Pregenerated sensors for SEPHS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049091Ensembl transcript IDs: ENSMUST00000082428.6
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGGAAGCTTTGGATGGGCCTGGAGGAACCATGCAAGCAGCCTTTaGAAAGGTCTTAAAATCAACCCTGGCCAGCAGTCCCTGAGCGGG | + |
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Preference number: 1 (lower is better) Translates to: TGSFGWAWRNHASSL*KGLKINPGQQSLSG Trigger: CCCGCTCAGGGACTGCTGGCCAGGGTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATGGTTCCTCCAGGCCCATCCAAAGCTTCCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| 3UTR TCA 90 bp | GCAGCCTTTGGAAAGGTCTTAAAATCAACCCTGGCCAGCAGTCCCTaGGCGGGTAGAATGGCTCCGAGTTCCCAACAACCGCTATTCCAT | + |
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Preference number: 1 (lower is better) Translates to: AAFGKVLKSTLASSP*AGRMAPSSQQPLFH Trigger: ATGGAATAGCGGTTGTTGGGAACTCGGAGCCATTCTACCCGCTCAGGGACTGCTGGCCAGGGTTGATTTTAAGACCTTTCCAAAGGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| 3UTR-3UTR TCA 90 bp | GCACATACAGGAAGCTTTGGATGGGCCTGGAGGAACCATGCAAGCAGCCTTTGGCTGGCCAGCAGTCCCTaGGCGGGTAGAATGGCTCCG | + |
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Preference number: 2 (lower is better) Translates to: AHTGSFGWAWRNHASSLWLASSP*AGRMAP Trigger: CGGAGCCATTCTACCCGCTCAGGGACTGCTGGCCAG...CCAAAGGCTGCTTGCATGGTTCCTCCAGGCCCATCCAAAGCTTCCTGTATGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| 3UTR CAA 90 bp | CCGCAGCGCCATTACTCACAGGCCTGGATGCACATACAGGAAGCTTaGGATGGGCCTGGAGGAACCATGCAAGCAGCCTTTGGAAAGGTC | + |
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Preference number: 2 (lower is better) Translates to: PQRHYSQAWMHIQEA*DGPGGTMQAAFGKV Trigger: GACCTTTCCAAAGGCTGCTTGCATGGTTCCTCCAGGCCCATCCAAAGCTTCCTGTATGTGCATCCAGGCCTGTGAGTAATGGCGCTGCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| 3UTR-3UTR GCA 90 bp | AGTTTCAGTGTAAGATTCAATGGCCACCGACACCTGGCTCTGAGGTTTGTTCAGGGCCTGGAGGAACCATaGAAGCAGCCTTTGGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: SFSVRFNGHRHLALRFVQGLEEP*KQPLER Trigger: CCTTTCCAAAGGCTGCTTGCATGGTTCCTCCAGGCC...CTGAACAAACCTCAGAGCCAGGTGTCGGTGGCCATTGAATCTTACACTGAAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| 3UTR-3UTR CCA 90 bp | CTTTGGGAAACGGGTTTTTGCTCCTCATGCTCTCAACAGATGAACACACATCCGCATTACTCACAGGCCTaGATGCACATACAGGAAGCT | + |
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Preference number: 2 (lower is better) Translates to: LWETGFCSSCSQQMNTHPHYSQA*MHIQEA Trigger: AGCTTCCTGTATGTGCATCCAGGCCTGTGAGTAATG...CGGATGTGTGTTCATCTGTTGAGAGCATGAGGAGCAAAAACCCGTTTCCCAAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| 3UTR-3UTR CCA 90 bp | AGTTTCAGTGTAAGATTCAATGGCCACCGACACCTGGCTCTGAGGTTTGTTCAGAGAGACCAAGTCAGGTaGCTAGTCTTCCTTTCCTGT | + |
