Pregenerated sensors for SEPHS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026662Ensembl transcript IDs: ENSMUST00000027973.14, ENSMUST00000115019.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTCTGCTGGGGCCAGACTCTGGTGGCTTCAGTTCCAGTAAGAGGTaGATTTACAGGAGATTCTGGGGACACAAGCACGTGGCAGCCTCT | + |
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Preference number: 1 (lower is better) Translates to: PLLGPDSGGFSSSKR*IYRRFWGHKHVAAS Trigger: AGAGGCTGCCACGTGCTTGTGTCCCCAGAATCTCCTGTAAATGCACCTCTTACTGGAACTGAAGCCACCAGAGTCTGGCCCCAGCAGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR CCA 90 bp | CCAGTAAGAGGTGCATTTACAGGAGATTCTGGGGACACAAGCACGTaGCAGCCTCTTCCTTCCGCAGTTCCGCTGGTCCAGTGGCGGTTT | + |
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Preference number: 1 (lower is better) Translates to: PVRGAFTGDSGDTST*QPLPSAVPLVQWRF Trigger: AAACCGCCACTGGACCAGCGGAACTGCGGAAGGAAGAGGCTGCCACGTGCTTGTGTCCCCAGAATCTCCTGTAAATGCACCTCTTACTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 90 bp | TGTTCTTTGCACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATaGGACAAGCCGCTGTACCCGCTGAGCCATCTTACACAGCTCAAA | + |
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Preference number: 1 (lower is better) Translates to: CSLHMGSADRWSSAL*DKPLYPLSHLTQLK Trigger: TTTGAGCTGTGTAAGATGGCTCAGCGGGTACAGCGGCTTGTCTCATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR CCA 90 bp | TTAGTGGTTCTCAAGGGTTGTTATGCAGAGCCCTACAGGGTACATTaGAGAGATGGACTACCTGGTTCCACAGCCAGAACTGACTCTGGG | + |
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Preference number: 1 (lower is better) Translates to: LVVLKGCYAEPYRVH*RDGLPGSTARTDSG Trigger: CCCAGAGTCAGTTCTGGCTGTGGAACCAGGTAGTCCATCTCTCCAATGTACCCTGTAGGGCTCTGCATAACAACCCTTGAGAACCACTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR GCA 90 bp | TTCCTATATAGTGTCCAATTAGTGTCCTTCTGTGACAGCTTCCTCTaGTGGGGCCAGACTCTGGTGGCTTCAGTTCCAGTAAGAGGTGCA | + |
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Preference number: 1 (lower is better) Translates to: FLYSVQLVSFCDSFL*WGQTLVASVPVRGA Trigger: TGCACCTCTTACTGGAACTGAAGCCACCAGAGTCTGGCCCCAGCAGAGGAAGCTGTCACAGAAGGACACTAATTGGACACTATATAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 90 bp | TCTCCAGGGTGGAATTTTAGACTGGTACCAGAAGTCGGCAAGGCGTaGCTGCTGGACACATTAAGAGTCCCATGTAGACTTTGCCAAACT | + |
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Preference number: 1 (lower is better) Translates to: SPGWNFRLVPEVGKA*LLDTLRVPCRLCQT Trigger: AGTTTGGCAAAGTCTACATGGGACTCTTAATGTGTCCAGCAGTCACGCCTTGCCGACTTCTGGTACCAGTCTAAAATTCCACCCTGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 90 bp | CAGACAGATGGAGCTCAGCCTTATGAGACAAGCCGCTGTACCCGCTaGGCCATCTTACACAGCTCAAAACAGAACAATTTAAAGGCAATG | + |
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Preference number: 1 (lower is better) Translates to: QTDGAQPYETSRCTR*AILHSSKQNNLKAM Trigger: CATTGCCTTTAAATTGTTCTGTTTTGAGCTGTGTAAGATGGCTCAGCGGGTACAGCGGCTTGTCTCATAAGGCTGAGCTCCATCTGTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR GCA 90 bp | ACACAGCTCAAAACAGAACAATTTAAAGGCAATGCTGAACTCAGATaGAAGGGCCGCTCGCTCATGCATCAGAACAATCAGAAACTTCCA | + |
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Preference number: 1 (lower is better) Translates to: TQLKTEQFKGNAELR*KGRSLMHQNNQKLP Trigger: TGGAAGTTTCTGATTGTTCTGATGCATGAGCGAGCGGCCCTTGCATCTGAGTTCAGCATTGCCTTTAAATTGTTCTGTTTTGAGCTGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR GCA 90 bp | AATTTAAAGGCAATGCTGAACTCAGATGCAAGGGCCGCTCGCTCATaGATCAGAACAATCAGAAACTTCCACTTATTCATTACAACTCAT | + |
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Preference number: 1 (lower is better) Translates to: NLKAMLNSDARAARS*IRTIRNFHLFITTH Trigger: ATGAGTTGTAATGAATAAGTGGAAGTTTCTGATTGTTCTGATGCATGAGCGAGCGGCCCTTGCATCTGAGTTCAGCATTGCCTTTAAATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 90 bp | CATTCAAAAGGACTTTGGATTTTCACTGTGGCCTCTGATGTTTCATaGCTGCAATCCTTATGTGGATTCTTAATGAGAATGGGATACTCG | + |
