RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SEMA7A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038264

Ensembl transcript IDs: ENSMUST00000043059.9, ENSMUST00000214314.2

Found 156 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACAGAGGAGCAGCCCGGGTCTGCAGGGACACTGGCCACCCAGCAGTaGAACAGGGAAGGACGCAAAGGACTCAGCCCCAAGGTCCAGAGA +
Preference number: 1 (lower is better)
Translates to: TEEQPGSAGTLATQQ*NREGRKGLSPKVQR
Trigger: TCTCTGGACCTTGGGGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTGCAGACCCGGGCTGCTCCTCTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR TCA 90 bp CCAGGCCCTGCCCCAGACACAGCTGGAGAAGGGTCAGCTCTCTGCTaGAATCTATGGACTGTGGGCTGGGAGGCCCACTTGGGAAGCTCG +
Preference number: 1 (lower is better)
Translates to: PGPAPDTAGEGSALC*NLWTVGWEAHLGSS
Trigger: CGAGCTTCCCAAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCTCCAGCTGTGTCTGGGGCAGGGCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 90 bp GACGTCTCCAGGCCCTTTGTCCCCCACTGGATTATTCAGTACCCCTaGAAGAATCAGTGGACAGGGAGCTTCCGGGCCGGCCGGCTGAGT +
Preference number: 1 (lower is better)
Translates to: DVSRPFVPHWIIQYP*KNQWTGSFRAGRLS
Trigger: ACTCAGCCGGCCGGCCCGGAAGCTCCCTGTCCACTGATTCTTCCAGGGGTACTGAATAATCCAGTGGGGGACAAAGGGCCTGGAGACGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 90 bp ACACAGCTGGAGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTaGGCTGGGAGGCCCACTTGGGAAGCTCGGCCTGGGCCATCTCCA +
Preference number: 1 (lower is better)
Translates to: TQLEKGQLSAEIYGL*AGRPTWEARPGPSP
Trigger: TGGAGATGGCCCAGGCCGAGCTTCCCAAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCTCCAGCTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 90 bp AGCAGCCGCCTGCGGCTAGACGTCTCCAGGCCCTTTGTCCCCCACTaGATTATTCAGTACCCCTGGAAGAATCAGTGGACAGGGAGCTTC +
Preference number: 1 (lower is better)
Translates to: SSRLRLDVSRPFVPH*IIQYPWKNQWTGSF
Trigger: GAAGCTCCCTGTCCACTGATTCTTCCAGGGGTACTGAATAATCCAGTGGGGGACAAAGGGCCTGGAGACGTCTAGCCGCAGGCGGCTGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 90 bp CCGGAAAGCAAACATCCTTCAATAAACATGCAAGGCGCTGTCCGGTaGGACCCAGGCTGTGAGGGAGGTACAGAGGAGCAGCCCGGGTCT +
Preference number: 1 (lower is better)
Translates to: PESKHPSINMQGAVR*DPGCEGGTEEQPGS
Trigger: AGACCCGGGCTGCTCCTCTGTACCTCCCTCACAGCCTGGGTCCCACCGGACAGCGCCTTGCATGTTTATTGAAGGATGTTTGCTTTCCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 90 bp CCCTTTGTCCCCCACTGGATTATTCAGTACCCCTGGAAGAATCAGTaGACAGGGAGCTTCCGGGCCGGCCGGCTGAGTGTGACATTATTC +
Preference number: 1 (lower is better)
Translates to: PFVPHWIIQYPWKNQ*TGSFRAGRLSVTLF
Trigger: GAATAATGTCACACTCAGCCGGCCGGCCCGGAAGCTCCCTGTCCACTGATTCTTCCAGGGGTACTGAATAATCCAGTGGGGGACAAAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 90 bp CAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTaGGAAGCTCGGCCTGGGCCATCTCCACGGGAATTTTCACAGTTT +
Preference number: 1 (lower is better)
Translates to: QLSAEIYGLWAGRPT*EARPGPSPREFSQF
Trigger: AAACTGTGAAAATTCCCGTGGAGATGGCCCAGGCCGAGCTTCCCAAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR TCA 90 bp GAGCAGCCCGGGTCTGCAGGGACACTGGCCACCCAGCAGTGGAACAGGGAAGGAAGCCCACTGCCAGGCTaGTGGGCTCTCAGGCCAGGT +
Preference number: 2 (lower is better)
Translates to: EQPGSAGTLATQQWNREGSPLPG*WALRPG
Trigger: ACCTGGCCTGAGAGCCCATCAGCCTGGCAGTGGGCT...TCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTGCAGACCCGGGCTGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR CCA 90 bp CAGGGACACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACTCAGCCCCCTGGAAGAATCAGTaGACAGGGAGCTTCCGGGCC +
