATCAGGACTCACCTCCAGGACCTCAA...AGAGAAGAAAGCTGAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp ACAGATAACTGTAAGCTACCAAGAAGGTGCTGGGAACTGAACCTGGGTCCTCTGTTGAGGTCCTGGAGGTaGGTCCTGATGACGAAGTCT +
Preference number: 4 (lower is better)
Translates to: TDNCKLPRRCWELNLGPLLRSWR*VLMTKS
Trigger: AGACTTCGTCATCAGGACTCACCTCCAGGACCTCAA...CAGAGGACCCAGGTTCAGTTCCCAGCACCTTCTTGGTAGCTTACAGTTATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CAGCTTTCTTCTCTGCTCCCCACGAATCTTCTGTTTCCCCAAGAAGTCCTAGCCTGTGTGTTACTTCTTTaGGGTCCTGGAGGTGAGTCC +
Preference number: 4 (lower is better)
Translates to: QLSSLLPTNLLFPQEVLACVLLL*GPGGES
Trigger: GGACTCACCTCCAGGACCTCAAAGAAGTAACACACA...GGCTAGGACTTCTTGGGGAAACAGAAGATTCGTGGGGAGCAGAGAAGAAAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TCCCAGCATTATAAATTAAAACCTTCCCCAGACCTCTTGAGTGAGGCGCACAGCGGCCTCCATTGTCATTaGGCCTCTTGGCCCTGTAAG +
Preference number: 4 (lower is better)
Translates to: SQHYKLKPSPDLLSEAHSGLHCH*ASWPCK
Trigger: CTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCC...GCTGTGCGCCTCACTCAAGAGGTCTGGGGAAGGTTTTAATTTATAATGCTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCGGGACACATCTGCAGTaGGCTTTTGGTGGGTGTGGT +
Preference number: 4 (lower is better)
Translates to: QKAARKRETVLVCLTSPAGTHLQ*AFGGCG
Trigger: ACCACACCCACCAAAAGCTCACTGCAGATGTGTCCC...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTGCCTTCCCTTCTCTGTGGGTaGCAGCCTCCTTGTGCAAAC +
Preference number: 4 (lower is better)
Translates to: RILAAPVCGWVRSKKELPSLLCG*QPPCAN
Trigger: GTTTGCACAAGGAGGCTGTCACCCACAGAGAAGGGA...AGGCAACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AAGGTAGCCAAGAAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCGGTTGGCCCCGGGAGGCTTaGCGAACTCTGAATGAACTG +
Preference number: 4 (lower is better)
Translates to: KVAKKVLMQNEWLESNAGWPREA*RTLNEL
Trigger: CAGTTCATTCAGAGTTCGTCAAGCCTCCCGGGGCCA...ACCGGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTTCTTGGCTACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GACGAGGAAGCAACCAACCAGCCTGGAAATACAGGGAAGGCGGGCACAGAAAGCACTTTCCTGCTTGTCTaGTGCTGCAGTTACCAAATT +
Preference number: 4 (lower is better)
Translates to: DEEATNQPGNTGKAGTESTFLLV*CCSYQI
Trigger: AATTTGGTAACTGCAGCATCAGACAAGCAGGAAAGT...GCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCTTCCTCGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp CCCCAGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGGTGACAGCCTCCTTGTaGAAACTGGGCAATTCTTCC +
Preference number: 4 (lower is better)
Translates to: PQAIPKSEQISVVSCRNWVTASL*KLGNSS
Trigger: GGAAGAATTGCCCAGTTTGCACAAGGAGGCTGTCAC...CCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GGGGATGGGAGTAGGAATAGTCAGGGGAGGTGGGAAGAGATCCCTCTTATTGCTAGGGCAAACTCACAGTaGTTGAGGTTTTCCACTTCG +
Preference number: 4 (lower is better)
Translates to: GDGSRNSQGRWEEIPLIARANSQ*LRFSTS
Trigger: CGAAGTGGAAAACCTCAACCACTGTGAGTTTGCCCT...AGCAATAAGAGGGATCTCTTCCCACCTCCCCTGACTATTCCTACTCCCATCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp TCCCAGCATTATAAATTAAAACCTTCCCCAGACCTCTTGAGTGAGGCGCACAGCCACGGGTTACTGTCGTaGCTTTCCTCTGTGTCCACG +
Preference number: 4 (lower is better)
Translates to: SQHYKLKPSPDLLSEAHSHGLLS*LSSVST
Trigger: CGTGGACACAGAGGAAAGCCACGACAGTAACCCGTG...GCTGTGCGCCTCACTCAAGAGGTCTGGGGAAGGTTTTAATTTATAATGCTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAAGGCTTTGGTAAGTTCTaGGTTCCCATGGCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: VVLAGTPFHWEERSSLAKGFGKF*VPMAFR
Trigger: TCTGAAGGCCATGGGAACCCAGAACTTACCAAAGCC...TTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AAGGTAGCCAAGAAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCGGTGCACTTGCCTCTTCCTaGAGAGGCTCTGGAAGGGAC +
Preference number: 4 (lower is better)
Translates to: KVAKKVLMQNEWLESNAGALASS*RGSGRD
Trigger: GTCCCTTCCAGAGCCTCTCCAGGAAGAGGCAAGTGC...ACCGGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTTCTTGGCTACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGCTGACCAGTCTGGACTaGTTTAGTGTAGGCATATTG +
Preference number: 4 (lower is better)
Translates to: SRVVLAGTPFHWEERSSLLTSLD*FSVGIL
Trigger: CAATATGCCTACACTAAACCAGTCCAGACTGGTCAG...CAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp ACAGATAACTGTAAGCTACCAAGAAGGTGCTGGGAACTGAACCTGGGTCCTCTGTGGTTATGCCCTGCTTaGCCTCATCCGATGTTGGCA +
Preference number: 4 (lower is better)
Translates to: TDNCKLPRRCWELNLGPLWLCPA*PHPMLA
Trigger: TGCCAACATCGGATGAGGCCAAGCAGGGCATAACCA...CAGAGGACCCAGGTTCAGTTCCCAGCACCTTCTTGGTAGCTTACAGTTATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CAA 72 bp CTACTTAGACTCTCCAACACCCACCATTCTTATCCCTaGCTGGCCCTAGGTGCCCAATCCCATGTCACCATA +
Preference number: 4 (lower is better)
Translates to: LLRLSNTHHSYP*LALGAQSHVTI
Trigger: TATGGTGACATGGGATTGGGCACCTAGGGCCAGCAAGGGATAAGAATGGTGGGTGTTGGAGAGTCTAAGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CAA 72 bp CCACTTCCCAGATGGCCATATTTTGGGGTAAACAGGTaGTCTACACACATACTCACTGGGCCAGCCACCAGT +
Preference number: 4 (lower is better)
Translates to: PLPRWPYFGVNR*STHILTGPATS
Trigger: ACTGGTGGCTGGCCCAGTGAGTATGTGTGTAGACAACCTGTTTACCCCAAAATATGGCCATCTGGGAAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAATGCGAACCCTCTGCTTaGATTCCGACTTCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: GTPFHWEERSSLAKQRKQCEPSA*IPTSPP
Trigger: TGGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCA...TTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GTAAACAGGTTGTCTACACACATACTCACTGGGCCAGCCACCAGTGGTGATTTTTTGAGGTCCTGGAGGTaGGTCCTGATGACGAAGTCT +
Preference number: 4 (lower is better)
Translates to: VNRLSTHILTGPATSGDFLRSWR*VLMTKS
Trigger: AGACTTCGTCATCAGGACTCACCTCCAGGACCTCAA...AAAATCACCACTGGTGGCTGGCCCAGTGAGTATGTGTGTAGACAACCTGTTTAC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGATGTGTGTTACTTCTTTaGGGTCCTGGAGGTGAGTCC +
Preference number: 4 (lower is better)
Translates to: WQELHSIGRRGVVWLNRGCVLLL*GPGGES
Trigger: GGACTCACCTCCAGGACCTCAAAGAAGTAACACACA...TCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CATGAAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTGGCCTCCATTGTCATTaGGCCTCTTGGCCCTGTAAG +
Preference number: 4 (lower is better)
Translates to: HEEYLQPQFVGGSEVRKSGLHCH*ASWPCK
Trigger: CTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCC...ACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AAGGTAGCCAAGAAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCGGTTCCCTTCTCTGTGGGTaGCAGCCTCCTTGTGCAAAC +
Preference number: 4 (lower is better)
Translates to: KVAKKVLMQNEWLESNAGSLLCG*QPPCAN
Trigger: GTTTGCACAAGGAGGCTGTCACCCACAGAGAAGGGA...ACCGGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTTCTTGGCTACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp AGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTGCCTCACGGGTGTCAGGGATaGGTTTCTTCCTGGCAATGT +
Preference number: 4 (lower is better)
Translates to: RILAAPVCGWVRSKKELPHGCQG*VSSWQC
Trigger: ACATTGCCAGGAAGAAACGCATCCCTGACACCCGTG...AGGCAACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp AAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCGGTTCCCTTGGAGACCACGGGTGTCAGGGATaGGTTTCTTCCTGGCAATGT +
Preference number: 4 (lower is better)
Translates to: KVLMQNEWLESNAGSLGDHGCQG*VSSWQC
Trigger: ACATTGCCAGGAAGAAACGCATCCCTGACACCCGTG...GTCTCCAAGGGAACCGGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp CAGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTCACGGGTGTCAGGGATaGGTTTCTTCCTGGCAATGT +
Preference number: 4 (lower is better)
Translates to: QAIPKSEQISVVSCRNWLHGCQG*VSSWQC
Trigger: ACATTGCCAGGAAGAAACGCATCCCTGACACCCGTG...AAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GTAAACAGGTTGTCTACACACATACTCACTGGGCCAGCCACCAGTGGTGATTTTCACGGGTGTCAGGGATaGGTTTCTTCCTGGCAATGT +
Preference number: 4 (lower is better)
Translates to: VNRLSTHILTGPATSGDFHGCQG*VSSWQC
Trigger: ACATTGCCAGGAAGAAACGCATCCCTGACACCCGTG...AAAATCACCACTGGTGGCTGGCCCAGTGAGTATGTGTGTAGACAACCTGTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp AAATTCTCCCATTTCCCCAGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGAATACCCCTGGGCCTaGACTTGCCTCTTCCTGGAG +
Preference number: 4 (lower is better)
Translates to: KFSHFPRLFPSQSKFQWSEYPWA*TCLFLE
Trigger: CTCCAGGAAGAGGCAAGTGCAGGCCCAGGGGTATTC...TGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTGGGGAAATGGGAGAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp ATAGACACAAGGGTGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCCAAAGCCAGTCTTCATaGTCTTCTTGCGCATCTGCT +
Preference number: 4 (lower is better)
Translates to: IDTRVELHFQTPILQEPLQSQSS*SSCASA
Trigger: AGCAGATGCGCAAGAAGACCATGAAGACTGGCTTTG...GAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCACCCTTGTGTCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGGTCTCCAAAGCCTaGTGTGTCGATGACTGTCAG +
Preference number: 4 (lower is better)
Translates to: GTPFHWEERSSLAKQRKQLVSKA*CVDDCQ
Trigger: CTGACAGTCATCGACACACCAGGCTTTGGAGACCAG...TTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCCTGGTCTCCAAAGCCTaGTGTGTCGATGACTGTCAG +
Preference number: 4 (lower is better)
Translates to: QKAARKRETVLVCLTSPALVSKA*CVDDCQ
Trigger: CTGACAGTCATCGACACACCAGGCTTTGGAGACCAG...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GCTTTCTTCTCTGCTCCCCACGAATCTTCTGTTTCCCCAAGAAGTCCTAGCCTTGGATGCGTTTCTTCCTaGCAATGTTCACCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: AFFSAPHESSVSPRSPSLGCVSS*QCSPPP
Trigger: AGGAGGAGGTGAACATTGCCAGGAAGAAACGCATCC...AAGGCTAGGACTTCTTGGGGAAACAGAAGATTCGTGGGGAGCAGAGAAGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GATCCGCTGTTTGACAGTGACCCCAACATAGACACAAGGGTGGAGCTCCATTTTGGATGCGTTTCTTCCTaGCAATGTTCACCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: DPLFDSDPNIDTRVELHFGCVSS*QCSPPP
Trigger: AGGAGGAGGTGAACATTGCCAGGAAGAAACGCATCC...AAAATGGAGCTCCACCCTTGTGTCTATGTTGGGGTCACTGTCAAACAGCGGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp TGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATAAGGGCAAACTCACAGTaGTTGAGGTTTTCCACTTCG +
Preference number: 4 (lower is better)
Translates to: WGGRREIRTRKQPTSLEIRANSQ*LRFSTS
Trigger: CGAAGTGGAAAACCTCAACCACTGTGAGTTTGCCCT...TATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGGCAAACTCACAGTaGTTGAGGTTTTCCACTTCG +
Preference number: 4 (lower is better)
Translates to: VLAGTPFHWEERSSLAKQRANSQ*LRFSTS