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Preference number: 2 (lower is better) Translates to: SFSVRFNGHRHLALRFVQRDQVR*LVFLSC Trigger: ACAGGAAAGGAAGACTAGCCACCTGACTTGGTCTCT...CTGAACAAACCTCAGAGCCAGGTGTCGGTGGCCATTGAATCTTACACTGAAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| 3UTR-3UTR CCA 90 bp | ATCCCTAAAACTGAAATAGCCTCCTCTTGCTTTGGGAAACGGGTTTTTGCTCCTCATGCAAGCAGCCTTTaGAAAGGTCTTAAAATCAAC | + |
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Preference number: 2 (lower is better) Translates to: IPKTEIASSCFGKRVFAPHASSL*KGLKIN Trigger: GTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATG...AGGAGCAAAAACCCGTTTCCCAAAGCAAGAGGAGGCTATTTCAGTTTTAGGGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| 3UTR CCA 72 bp | TTTGGATGGGCCTGGAGGAACCATGCAAGCAGCCTTTaGAAAGGTCTTAAAATCAACCCTGGCCAGCAGTCC | + |
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Preference number: 3 (lower is better) Translates to: FGWAWRNHASSL*KGLKINPGQQS Trigger: GGACTGCTGGCCAGGGTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATGGTTCCTCCAGGCCCATCCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| 3UTR GCA 72 bp | CTCCTCTTGCTTTGGGAAACGGGTTTTTGCTCCTCATaGTCTCAACAGATGAACACACATCCGCAGCGCCAT | + |
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Preference number: 3 (lower is better) Translates to: LLLLWETGFCSS*SQQMNTHPQRH Trigger: ATGGCGCTGCGGATGTGTGTTCATCTGTTGAGAGCATGAGGAGCAAAAACCCGTTTCCCAAAGCAAGAGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR TCA 90 bp | GACCAAGTCAGGTGGCTAGTCTTCCTTTCCTGTCGGACAAGCTGCTCAACTCTTGCCGCCAGCTCGGGCTaGAGCCCAGTGTCTGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: DQVRWLVFLSCRTSCSTLAASSG*SPVSGA Trigger: AGCCCCAGACACTGGGCTTCAGCCCGAGCTGGCGGC...AAGAGTTGAGCAGCTTGTCCGACAGGAAAGGAAGACTAGCCACCTGACTTGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR TCA 90 bp | CAGAAGTTTCAGTGTAAGATTCAATGGCCACCGACACCTGGCTCTGAGGTTTGTCAGCGAGGGGAAGGCTaGGCCGGGGCCGGGCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: QKFQCKIQWPPTPGSEVCQRGEG*AGAGPG Trigger: ACCAGGCCCGGCCCCGGCTCAGCCTTCCCCTCGCTG...ACAAACCTCAGAGCCAGGTGTCGGTGGCCATTGAATCTTACACTGAAACTTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR GCA 90 bp | GCACATACAGGAAGCTTTGGATGGGCCTGGAGGAACCATGCAAGCAGCCTTTGGCTGTCCACCGGTCACTaGAGTGCCTCCCTCCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: AHTGSFGWAWRNHASSLWLSTGH*SASLLR Trigger: GCGGAGGAGGGAGGCACTGCAGTGACCGGTGGACAG...CCAAAGGCTGCTTGCATGGTTCCTCCAGGCCCATCCAAAGCTTCCTGTATGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR CCA 90 bp | GGAGGAACCATGCAAGCAGCCTTTGGAAAGGTCTTAAAATCAACCCTGGCCAGCCCATGGTTTCTCCGCTaGCGCCCGCCGCCGCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: GGTMQAAFGKVLKSTLASPWFLR*RPPPPL Trigger: AAGCGGCGGCGGCGGGCGCCAGCGGAGAAACCATGG...GCTGGCCAGGGTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATGGTTCCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR CCA 90 bp | CAGAAGTTTCAGTGTAAGATTCAATGGCCACCGACACCTGGCTCTGAGGTTTGTCGGGGCCGGGCCTGGTaGACAGGCCCCCTTCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: QKFQCKIQWPPTPGSEVCRGRAW*TGPLPA Trigger: TGCAGGAAGGGGGCCTGTCCACCAGGCCCGGCCCCG...ACAAACCTCAGAGCCAGGTGTCGGTGGCCATTGAATCTTACACTGAAACTTCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR TCA 90 bp | TCTCAACAGATGAACACACATCCGCAGCGCCATTACTCACAGGCCTGGATGCACCGTGCCTCAGGGGGATaGCGCAGGAGTCCATGCCAA | + |