Preference number: 2 (lower is better)
Translates to: QGHWPPSSGTGKDAKDSAPWKNQ*TGSFRA
Trigger: GGCCCGGAAGCTCCCTGTCCACTGATTCTTCCAGGG...GGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR CCA 90 bp AGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTGGGAAGCTCCTCATGCCCTCAGACTaGGCTCCCAGGGCAGAGCCA +
Preference number: 2 (lower is better)
Translates to: SSLLKSMDCGLGGPLGKLLMPSD*APRAEP
Trigger: TGGCTCTGCCCTGGGAGCCCAGTCTGAGGGCATGAG...GAGCTTCCCAAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR CCA 90 bp AGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTGGGAAGCTCCTGGCCACCCAGCAGTaGAACAGGGAAGGACGCAAA +
Preference number: 2 (lower is better)
Translates to: SSLLKSMDCGLGGPLGKLLATQQ*NREGRK
Trigger: TTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAG...GAGCTTCCCAAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR CCA 90 bp AGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTGGTCTGCAGGGACACTaGCCACCCAGCAGTGGAACA +
Preference number: 2 (lower is better)
Translates to: RRVSSLLKSMDCGLGGPLGLQGH*PPSSGT
Trigger: TGTTCCACTGCTGGGTGGCCAGTGTCCCTGCAGACC...AAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR CCA 90 bp AGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTTGGAACCTCCCCCTGTaGACCCGGCTCCTCCTTCAA +
Preference number: 2 (lower is better)
Translates to: RRVSSLLKSMDCGLGGPLWNLPL*TRLLLQ
Trigger: TTGAAGGAGGAGCCGGGTCCACAGGGGGAGGTTCCA...AAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR GCA 90 bp CCACTCTCGTCAAACCCATGCCTGTCCCTGGACTCTGATCCTATCCCAGGGAGCGGCCAGGTGCATCACTaGATGAAGTCAAGTGTGAGA +
Preference number: 2 (lower is better)
Translates to: PLSSNPCLSLDSDPIPGSGQVHH*MKSSVR
Trigger: TCTCACACTTGACTTCATGCAGTGATGCACCTGGCC...GCTCCCTGGGATAGGATCAGAGTCCAGGGACAGGCATGGGTTTGACGAGAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR CCA 90 bp CAGACTGGGCTCCCAGGGCAGAGCCAGCTCATGCCACTCTCGTCAAACCCATGCATTATTCAGTACCCCTaGAAGAATCAGTGGACAGGG +
Preference number: 2 (lower is better)
Translates to: QTGLPGQSQLMPLSSNPCIIQYP*KNQWTG
Trigger: CCCTGTCCACTGATTCTTCCAGGGGTACTGAATAAT...GCATGGGTTTGACGAGAGTGGCATGAGCTGGCTCTGCCCTGGGAGCCCAGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR CCA 90 bp AGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTCCCTTTGTCCCCCACTaGATTATTCAGTACCCCTGG +
Preference number: 2 (lower is better)
Translates to: RRVSSLLKSMDCGLGGPLPFVPH*IIQYPW
Trigger: CCAGGGGTACTGAATAATCCAGTGGGGGACAAAGGG...AAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR CCA 90 bp GGCTCCTCCTTCAAAATGACCACGGCAAATCAACCTAGGGCTCAGTTTTCTTCTCCCAAGGTCCAGAGATaGGGGGTCCCAGCTCCCCTT +
Preference number: 2 (lower is better)
Translates to: GSSFKMTTANQPRAQFSSPKVQR*GVPAPL
Trigger: AAGGGGAGCTGGGACCCCCCATCTCTGGACCTTGGG...AGAAGAAAACTGAGCCCTAGGTTGATTTGCCGTGGTCATTTTGAAGGAGGAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR GCA 90 bp GGCTCCTCCTTCAAAATGACCACGGCAAATCAACCTAGGGCTCAGTTTTCTTCTCACACTGGAGGCTCATaGCCTCAGACTGGGCTCCCA +
Preference number: 2 (lower is better)
Translates to: GSSFKMTTANQPRAQFSSHTGGS*PQTGLP
Trigger: TGGGAGCCCAGTCTGAGGGCATGAGCCTCCAGTGTG...AGAAGAAAACTGAGCCCTAGGTTGATTTGCCGTGGTCATTTTGAAGGAGGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR-3UTR TCA 90 bp AGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTGAGAAGATAAAGTCTTaGGTTGCTGATGGCCCAGCT +
Preference number: 2 (lower is better)
Translates to: RRVSSLLKSMDCGLGGPLEKIKS*VADGPA