Trigger: CGAAGTGGAAAACCTCAACCACTGTGAGTTTGCCCT...CTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTTATCTGGGAATACCCCTaGGCCTGCACTTGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: RLFPSQSKFQWSAAETGFIWEYP*ACTCLF
Trigger: GAAGAGGCAAGTGCAGGCCCAGGGGTATTCCCAGAT...AAAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATACTGTCAGCTTCATTTTaGCACCACCTTCCTCTATCA +
Preference number: 4 (lower is better)
Translates to: WGGRREIRTRKQPTSLEILSASF*HHLPLS
Trigger: TGATAGAGGAAGGTGGTGTCAAAATGAAGCTGACAG...TATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCAAGCAGTTTTCATTGTTaGTCTGGTCTCCAAAGCCTG +
Preference number: 4 (lower is better)
Translates to: GRRGVVWLNRGSNCPKAASSFHC*SGLQSL
Trigger: CAGGCTTTGGAGACCAGATCAACAATGAAAACTGCT...TGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTTTTCGTACTGTTCGTTaGTGTATTTCTCAATGGGCT +
Preference number: 4 (lower is better)
Translates to: RVVLAGTPFHWEERSSLAFRTVR*CISQWA
Trigger: AGCCCATTGAGAAATACATCAACGAACAGTACGAAA...AGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp ATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCTGTGTGTTACTTCTTTaGGGTCCTGGAGGTGAGTCC +
Preference number: 4 (lower is better)
Translates to: IGRRGVVWLNRGSNCPKACVLLL*GPGGES
Trigger: GGACTCACCTCCAGGACCTCAAAGAAGTAACACACA...GGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp TGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATAAGCTTGACACTTTCCTaGTTGTCTGATGCTGCAGTT +
Preference number: 4 (lower is better)
Translates to: WGGRREIRTRKQPTSLEISLTLS*LSDAAV
Trigger: AACTGCAGCATCAGACAAGCAGGAAAGTGTCAAGCT...TATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CATGAAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTGCCTTTCGGCTCACTTaGGACTTGAAGAGGGTGTTG +
Preference number: 4 (lower is better)
Translates to: HEEYLQPQFVGGSEVRKSAFRLT*DLKRVL
Trigger: CAACACCCTCTTCAAGTCCCAAGTGAGCCGAAAGGC...ACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATACCTTTACCTCCCGGTTCCAGCTaGAGGCCTTTCGGCTCACTT +
Preference number: 4 (lower is better)
Translates to: LASGSPPCIMNHPYKIPLPPGSS*RPFGSL
Trigger: AAGTGAGCCGAAAGGCCTCCAGCTGGAACCGGGAGG...TAAAGGTATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CATGAAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTCTGGTCTCCAAAGCCTaGTGTGTCGATGACTGTCAG +
Preference number: 4 (lower is better)
Translates to: HEEYLQPQFVGGSEVRKSLVSKA*CVDDCQ
Trigger: CTGACAGTCATCGACACACCAGGCTTTGGAGACCAG...ACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp ATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGGATGCGTTTCTTCCTaGCAATGTTCACCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: IGRRGVVWLNRGSNCPKAGCVSS*QCSPPP
Trigger: AGGAGGAGGTGAACATTGCCAGGAAGAAACGCATCC...GGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGGCACAACTGAATCCATaGCTGTACCTAGTCTGCTTG +
Preference number: 4 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKAQLNP*LYLVCL
Trigger: CAAGCAGACTAGGTACAGCCATGGATTCAGTTGTGC...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GTTAAGGTAGCCAAGAAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCCATGCCCAATCGCTTTaGTCTCCACTGTCTTGGGGA +
Preference number: 4 (lower is better)
Translates to: VKVAKKVLMQNEWLESNAHAQSL*SPLSWG
Trigger: TCCCCAAGACAGTGGAGATCAAAGCGATTGGGCATG...GGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTTCTTGGCTACCTTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AGAAGGCTAAATGTATGGCTGTGGGTATTCCTGGGAACATCTACAGGATTGGATCATGCCCAATCGCTTTaGTCTCCACTGTCTTGGGGA +
Preference number: 4 (lower is better)
Translates to: RRLNVWLWVFLGTSTGLDHAQSL*SPLSWG
Trigger: TCCCCAAGACAGTGGAGATCAAAGCGATTGGGCATG...ATCCAATCCTGTAGATGTTCCCAGGAATACCCACAGCCATACATTTAGCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GATCCGCTGTTTGACAGTGACCCCAACATAGACACAAGGGTGGAGCTCCATTTTCTGTCAGCTTCATTTTaGCACCACCTTCCTCTATCA +
Preference number: 4 (lower is better)
Translates to: DPLFDSDPNIDTRVELHFLSASF*HHLPLS
Trigger: TGATAGAGGAAGGTGGTGTCAAAATGAAGCTGACAG...AAAATGGAGCTCCACCCTTGTGTCTATGTTGGGGTCACTGTCAAACAGCGGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CACACACACACTAGACAAAATACTGCACAAATACCAGACAGGCCTGGGGGACAGCTGTCAGCTTCATTTTaGCACCACCTTCCTCTATCA +
Preference number: 4 (lower is better)
Translates to: HTHTRQNTAQIPDRPGGQLSASF*HHLPLS
Trigger: TGATAGAGGAAGGTGGTGTCAAAATGAAGCTGACAG...CTGTCCCCCAGGCCTGTCTGGTATTTGTGCAGTATTTTGTCTAGTGTGTGTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCAGCTTTCTTCTCTAGCAGTTTTCATTGTTaGTCTGGTCTCCAAAGCCTG +
Preference number: 4 (lower is better)
Translates to: WSSIFRHQFCRSPSAFFSSSFHC*SGLQSL
Trigger: CAGGCTTTGGAGACCAGATCAACAATGAAAACTGCT...AGAGAAGAAAGCTGAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp TGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCAGCTTTCTTCTCTGTCTTCTTGCGCATCTaGTCGATAATGGTGTCAATG +
Preference number: 4 (lower is better)
Translates to: WSSIFRHQFCRSPSAFFSVFLRI*SIMVSM
Trigger: CATTGACACCATTATCGAGCAGATGCGCAAGAAGAC...AGAGAAGAAAGCTGAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp ACAGATAACTGTAAGCTACCAAGAAGGTGCTGGGAACTGAACCTGGGTCCTCTGAGCTTGACACTTTCCTaGTTGTCTGATGCTGCAGTT +
Preference number: 4 (lower is better)
Translates to: TDNCKLPRRCWELNLGPLSLTLS*LSDAAV
Trigger: AACTGCAGCATCAGACAAGCAGGAAAGTGTCAAGCT...CAGAGGACCCAGGTTCAGTTCCCAGCACCTTCTTGGTAGCTTACAGTTATCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp TGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCAGCTTTCTTCTCTTCTGCTTGTCTCCAGTaGAGGAGAATCTGTCATTGT +
Preference number: 4 (lower is better)
Translates to: WSSIFRHQFCRSPSAFFSSACLQ*RRICHC
Trigger: ACAATGACAGATTCTCCTGCACTGGAGACAAGCAGA...AGAGAAGAAAGCTGAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CAACATCTACATGACCAGTCTGAGTGTCTGTTTGGCTTGTTTTCAATTGGGAAATCTGCAGTGAGCTTTTaGTGGGTGTGGTGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: QHLHDQSECLFGLFSIGKSAVSF*WVWCPS
Trigger: GCTGGGGCACCACACCCACCAAAAGCTCACTGCAGA...TTTCCCAATTGAAAACAAGCCAAACAGACACTCAGACTGGTCATGTAGATGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTCGCGTTTGGACATTCTaGTGTATTGTTAAGGAAATA +
Preference number: 4 (lower is better)
Translates to: RVVLAGTPFHWEERSSLARVWTF*CIVKEI
Trigger: TATTTCCTTAACAATACACCAGAATGTCCAAACGCG...AGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp TTTCCTCCACCTAAAGTTTGCCTCATTTGCCCAATAGATGTGCTTCTTGAACAGATCTGGGAATACCCCTaGGCCTGCACTTGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: FPPPKVCLICPIDVLLEQIWEYP*ACTCLF
Trigger: GAAGAGGCAAGTGCAGGCCCAGGGGTATTCCCAGAT...CTGTTCAAGAAGCACATCTATTGGGCAAATGAGGCAAACTTTAGGTGGAGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGCTGACCAGTCTGGACTaGTTTAGTGTAGGCATATTG +
Preference number: 4 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKLTSLD*FSVGIL
Trigger: CAATATGCCTACACTAAACCAGTCCAGACTGGTCAG...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CTGAGTACACGCATACATACACACACATGCATACACACACACAGGCACTCTCCAATTGTTGACAGTGTGTaGCTTGGTCTCACTACTGGC +
Preference number: 4 (lower is better)
Translates to: LSTRIHTHTCIHTHRHSPIVDSV*LGLTTG
Trigger: GCCAGTAGTGAGACCAAGCCACACACTGTCAACAAT...TGGAGAGTGCCTGTGTGTGTGTATGCATGTGTGTGTATGTATGCGTGTACTCAG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTGCCTAGCAGTTTTCATTGTTaGTCTGGTCTCCAAAGCCTG +
Preference number: 4 (lower is better)
Translates to: RILAAPVCGWVRSKKELPSSFHC*SGLQSL
Trigger: CAGGCTTTGGAGACCAGATCAACAATGAAAACTGCT...AGGCAACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAAAGCAGTTTTCATTGTTaGTCTGGTCTCCAAAGCCTG +
Preference number: 4 (lower is better)
Translates to: GTPFHWEERSSLAKQRKQSSFHC*SGLQSL
Trigger: CAGGCTTTGGAGACCAGATCAACAATGAAAACTGCT...TTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GTGACACTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATATGCGAACCCTCTGCTTaGATTCCGACTTCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: VTLASGSPPCIMNHPYKICEPSA*IPTSPP
Trigger: TGGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCA...TATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAGTGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp GTGACACTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATATTGAGGTCCTGGAGGTaGGTCCTGATGACGAAGTCT +
Preference number: 4 (lower is better)
Translates to: VTLASGSPPCIMNHPYKILRSWR*VLMTKS
Trigger: AGACTTCGTCATCAGGACTCACCTCCAGGACCTCAA...TATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAGTGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CAACATCTACATGACCAGTCTGAGTGTCTGTTTGGCTTGTTTTCAATTGGGAAACCCAGCATGTGGCTGTaGGAGAAAGATGTTCTGGGG +
Preference number: 4 (lower is better)
Translates to: QHLHDQSECLFGLFSIGKPSMWL*EKDVLG
Trigger: CCCCAGAACATCTTTCTCTCACAGCCACATGCTGGG...TTTCCCAATTGAAAACAAGCCAAACAGACACTCAGACTGGTCATGTAGATGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAACTTTCCTGCTTGTCTaGTGCTGCAGTTACCAAATT +
Preference number: 4 (lower is better)
Translates to: WQELHSIGRRGVVWLNRGTFLLV*CCSYQI
Trigger: AATTTGGTAACTGCAGCATCAGACAAGCAGGAAAGT...TCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCGTCTTCTTGCGCATCTaGTCGATAATGGTGTCAATG +
Preference number: 4 (lower is better)
Translates to: QKAARKRETVLVCLTSPAVFLRI*SIMVSM
Trigger: CATTGACACCATTATCGAGCAGATGCGCAAGAAGAC...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAAGTCTTCTTGCGCATCTaGTCGATAATGGTGTCAATG +
Preference number: 4 (lower is better)
Translates to: GTPFHWEERSSLAKQRKQVFLRI*SIMVSM
Trigger: CATTGACACCATTATCGAGCAGATGCGCAAGAAGAC...TTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GTAAACAGGTTGTCTACACACATACTCACTGGGCCAGCCACCAGTGGTGATTTTGTCTTCTTGCGCATCTaGTCGATAATGGTGTCAATG +
Preference number: 4 (lower is better)
Translates to: VNRLSTHILTGPATSGDFVFLRI*SIMVSM
Trigger: CATTGACACCATTATCGAGCAGATGCGCAAGAAGAC...AAAATCACCACTGGTGGCTGGCCCAGTGAGTATGTGTGTAGACAACCTGTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp CAGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTGTCTTCTTGCGCATCTaGTCGATAATGGTGTCAATG +
Preference number: 4 (lower is better)
Translates to: QAIPKSEQISVVSCRNWLVFLRI*SIMVSM
Trigger: CATTGACACCATTATCGAGCAGATGCGCAAGAAGAC...AAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CAACATCTACATGACCAGTCTGAGTGTCTGTTTGGCTTGTTTTCAATTGGGAAAGAGAGAAAGATGTTCTaGGGCCTGGAGCCCTGTGTG +
Preference number: 4 (lower is better)
Translates to: QHLHDQSECLFGLFSIGKERKMF*GLEPCV