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Preference number: 4 (lower is better) Translates to: SQQMNTHPQRHYSQAWMHRASGG*RRSPCQ Trigger: TTGGCATGGACTCCTGCGTCATCCCCCTGAGGCACG...GTGCATCCAGGCCTGTGAGTAATGGCGCTGCGGATGTGTGTTCATCTGTTGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR GCA 90 bp | GGGCCTGGAGGAACCATGCAAGCAGCCTTTGGAAAGGTCTTAAAATCAACCCTGAGCGACAGGCCTCCGTaGCTCAGGGGGATGACGCAG | + |
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Preference number: 4 (lower is better) Translates to: GPGGTMQAAFGKVLKSTLSDRPP*LRGMTQ Trigger: CTGCGTCATCCCCCTGAGGCACGGAGGCCTGTCGCT...CAGGGTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATGGTTCCTCCAGGCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR TCA 90 bp | TATCAGAGACCAAGTCAGGTGGCTAGTCTTCCTTTCCTGTCGGACAAGCTGCTCGTCCCTCCAGGAGTTTaGGCAGGGTCTCCTGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: YQRPSQVASLPFLSDKLLVPPGV*AGSPGG Trigger: TCCCCCAGGAGACCCTGCTCAAACTCCTGGAGGGAC...GAGCAGCTTGTCCGACAGGAAAGGAAGACTAGCCACCTGACTTGGTCTCTGATA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR TCA 90 bp | GGGCCTGGAGGAACCATGCAAGCAGCCTTTGGAAAGGTCTTAAAATCAACCCTGCCCAGAGGTTTCAGCTaGCGTTCCTTGGAGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: GPGGTMQAAFGKVLKSTLPRGFS*RSLEEA Trigger: GGCCTCCTCCAAGGAACGTCAGCTGAAACCTCTGGG...CAGGGTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATGGTTCCTCCAGGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR GCA 90 bp | GACCAAGTCAGGTGGCTAGTCTTCCTTTCCTGTCGGACAAGCTGCTCAACTCTTAAGAAGTCGGTGGTCTaGACCAGCGACAGGCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: DQVRWLVFLSCRTSCSTLKKSVV*TSDRPP Trigger: CGGAGGCCTGTCGCTGGTGCAGACCACCGACTTCTT...AAGAGTTGAGCAGCTTGTCCGACAGGAAAGGAAGACTAGCCACCTGACTTGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR CCA 90 bp | GCTTTGGGAAACGGGTTTTTGCTCCTCATGCTCTCAACAGATGAACACACATCCTGCACCGTCTCTTCCTaGCCCCCGACCAGACCCGAG | + |
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Preference number: 4 (lower is better) Translates to: ALGNGFLLLMLSTDEHTSCTVSS*PPTRPE Trigger: CTCGGGTCTGGTCGGGGGCCAGGAAGAGACGGTGCA...GGATGTGTGTTCATCTGTTGAGAGCATGAGGAGCAAAAACCCGTTTCCCAAAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR CCA 90 bp | AGTTTCAGTGTAAGATTCAATGGCCACCGACACCTGGCTCTGAGGTTTGTTCAGCGAACGGCCGGTAGTTaGAGAAACTCCGGCCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: SFSVRFNGHRHLALRFVQRTAGS*RNSGRQ Trigger: CTGCCGGCCGGAGTTTCTCCAACTACCGGCCGTTCG...CTGAACAAACCTCAGAGCCAGGTGTCGGTGGCCATTGAATCTTACACTGAAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR CCA 90 bp | GGAGGAACCATGCAAGCAGCCTTTGGAAAGGTCTTAAAATCAACCCTGGCCAGCGGATTATCCAGCCATTaGTGGGCATTGGCAGCAACC | + |