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Preference number: 1 (lower is better) Translates to: HSKGLWIFTVASDVS*LQSLCGFLMRMGYS Trigger: CGAGTATCCCATTCTCATTAAGAATCCACATAAGGATTGCAGTCATGAAACATCAGAGGCCACAGTGAAAATCCAAAGTCCTTTTGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 90 bp | ACCCACTCCTCATTCAAAAGGACTTTGGATTTTCACTGTGGCCTCTaGTGTTTCATGACTGCAATCCTTATGTGGATTCTTAATGAGAAT | + |
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Preference number: 1 (lower is better) Translates to: THSSFKRTLDFHCGL*CFMTAILMWILNEN Trigger: ATTCTCATTAAGAATCCACATAAGGATTGCAGTCATGAAACATCAGAGGCCACAGTGAAAATCCAAAGTCCTTTTGAATGAGGAGTGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR TCA 90 bp | GCATTTACAGGAGATTCTGGGGACACAAGCACGTGGCAGCCTCTTCCTTCCGCATTGAAGTCAGGCGTTTaGGGACCCAGTGCCCTTGTG | + |
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Preference number: 2 (lower is better) Translates to: AFTGDSGDTSTWQPLPSALKSGV*GPSALV Trigger: CACAAGGGCACTGGGTCCTCAAACGCCTGACTTCAA...TGCGGAAGGAAGAGGCTGCCACGTGCTTGTGTCCCCAGAATCTCCTGTAAATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR GCA 90 bp | GCATTTACAGGAGATTCTGGGGACACAAGCACGTGGCAGCCTCTTCCTTCCGCACACTCCTCTCAGCAATaGCCGAGTGGCAGAAAAGCA | + |
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Preference number: 2 (lower is better) Translates to: AFTGDSGDTSTWQPLPSAHSSQQ*PSGRKA Trigger: TGCTTTTCTGCCACTCGGGCATTGCTGAGAGGAGTG...TGCGGAAGGAAGAGGCTGCCACGTGCTTGTGTCCCCAGAATCTCCTGTAAATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CCA 90 bp | AAGATTAGTGGTTCTCAAGGGTTGTTATGCAGAGCCCTACAGGGTACATTGGAGGGGGACACAAGCACGTaGCAGCCTCTTCCTTCCGCA | + |
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Preference number: 2 (lower is better) Translates to: KISGSQGLLCRALQGTLEGDTST*QPLPSA Trigger: TGCGGAAGGAAGAGGCTGCCACGTGCTTGTGTCCCC...CTCCAATGTACCCTGTAGGGCTCTGCATAACAACCCTTGAGAACCACTAATCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR TCA 90 bp | AGGTCACTGTTCTTTGCACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATGATTAGTGTCCTTCTGTaGCAGCTTCCTCTGCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: RSLFFAHGFCRQMELSLMISVLL*QLPLLG Trigger: CCCCAGCAGAGGAAGCTGTCACAGAAGGACACTAAT...CATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGTGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR GCA 90 bp | AGCACCTGCCATACTGAACTGAGAGAGCTACTGGATAAGAAGTCCCTCGAGTTATCTCAACTCAGAAGCTaGCTGGAGGTCGGGTGCATC | + |
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Preference number: 2 (lower is better) Translates to: STCHTELRELLDKKSLELSQLRS*LEVGCI Trigger: GATGCACCCGACCTCCAGGCAGCTTCTGAGTTGAGA...TAACTCGAGGGACTTCTTATCCAGTAGCTCTCTCAGTTCAGTATGGCAGGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR-3UTR GCA 90 bp | AAGATTAGTGGTTCTCAAGGGTTGTTATGCAGAGCCCTACAGGGTACATTGGAGTCTCAACTCAGAAGCTaGCTGGAGGTCGGGTGCATC | + |
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Preference number: 2 (lower is better) Translates to: KISGSQGLLCRALQGTLESQLRS*LEVGCI Trigger: GATGCACCCGACCTCCAGGCAGCTTCTGAGTTGAGA...CTCCAATGTACCCTGTAGGGCTCTGCATAACAACCCTTGAGAACCACTAATCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR GCA 90 bp | CAGGTCACTGTTCTTTGCACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATTTTAGAGAGCGCCTATaGGGCAAGAGACACACAGCT | + |