Trigger: CACACAGGGCTCCAGGCCCCAGAACATCTTTCTCTC...TTTCCCAATTGAAAACAAGCCAAACAGACACTCAGACTGGTCATGTAGATGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATACCTTTAAGTTCTGGGTTCCCATaGCCTTCAGAGGAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: LASGSPPCIMNHPYKIPLSSGFP*PSEEVL
Trigger: CAGGACCTCCTCTGAAGGCCATGGGAACCCAGAACT...TAAAGGTATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp ATAGACACAAGGGTGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCTCACTTTTCCTGACTTaGATACTACAGGTAAGTTGG +
Preference number: 4 (lower is better)
Translates to: IDTRVELHFQTPILQEPLSLFLT*ILQVSW
Trigger: CCAACTTACCTGTAGTATCCAAGTCAGGAAAAGTGA...GAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCACCCTTGTGTCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CATGAAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTGCACAACTGAATCCATaGCTGTACCTAGTCTGCTTG +
Preference number: 4 (lower is better)
Translates to: HEEYLQPQFVGGSEVRKSAQLNP*LYLVCL
Trigger: CAAGCAGACTAGGTACAGCCATGGATTCAGTTGTGC...ACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AAAAGGTCAGAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAGGTGTTGACCAGTGTTaGCTTGCCCAGTCCACTCTG +
Preference number: 4 (lower is better)
Translates to: KRSETGRKWGECMNIYEEGVDQC*LAQSTL
Trigger: CAGAGTGGACTGGGCAAGTCAACACTGGTCAACACC...TTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTCTGACCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp TTTCCTCCACCTAAAGTTTGCCTCATTTGCCCAATAGATGTGCTTCTTGAACAGTGTGTGTTACTTCTTTaGGGTCCTGGAGGTGAGTCC +
Preference number: 4 (lower is better)
Translates to: FPPPKVCLICPIDVLLEQCVLLL*GPGGES
Trigger: GGACTCACCTCCAGGACCTCAAAGAAGTAACACACA...CTGTTCAAGAAGCACATCTATTGGGCAAATGAGGCAAACTTTAGGTGGAGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATACCTTTACCCAGACCTCTTGAGTaGGGCGCACAGCTTTTTGTT +
Preference number: 4 (lower is better)
Translates to: LASGSPPCIMNHPYKIPLPRPLE*GAQLFV
Trigger: AACAAAAAGCTGTGCGCCTCACTCAAGAGGTCTGGG...TAAAGGTATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000230365.2
ENSMUST00000238416.3
CDS-3UTR TCA 90 bp CTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATACCTTTACTGACCTGTGGCACATaGGCCATGAGTGGCAAACTT +
Preference number: 4 (lower is better)
Translates to: LASGSPPCIMNHPYKIPLLTCGT*AMSGKL
Trigger: AAGTTTGCCACTCATGGCTCATGTGCCACAGGTCAG...TAAAGGTATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AGAAGGCTAAATGTATGGCTGTGGGTATTCCTGGGAACATCTACAGGATTGGATCAAAGCCAGTCTTCATaGTCTTCTTGCGCATCTGCT +
Preference number: 4 (lower is better)
Translates to: RRLNVWLWVFLGTSTGLDQSQSS*SSCASA
Trigger: AGCAGATGCGCAAGAAGACCATGAAGACTGGCTTTG...ATCCAATCCTGTAGATGTTCCCAGGAATACCCACAGCCATACATTTAGCCTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CTAAACAGAATTTTGTGGTATCTTCCCTTTCCTATGGCTAAATGGCTTTCCTTAAGCTATTGGGAGGCATaGAACTCAGGGACCCCGTGG +
Preference number: 4 (lower is better)
Translates to: LNRILWYLPFPMAKWLSLSYWEA*NSGTPW
Trigger: CCACGGGGTCCCTGAGTTCCATGCCTCCCAATAGCT...TAAGGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAAAATTCTGTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTTTCTAAGGGCCGCGTTTaGACATTCTGGTGTATTGTT +
Preference number: 4 (lower is better)
Translates to: RLFPSQSKFQWSAAETGFSKGRV*TFWCIV
Trigger: AACAATACACCAGAATGTCCAAACGCGGCCCTTAGA...AAAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTGCCTTTTCGTACTGTTCGTTaGTGTATTTCTCAATGGGCT +
Preference number: 4 (lower is better)
Translates to: RILAAPVCGWVRSKKELPFRTVR*CISQWA
Trigger: AGCCCATTGAGAAATACATCAACGAACAGTACGAAA...AGGCAACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AAGAGGGTGTCAGGTCCTCTGGAACTGGAGTCACAGATAACTGTAAGCTACCAATTTCGTACTGTTCGTTaGTGTATTTCTCAATGGGCT +
Preference number: 4 (lower is better)
Translates to: KRVSGPLELESQITVSYQFRTVR*CISQWA
Trigger: AGCCCATTGAGAAATACATCAACGAACAGTACGAAA...TTGGTAGCTTACAGTTATCTGTGACTCCAGTTCCAGAGGACCTGACACCCTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CAGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTTTTCGTACTGTTCGTTaGTGTATTTCTCAATGGGCT +
Preference number: 4 (lower is better)
Translates to: QAIPKSEQISVVSCRNWLFRTVR*CISQWA
Trigger: AGCCCATTGAGAAATACATCAACGAACAGTACGAAA...AAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp ATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCTTTCGTACTGTTCGTTaGTGTATTTCTCAATGGGCT +
Preference number: 4 (lower is better)
Translates to: IGRRGVVWLNRGSNCPKAFRTVR*CISQWA
Trigger: AGCCCATTGAGAAATACATCAACGAACAGTACGAAA...GGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CAACATCTACATGACCAGTCTGAGTGTCTGTTTGGCTTGTTTTCAATTGGGAAACCGTGGTCAAAAGCTTaGCACTTTCCTGCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: QHLHDQSECLFGLFSIGKPWSKA*HFPACL
Trigger: CAGACAAGCAGGAAAGTGTCAAGCTTTTGACCACGG...TTTCCCAATTGAAAACAAGCCAAACAGACACTCAGACTGGTCATGTAGATGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp CTAAACAGAATTTTGTGGTATCTTCCCTTTCCTATGGCTAAATGGCTTTCCTTATCCCGAGGACCCTCTTaGCGTTCACTTGGTACTCCT +
Preference number: 4 (lower is better)
Translates to: LNRILWYLPFPMAKWLSLSRGPS*RSLGTP
Trigger: AGGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGA...TAAGGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAAAATTCTGTTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp TGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACCTTTATCTAGTTTTGTaGTCACAACAGACACATTTG +
Preference number: 4 (lower is better)
Translates to: WCWQELHSIGRRGVVWLNLYLVL*SQQTHL
Trigger: CAAATGTGTCTGTTGTGAGCACAAAACTAGATAAAG...GTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp ACAGATAACTGTAAGCTACCAAGAAGGTGCTGGGAACTGAACCTGGGTCCTCTGCGCGTTTGGACATTCTaGTGTATTGTTAAGGAAATA +
Preference number: 4 (lower is better)
Translates to: TDNCKLPRRCWELNLGPLRVWTF*CIVKEI
Trigger: TATTTCCTTAACAATACACCAGAATGTCCAAACGCG...CAGAGGACCCAGGTTCAGTTCCCAGCACCTTCTTGGTAGCTTACAGTTATCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp GTAAACAGGTTGTCTACACACATACTCACTGGGCCAGCCACCAGTGGTGATTTTCTGTGCCTATATGTCTaGCTTTATCTAGTTTTGTGC +
Preference number: 4 (lower is better)
Translates to: VNRLSTHILTGPATSGDFLCLYV*LYLVLC
Trigger: GCACAAAACTAGATAAAGCCAGACATATAGGCACAG...AAAATCACCACTGGTGGCTGGCCCAGTGAGTATGTGTGTAGACAACCTGTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCGGTTCCCTTGGAGACTCACTTTTCCTGACTTaGATACTACAGGTAAGTTGG +
Preference number: 4 (lower is better)
Translates to: KVLMQNEWLESNAGSLGDSLFLT*ILQVSW
Trigger: CCAACTTACCTGTAGTATCCAAGTCAGGAAAAGTGA...GTCTCCAAGGGAACCGGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp AAAAGGTCAGAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAATGTGTGTTACTTCTTTaGGGTCCTGGAGGTGAGTCC +
Preference number: 4 (lower is better)
Translates to: KRSETGRKWGECMNIYEECVLLL*GPGGES
Trigger: GGACTCACCTCCAGGACCTCAAAGAAGTAACACACA...TTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTCTGACCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATACCTTTACAAAGCCAGTCTTCATaGTCTTCTTGCGCATCTGCT +
Preference number: 4 (lower is better)
Translates to: LASGSPPCIMNHPYKIPLQSQSS*SSCASA
Trigger: AGCAGATGCGCAAGAAGACCATGAAGACTGGCTTTG...TAAAGGTATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp AAAAGGTCAGAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAGAGGTTTATTCCCTGTaGGTGTTCTGCTGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: KRSETGRKWGECMNIYEEEVYSL*VFCWLW
Trigger: CCAAAGCCAGCAGAACACCCACAGGGAATAAACCTC...TTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTCTGACCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATACCTTTACTGTCAGCTTCATTTTaGCACCACCTTCCTCTATCA +
Preference number: 4 (lower is better)
Translates to: LASGSPPCIMNHPYKIPLLSASF*HHLPLS
Trigger: TGATAGAGGAAGGTGGTGTCAAAATGAAGCTGACAG...TAAAGGTATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR TCA 90 bp CAACATCTACATGACCAGTCTGAGTGTCTGTTTGGCTTGTTTTCAATTGGGAAACTGTCAGCTTCATTTTaGCACCACCTTCCTCTATCA +
Preference number: 4 (lower is better)
Translates to: QHLHDQSECLFGLFSIGKLSASF*HHLPLS
Trigger: TGATAGAGGAAGGTGGTGTCAAAATGAAGCTGACAG...TTTCCCAATTGAAAACAAGCCAAACAGACACTCAGACTGGTCATGTAGATGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp CTAAACAGAATTTTGTGGTATCTTCCCTTTCCTATGGCTAAATGGCTTTCCTTACAAAGCCAGTCTTCATaGTCTTCTTGCGCATCTGCT +
Preference number: 4 (lower is better)
Translates to: LNRILWYLPFPMAKWLSLQSQSS*SSCASA
Trigger: AGCAGATGCGCAAGAAGACCATGAAGACTGGCTTTG...TAAGGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAAAATTCTGTTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CCA 90 bp TTTCCTCCACCTAAAGTTTGCCTCATTTGCCCAATAGATGTGCTTCTTGAACAGCTGTGCCTATATGTCTaGCTTTATCTAGTTTTGTGC +
Preference number: 4 (lower is better)
Translates to: FPPPKVCLICPIDVLLEQLCLYV*LYLVLC
Trigger: GCACAAAACTAGATAAAGCCAGACATATAGGCACAG...CTGTTCAAGAAGCACATCTATTGGGCAAATGAGGCAAACTTTAGGTGGAGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
3UTR CAA 72 bp GGTGGCATAGTGGATAGATCAGTTCTAAACAGAATTTaGTGGTATCTTCCCTTTCCTATGGCTAAATGGCTT +
Preference number: 4 (lower is better)
Translates to: GGIVDRSVLNRI*WYLPFPMAKWL
Trigger: AAGCCATTTAGCCATAGGAAAGGGAAGATACCACAAAATTCTGTTTAGAACTGATCTATCCACTATGCCACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR GCA 90 bp GAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAAGGAGGCAACTTTATCTAGTTTTGTaGTCACAACAGACACATTTG +
Preference number: 4 (lower is better)
Translates to: ETGRKWGECMNIYEERRQLYLVL*SQQTHL
Trigger: CAAATGTGTCTGTTGTGAGCACAAAACTAGATAAAG...TTGCCTCCTTTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS GCA 90 bp CACCGCCGGCTTAGGCCTGGGCTCAGGTACCAGCTCAGACATGGCTaGGTCCGTCCTAGCCTCTGGGAGCCCTTTGGGTTCTGGGGCCAG +
Preference number: 5 (lower is better)
Translates to: HRRLRPGLRYQLRHG*VRPSLWEPFGFWGQ
Trigger: CTGGCCCCAGAACCCAAAGGGCTCCCAGAGGCTAGGACGGACGCAGCCATGTCTGAGCTGGTACCTGAGCCCAGGCCTAAGCCGGCGGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 90 bp GGAGCCCTTTGGGTTCTGGGGCCAGGTCCAGCGAGGTGGGTTCCTTaGGGCTGTCTGTGGAAGCACCCACAGCTCCATGGTCCTGGGCTG +
Preference number: 5 (lower is better)
Translates to: GALWVLGPGPARWVP*GCLWKHPQLHGPGL
Trigger: CAGCCCAGGACCATGGAGCTGTGGGTGCTTCCACAGACAGCCTCAAGGAACCCACCTCGCTGGACCTGGCCCCAGAACCCAAAGGGCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 90 bp TGGGAATACCCCTGGGCCTGCACTTGCCTCTTCCTGGAGAGGCTCTaGAAGGGACTTGTCCCATGGGACCTGGCCCCGGGAGGCTTGACG +
Preference number: 5 (lower is better)
Translates to: WEYPWACTCLFLERL*KGLVPWDLAPGGLT