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Preference number: 4 (lower is better) Translates to: GGTMQAAFGKVLKSTLASGLSSH*WALAAT Trigger: GGTTGCTGCCAATGCCCACCAATGGCTGGATAATCC...GCTGGCCAGGGTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATGGTTCCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR TCA 90 bp | GGATGGGCCTGGAGGAACCATGCAAGCAGCCTTTGGAAAGGTCTTAAAATCAACACGATCCAAGCTTGGTaGCCCTCTCCGTACTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: GWAWRNHASSLWKGLKINTIQAW*PSPYLE Trigger: TTCCAAGTACGGAGAGGGTCACCAAGCTTGGATCGT...GTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATGGTTCCTCCAGGCCCATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR GCA 90 bp | TATCAGAGACCAAGTCAGGTGGCTAGTCTTCCTTTCCTGTCGGACAAGCTGCTCTTCCCTTCTCCACGATaGCAACGATCCAAGCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: YQRPSQVASLPFLSDKLLFPSPR*QRSKLG Trigger: ACCAAGCTTGGATCGTTGGCATCGTGGAGAAGGGAA...GAGCAGCTTGTCCGACAGGAAAGGAAGACTAGCCACCTGACTTGGTCTCTGATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR GCA 90 bp | AGAAGTTTCAGTGTAAGATTCAATGGCCACCGACACCTGGCTCTGAGGTTTGTTCAAAAGCGGGCCGCCTaGTCTCTTGGCAGACAAATC | + |
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Preference number: 4 (lower is better) Translates to: RSFSVRFNGHRHLALRFVQKRAA*SLGRQI Trigger: GATTTGTCTGCCAAGAGAGCAGGCGGCCCGCTTTTG...AACAAACCTCAGAGCCAGGTGTCGGTGGCCATTGAATCTTACACTGAAACTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR TCA 90 bp | GACCAAGTCAGGTGGCTAGTCTTCCTTTCCTGTCGGACAAGCTGCTCAACTCTTTGTTTTGCCAGGTTCTaGGAGTGTCCTAATATGCCA | + |
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Preference number: 4 (lower is better) Translates to: DQVRWLVFLSCRTSCSTLCFARF*ECPNMP Trigger: TGGCATATTAGGACACTCTCAGAACCTGGCAAAACA...AAGAGTTGAGCAGCTTGTCCGACAGGAAAGGAAGACTAGCCACCTGACTTGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR CCA 90 bp | GGGCCTGGAGGAACCATGCAAGCAGCCTTTGGAAAGGTCTTAAAATCAACCCTGTTTTCACTCATGCTCTaGCTCACACTGAGTAACATC | + |
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Preference number: 4 (lower is better) Translates to: GPGGTMQAAFGKVLKSTLFSLML*LTLSNI Trigger: GATGTTACTCAGTGTGAGCCAGAGCATGAGTGAAAA...CAGGGTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATGGTTCCTCCAGGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR TCA 90 bp | GCTTTGGGAAACGGGTTTTTGCTCCTCATGCTCTCAACAGATGAACACACATCCTGCTCTGGCTCACACTaGGTAACATCAACATGTTGT | + |
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Preference number: 4 (lower is better) Translates to: ALGNGFLLLMLSTDEHTSCSGSH*VTSTCC Trigger: ACAACATGTTGATGTTACTCAGTGTGAGCCAGAGCA...GGATGTGTGTTCATCTGTTGAGAGCATGAGGAGCAAAAACCCGTTTCCCAAAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR TCA 90 bp | CAGAAGTTTCAGTGTAAGATTCAATGGCCACCGACACCTGGCTCTGAGGTTTGTCGTACTTGGAAGATTTaGTTTCCGAACAAAAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: QKFQCKIQWPPTPGSEVCRTWKI*FPNKSG Trigger: CCCGCTTTTGTTCGGAAATCAAATCTTCCAAGTACG...ACAAACCTCAGAGCCAGGTGTCGGTGGCCATTGAATCTTACACTGAAACTTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR TCA 90 bp | GACCAAGTCAGGTGGCTAGTCTTCCTTTCCTGTCGGACAAGCTGCTCAACTCTTCACTATCAGGCATTATaGATTCATTTTGCTGACACA | + |