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Preference number: 2 (lower is better) Translates to: QVTVLCTWVLQTDGAQPYFRERL*GKRHTA Trigger: AGCTGTGTGTCTCTTGCCGCATAGGCGCTCTCTAAA...ATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGTGACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR GCA 90 bp | AGGTCACTGTTCTTTGCACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATGGCCAAGCAAAGCACCTaGCATACTGAACTGAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: RSLFFAHGFCRQMELSLMAKQST*HTELRE Trigger: CTCTCTCAGTTCAGTATGGCAGGTGCTTTGCTTGGC...CATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGTGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR GCA 90 bp | CAGGTCACTGTTCTTTGCACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATAGGGCCGCTCGCTCATaGATCAGAACAATCAGAAAC | + |
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Preference number: 2 (lower is better) Translates to: QVTVLCTWVLQTDGAQPYRAARS*IRTIRN Trigger: GTTTCTGATTGTTCTGATGCATGAGCGAGCGGCCCT...ATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGTGACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR TCA 90 bp | AAGATTAGTGGTTCTCAAGGGTTGTTATGCAGAGCCCTACAGGGTACATTGGAGTTCCGTGTTGAGGAGTaGGGTTGGGTGAGTTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: KISGSQGLLCRALQGTLEFRVEE*GWVSLQ Trigger: CTGCAAACTCACCCAACCTCACTCCTCAACACGGAA...CTCCAATGTACCCTGTAGGGCTCTGCATAACAACCCTTGAGAACCACTAATCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR TCA 90 bp | AAGATTAGTGGTTCTCAAGGGTTGTTATGCAGAGCCCTACAGGGTACATTGGAGTTCCACAGCCAGAACTaGCTCTGGGTCTCAGGAAAG | + |
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Preference number: 2 (lower is better) Translates to: KISGSQGLLCRALQGTLEFHSQN*LWVSGK Trigger: CTTTCCTGAGACCCAGAGTCAGTTCTGGCTGTGGAA...CTCCAATGTACCCTGTAGGGCTCTGCATAACAACCCTTGAGAACCACTAATCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR GCA 90 bp | GCATTTACAGGAGATTCTGGGGACACAAGCACGTGGCAGCCTCTTCCTTCCGCACTTTTATGTTGGAGCTaGAATGTTGACAATGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: AFTGDSGDTSTWQPLPSALLCWS*NVDNAG Trigger: ACCTGCATTGTCAACATTGCAGCTCCAACATAAAAG...TGCGGAAGGAAGAGGCTGCCACGTGCTTGTGTCCCCAGAATCTCCTGTAAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CCA 90 bp | AGCACCTGCCATACTGAACTGAGAGAGCTACTGGATAAGAAGTCCCTCGAGTTATCAGCAATGCCCGAGTaGCAGAAAAGCACCTTTAGA | + |
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Preference number: 2 (lower is better) Translates to: STCHTELRELLDKKSLELSAMPE*QKSTFR Trigger: TCTAAAGGTGCTTTTCTGCCACTCGGGCATTGCTGA...TAACTCGAGGGACTTCTTATCCAGTAGCTCTCTCAGTTCAGTATGGCAGGTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR-3UTR GCA 90 bp | CGGGGAGACCATCATGTCACTTACCATTCTGTCTTTCTAGAATGTCAACTGAGATTTAGAGAGCGCCTATaGGGCAAGAGACACACAGCT | + |
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Preference number: 2 (lower is better) Translates to: RGDHHVTYHSVFLECQLRFRERL*GKRHTA Trigger: AGCTGTGTGTCTCTTGCCGCATAGGCGCTCTCTAAA...TCTCAGTTGACATTCTAGAAAGACAGAATGGTAAGTGACATGATGGTCTCCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR-3UTR GCA 90 bp | TTCCTGAAATACAATGGTGGCTGCATCAGCCTTGTCCCACAATCACACTGTAATTCCAAGTGCATTCCATaGCAAGCAAAGCACCTGCCA | + |
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Preference number: 2 (lower is better) Translates to: FLKYNGGCISLVPQSHCNSKCIP*QAKHLP Trigger: TGGCAGGTGCTTTGCTTGGCATGGAATGCACTTGGA...ATTACAGTGTGATTGTGGGACAAGGCTGATGCAGCCACCATTGTATTTCAGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CCA 90 bp | TTCCTGAAATACAATGGTGGCTGCATCAGCCTTGTCCCACAATCACACTGTAATGTTCTTGACCATGTCTaGATGCCTAGAGATGCTGCC | + |
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Preference number: 2 (lower is better) Translates to: FLKYNGGCISLVPQSHCNVLDHV*MPRDAA Trigger: GGCAGCATCTCTAGGCATCCAGACATGGTCAAGAAC...ATTACAGTGTGATTGTGGGACAAGGCTGATGCAGCCACCATTGTATTTCAGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CCA 90 bp | CGGGGAGACCATCATGTCACTTACCATTCTGTCTTTCTAGAATGTCAACTGAGATCAGCAATGCCCGAGTaGCAGAAAAGCACCTTTAGA | + |