Trigger: CGTCAAGCCTCCCGGGGCCAGGTCCCATGGGACAAGTCCCTTCCAGAGCCTCTCCAGGAAGAGGCAAGTGCAGGCCCAGGGGTATTCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGCTGAGAGGCTCCCGAGGACCCTCTaGCCGTTCACTTGGTACTCC +
Preference number: 5 (lower is better)
Translates to: SNCPKAAASPSHLLRAERLPRTL*PFTWYS
Trigger: GGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGAG...CCTCTCAGCCCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGCTGAGGGAGGGAGGCCTCCATaGTCATTGAGCCTCTTGGCC +
Preference number: 5 (lower is better)
Translates to: GSNCPKAAASPSHLLRAEGGRPP*SLSLLA
Trigger: GGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCC...CTCAGCCCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGCTGAGTTCACTTGGTACTCCTaGTCACTCCCCACCACGGCG +
Preference number: 5 (lower is better)
Translates to: GSNCPKAAASPSHLLRAEFTWYS*SLPTTA
Trigger: CGCCGTGGTGGGGAGTGACAAGGAGTACCAAGTGAA...CTCAGCCCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTCCCCTGGGCCTGCACTaGCCTCTTCCTGGAGAGGCT +
Preference number: 5 (lower is better)
Translates to: RVVLAGTPFHWEERSSLAPLGLH*PLPGEA
Trigger: AGCCTCTCCAGGAAGAGGCAAGTGCAGGCCCAGGGG...AGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GACGAGGAAGCAACCAACCAGCCTGGAAATACAGGGAAGGCGGGCACAGAAAGCCTCCCGAGGACCCTCTaGCCGTTCACTTGGTACTCC +
Preference number: 5 (lower is better)
Translates to: DEEATNQPGNTGKAGTESLPRTL*PFTWYS
Trigger: GGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGAG...GCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCTTCCTCGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGCTCCCGAGGACCCTCTaGCCGTTCACTTGGTACTCC +
Preference number: 5 (lower is better)
Translates to: NRGSNCPKAAASPSHLLRLPRTL*PFTWYS
Trigger: GGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGAG...CCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GCATCCCCGAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATGAATGGCCCCTCCCGAGGACCCTCTaGCCGTTCACTTGGTACTCC +
Preference number: 5 (lower is better)
Translates to: ASPRLGPLVPSGLVDEWPLPRTL*PFTWYS
Trigger: GGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGAG...GGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTCGGGGATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTGGAGGGAGGCCTCCATaGTCATTGAGCCTCTTGGCC +
Preference number: 5 (lower is better)
Translates to: GAGWCWQELHSIGRRGVVGGRPP*SLSLLA
Trigger: GGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCC...AACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 90 bp CTGTCATTGTGTCCGGCCTGCCTACGGTGGCTCTGGCCAAAGCTTTaGCTGTGTCCAACCTGGTTATGCCCTGCTTGGCCTCATCCGATG +
Preference number: 5 (lower is better)
Translates to: LSLCPACLRWLWPKL*LCPTWLCPAWPHPM
Trigger: CATCGGATGAGGCCAAGCAGGGCATAACCAGGTTGGACACAGTCAAAGCTTTGGCCAGAGCCACCGTAGGCAGGCCGGACACAATGACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS GCA 90 bp GCTCACAACAGACACATTTGCAGCCGAGGTAGCCCTTTGGAGGTATaGTCGGGATCTGGGAATACCCCTGGGCCTGCACTTGCCTCTTCC +
Preference number: 5 (lower is better)
Translates to: AHNRHICSRGSPLEV*SGSGNTPGPALASS
Trigger: GGAAGAGGCAAGTGCAGGCCCAGGGGTATTCCCAGATCCCGAGCATACCTCCAAAGGGCTACCTCGGCTGCAAATGTGTCTGTTGTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGCTGAGTTGCGAACCCTCTGCTaGAATTCCGACTTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: GSNCPKAAASPSHLLRAELRTLC*NSDFSS
Trigger: GGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCAA...CTCAGCCCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGTTCACTTGGTACTCCTaGTCACTCCCCACCACGGCG +
Preference number: 5 (lower is better)
Translates to: NRGSNCPKAAASPSHLLRFTWYS*SLPTTA
Trigger: CGCCGTGGTGGGGAGTGACAAGGAGTACCAAGTGAA...CCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTGGAGGGAGGCCTCCATaGTCATTGAGCCTCTTGGCC +
Preference number: 5 (lower is better)
Translates to: RVVLAGTPFHWEERSSLAGGRPP*SLSLLA
Trigger: GGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCC...AGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGGCTGAGGGAGGGTTCTAGAAAGACACAGTGTATGGGGCAGTGGCAGCCGTTCAGCGAGGTGGGTTCCTaGAGGCTGTCTGTGGAAGCA +
Preference number: 5 (lower is better)
Translates to: WLREGSRKTQCMGQWQPFSEVGS*RLSVEA
Trigger: TGCTTCCACAGACAGCCTCAAGGAACCCACCTCGCT...GAACGGCTGCCACTGCCCCATACACTGTGTCTTTCTAGAACCCTCCCTCAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 90 bp AGAGGAGGTCCTGACCTGTGGCACATGAGCCATGAGTGGCAAACTTaGAGCAGACAGCCTCCCTTCTCTGTGGGTGACAGCCTCCTTGTG +
Preference number: 5 (lower is better)
Translates to: RGGPDLWHMSHEWQT*SRQPPFSVGDSLLV
Trigger: CACAAGGAGGCTGTCACCCACAGAGAAGGGAGGCTGTCTGCTTCAAGTTTGCCACTCATGGCTCATGTGCCACAGGTCAGGACCTCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 90 bp TCTGGGTTCCCATGGCCTTCAGAGGAGGTCCTGACCTGTGGCACATaGGCCATGAGTGGCAAACTTGAAGCAGACAGCCTCCCTTCTCTG +
Preference number: 5 (lower is better)
Translates to: SGFPWPSEEVLTCGT*AMSGKLEADSLPSL
Trigger: CAGAGAAGGGAGGCTGTCTGCTTCAAGTTTGCCACTCATGGCTCATGTGCCACAGGTCAGGACCTCCTCTGAAGGCCATGGGAACCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGGACTTGAAGAGGGTGTaGACCAGTGTTGACTTGCCC +
Preference number: 5 (lower is better)
Translates to: DAGEGEEKSGRGSNQPAWDLKRV*TSVDLP
Trigger: GGGCAAGTCAACACTGGTCAACACCCTCTTCAAGTC...CCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGTTCACTTGGTACTCCTaGTCACTCCCCACCACGGCG +
Preference number: 5 (lower is better)
Translates to: SRVVLAGTPFHWEERSSLFTWYS*SLPTTA
Trigger: CGCCGTGGTGGGGAGTGACAAGGAGTACCAAGTGAA...CAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTATCTGCAGTGAGCTTTaGGTGGGTGTGGTGCCCCAG +
Preference number: 5 (lower is better)
Translates to: RVVLAGTPFHWEERSSLAICSEL*VGVVPQ
Trigger: CTGGGGCACCACACCCACCAAAAGCTCACTGCAGAT...AGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGCCCAATAGATGTGCTTCTTGAACAGAACACCCAGAGCAGCCCAAGCTACCAACCCCTGGGCCTGCACTaGCCTCTTCCTGGAGAGGCT +
Preference number: 5 (lower is better)
Translates to: CPIDVLLEQNTQSSPSYQPLGLH*PLPGEA
Trigger: AGCCTCTCCAGGAAGAGGCAAGTGCAGGCCCAGGGG...TTGGTAGCTTGGGCTGCTCTGGGTGTTCTGTTCAAGAAGCACATCTATTGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGAGCGAGGTGGGTTCCTaGAGGCTGTCTGTGGAAGCA +
Preference number: 5 (lower is better)
Translates to: SRVVLAGTPFHWEERSSLSEVGS*RLSVEA
Trigger: TGCTTCCACAGACAGCCTCAAGGAACCCACCTCGCT...CAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS GCA 90 bp GTGGCTCTGGCCAAAGCTTTGACTGTGTCCAACCTGGTTATGCCCTaGTTGGCCTCATCCGATGTTGGCAAAGCCACGTTTGAGTTCCCC +
Preference number: 5 (lower is better)
Translates to: VALAKALTVSNLVMP*LASSDVGKATFEFP
Trigger: GGGGAACTCAAACGTGGCTTTGCCAACATCGGATGAGGCCAAGCAGGGCATAACCAGGTTGGACACAGTCAAAGCTTTGGCCAGAGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS GCA 90 bp GGTCTGGGCAGACCAGCACAACTGAATCCATGGCTGTACCTAGTCTaGTTGTCTCCAGTGCAGGAGAATCTGTCATTGTGTCCGGCCTGC +
Preference number: 5 (lower is better)
Translates to: GLGRPAQLNPWLYLV*LSPVQENLSLCPAC
Trigger: GCAGGCCGGACACAATGACAGATTCTCCTGCACTGGAGACAAGCAGACTAGGTACAGCCATGGATTCAGTTGTGCTGGTCTGCCCAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GATGGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGACTTGAAGAGGGTGTaGACCAGTGTTGACTTGCCC +
Preference number: 5 (lower is better)
Translates to: DGAGWCWQELHSIGRRGVDLKRV*TSVDLP
Trigger: GGGCAAGTCAACACTGGTCAACACCCTCTTCAAGTC...TACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GTGGCAGCCGTTCGTTCGCAAACATTCATGCATCTGATGGGGGCTTTGCCCTCCACATGCCCAATCGCTTaGATCTCCACTGTCTTGGGG +
Preference number: 5 (lower is better)
Translates to: VAAVRSQTFMHLMGALPSTCPIA*ISTVLG
Trigger: CCCCAAGACAGTGGAGATCAAAGCGATTGGGCATGT...GGAGGGCAAAGCCCCCATCAGATGCATGAATGTTTGCGAACGAACGGCTGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGCTGAGGTCATGGTATCAGCCTaGGCAATGACAGGAATGATG +
Preference number: 5 (lower is better)
Translates to: GSNCPKAAASPSHLLRAEVMVSA*AMTGMM
Trigger: CATCATTCCTGTCATTGCCAAGGCTGATACCATGAC...CTCAGCCCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GCATCCCCGAGGCTTGGGCCTCTTGTTCCTTCAGGACTTGTAGATGAATGGCCCTTGCGAACCCTCTGCTaGAATTCCGACTTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: ASPRLGPLVPSGLVDEWPLRTLC*NSDFSS
Trigger: GGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCAA...GGGCCATTCATCTACAAGTCCTGAAGGAACAAGAGGCCCAAGCCTCGGGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACGGAGGGAGGCCTCCATaGTCATTGAGCCTCTTGGCC +
Preference number: 5 (lower is better)
Translates to: WCWQELHSIGRRGVVWLNGGRPP*SLSLLA
Trigger: GGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCC...GTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GATGGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTATGGGTGACAGCCTCCTaGTGCAAACTGGGCAATTCT +
Preference number: 5 (lower is better)
Translates to: DGAGWCWQELHSIGRRGVWVTAS*CKLGNS
Trigger: AGAATTGCCCAGTTTGCACAAGGAGGCTGTCACCCA...TACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCGGCTCTGGAAGGGACTaGTCCCATGGGACCTGGCCC +
Preference number: 5 (lower is better)
Translates to: QKAARKRETVLVCLTSPAGSGRD*SHGTWP
Trigger: GGGCCAGGTCCCATGGGACAAGTCCCTTCCAGAGCC...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 90 bp CTTGTCCCATGGGACCTGGCCCCGGGAGGCTTGACGAACTCTGAATaGACTGAGCTTGGAAAGGTAAAGTCAGGCATGAAGACACCAGAG +
Preference number: 5 (lower is better)
Translates to: LVPWDLAPGGLTNSE*TELGKVKSGMKTPE
Trigger: CTCTGGTGTCTTCATGCCTGACTTTACCTTTCCAAGCTCAGTTCATTCAGAGTTCGTCAAGCCTCCCGGGGCCAGGTCCCATGGGACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 90 bp CAGAGGTTTATTCCCTGTGGGTGTTCTGCTGGCTTTGGTAAGTTCTaGGTTCCCATGGCCTTCAGAGGAGGTCCTGACCTGTGGCACATG +
Preference number: 5 (lower is better)
Translates to: QRFIPCGCSAGFGKF*VPMAFRGGPDLWHM
Trigger: CATGTGCCACAGGTCAGGACCTCCTCTGAAGGCCATGGGAACCCAGAACTTACCAAAGCCAGCAGAACACCCACAGGGAATAAACCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 90 bp AGTTTTGTGCTCACAACAGACACATTTGCAGCCGAGGTAGCCCTTTaGAGGTATGCTCGGGATCTGGGAATACCCCTGGGCCTGCACTTG +
Preference number: 5 (lower is better)
Translates to: SFVLTTDTFAAEVAL*RYARDLGIPLGLHL
Trigger: CAAGTGCAGGCCCAGGGGTATTCCCAGATCCCGAGCATACCTCCAAAGGGCTACCTCGGCTGCAAATGTGTCTGTTGTGAGCACAAAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGTCATGGTATCAGCCTaGGCAATGACAGGAATGATG +
Preference number: 5 (lower is better)
Translates to: GRWGGRREIRTRKQPTSLVMVSA*AMTGMM
Trigger: CATCATTCCTGTCATTGCCAAGGCTGATACCATGAC...CAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGGTCATGGTATCAGCCTaGGCAATGACAGGAATGATG +
Preference number: 5 (lower is better)