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Preference number: 4 (lower is better) Translates to: DQVRWLVFLSCRTSCSTLHYQAL*IHFADT Trigger: TGTGTCAGCAAAATGAATTCATAATGCCTGATAGTG...AAGAGTTGAGCAGCTTGTCCGACAGGAAAGGAAGACTAGCCACCTGACTTGGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS GCA 90 bp | ACCGTCTCTTCCTGGCCCCCGACCAGACCCGAGGTAAGCGGGGGCTaGAGCGCGGGCCGCGTCAGTCCCTCCAGGAGTTTGAGCAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: TVSSWPPTRPEVSGG*SAGRVSPSRSLSRV Trigger: GACCCTGCTCAAACTCCTGGAGGGACTGACGCGGCCCGCGCTGCAGCCCCCGCTTACCTCGGGTCTGGTCGGGGGCCAGGAAGAGACGGT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR CAA 90 bp | GGGCCTGGAGGAACCATGCAAGCAGCCTTTGGAAAGGTCTTAAAATCAACCCTGAGTCCCTCCAGGAGTTaGAGCAGGGTCTCCTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: GPGGTMQAAFGKVLKSTLSPSRS*SRVSWG Trigger: CCCCCAGGAGACCCTGCTCAAACTCCTGGAGGGACT...CAGGGTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATGGTTCCTCCAGGCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR CAA 90 bp | GGGCCTGGAGGAACCATGCAAGCAGCCTTTGGAAAGGTCTTAAAATCAACCCTGCTGATCGCAGCCATCTaGGCAATTATTGGCAGATTA | + |
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Preference number: 5 (lower is better) Translates to: GPGGTMQAAFGKVLKSTLLIAAI*AIIGRL Trigger: TAATCTGCCAATAATTGCCAAGATGGCTGCGATCAG...CAGGGTTGATTTTAAGACCTTTCCAAAGGCTGCTTGCATGGTTCCTCCAGGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS-3UTR CAA 90 bp | CAGAAGTTTCAGTGTAAGATTCAATGGCCACCGACACCTGGCTCTGAGGTTTGTCTGGAAACCACCATCTaGATTTTATTCCATTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: QKFQCKIQWPPTPGSEVCLETTI*ILFHFS Trigger: TGAGAAATGGAATAAAATCAAGATGGTGGTTTCCAG...ACAAACCTCAGAGCCAGGTGTCGGTGGCCATTGAATCTTACACTGAAACTTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS CCA 72 bp | GGCCCAAGGAACCTTCTGCGGCCACTAGCGCCGCCATaGTTTCTCCGCTGGCGCCCGCCGCCGCCGCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: GPRNLLRPLAPP*FLRWRPPPPLP Trigger: CGGAAGCGGCGGCGGCGGGCGCCAGCGGAGAAACCATGGCGGCGCTAGTGGCCGCAGAAGGTTCCTTGGGCC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS GCA 72 bp | TCCTGGCCCCCGACCAGACCCGAGGTAAGCGGGGGCTaGAGCGCGGGCCGCGTCAGTCCCTCCAGGAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: SWPPTRPEVSGG*SAGRVSPSRSL Trigger: CAAACTCCTGGAGGGACTGACGCGGCCCGCGCTGCAGCCCCCGCTTACCTCGGGTCTGGTCGGGGGCCAGGA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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| CDS CAA 72 bp | GCAGTGCCTCCCTCCTCCGCAGCGTCACGAAAGCCTTaGATCATGAGCGGTGTCACCTTCTCTCGTTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: AVPPSSAASRKP*IMSGVTFSRSF Trigger: AAAGGAACGAGAGAAGGTGACACCGCTCATGATCAAAGGCTTTCGTGACGCTGCGGAGGAGGGAGGCACTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082428.6 |
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