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Preference number: 2 (lower is better) Translates to: RGDHHVTYHSVFLECQLRSAMPE*QKSTFR Trigger: TCTAAAGGTGCTTTTCTGCCACTCGGGCATTGCTGA...TCTCAGTTGACATTCTAGAAAGACAGAATGGTAAGTGACATGATGGTCTCCCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR CAA 90 bp | TTTACCTCTCCCAACATTCCTTTTAAGATTAGTGGTTCTCAAGGGTaGTTATGCAGAGCCCTACAGGGTACATTGGAGAGATGGACTACC | + |
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Preference number: 2 (lower is better) Translates to: FTSPNIPFKISGSQG*LCRALQGTLERWTT Trigger: GGTAGTCCATCTCTCCAATGTACCCTGTAGGGCTCTGCATAACAACCCTTGAGAACCACTAATCTTAAAAGGAATGTTGGGAGAGGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR TCA 90 bp | CGGGGAGACCATCATGTCACTTACCATTCTGTCTTTCTAGAATGTCAACTGAGACAGATCAGACTGAGATaGGAGGCAGAAATGAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: RGDHHVTYHSVFLECQLRQIRLR*EAEMRR Trigger: TCTTCTCATTTCTGCCTCTCATCTCAGTCTGATCTG...TCTCAGTTGACATTCTAGAAAGACAGAATGGTAAGTGACATGATGGTCTCCCCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR-3UTR GCA 90 bp | CAGGTCACTGTTCTTTGCACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATAACCTGAAGACTTGGTaGTTTTTCTCTTTTGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: QVTVLCTWVLQTDGAQPYNLKTW*FFSFEV Trigger: GACTTCAAAAGAGAAAAAGCACCAAGTCTTCAGGTT...ATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGTGACCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CCA 90 bp | TTCCTGAAATACAATGGTGGCTGCATCAGCCTTGTCCCACAATCACACTGTAATACTGTTCTTTGCACATaGGTTCTGCAGACAGATGGA | + |
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Preference number: 2 (lower is better) Translates to: FLKYNGGCISLVPQSHCNTVLCT*VLQTDG Trigger: TCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGT...ATTACAGTGTGATTGTGGGACAAGGCTGATGCAGCCACCATTGTATTTCAGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR TCA 90 bp | AAGAAGTCCCTCGAGTTATTCGACTCAACTTTACAAATCAAACACTCGAAGGAGCAGATCAGACTGAGATaGGAGGCAGAAATGAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: KKSLELFDSTLQIKHSKEQIRLR*EAEMRR Trigger: TCTTCTCATTTCTGCCTCTCATCTCAGTCTGATCTG...CTCCTTCGAGTGTTTGATTTGTAAAGTTGAGTCGAATAACTCGAGGGACTTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR TCA 72 bp | CCGCTGGTCCAGTGGCGGTTTTCTGGTGTTCCGTGTTaGGGAGTGAGGTTGGGTGAGTTTGCAGAGCTCAGC | + |
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Preference number: 3 (lower is better) Translates to: PLVQWRFSGVPC*GVRLGEFAELS Trigger: GCTGAGCTCTGCAAACTCACCCAACCTCACTCCTCAACACGGAACACCAGAAAACCGCCACTGGACCAGCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR CCA 72 bp | GGTGCATTTACAGGAGATTCTGGGGACACAAGCACGTaGCAGCCTCTTCCTTCCGCAGTTCCGCTGGTCCAG | + |
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Preference number: 3 (lower is better) Translates to: GAFTGDSGDTST*QPLPSAVPLVQ Trigger: CTGGACCAGCGGAACTGCGGAAGGAAGAGGCTGCCACGTGCTTGTGTCCCCAGAATCTCCTGTAAATGCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 72 bp | TCCAGTGGCGGTTTTCTGGTGTTCCGTGTTGAGGAGTaGGGTTGGGTGAGTTTGCAGAGCTCAGCTTTGGGG | + |
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Preference number: 3 (lower is better) Translates to: SSGGFLVFRVEE*GWVSLQSSALG Trigger: CCCCAAAGCTGAGCTCTGCAAACTCACCCAACCTCACTCCTCAACACGGAACACCAGAAAACCGCCACTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CAA 90 bp | TTACAGGAGATTCTGGGGACACAAGCACGTGGCAGCCTCTTCCTTCCGCAGTTCTTGCAGAGCTCAGCTTaGGGGCCTGTCCTGTTAGTA | + |