Translates to: DAGEGEEKSGRGSNQPAWVMVSA*AMTGMM
Trigger: CATCATTCCTGTCATTGCCAAGGCTGATACCATGAC...CCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTATTGCGAACCCTCTGCTaGAATTCCGACTTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: GWCWQELHSIGRRGVVWLLRTLC*NSDFSS
Trigger: GGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCAA...TAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp ATAGACACAAGGGTGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCTTCACTTGGTACTCCTaGTCACTCCCCACCACGGCG +
Preference number: 5 (lower is better)
Translates to: IDTRVELHFQTPILQEPLFTWYS*SLPTTA
Trigger: CGCCGTGGTGGGGAGTGACAAGGAGTACCAAGTGAA...GAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCACCCTTGTGTCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGGCAAACTCACAGTGGTaGAGGTTTTCCACTTCGATG +
Preference number: 5 (lower is better)
Translates to: DAGEGEEKSGRGSNQPAWANSQW*RFSTSM
Trigger: CATCGAAGTGGAAAACCTCAACCACTGTGAGTTTGC...CCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GATCCGCTGTTTGACAGTGACCCCAACATAGACACAAGGGTGGAGCTCCATTTTGGAGGGAGGCCTCCATaGTCATTGAGCCTCTTGGCC +
Preference number: 5 (lower is better)
Translates to: DPLFDSDPNIDTRVELHFGGRPP*SLSLLA
Trigger: GGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCC...AAAATGGAGCTCCACCCTTGTGTCTATGTTGGGGTCACTGTCAAACAGCGGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGCCCGTGGTCAAAAGCTaGACACTTTCCTGCTTGTCT +
Preference number: 5 (lower is better)
Translates to: NRGSNCPKAAASPSHLLRPVVKS*TLSCLS
Trigger: AGACAAGCAGGAAAGTGTCAAGCTTTTGACCACGGG...CCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 90 bp TCTCACTACTGGCTGGGTCTGGGCAGACCAGCACAACTGAATCCATaGCTGTACCTAGTCTGCTTGTCTCCAGTGCAGGAGAATCTGTCA +
Preference number: 5 (lower is better)
Translates to: SHYWLGLGRPAQLNP*LYLVCLSPVQENLS
Trigger: TGACAGATTCTCCTGCACTGGAGACAAGCAGACTAGGTACAGCCATGGATTCAGTTGTGCTGGTCTGCCCAGACCCAGCCAGTAGTGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GACGAGGAAGCAACCAACCAGCCTGGAAATACAGGGAAGGCGGGCACAGAAAGCGTCTTCATGGTCTTCTaGCGCATCTGCTCGATAATG +
Preference number: 5 (lower is better)
Translates to: DEEATNQPGNTGKAGTESVFMVF*RICSIM
Trigger: CATTATCGAGCAGATGCGCAAGAAGACCATGAAGAC...GCTTTCTGTGCCCGCCTTCCCTGTATTTCCAGGCTGGTTGGTTGCTTCCTCGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GATGGAGCAGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTCTTCATGGTCTTCTaGCGCATCTGCTCGATAATG +
Preference number: 5 (lower is better)
Translates to: DGAGWCWQELHSIGRRGVVFMVF*RICSIM
Trigger: CATTATCGAGCAGATGCGCAAGAAGACCATGAAGAC...TACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCTGCTCCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGCAGCAGTTTTCATTGTaGATCTGGTCTCCAAAGCCT +
Preference number: 5 (lower is better)
Translates to: GRWGGRREIRTRKQPTSLQQFSL*IWSPKP
Trigger: AGGCTTTGGAGACCAGATCAACAATGAAAACTGCTG...CAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGCAGCAGTTTTCATTGTaGATCTGGTCTCCAAAGCCT +
Preference number: 5 (lower is better)
Translates to: DAGEGEEKSGRGSNQPAWQQFSL*IWSPKP
Trigger: AGGCTTTGGAGACCAGATCAACAATGAAAACTGCTG...CCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CAGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTCTCCCGAGGACCCTCTaGCCGTTCACTTGGTACTCC +
Preference number: 5 (lower is better)
Translates to: QAIPKSEQISVVSCRNWLLPRTL*PFTWYS
Trigger: GGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGAG...AAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACCTACTGAGGGCAAACTCACAGTGGTaGAGGTTTTCCACTTCGATG +
Preference number: 5 (lower is better)
Translates to: NRGSNCPKAAASPSHLLRANSQW*RFSTSM
Trigger: CATCGAAGTGGAAAACCTCAACCACTGTGAGTTTGC...CCTCAGTAGGTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 90 bp TTTCCTCTGTGTCCACGCTCACCGGAGGGAGGCCTCCATTGTCATTaGGCCTCTTGGCCCTGTAAGTCTCATAGTGGATGTTGTGTGTTA +
Preference number: 5 (lower is better)
Translates to: FPLCPRSPEGGLHCH*ASWPCKSHSGCCVL
Trigger: TAACACACAACATCCACTATGAGACTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCCGGTGAGCGTGGACACAGAGGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS TCA 90 bp CTGTGGGTGACAGCCTCCTTGTGCAAACTGGGCAATTCTTCCCAATaGGAAAGTGAGGCATCTAAGGGCCGCGTTTGGACATTCTGGTGT +
Preference number: 5 (lower is better)
Translates to: LWVTASLCKLGNSSQ*ESEASKGRVWTFWC
Trigger: ACACCAGAATGTCCAAACGCGGCCCTTAGATGCCTCACTTTCTCATTGGGAAGAATTGCCCAGTTTGCACAAGGAGGCTGTCACCCACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GATCCGCTGTTTGACAGTGACCCCAACATAGACACAAGGGTGGAGCTCCATTTTCCTAGCAGGTTGGAGTaGATGCTGACCGGCTTCATG +
Preference number: 5 (lower is better)
Translates to: DPLFDSDPNIDTRVELHFPSRLE*MLTGFM
Trigger: CATGAAGCCGGTCAGCATCAACTCCAACCTGCTAGG...AAAATGGAGCTCCACCCTTGTGTCTATGTTGGGGTCACTGTCAAACAGCGGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACGTCTTCATGGTCTTCTaGCGCATCTGCTCGATAATG +
Preference number: 5 (lower is better)
Translates to: VWLNRGSNCPKAAASPSHVFMVF*RICSIM
Trigger: CATTATCGAGCAGATGCGCAAGAAGACCATGAAGAC...GTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTCCAACGACCATGATGTaGAAGTCAAAGCCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: RVVLAGTPFHWEERSSLAPTTMM*KSKPVF
Trigger: GAAGACTGGCTTTGACTTCAACATCATGGTCGTTGG...AGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATAGACTTGAAGAGGGTGTaGACCAGTGTTGACTTGCCC +
Preference number: 5 (lower is better)
Translates to: WGGRREIRTRKQPTSLEIDLKRV*TSVDLP
Trigger: GGGCAAGTCAACACTGGTCAACACCCTCTTCAAGTC...TATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTGCCTTTCACTTGGTACTCCTaGTCACTCCCCACCACGGCG +
Preference number: 5 (lower is better)
Translates to: RILAAPVCGWVRSKKELPFTWYS*SLPTTA
Trigger: CGCCGTGGTGGGGAGTGACAAGGAGTACCAAGTGAA...AGGCAACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp ATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCTTCACTTGGTACTCCTaGTCACTCCCCACCACGGCG +
Preference number: 5 (lower is better)
Translates to: IGRRGVVWLNRGSNCPKAFTWYS*SLPTTA
Trigger: CGCCGTGGTGGGGAGTGACAAGGAGTACCAAGTGAA...GGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTGCAAACTCACAGTGGTaGAGGTTTTCCACTTCGATG +
Preference number: 5 (lower is better)
Translates to: RVVLAGTPFHWEERSSLAANSQW*RFSTSM
Trigger: CATCGAAGTGGAAAACCTCAACCACTGTGAGTTTGC...AGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CATGAAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTGGAGGGAGGCCTCCATaGTCATTGAGCCTCTTGGCC +
Preference number: 5 (lower is better)
Translates to: HEEYLQPQFVGGSEVRKSGGRPP*SLSLLA
Trigger: GGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCC...ACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAAACGCCCAGTCTTCTaGATGACAGGGATGAGGGGG +
Preference number: 5 (lower is better)
Translates to: WQELHSIGRRGVVWLNRGKRPVF*MTGMRG
Trigger: CCCCCTCATCCCTGTCATCAAGAAGACTGGGCGTTT...TCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TTTCCTCCACCTAAAGTTTGCCTCATTTGCCCAATAGATGTGCTTCTTGAACAGGGCTCTGGAAGGGACTaGTCCCATGGGACCTGGCCC +
Preference number: 5 (lower is better)
Translates to: FPPPKVCLICPIDVLLEQGSGRD*SHGTWP
Trigger: GGGCCAGGTCCCATGGGACAAGTCCCTTCCAGAGCC...CTGTTCAAGAAGCACATCTATTGGGCAAATGAGGCAAACTTTAGGTGGAGGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGACGCTGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGTCACTTTTCCTGACTaGGATACTACAGGTAAGTTG +
Preference number: 5 (lower is better)
Translates to: GRWGGRREIRTRKQPTSLVTFPD*DTTGKL
Trigger: CAACTTACCTGTAGTATCCAAGTCAGGAAAAGTGAC...CAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCAGCGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 90 bp GTGAGGCGCACAGCTTTTTGTTCGGAGGGAGGCCTCCATTGTCATTaGGCCTCTTGGCCCTGTAAGTCTCATAGTGGATGTTGTGTGTTA +
Preference number: 5 (lower is better)
Translates to: VRRTAFCSEGGLHCH*ASWPCKSHSGCCVL
Trigger: TAACACACAACATCCACTATGAGACTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCCGAACAAAAAGCTGTGCGCCTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000230365.2
ENSMUST00000238416.3
CDS-3UTR CAA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCCCTAGCAGGTTGGAGTaGATGCTGACCGGCTTCATG +
Preference number: 5 (lower is better)
Translates to: QKAARKRETVLVCLTSPAPSRLE*MLTGFM
Trigger: CATGAAGCCGGTCAGCATCAACTCCAACCTGCTAGG...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCAGCTTTCTTCTCTGACTTGAAGAGGGTGTaGACCAGTGTTGACTTGCCC +
Preference number: 5 (lower is better)
Translates to: WSSIFRHQFCRSPSAFFSDLKRV*TSVDLP
Trigger: GGGCAAGTCAACACTGGTCAACACCCTCTTCAAGTC...AGAGAAGAAAGCTGAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCAGCTTTCTTCTCTACATGCCCAATCGCTTaGATCTCCACTGTCTTGGGG +
Preference number: 5 (lower is better)
Translates to: WSSIFRHQFCRSPSAFFSTCPIA*ISTVLG
Trigger: CCCCAAGACAGTGGAGATCAAAGCGATTGGGCATGT...AGAGAAGAAAGCTGAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTTATCTGCAGTGAGCTTTaGGTGGGTGTGGTGCCCCAG +
Preference number: 5 (lower is better)
Translates to: RLFPSQSKFQWSAAETGFICSEL*VGVVPQ
Trigger: CTGGGGCACCACACCCACCAAAAGCTCACTGCAGAT...AAAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AAGGTAGCCAAGAAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCGGTCCTAGCAGGTTGGAGTaGATGCTGACCGGCTTCATG +
Preference number: 5 (lower is better)
Translates to: KVAKKVLMQNEWLESNAGPSRLE*MLTGFM
Trigger: CATGAAGCCGGTCAGCATCAACTCCAACCTGCTAGG...ACCGGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTTCTTGGCTACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CCCCAGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCCAACGACCATGATGTaGAAGTCAAAGCCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: PQAIPKSEQISVVSCRNWPTTMM*KSKPVF
Trigger: GAAGACTGGCTTTGACTTCAACATCATGGTCGTTGG...CCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp ATAGACACAAGGGTGGAGCTCCATTTTCAGACACCAATTCTGCAGGAGCCCCTCCCAACGACCATGATGTaGAAGTCAAAGCCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: IDTRVELHFQTPILQEPLPTTMM*KSKPVF
Trigger: GAAGACTGGCTTTGACTTCAACATCATGGTCGTTGG...GAGGGGCTCCTGCAGAATTGGTGTCTGAAAATGGAGCTCCACCCTTGTGTCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCGACTTGAAGAGGGTGTaGACCAGTGTTGACTTGCCC +
Preference number: 5 (lower is better)
Translates to: QKAARKRETVLVCLTSPADLKRV*TSVDLP
Trigger: GGGCAAGTCAACACTGGTCAACACCCTCTTCAAGTC...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GTAAACAGGTTGTCTACACACATACTCACTGGGCCAGCCACCAGTGGTGATTTTACATGCCCAATCGCTTaGATCTCCACTGTCTTGGGG +