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Preference number: 3 (lower is better) Translates to: LQEILGTQARGSLFLPQFLQSSA*GPVLLV Trigger: TACTAACAGGACAGGCCCCAAAGCTGAGCTCTGCAA...GAACTGCGGAAGGAAGAGGCTGCCACGTGCTTGTGTCCCCAGAATCTCCTGTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 72 bp | GTTTTCTGGTGTTCCGTGTTGAGGAGTGAGGTTGGGTaGGTTTGCAGAGCTCAGCTTTGGGGCCTGTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: VFWCSVLRSEVG*VCRAQLWGLSC Trigger: ACAGGACAGGCCCCAAAGCTGAGCTCTGCAAACTCACCCAACCTCACTCCTCAACACGGAACACCAGAAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 72 bp | TTGGAGAGATGGACTACCTGGTTCCACAGCCAGAACTaGCTCTGGGTCTCAGGAAAGTGCAGAAAGGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: LERWTTWFHSQN*LWVSGKCRKAS Trigger: GGAGGCCTTTCTGCACTTTCCTGAGACCCAGAGTCAGTTCTGGCTGTGGAACCAGGTAGTCCATCTCTCCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 72 bp | CACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATaGGACAAGCCGCTGTACCCGCTGAGCCATCTTACA | + |
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Preference number: 3 (lower is better) Translates to: HMGSADRWSSAL*DKPLYPLSHLT Trigger: TGTAAGATGGCTCAGCGGGTACAGCGGCTTGTCTCATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR GCA 72 bp | GGGCCAGACTCTGGTGGCTTCAGTTCCAGTAAGAGGTaGATTTACAGGAGATTCTGGGGACACAAGCACGTG | + |
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Preference number: 3 (lower is better) Translates to: GPDSGGFSSSKR*IYRRFWGHKHV Trigger: CACGTGCTTGTGTCCCCAGAATCTCCTGTAAATGCACCTCTTACTGGAACTGAAGCCACCAGAGTCTGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR GCA 72 bp | GAAAACGAGCGTTCAAGCAGGGTTTGTGTGTGTGCATaGGCACCATCAGATCTCTCAAACACCTGCCTGTGC | + |
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Preference number: 3 (lower is better) Translates to: ENERSSRVCVCA*APSDLSNTCLC Trigger: GCACAGGCAGGTGTTTGAGAGATCTGATGGTGCGCATGCACACACACAAACCCTGCTTGAACGCTCGTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR CCA 72 bp | TTCAGTTCCAGTAAGAGGTGCATTTACAGGAGATTCTaGGGACACAAGCACGTGGCAGCCTCTTCCTTCCGC | + |
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Preference number: 3 (lower is better) Translates to: FSSSKRCIYRRF*GHKHVAASSFR Trigger: GCGGAAGGAAGAGGCTGCCACGTGCTTGTGTCCCCAGAATCTCCTGTAAATGCACCTCTTACTGGAACTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR CCA 72 bp | CAGACAAACCACAAGCGCACCCTTGTACAGCAAGTTTaGCTTCCAGGGGTTCTTGACCATGTCTGGATGCCT | + |
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Preference number: 3 (lower is better) Translates to: QTNHKRTLVQQV*LPGVLDHVWMP Trigger: AGGCATCCAGACATGGTCAAGAACCCCTGGAAGCCAAACTTGCTGTACAAGGGTGCGCTTGTGGTTTGTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CAA 90 bp | AGGTCACTGTTCTTTGCACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATGTTTGAAGTCAGGCGTTaGAGGACCCAGTGCCCTTGT | + |
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Preference number: 3 (lower is better) Translates to: RSLFFAHGFCRQMELSLMFEVRR*RTQCPC Trigger: ACAAGGGCACTGGGTCCTCAAACGCCTGACTTCAAA...CATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGTGACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR CCA 72 bp | ACTAGGGTGGAATTTCTCCAGGGTGGAATTTTAGACTaGTACCAGAAGTCGGCAAGGCGTGACTGCTGGACA | + |
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Preference number: 3 (lower is better) Translates to: TRVEFLQGGILD*YQKSARRDCWT Trigger: TGTCCAGCAGTCACGCCTTGCCGACTTCTGGTACCAGTCTAAAATTCCACCCTGGAGAAATTCCACCCTAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR CCA 72 bp | CACACGATGTACGTGCAGGTCACTGTTCTTTGCACATaGGTTCTGCAGACAGATGGAGCTCAGCCTTATGAG | + |
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Preference number: 3 (lower is better) Translates to: HTMYVQVTVLCT*VLQTDGAQPYE Trigger: CTCATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGTGACCTGCACGTACATCGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 72 bp | GGAGCTCAGCCTTATGAGACAAGCCGCTGTACCCGCTaGGCCATCTTACACAGCTCAAAACAGAACAATTTA | + |