Preference number: 5 (lower is better)
Translates to: VNRLSTHILTGPATSGDFTCPIA*ISTVLG
Trigger: CCCCAAGACAGTGGAGATCAAAGCGATTGGGCATGT...AAAATCACCACTGGTGGCTGGCCCAGTGAGTATGTGTGTAGACAACCTGTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGGCTGAGGGAGGGTTCTAGAAAGACACAGTGTATGGGGCAGTGGCAGCCGTTCTTTTCGTACTGTTCGTaGATGTATTTCTCAATGGGC +
Preference number: 5 (lower is better)
Translates to: WLREGSRKTQCMGQWQPFFSYCS*MYFSMG
Trigger: GCCCATTGAGAAATACATCAACGAACAGTACGAAAA...GAACGGCTGCCACTGCCCCATACACTGTGTCTTTCTAGAACCCTCCCTCAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGGCTGAGGGAGGGTTCTAGAAAGACACAGTGTATGGGGCAGTGGCAGCCGTTCATGATGTTCACCACTTaGCTGAGATGTTTCATGAAC +
Preference number: 5 (lower is better)
Translates to: WLREGSRKTQCMGQWQPFMMFTT*LRCFMN
Trigger: GTTCATGAAACATCTCAGCAAAGTGGTGAACATCAT...GAACGGCTGCCACTGCCCCATACACTGTGTCTTTCTAGAACCCTCCCTCAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCAGTCATGGTATCAGCCTaGGCAATGACAGGAATGATG +
Preference number: 5 (lower is better)
Translates to: GRRGVVWLNRGSNCPKAAVMVSA*AMTGMM
Trigger: CATCATTCCTGTCATTGCCAAGGCTGATACCATGAC...TGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TTTCCTCCACCTAAAGTTTGCCTCATTTGCCCAATAGATGTGCTTCTTGAACAGCTCCCGAGGACCCTCTaGCCGTTCACTTGGTACTCC +
Preference number: 5 (lower is better)
Translates to: FPPPKVCLICPIDVLLEQLPRTL*PFTWYS
Trigger: GGAGTACCAAGTGAACGGCAAGAGGGTCCTCGGGAG...CTGTTCAAGAAGCACATCTATTGGGCAAATGAGGCAAACTTTAGGTGGAGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGGCAAACTCACAGTGGTaGAGGTTTTCCACTTCGATG +
Preference number: 5 (lower is better)
Translates to: VLAGTPFHWEERSSLAKQANSQW*RFSTSM
Trigger: CATCGAAGTGGAAAACCTCAACCACTGTGAGTTTGC...CTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTTACATGCCCAATCGCTTaGATCTCCACTGTCTTGGGG +
Preference number: 5 (lower is better)
Translates to: RLFPSQSKFQWSAAETGFTCPIA*ISTVLG
Trigger: CCCCAAGACAGTGGAGATCAAAGCGATTGGGCATGT...AAAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCAGCTAGCCCCTCCCACATGATGTTCACCACTTaGCTGAGATGTTTCATGAAC +
Preference number: 5 (lower is better)
Translates to: VWLNRGSNCPKAAASPSHMMFTT*LRCFMN
Trigger: GTTCATGAAACATCTCAGCAAAGTGGTGAACATCAT...GTGGGAGGGGCTAGCTGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGCCCAATAGATGTGCTTCTTGAACAGAACACCCAGAGCAGCCCAAGCTACCAAGCAAACTCACAGTGGTaGAGGTTTTCCACTTCGATG +
Preference number: 5 (lower is better)
Translates to: CPIDVLLEQNTQSSPSYQANSQW*RFSTSM
Trigger: CATCGAAGTGGAAAACCTCAACCACTGTGAGTTTGC...TTGGTAGCTTGGGCTGCTCTGGGTGTTCTGTTCAAGAAGCACATCTATTGGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTTTGGGTGACAGCCTCCTaGTGCAAACTGGGCAATTCT +
Preference number: 5 (lower is better)
Translates to: RLFPSQSKFQWSAAETGFWVTAS*CKLGNS
Trigger: AGAATTGCCCAGTTTGCACAAGGAGGCTGTCACCCA...AAAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGGTGGTGCTGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTATGGCTTTATCTAGTTTaGTGCTCACAACAGACACAT +
Preference number: 5 (lower is better)
Translates to: GWCWQELHSIGRRGVVWLWLYLV*CSQQTH
Trigger: ATGTGTCTGTTGTGAGCACAAAACTAGATAAAGCCA...TAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCAGCACCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACCCGTGGTCAAAAGCTaGACACTTTCCTGCTTGTCT +
Preference number: 5 (lower is better)
Translates to: GTPFHWEERSSLAKQRKQPVVKS*TLSCLS
Trigger: AGACAAGCAGGAAAGTGTCAAGCTTTTGACCACGGG...TTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCGGTTCCCTTGGAGACCTGTACCTAGTCTGCTaGTCTCCAGTGCAGGAGAAT +
Preference number: 5 (lower is better)
Translates to: KVLMQNEWLESNAGSLGDLYLVC*SPVQEN
Trigger: ATTCTCCTGCACTGGAGACAAGCAGACTAGGTACAG...GTCTCCAAGGGAACCGGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAAGGAGGCAACCTAGCAGGTTGGAGTaGATGCTGACCGGCTTCATG +
Preference number: 5 (lower is better)
Translates to: ETGRKWGECMNIYEERRQPSRLE*MLTGFM
Trigger: CATGAAGCCGGTCAGCATCAACTCCAACCTGCTAGG...TTGCCTCCTTTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AAGAGGGTGTCAGGTCCTCTGGAACTGGAGTCACAGATAACTGTAAGCTACCAAGTCTTCATGGTCTTCTaGCGCATCTGCTCGATAATG +
Preference number: 5 (lower is better)
Translates to: KRVSGPLELESQITVSYQVFMVF*RICSIM
Trigger: CATTATCGAGCAGATGCGCAAGAAGACCATGAAGAC...TTGGTAGCTTACAGTTATCTGTGACTCCAGTTCCAGAGGACCTGACACCCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TCCCAGCATTATAAATTAAAACCTTCCCCAGACCTCTTGAGTGAGGCGCACAGCCCAACGACCATGATGTaGAAGTCAAAGCCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: SQHYKLKPSPDLLSEAHSPTTMM*KSKPVF
Trigger: GAAGACTGGCTTTGACTTCAACATCATGGTCGTTGG...GCTGTGCGCCTCACTCAAGAGGTCTGGGGAAGGTTTTAATTTATAATGCTGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGGCAGGAACTCCATTCCATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGACAGCAGTTTTCATTGTaGATCTGGTCTCCAAAGCCT +
Preference number: 5 (lower is better)
Translates to: WQELHSIGRRGVVWLNRGQQFSL*IWSPKP
Trigger: AGGCTTTGGAGACCAGATCAACAATGAAAACTGCTG...TCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAATGGAATGGAGTTCCTGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp ATTGGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGTCATGGTATCAGCCTaGGCAATGACAGGAATGATG +
Preference number: 5 (lower is better)
Translates to: IGRRGVVWLNRGSNCPKAVMVSA*AMTGMM
Trigger: CATCATTCCTGTCATTGCCAAGGCTGATACCATGAC...GGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCCAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GTTAAGGTAGCCAAGAAAGTACTCATGCAGAATGAATGGCTAGAGAGCAATGCCTTGCGAACCCTCTGCTaGAATTCCGACTTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: VKVAKKVLMQNEWLESNALRTLC*NSDFSS
Trigger: GGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCAA...GGCATTGCTCTCTAGCCATTCATTCTGCATGAGTACTTTCTTGGCTACCTTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AAGAGGGTGTCAGGTCCTCTGGAACTGGAGTCACAGATAACTGTAAGCTACCAACAGCAGTTTTCATTGTaGATCTGGTCTCCAAAGCCT +
Preference number: 5 (lower is better)
Translates to: KRVSGPLELESQITVSYQQQFSL*IWSPKP
Trigger: AGGCTTTGGAGACCAGATCAACAATGAAAACTGCTG...TTGGTAGCTTACAGTTATCTGTGACTCCAGTTCCAGAGGACCTGACACCCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TGGGGAGGGAGAAGAGAAATCAGGACGAGGAAGCAACCAACCAGCCTGGAAATAATGATGTTCACCACTTaGCTGAGATGTTTCATGAAC +
Preference number: 5 (lower is better)
Translates to: WGGRREIRTRKQPTSLEIMMFTT*LRCFMN
Trigger: GTTCATGAAACATCTCAGCAAAGTGGTGAACATCAT...TATTTCCAGGCTGGTTGGTTGCTTCCTCGTCCTGATTTCTCTTCTCCCTCCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GGGAGGAGAGGAGTAGTTTGGCTAAACAGAGGAAGCAACTGTCCTAAAGCCGCAATGATGTTCACCACTTaGCTGAGATGTTTCATGAAC +
Preference number: 5 (lower is better)
Translates to: GRRGVVWLNRGSNCPKAAMMFTT*LRCFMN
Trigger: GTTCATGAAACATCTCAGCAAAGTGGTGAACATCAT...TGCGGCTTTAGGACAGTTGCTTCCTCTGTTTAGCCAAACTACTCCTCTCCTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCAGCTGCAGAAACTGGCTTTGTCATGGTATCAGCCTaGGCAATGACAGGAATGATG +
Preference number: 5 (lower is better)
Translates to: RLFPSQSKFQWSAAETGFVMVSA*AMTGMM
Trigger: CATCATTCCTGTCATTGCCAAGGCTGATACCATGAC...AAAGCCAGTTTCTGCAGCTGACCACTGAAATTTGCTCTGACTTGGGAATAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAAGGAGGCAATTGCGAACCCTCTGCTaGAATTCCGACTTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: ETGRKWGECMNIYEERRQLRTLC*NSDFSS
Trigger: GGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCAA...TTGCCTCCTTTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CATGAAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTGCAAACTCACAGTGGTaGAGGTTTTCCACTTCGATG +
Preference number: 5 (lower is better)
Translates to: HEEYLQPQFVGGSEVRKSANSQW*RFSTSM
Trigger: CATCGAAGTGGAAAACCTCAACCACTGTGAGTTTGC...ACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAAGGAGGCAAGCTTCTGCTCGGCTTTaGAGGAGAGGTAGCATAGGT +
Preference number: 5 (lower is better)
Translates to: ETGRKWGECMNIYEERRQASARL*RRGSIG
Trigger: ACCTATGCTACCTCTCCTCAAAAGCCGAGCAGAAGC...TTGCCTCCTTTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 90 bp CTGGACTGGTTTAGTGTAGGCATATTGATAGCCAATTCCGGTCTGTaGAGAGCCACTGTGCCTATATGTCTGGCTTTATCTAGTTTTGTG +
Preference number: 5 (lower is better)
Translates to: LDWFSVGILIANSGL*RATVPICLALSSFV
Trigger: CACAAAACTAGATAAAGCCAGACATATAGGCACAGTGGCTCTCCACAGACCGGAATTGGCTATCAATATGCCTACACTAAACCAGTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AAAAGGTCAGAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAACCTAGCAGGTTGGAGTaGATGCTGACCGGCTTCATG +
Preference number: 5 (lower is better)
Translates to: KRSETGRKWGECMNIYEEPSRLE*MLTGFM
Trigger: CATGAAGCCGGTCAGCATCAACTCCAACCTGCTAGG...TTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTCTGACCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATACCTTTAACATGCCCAATCGCTTaGATCTCCACTGTCTTGGGG +
Preference number: 5 (lower is better)
Translates to: LASGSPPCIMNHPYKIPLTCPIA*ISTVLG
Trigger: CCCCAAGACAGTGGAGATCAAAGCGATTGGGCATGT...TAAAGGTATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GTTCCTTCAGGACTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGATGATGTTCACCACTTaGCTGAGATGTTTCATGAAC +
Preference number: 5 (lower is better)
Translates to: VPSGLVDEWPTSHQPLSKMMFTT*LRCFMN
Trigger: GTTCATGAAACATCTCAGCAAAGTGGTGAACATCAT...CTTGCTCAAAGGCTGGTGACTTGTGGGCCATTCATCTACAAGTCCTGAAGGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AAAAGGTCAGAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAAAACGCCCAGTCTTCTaGATGACAGGGATGAGGGGG +
Preference number: 5 (lower is better)
Translates to: KRSETGRKWGECMNIYEEKRPVF*MTGMRG
Trigger: CCCCCTCATCCCTGTCATCAAGAAGACTGGGCGTTT...TTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTCTGACCTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp TTTCCTCCACCTAAAGTTTGCCTCATTTGCCCAATAGATGTGCTTCTTGAACAGCTGTACCTAGTCTGCTaGTCTCCAGTGCAGGAGAAT +
Preference number: 5 (lower is better)
Translates to: FPPPKVCLICPIDVLLEQLYLVC*SPVQEN
Trigger: ATTCTCCTGCACTGGAGACAAGCAGACTAGGTACAG...CTGTTCAAGAAGCACATCTATTGGGCAAATGAGGCAAACTTTAGGTGGAGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTGCCTTTTTCGTACTGTTCGTaGATGTATTTCTCAATGGGC +
Preference number: 5 (lower is better)
Translates to: RILAAPVCGWVRSKKELPFSYCS*MYFSMG
Trigger: GCCCATTGAGAAATACATCAACGAACAGTACGAAAA...AGGCAACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CTGAGTACACGCATACATACACACACATGCATACACACACACAGGCACTCTCCAATGATGTTCACCACTTaGCTGAGATGTTTCATGAAC +
Preference number: 5 (lower is better)