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Preference number: 3 (lower is better) Translates to: GAQPYETSRCTR*AILHSSKQNNL Trigger: TAAATTGTTCTGTTTTGAGCTGTGTAAGATGGCTCAGCGGGTACAGCGGCTTGTCTCATAAGGCTGAGCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CAA 90 bp | CAGGTCACTGTTCTTTGCACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATTGTCAACTGAGACACTaGACAACAGATCAGACTGAG | + |
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Preference number: 3 (lower is better) Translates to: QVTVLCTWVLQTDGAQPYCQLRH*TTDQTE Trigger: CTCAGTCTGATCTGTTGTCAAGTGTCTCAGTTGACA...ATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGTGACCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CAA 90 bp | TTCGAACTTTTTAGGATCCTTTGTGCTGGAGGAGAGCAAAGCAGGGCCTTATTAGCAGGTCACTGTTCTTaGCACATGGGTTCTGCAGAC | + |
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Preference number: 3 (lower is better) Translates to: FELFRILCAGGEQSRALLAGHCS*HMGSAD Trigger: GTCTGCAGAACCCATGTGCAAAGAACAGTGACCTGC...TAATAAGGCCCTGCTTTGCTCTCCTCCAGCACAAAGGATCCTAAAAAGTTCGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CAA 90 bp | CAGGTCACTGTTCTTTGCACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATAGAAAAGTAGTGGCTTaGGGGAACAGAACATACAGA | + |
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Preference number: 3 (lower is better) Translates to: QVTVLCTWVLQTDGAQPYRKVVA*GNRTYR Trigger: TCTGTATGTTCTGTTCCCCAAAGCCACTACTTTTCT...ATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGTGACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CAA 90 bp | TTCCTGAAATACAATGGTGGCTGCATCAGCCTTGTCCCACAATCACACTGTAATTTCCTCCCAACAGGCTaGCCTCCAAGAAAAGTAGTG | + |
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Preference number: 3 (lower is better) Translates to: FLKYNGGCISLVPQSHCNFLPTG*PPRKVV Trigger: CACTACTTTTCTTGGAGGCAAGCCTGTTGGGAGGAA...ATTACAGTGTGATTGTGGGACAAGGCTGATGCAGCCACCATTGTATTTCAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 72 bp | TGGAATTTTAGACTGGTACCAGAAGTCGGCAAGGCGTaGCTGCTGGACACATTAAGAGTCCCATGTAGACTT | + |
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Preference number: 3 (lower is better) Translates to: WNFRLVPEVGKA*LLDTLRVPCRL Trigger: AAGTCTACATGGGACTCTTAATGTGTCCAGCAGTCACGCCTTGCCGACTTCTGGTACCAGTCTAAAATTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CAA 90 bp | TTCCTGAAATACAATGGTGGCTGCATCAGCCTTGTCCCACAATCACACTGTAATTGGGATACTCGAGTGTaGGAAGCAGAGTATGTTGTG | + |
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Preference number: 3 (lower is better) Translates to: FLKYNGGCISLVPQSHCNWDTRV*EAEYVV Trigger: CACAACATACTCTGCTTCCAACACTCGAGTATCCCA...ATTACAGTGTGATTGTGGGACAAGGCTGATGCAGCCACCATTGTATTTCAGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR GCA 72 bp | TGTATTCCAAGTGCATTCCATGCCAAGCAAAGCACCTaGCATACTGAACTGAGAGAGCTACTGGATAAGAAG | + |
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Preference number: 3 (lower is better) Translates to: CIPSAFHAKQST*HTELRELLDKK Trigger: CTTCTTATCCAGTAGCTCTCTCAGTTCAGTATGGCAGGTGCTTTGCTTGGCATGGAATGCACTTGGAATACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR GCA 72 bp | GCAATGCTGAACTCAGATGCAAGGGCCGCTCGCTCATaGATCAGAACAATCAGAAACTTCCACTTATTCATT | + |
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Preference number: 3 (lower is better) Translates to: AMLNSDARAARS*IRTIRNFHLFI Trigger: AATGAATAAGTGGAAGTTTCTGATTGTTCTGATGCATGAGCGAGCGGCCCTTGCATCTGAGTTCAGCATTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CAA 90 bp | TTCGAACTTTTTAGGATCCTTTGTGCTGGAGGAGAGCAAAGCAGGGCCTTATTACTTTGTTACATGCTGTaGTCCTGGGCATTAACCTCT | + |
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Preference number: 3 (lower is better) Translates to: FELFRILCAGGEQSRALLLCYML*SWALTS Trigger: AGAGGTTAATGCCCAGGACAACAGCATGTAACAAAG...TAATAAGGCCCTGCTTTGCTCTCCTCCAGCACAAAGGATCCTAAAAAGTTCGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CAA 90 bp | TTCGAACTTTTTAGGATCCTTTGTGCTGGAGGAGAGCAAAGCAGGGCCTTATTATCAATGCCAGCAGTGTaGATATGTGAGGTCTATCAT | + |