Translates to: LSTRIHTHTCIHTHRHSPMMFTT*LRCFMN
Trigger: GTTCATGAAACATCTCAGCAAAGTGGTGAACATCAT...TGGAGAGTGCCTGTGTGTGTGTATGCATGTGTGTGTATGTATGCGTGTACTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CAGAAGGCTGCTAGAAAACGGGAAACTGTGTTAGTTTGTCTCACAAGTCCAGCCTGGCTTTATCTAGTTTaGTGCTCACAACAGACACAT +
Preference number: 5 (lower is better)
Translates to: QKAARKRETVLVCLTSPAWLYLV*CSQQTH
Trigger: ATGTGTCTGTTGTGAGCACAAAACTAGATAAAGCCA...GGCTGGACTTGTGAGACAAACTAACACAGTTTCCCGTTTTCTAGCAGCCTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATACCTTTAGTCTTCATGGTCTTCTaGCGCATCTGCTCGATAATG +
Preference number: 5 (lower is better)
Translates to: LASGSPPCIMNHPYKIPLVFMVF*RICSIM
Trigger: CATTATCGAGCAGATGCGCAAGAAGACCATGAAGAC...TAAAGGTATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GTGACACTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATACAGCAGTTTTCATTGTaGATCTGGTCTCCAAAGCCT +
Preference number: 5 (lower is better)
Translates to: VTLASGSPPCIMNHPYKIQQFSL*IWSPKP
Trigger: AGGCTTTGGAGACCAGATCAACAATGAAAACTGCTG...TATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAGTGTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CATGAAGAATACTTGCAGCCCCAGTTTGTGGGTGGGTCAGAAGTAAGAAAGAGTTTTTCGTACTGTTCGTaGATGTATTTCTCAATGGGC +
Preference number: 5 (lower is better)
Translates to: HEEYLQPQFVGGSEVRKSFSYCS*MYFSMG
Trigger: GCCCATTGAGAAATACATCAACGAACAGTACGAAAA...ACTCTTTCTTACTTCTGACCCACCCACAAACTGGGGCTGCAAGTATTCTTCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CTAAACAGAATTTTGTGGTATCTTCCCTTTCCTATGGCTAAATGGCTTTCCTTATTGCGAACCCTCTGCTaGAATTCCGACTTCTCCTCC +
Preference number: 5 (lower is better)
Translates to: LNRILWYLPFPMAKWLSLLRTLC*NSDFSS
Trigger: GGAGGAGAAGTCGGAATTCAAGCAGAGGGTTCGCAA...TAAGGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAAAATTCTGTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp CTAAACAGAATTTTGTGGTATCTTCCCTTTCCTATGGCTAAATGGCTTTCCTTAGCTTCTGCTCGGCTTTaGAGGAGAGGTAGCATAGGT +
Preference number: 5 (lower is better)
Translates to: LNRILWYLPFPMAKWLSLASARL*RRGSIG
Trigger: ACCTATGCTACCTCTCCTCAAAAGCCGAGCAGAAGC...TAAGGAAAGCCATTTAGCCATAGGAAAGGGAAGATACCACAAAATTCTGTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp AAATTCTCCCATTTCCCCAGGCTATTCCCAAGTCAGAGCAAATTTCAGTGGTCATTTTCGTACTGTTCGTaGATGTATTTCTCAATGGGC +
Preference number: 5 (lower is better)
Translates to: KFSHFPRLFPSQSKFQWSFSYCS*MYFSMG
Trigger: GCCCATTGAGAAATACATCAACGAACAGTACGAAAA...TGACCACTGAAATTTGCTCTGACTTGGGAATAGCCTGGGGAAATGGGAGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GAGACAGGCAGGAAATGGGGTGAATGCATGAATATATATGAAGAAAGGAGGCAAGTCACTTTTCCTGACTaGGATACTACAGGTAAGTTG +
Preference number: 5 (lower is better)
Translates to: ETGRKWGECMNIYEERRQVTFPD*DTTGKL
Trigger: CAACTTACCTGTAGTATCCAAGTCAGGAAAAGTGAC...TTGCCTCCTTTCTTCATATATATTCATGCATTCACCCCATTTCCTGCCTGTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS-3UTR CAA 90 bp GTGACACTAGCCTCTGGCTCCCCACCATGTATAATGAATCACCCTTATAAAATATTTTCGTACTGTTCGTaGATGTATTTCTCAATGGGC +
Preference number: 5 (lower is better)
Translates to: VTLASGSPPCIMNHPYKIFSYCS*MYFSMG
Trigger: GCCCATTGAGAAATACATCAACGAACAGTACGAAAA...TATTTTATAAGGGTGATTCATTATACATGGTGGGGAGCCAGAGGCTAGTGTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000023095.14
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp CCCTGGGCCTGCACTTGCCTCTTCCTGGAGAGGCTCTaGAAGGGACTTGTCCCATGGGACCTGGCCCCGGGA +
Preference number: 6 (lower is better)
Translates to: PWACTCLFLERL*KGLVPWDLAPG
Trigger: TCCCGGGGCCAGGTCCCATGGGACAAGTCCCTTCCAGAGCCTCTCCAGGAAGAGGCAAGTGCAGGCCCAGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 90 bp GGGAGCCCTTTGGGTTCTGGGGCCAGGTCCAGCGAGGTGGGTTCCTaGAGGCTGTCTGTGGAAGCACCCACAGCTCCATGGTCCTGGGCT +
Preference number: 6 (lower is better)
Translates to: GSPLGSGARSSEVGS*RLSVEAPTAPWSWA
Trigger: AGCCCAGGACCATGGAGCTGTGGGTGCTTCCACAGACAGCCTCAAGGAACCCACCTCGCTGGACCTGGCCCCAGAACCCAAAGGGCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp TACCAGCTCAGACATGGCTGCGTCCGTCCTAGCCTCTaGGAGCCCTTTGGGTTCTGGGGCCAGGTCCAGCGA +
Preference number: 6 (lower is better)
Translates to: YQLRHGCVRPSL*EPFGFWGQVQR
Trigger: TCGCTGGACCTGGCCCCAGAACCCAAAGGGCTCCCAGAGGCTAGGACGGACGCAGCCATGTCTGAGCTGGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS GCA 72 bp GAGAAAGATGTTCTGGGGCCTGGAGCCCTGTGTGGCTaGATCTCCGGAGGAGCAGGTGCGAAGGCGTGGTTC +
Preference number: 6 (lower is better)
Translates to: EKDVLGPGALCG*ISGGAGAKAWF
Trigger: GAACCACGCCTTCGCACCTGCTCCTCCGGAGATGCAGCCACACAGGGCTCCAGGCCCCAGAACATCTTTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp TTGGGTTCTGGGGCCAGGTCCAGCGAGGTGGGTTCCTaGAGGCTGTCTGTGGAAGCACCCACAGCTCCATGG +
Preference number: 6 (lower is better)
Translates to: LGSGARSSEVGS*RLSVEAPTAPW
Trigger: CCATGGAGCTGTGGGTGCTTCCACAGACAGCCTCAAGGAACCCACCTCGCTGGACCTGGCCCCAGAACCCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS GCA 72 bp GGAGGTATGCTCGGGATCTGGGAATACCCCTGGGCCTaGACTTGCCTCTTCCTGGAGAGGCTCTGGAAGGGA +
Preference number: 6 (lower is better)
Translates to: GGMLGIWEYPWA*TCLFLERLWKG
Trigger: TCCCTTCCAGAGCCTCTCCAGGAAGAGGCAAGTGCAGGCCCAGGGGTATTCCCAGATCCCGAGCATACCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp CAGCATGTGGCTGTGAGAGAAAGATGTTCTGGGGCCTaGAGCCCTGTGTGGCTGCATCTCCGGAGGAGCAGG +
Preference number: 6 (lower is better)
Translates to: QHVAVRERCSGA*SPVWLHLRRSR
Trigger: CCTGCTCCTCCGGAGATGCAGCCACACAGGGCTCCAGGCCCCAGAACATCTTTCTCTCACAGCCACATGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp CCCTTTGGAGGTATGCTCGGGATCTGGGAATACCCCTaGGCCTGCACTTGCCTCTTCCTGGAGAGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: PFGGMLGIWEYP*ACTCLFLERLW
Trigger: CCAGAGCCTCTCCAGGAAGAGGCAAGTGCAGGCCCAGGGGTATTCCCAGATCCCGAGCATACCTCCAAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 72 bp TGTCCGGCCTGCCTACGGTGGCTCTGGCCAAAGCTTTaGCTGTGTCCAACCTGGTTATGCCCTGCTTGGCCT +
Preference number: 6 (lower is better)
Translates to: CPACLRWLWPKL*LCPTWLCPAWP
Trigger: AGGCCAAGCAGGGCATAACCAGGTTGGACACAGTCAAAGCTTTGGCCAGAGCCACCGTAGGCAGGCCGGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 90 bp CCACCTTCCTCTATCACATGCCCAATCGCTTTGATCTCCACTGTCTaGGGGATCTTCTCCTCCCGGTTCCAGCTGGAGGCCTTTCGGCTC +
Preference number: 6 (lower is better)
Translates to: PPSSITCPIALISTV*GIFSSRFQLEAFRL
Trigger: GAGCCGAAAGGCCTCCAGCTGGAACCGGGAGGAGAAGATCCCCAAGACAGTGGAGATCAAAGCGATTGGGCATGTGATAGAGGAAGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 72 bp GGAGGCCTTCTCCCGGAGGGAGGCCTCCATTGTCATTaGGCCTCTTGGCCCTGTAAGTCTCATAGTGGATGT +
Preference number: 6 (lower is better)
Translates to: GGLLPEGGLHCH*ASWPCKSHSGC
Trigger: ACATCCACTATGAGACTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCCGGGAGAAGGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230507.2
CDS TCA 72 bp CCTGACCTGTGGCACATGAGCCATGAGTGGCAAACTTaGAGCAGACAGCCTCCCTTCTCTGTGGGTGACAGC +
Preference number: 6 (lower is better)
Translates to: PDLWHMSHEWQT*SRQPPFSVGDS
Trigger: GCTGTCACCCACAGAGAAGGGAGGCTGTCTGCTTCAAGTTTGCCACTCATGGCTCATGTGCCACAGGTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS GCA 72 bp AGACACATTTGCAGCCGAGGTAGCCCTTTGGAGGTATaGTCGGGATCTGGGAATACCCCTGGGCCTGCACTT +
Preference number: 6 (lower is better)
Translates to: RHICSRGSPLEV*SGSGNTPGPAL
Trigger: AAGTGCAGGCCCAGGGGTATTCCCAGATCCCGAGCATACCTCCAAAGGGCTACCTCGGCTGCAAATGTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp TGGCTGGGTCTGGGCAGACCAGCACAACTGAATCCATaGCTGTACCTAGTCTGCTTGTCTCCAGTGCAGGAG +
Preference number: 6 (lower is better)
Translates to: WLGLGRPAQLNP*LYLVCLSPVQE
Trigger: CTCCTGCACTGGAGACAAGCAGACTAGGTACAGCCATGGATTCAGTTGTGCTGGTCTGCCCAGACCCAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp CCTTCCCCAGACCTCTTGAGTGAGGCGCACAGCTTTTaGTTCGGAGGGAGGCCTCCATTGTCATTGAGCCTC +
Preference number: 6 (lower is better)
Translates to: PSPDLLSEAHSF*FGGRPPLSLSL
Trigger: GAGGCTCAATGACAATGGAGGCCTCCCTCCGAACAAAAAGCTGTGCGCCTCACTCAAGAGGTCTGGGGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000230365.2
ENSMUST00000238416.3
CDS CAA 72 bp CTAGTCTGCTTGTCTCCAGTGCAGGAGAATCTGTCATaGTGTCCGGCCTGCCTACGGTGGCTCTGGCCAAAG +
Preference number: 6 (lower is better)
Translates to: LVCLSPVQENLS*CPACLRWLWPK
Trigger: CTTTGGCCAGAGCCACCGTAGGCAGGCCGGACACAATGACAGATTCTCCTGCACTGGAGACAAGCAGACTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 90 bp GCTCTGGCCAAAGCTTTGACTGTGTCCAACCTGGTTATGCCCTGCTaGGCCTCATCCGATGTTGGCAAAGCCACGTTTGAGTTCCCCGTG +
Preference number: 6 (lower is better)
Translates to: ALAKALTVSNLVMPC*ASSDVGKATFEFPV
Trigger: CACGGGGAACTCAAACGTGGCTTTGCCAACATCGGATGAGGCCAAGCAGGGCATAACCAGGTTGGACACAGTCAAAGCTTTGGCCAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 72 bp TGTCCACGCTCACCGGAGGGAGGCCTCCATTGTCATTaGGCCTCTTGGCCCTGTAAGTCTCATAGTGGATGT +
Preference number: 6 (lower is better)
Translates to: CPRSPEGGLHCH*ASWPCKSHSGC
Trigger: ACATCCACTATGAGACTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCCGGTGAGCGTGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000239048.2
CDS GCA 72 bp GGTACTCCTTGTCACTCCCCACCACGGCGAAGGGCATaGTCTCCTGCCGGATTTTGTCATTCTCTGTCTTGT +
Preference number: 6 (lower is better)
Translates to: GTPCHSPPRRRA*SPAGFCHSLSC
Trigger: ACAAGACAGAGAATGACAAAATCCGGCAGGAGAGCATGCCCTTCGCCGTGGTGGGGAGTGACAAGGAGTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000230365.2
ENSMUST00000230507.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp ATTCCCTGTGGGTGTTCTGCTGGCTTTGGTAAGTTCTaGGTTCCCATGGCCTTCAGAGGAGGTCCTGACCTG +
Preference number: 6 (lower is better)
Translates to: IPCGCSAGFGKF*VPMAFRGGPDL
Trigger: CAGGTCAGGACCTCCTCTGAAGGCCATGGGAACCCAGAACTTACCAAAGCCAGCAGAACACCCACAGGGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp TCTATCACATGCCCAATCGCTTTGATCTCCACTGTCTaGGGGATCTTCTCCTCCCGGTTCCAGCTGGAGGCC +
Preference number: 6 (lower is better)
Translates to: SITCPIALISTV*GIFSSRFQLEA
Trigger: GGCCTCCAGCTGGAACCGGGAGGAGAAGATCCCCAAGACAGTGGAGATCAAAGCGATTGGGCATGTGATAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 90 bp CTGGGCAGACCAGCACAACTGAATCCATGGCTGTACCTAGTCTGCTaGTCTCCAGTGCAGGAGAATCTGTCATTGTGTCCGGCCTGCCTA +
Preference number: 6 (lower is better)
Translates to: LGRPAQLNPWLYLVC*SPVQENLSLCPACL
Trigger: TAGGCAGGCCGGACACAATGACAGATTCTCCTGCACTGGAGACAAGCAGACTAGGTACAGCCATGGATTCAGTTGTGCTGGTCTGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 90 bp CACAGCTCCATGGTCCTGGGCTGGGTCTGTGCTTCTGCTCGGCTTTaGAGGAGAGGTAGCATAGGTAACCGTGTCTCTGATAGTCCCATT +