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Preference number: 3 (lower is better) Translates to: FELFRILCAGGEQSRALLSMPAV*ICEVYH Trigger: ATGATAGACCTCACATATCAACACTGCTGGCATTGA...TAATAAGGCCCTGCTTTGCTCTCCTCCAGCACAAAGGATCCTAAAAAGTTCGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR CCA 72 bp | CCACTCCTCATTCAAAAGGACTTTGGATTTTCACTGTaGCCTCTGATGTTTCATGACTGCAATCCTTATGTG | + |
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Preference number: 3 (lower is better) Translates to: PLLIQKDFGFSL*PLMFHDCNPYV Trigger: CACATAAGGATTGCAGTCATGAAACATCAGAGGCCACAGTGAAAATCCAAAGTCCTTTTGAATGAGGAGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR-3UTR CAA 90 bp | AAGAAGTCCCTCGAGTTATTCGACTCAACTTTACAAATCAAACACTCGAAGGAGTGTCAACTGAGACACTaGACAACAGATCAGACTGAG | + |
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Preference number: 3 (lower is better) Translates to: KKSLELFDSTLQIKHSKECQLRH*TTDQTE Trigger: CTCAGTCTGATCTGTTGTCAAGTGTCTCAGTTGACA...CTCCTTCGAGTGTTTGATTTGTAAAGTTGAGTCGAATAACTCGAGGGACTTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR-3UTR CAA 90 bp | ATCAGATCTCTCAAACACCTGCCTGTGCTAAGCATCTGTAAAAATAAACTAGTAAGTGGTTCTCAAGGGTaGTTATGCAGAGCCCTACAG | + |
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Preference number: 3 (lower is better) Translates to: IRSLKHLPVLSICKNKLVSGSQG*LCRALQ Trigger: CTGTAGGGCTCTGCATAACAACCCTTGAGAACCACT...TACTAGTTTATTTTTACAGATGCTTAGCACAGGCAGGTGTTTGAGAGATCTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR GCA 72 bp | ACGTACATGTTTTTATTCCTGAAATACAATGGTGGCTaGATCAGCCTTGTCCCACAATCACACTGTAATTAC | + |
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Preference number: 3 (lower is better) Translates to: TYMFLFLKYNGG*ISLVPQSHCNY Trigger: GTAATTACAGTGTGATTGTGGGACAAGGCTGATGCAGCCACCATTGTATTTCAGGAATAAAAACATGTACGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 72 bp | GAGTCCCATGTAGACTTTGCCAAACTTATTAAACAATaGCAGTCACTTGAGTCAAGGAACTTTACACACACA | + |
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Preference number: 3 (lower is better) Translates to: ESHVDFAKLIKQ*QSLESRNFTHT Trigger: TGTGTGTGTAAAGTTCCTTGACTCAAGTGACTGTCATTGTTTAATAAGTTTGGCAAAGTCTACATGGGACTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR TCA 72 bp | TCATTCAAAAGGACTTTGGATTTTCACTGTGGCCTCTaGTGTTTCATGACTGCAATCCTTATGTGGATTCTT | + |
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Preference number: 3 (lower is better) Translates to: SFKRTLDFHCGL*CFMTAILMWIL Trigger: AAGAATCCACATAAGGATTGCAGTCATGAAACATCAGAGGCCACAGTGAAAATCCAAAGTCCTTTTGAATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| CDS-3UTR GCA 90 bp | TTACAGGAGATTCTGGGGACACAAGCACGTGGCAGCCTCTTCCTTCCGCAGTTCTCCTGGCTGTGCGGTTaGCCTTCTCCACTATCCCAA | + |
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Preference number: 4 (lower is better) Translates to: LQEILGTQARGSLFLPQFSWLCG*PSPLSQ Trigger: TTGGGATAGTGGAGAAGGGCAACCGCACAGCCAGGA...GAACTGCGGAAGGAAGAGGCTGCCACGTGCTTGTGTCCCCAGAATCTCCTGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| CDS-3UTR TCA 90 bp | AGCACCTGCCATACTGAACTGAGAGAGCTACTGGATAAGAAGTCCCTCGAGTTATCCGAGGCTTGTCGATaGTCCTGGCTGTGCGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: STCHTELRELLDKKSLELSEACR*SWLCGC Trigger: GCAACCGCACAGCCAGGATCATCGACAAGCCTCGGA...TAACTCGAGGGACTTCTTATCCAGTAGCTCTCTCAGTTCAGTATGGCAGGTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR CAA 72 bp | GCACCCTTGTACAGCAAGTTTGGCTTCCAGGGGTTCTaGACCATGTCTGGATGCCTAGAGATGCTGCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: APLYSKFGFQGF*TMSGCLEMLPV Trigger: AACAGGCAGCATCTCTAGGCATCCAGACATGGTCAAGAACCCCTGGAAGCCAAACTTGCTGTACAAGGGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR CAA 72 bp | TTGTGCTGGAGGAGAGCAAAGCAGGGCCTTATTAGGTaGCCCAGGCAGACTTTGAACGAGGTCCTCTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: LCWRRAKQGLIR*PRQTLNEVLLL Trigger: AAGCAAGAGGACCTCGTTCAAAGTCTGCCTGGGCAACCTAATAAGGCCCTGCTTTGCTCTCCTCCAGCACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| CDS-3UTR GCA 90 bp | AGCACCTGCCATACTGAACTGAGAGAGCTACTGGATAAGAAGTCCCTCGAGTTATCCTGGCTGTGCGGTTaGCCTTCTCCACTATCCCAA | + |