Preference number: 6 (lower is better)
Translates to: HSSMVLGWVCASARL*RRGSIGNRVSDSPI
Trigger: AATGGGACTATCAGAGACACGGTTACCTATGCTACCTCTCCTCAAAAGCCGAGCAGAAGCACAGACCCAGCCCAGGACCATGGAGCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 72 bp GCTCACTTGGGACTTGAAGAGGGTGTTGACCAGTGTTaGCTTGCCCAGTCCACTCTGGCCAACGACCATGAT +
Preference number: 6 (lower is better)
Translates to: AHLGLEEGVDQC*LAQSTLANDHD
Trigger: ATCATGGTCGTTGGCCAGAGTGGACTGGGCAAGTCAACACTGGTCAACACCCTCTTCAAGTCCCAAGTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 72 bp GCAAACTTGAAGCAGACAGCCTCCCTTCTCTGTGGGTaGCAGCCTCCTTGTGCAAACTGGGCAATTCTTCCC +
Preference number: 6 (lower is better)
Translates to: ANLKQTASLLCG*QPPCANWAILP
Trigger: GGGAAGAATTGCCCAGTTTGCACAAGGAGGCTGTCACCCACAGAGAAGGGAGGCTGTCTGCTTCAAGTTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 72 bp TGGGACCTGGCCCCGGGAGGCTTGACGAACTCTGAATaGACTGAGCTTGGAAAGGTAAAGTCAGGCATGAAG +
Preference number: 6 (lower is better)
Translates to: WDLAPGGLTNSE*TELGKVKSGMK
Trigger: CTTCATGCCTGACTTTACCTTTCCAAGCTCAGTTCATTCAGAGTTCGTCAAGCCTCCCGGGGCCAGGTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp CCAACCTGGTTATGCCCTGCTTGGCCTCATCCGATGTaGGCAAAGCCACGTTTGAGTTCCCCGTGGTCAAAA +
Preference number: 6 (lower is better)
Translates to: PTWLCPAWPHPM*AKPRLSSPWSK
Trigger: TTTTGACCACGGGGAACTCAAACGTGGCTTTGCCAACATCGGATGAGGCCAAGCAGGGCATAACCAGGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp ATGGTCCTGGGCTGGGTCTGTGCTTCTGCTCGGCTTTaGAGGAGAGGTAGCATAGGTAACCGTGTCTCTGAT +
Preference number: 6 (lower is better)
Translates to: MVLGWVCASARL*RRGSIGNRVSD
Trigger: ATCAGAGACACGGTTACCTATGCTACCTCTCCTCAAAAGCCGAGCAGAAGCACAGACCCAGCCCAGGACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 90 bp CATGAAGACACCAGAGGTTTATTCCCTGTGGGTGTTCTGCTGGCTTaGGTAAGTTCTGGGTTCCCATGGCCTTCAGAGGAGGTCCTGACC +
Preference number: 6 (lower is better)
Translates to: HEDTRGLFPVGVLLA*VSSGFPWPSEEVLT
Trigger: GGTCAGGACCTCCTCTGAAGGCCATGGGAACCCAGAACTTACCAAAGCCAGCAGAACACCCACAGGGAATAAACCTCTGGTGTCTTCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 72 bp CTGCTTGGCCTCATCCGATGTTGGCAAAGCCACGTTTaGGTTCCCCGTGGTCAAAAGCTTGACACTTTCCTG +
Preference number: 6 (lower is better)
Translates to: LLGLIRCWQSHV*VPRGQKLDTFL
Trigger: CAGGAAAGTGTCAAGCTTTTGACCACGGGGAACTCAAACGTGGCTTTGCCAACATCGGATGAGGCCAAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS GCA 72 bp GCCAAAGCTTTGACTGTGTCCAACCTGGTTATGCCCTaGTTGGCCTCATCCGATGTTGGCAAAGCCACGTTT +
Preference number: 6 (lower is better)
Translates to: AKALTVSNLVMP*LASSDVGKATF
Trigger: AAACGTGGCTTTGCCAACATCGGATGAGGCCAAGCAGGGCATAACCAGGTTGGACACAGTCAAAGCTTTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp AGCAGTGGACACGGGTGTCAGGGATGCGTTTCTTCCTaGCAATGTTCACCTCCTCCTTCAGGAACTTTTCGT +
Preference number: 6 (lower is better)
Translates to: SSGHGCQGCVSS*QCSPPPSGTFR
Trigger: ACGAAAAGTTCCTGAAGGAGGAGGTGAACATTGCCAGGAAGAAACGCATCCCTGACACCCGTGTCCACTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000230365.2
ENSMUST00000230418.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp GACTTGCCCAGTCCACTCTGGCCAACGACCATGATGTaGAAGTCAAAGCCAGTCTTCATGGTCTTCTTGCGC +
Preference number: 6 (lower is better)
Translates to: DLPSPLWPTTMM*KSKPVFMVFLR
Trigger: GCGCAAGAAGACCATGAAGACTGGCTTTGACTTCAACATCATGGTCGTTGGCCAGAGTGGACTGGGCAAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000230365.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp ACCAGAGGTTTATTCCCTGTGGGTGTTCTGCTGGCTTaGGTAAGTTCTGGGTTCCCATGGCCTTCAGAGGAG +
Preference number: 6 (lower is better)
Translates to: TRGLFPVGVLLA*VSSGFPWPSEE
Trigger: CTCCTCTGAAGGCCATGGGAACCCAGAACTTACCAAAGCCAGCAGAACACCCACAGGGAATAAACCTCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 90 bp CCCTGTTGGGACATACTACAGGCCCTGGATCTAATGCTTGGCTGTTaGGAATTCTCTAGGACACTGCTTTGGGGGAAGGCATCCAAACGC +
Preference number: 6 (lower is better)
Translates to: PCWDILQALDLMLGC*EFSRTLLWGKASKR
Trigger: GCGTTTGGATGCCTTCCCCCAAAGCAGTGTCCTAGAGAATTCCAAACAGCCAAGCATTAGATCCAGGGCCTGTAGTATGTCCCAACAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 90 bp TGCTTGTCTGATGCTGCAGTTACCAAATTCGGAACCTGGCCTGACTaGGTTGTCACTGCTCTAGCTAAATCCCTGGCTGTGCCTGCTGCA +
Preference number: 6 (lower is better)
Translates to: CLSDAAVTKFGTWPD*VVTALAKSLAVPAA
Trigger: TGCAGCAGGCACAGCCAGGGATTTAGCTAGAGCAGTGACAACCAAGTCAGGCCAGGTTCCGAATTTGGTAACTGCAGCATCAGACAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 72 bp ACAGCCTCCTTGTGCAAACTGGGCAATTCTTCCCAATaGGAAAGTGAGGCATCTAAGGGCCGCGTTTGGACA +
Preference number: 6 (lower is better)
Translates to: TASLCKLGNSSQ*ESEASKGRVWT
Trigger: TGTCCAAACGCGGCCCTTAGATGCCTCACTTTCTCATTGGGAAGAATTGCCCAGTTTGCACAAGGAGGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp GATGCTGCAGTTACCAAATTCGGAACCTGGCCTGACTaGGTTGTCACTGCTCTAGCTAAATCCCTGGCTGTG +
Preference number: 6 (lower is better)
Translates to: DAAVTKFGTWPD*VVTALAKSLAV
Trigger: CACAGCCAGGGATTTAGCTAGAGCAGTGACAACCAAGTCAGGCCAGGTTCCGAATTTGGTAACTGCAGCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp GGCAAAGCCACGTTTGAGTTCCCCGTGGTCAAAAGCTaGACACTTTCCTGCTTGTCTGATGCTGCAGTTACC +
Preference number: 6 (lower is better)
Translates to: GKATFEFPVVKS*TLSCLSDAAVT
Trigger: GGTAACTGCAGCATCAGACAAGCAGGAAAGTGTCAAGCTTTTGACCACGGGGAACTCAAACGTGGCTTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 72 bp ACAGCTTTTTGTTCGGAGGGAGGCCTCCATTGTCATTaGGCCTCTTGGCCCTGTAAGTCTCATAGTGGATGT +
Preference number: 6 (lower is better)
Translates to: TAFCSEGGLHCH*ASWPCKSHSGC
Trigger: ACATCCACTATGAGACTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCCGAACAAAAAGCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000230365.2
ENSMUST00000238416.3
CDS TCA 72 bp GCAAAGCCACGTTTGAGTTCCCCGTGGTCAAAAGCTTaGCACTTTCCTGCTTGTCTGATGCTGCAGTTACCA +
Preference number: 6 (lower is better)
Translates to: AKPRLSSPWSKA*HFPACLMLQLP
Trigger: TGGTAACTGCAGCATCAGACAAGCAGGAAAGTGTCAAGCTTTTGACCACGGGGAACTCAAACGTGGCTTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp ATGCTTGGCTGTTTGGAATTCTCTAGGACACTGCTTTaGGGGAAGGCATCCAAACGCCCAGTCTTCTTGATG +
Preference number: 6 (lower is better)
Translates to: MLGCLEFSRTLL*GKASKRPVFLM
Trigger: CATCAAGAAGACTGGGCGTTTGGATGCCTTCCCCCAAAGCAGTGTCCTAGAGAATTCCAAACAGCCAAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp TCACTTTTCCTGACTTGGATACTACAGGTAAGTTGGTaGCCAGGTCCATCCTGGCATCCAGAACAGGAAGCT +
Preference number: 6 (lower is better)
Translates to: SLFLTWILQVSW*PGPSWHPEQEA
Trigger: AGCTTCCTGTTCTGGATGCCAGGATGGACCTGGCCACCAACTTACCTGTAGTATCCAAGTCAGGAAAAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp CTGTCACTTTTCCTGACTTGGATACTACAGGTAAGTTaGTGGCCAGGTCCATCCTGGCATCCAGAACAGGAA +
Preference number: 6 (lower is better)
Translates to: LSLFLTWILQVS*WPGPSWHPEQE
Trigger: TTCCTGTTCTGGATGCCAGGATGGACCTGGCCACCAACTTACCTGTAGTATCCAAGTCAGGAAAAGTGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp TGCCTGCTGCAATTGAGTCTGTCACTTTTCCTGACTTaGATACTACAGGTAAGTTGGTGGCCAGGTCCATCC +
Preference number: 6 (lower is better)
Translates to: CLLQLSLSLFLT*ILQVSWWPGPS
Trigger: GGATGGACCTGGCCACCAACTTACCTGTAGTATCCAAGTCAGGAAAAGTGACAGACTCAATTGCAGCAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp CTTCTGACCAGTCTGGACTGGTTTAGTGTAGGCATATaGATAGCCAATTCCGGTCTGTGGAGAGCCACTGTG +
Preference number: 6 (lower is better)
Translates to: LLTSLDWFSVGI*IANSGLWRATV
Trigger: CACAGTGGCTCTCCACAGACCGGAATTGGCTATCAATATGCCTACACTAAACCAGTCCAGACTGGTCAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp TCTGTCACTTTTCCTGACTTGGATACTACAGGTAAGTaGGTGGCCAGGTCCATCCTGGCATCCAGAACAGGA +
Preference number: 6 (lower is better)
Translates to: SVTFPDLDTTGK*VARSILASRTG
Trigger: TCCTGTTCTGGATGCCAGGATGGACCTGGCCACCAACTTACCTGTAGTATCCAAGTCAGGAAAAGTGACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 72 bp GTGCCTGCTGCAATTGAGTCTGTCACTTTTCCTGACTaGGATACTACAGGTAAGTTGGTGGCCAGGTCCATC +
Preference number: 6 (lower is better)
Translates to: VPAAIESVTFPD*DTTGKLVARSI
Trigger: GATGGACCTGGCCACCAACTTACCTGTAGTATCCAAGTCAGGAAAAGTGACAGACTCAATTGCAGCAGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp TGCTTGTCTGATGCTGCAGTTACCAAATTCGGAACCTaGCCTGACTTGGTTGTCACTGCTCTAGCTAAATCC +
Preference number: 6 (lower is better)
Translates to: CLSDAAVTKFGT*PDLVVTALAKS
Trigger: GGATTTAGCTAGAGCAGTGACAACCAAGTCAGGCCAGGTTCCGAATTTGGTAACTGCAGCATCAGACAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp GAAAGTGAGGCATCTAAGGGCCGCGTTTGGACATTCTaGTGTATTGTTAAGGAAATAGAGCTGAGTTTCCTG +
Preference number: 6 (lower is better)
Translates to: ESEASKGRVWTF*CIVKEIELSFL
Trigger: CAGGAAACTCAGCTCTATTTCCTTAACAATACACCAGAATGTCCAAACGCGGCCCTTAGATGCCTCACTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp ATTCCGGTCTGTGGAGAGCCACTGTGCCTATATGTCTaGCTTTATCTAGTTTTGTGCTCACAACAGACACAT +
Preference number: 6 (lower is better)
Translates to: IPVCGEPLCLYV*LYLVLCSQQTH
Trigger: ATGTGTCTGTTGTGAGCACAAAACTAGATAAAGCCAGACATATAGGCACAGTGGCTCTCCACAGACCGGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CAA 90 bp CTGGCAATGTTCACCTCCTCCTTCAGGAACTTTTCGTACTGTTCGTaGATGTATTTCTCAATGGGCTCCCAGCAGTTTTCATTGTTGATC +
Preference number: 6 (lower is better)
Translates to: LAMFTSSFRNFSYCS*MYFSMGSQQFSLLI
Trigger: GATCAACAATGAAAACTGCTGGGAGCCCATTGAGAAATACATCAACGAACAGTACGAAAAGTTCCTGAAGGAGGAGGTGAACATTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000230365.2
ENSMUST00000230418.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS TCA 72 bp TCACCTCCTCCTTCAGGAACTTTTCGTACTGTTCGTTaGTGTATTTCTCAATGGGCTCCCAGCAGTTTTCAT +
Preference number: 6 (lower is better)
Translates to: SPPPSGTFRTVR*CISQWAPSSFH
Trigger: ATGAAAACTGCTGGGAGCCCATTGAGAAATACATCAACGAACAGTACGAAAAGTTCCTGAAGGAGGAGGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000023095.14
ENSMUST00000116423.3
ENSMUST00000230365.2
ENSMUST00000230418.2
ENSMUST00000238416.3
ENSMUST00000239048.2
CDS CCA 72 bp TTTAGTGTAGGCATATTGATAGCCAATTCCGGTCTGTaGAGAGCCACTGTGCCTATATGTCTGGCTTTATCT +
Preference number: 6 (lower is better)
Translates to: FSVGILIANSGL*RATVPICLALS
Trigger: AGATAAAGCCAGACATATAGGCACAGTGGCTCTCCACAGACCGGAATTGGCTATCAATATGCCTACACTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000238416.3
ENSMUST00000239048.2