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Preference number: 4 (lower is better) Translates to: STCHTELRELLDKKSLELSWLCG*PSPLSQ Trigger: TTGGGATAGTGGAGAAGGGCAACCGCACAGCCAGGA...TAACTCGAGGGACTTCTTATCCAGTAGCTCTCTCAGTTCAGTATGGCAGGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR CAA 72 bp | TCTCAAGGGTTGTTATGCAGAGCCCTACAGGGTACATaGGAGAGATGGACTACCTGGTTCCACAGCCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: SQGLLCRALQGT*ERWTTWFHSQN Trigger: GTTCTGGCTGTGGAACCAGGTAGTCCATCTCTCCAATGTACCCTGTAGGGCTCTGCATAACAACCCTTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| 3UTR CAA 72 bp | CAATACTCACTCACCAGACAAACCACAAGCGCACCCTaGTACAGCAAGTTTGGCTTCCAGGGGTTCTTGACC | + |
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Preference number: 4 (lower is better) Translates to: QYSLTRQTTSAP*YSKFGFQGFLT Trigger: GGTCAAGAACCCCTGGAAGCCAAACTTGCTGTACAAGGGTGCGCTTGTGGTTTGTCTGGTGAGTGAGTATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| CDS-3UTR TCA 90 bp | AAGAAGTCCCTCGAGTTATTCGACTCAACTTTACAAATCAAACACTCGAAGGAGTCCGAGGCTTGTCGATaGTCCTGGCTGTGCGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: KKSLELFDSTLQIKHSKESEACR*SWLCGC Trigger: GCAACCGCACAGCCAGGATCATCGACAAGCCTCGGA...CTCCTTCGAGTGTTTGATTTGTAAAGTTGAGTCGAATAACTCGAGGGACTTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| CDS-3UTR CCA 90 bp | CAGGTCACTGTTCTTTGCACATGGGTTCTGCAGACAGATGGAGCTCAGCCTTATGGTTCACGTTTTGTGTaGCTACTTGAGGTGCGACTT | + |
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Preference number: 4 (lower is better) Translates to: QVTVLCTWVLQTDGAQPYGSRFV*LLEVRL Trigger: AAGTCGCACCTCAAGTAGCCACACAAAACGTGAACC...ATAAGGCTGAGCTCCATCTGTCTGCAGAACCCATGTGCAAAGAACAGTGACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| CDS-3UTR GCA 90 bp | AAGATTAGTGGTTCTCAAGGGTTGTTATGCAGAGCCCTACAGGGTACATTGGAGCATTGCCTCTTGGTATaGCAACTCTACGTCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: KISGSQGLLCRALQGTLEHCLLV*QLYVFL Trigger: CAAGAAGACGTAGAGTTGGCATACCAAGAGGCAATG...CTCCAATGTACCCTGTAGGGCTCTGCATAACAACCCTTGAGAACCACTAATCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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| CDS-3UTR CCA 90 bp | CGGGGAGACCATCATGTCACTTACCATTCTGTCTTTCTAGAATGTCAACTGAGAGGTTCACGTTTTGTGTaGCTACTTGAGGTGCGACTT | + |
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Preference number: 4 (lower is better) Translates to: RGDHHVTYHSVFLECQLRGSRFV*LLEVRL Trigger: AAGTCGCACCTCAAGTAGCCACACAAAACGTGAACC...TCTCAGTTGACATTCTAGAAAGACAGAATGGTAAGTGACATGATGGTCTCCCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| CDS-3UTR GCA 90 bp | CGGGGAGACCATCATGTCACTTACCATTCTGTCTTTCTAGAATGTCAACTGAGACATTGCCTCTTGGTATaGCAACTCTACGTCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: RGDHHVTYHSVFLECQLRHCLLV*QLYVFL Trigger: CAAGAAGACGTAGAGTTGGCATACCAAGAGGCAATG...TCTCAGTTGACATTCTAGAAAGACAGAATGGTAAGTGACATGATGGTCTCCCCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027973.14 ENSMUST00000115019.2 |
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| 3UTR CAA 72 bp | CCCAACATTCCTTTTAAGATTAGTGGTTCTCAAGGGTaGTTATGCAGAGCCCTACAGGGTACATTGGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: PNIPFKISGSQG*LCRALQGTLER Trigger: TCTCTCCAATGTACCCTGTAGGGCTCTGCATAACAACCCTTGAGAACCACTAATCTTAAAAGGAATGTTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027973.14 |
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