Trigger: AGCTGGGCCATCAGCAACTCAAGACTTTATCTTCTC...AAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 72 bp CAGCCCGGGTCTGCAGGGACACTGGCCACCCAGCAGTaGAACAGGGAAGGACGCAAAGGACTCAGCCCCAAG +
Preference number: 3 (lower is better)
Translates to: QPGSAGTLATQQ*NREGRKGLSPK
Trigger: CTTGGGGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTGCAGACCCGGGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR GCA 72 bp GGGCAGAGCCAGCTCATGCCACTCTCGTCAAACCCATaGCTGTCCCTGGACTCTGATCCTATCCCAGGGAGC +
Preference number: 3 (lower is better)
Translates to: GQSQLMPLSSNP*LSLDSDPIPGS
Trigger: GCTCCCTGGGATAGGATCAGAGTCCAGGGACAGGCATGGGTTTGACGAGAGTGGCATGAGCTGGCTCTGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 72 bp AGGCCCTTTGTCCCCCACTGGATTATTCAGTACCCCTaGAAGAATCAGTGGACAGGGAGCTTCCGGGCCGGC +
Preference number: 3 (lower is better)
Translates to: RPFVPHWIIQYP*KNQWTGSFRAG
Trigger: GCCGGCCCGGAAGCTCCCTGTCCACTGATTCTTCCAGGGGTACTGAATAATCCAGTGGGGGACAAAGGGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 72 bp GCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTaGGAAGCTCGGCCTGGGCCATCTCCACGGGAATTT +
Preference number: 3 (lower is better)
Translates to: AEIYGLWAGRPT*EARPGPSPREF
Trigger: AAATTCCCGTGGAGATGGCCCAGGCCGAGCTTCCCAAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 72 bp ACAATGCCAAGGGCAGAGTCCTGGAACCTCCCCCTGTaGACCCGGCTCCTCCTTCAAAATGACCACGGCAAA +
Preference number: 3 (lower is better)
Translates to: TMPRAESWNLPL*TRLLLQNDHGK
Trigger: TTTGCCGTGGTCATTTTGAAGGAGGAGCCGGGTCCACAGGGGGAGGTTCCAGGACTCTGCCCTTGGCATTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR CCA 72 bp CTGCGGCTAGACGTCTCCAGGCCCTTTGTCCCCCACTaGATTATTCAGTACCCCTGGAAGAATCAGTGGACA +
Preference number: 3 (lower is better)
Translates to: LRLDVSRPFVPH*IIQYPWKNQWT
Trigger: TGTCCACTGATTCTTCCAGGGGTACTGAATAATCCAGTGGGGGACAAAGGGCCTGGAGACGTCTAGCCGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
3UTR TCA 72 bp CGGGCTGAAGGGGGCATAGCCTTTCATCTCACCAAGTaGCATCACCACACTGTCATTCACCAAGTTCCAGCA +
Preference number: 3 (lower is better)
Translates to: RAEGGIAFHLTK*HHHTVIHQVPA
Trigger: TGCTGGAACTTGGTGAATGACAGTGTGGTGATGTCACTTGGTGAGATGAAAGGCTATGCCCCCTTCAGCCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214314.2
CDS-3UTR TCA 90 bp CAGACTGGGCTCCCAGGGCAGAGCCAGCTCATGCCACTCTCGTCAAACCCATGCAGGGGTCTCGGGACATaGGGCAGCCATGGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: QTGLPGQSQLMPLSSNPCRGLGT*GSHGSP
Trigger: GGGGCTGCCATGGCTGCCTCATGTCCCGAGACCCCT...GCATGGGTTTGACGAGAGTGGCATGAGCTGGCTCTGCCCTGGGAGCCCAGTCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp CTGATGGCCCAGCTTCACAGTCGGCGCCTTCCTTCTATAGTCCCTCACTGTCCCGGTCCGCTCCTCGAGTaGCCTTGGGCGGAGGCGGCG +
Preference number: 4 (lower is better)
Translates to: LMAQLHSRRLPSIVPHCPGPLLE*PWAEAA
Trigger: CGCCGCCTCCGCCCAAGGCCACTCGAGGAGCGGACC...GGGACAGTGAGGGACTATAGAAGGAAGGCGCCGACTGTGAAGCTGGGCCATCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp GAGCAGCCCGGGTCTGCAGGGACACTGGCCACCCAGCAGTGGAACAGGGAAGGAGGCGCCATAAGTAAGTaGCGTGGCGGGACTCCATGG +
Preference number: 4 (lower is better)
Translates to: EQPGSAGTLATQQWNREGGAISK*RGGTPW
Trigger: CCATGGAGTCCCGCCACGCCACTTACTTATGGCGCC...TCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTGCAGACCCGGGCTGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp ACATCACCACACTGTCATTCACCAAGTTCCAGCAGCTGGGCTTCCGGGCATTGGCTCCTCGAGTGGCCTTaGGCGGAGGCGGCGGCCACC +
Preference number: 4 (lower is better)
Translates to: TSPHCHSPSSSSWASGHWLLEWP*AEAAAT
Trigger: GGTGGCCGCCGCCTCCGCCCAAGGCCACTCGAGGAG...CCAATGCCCGGAAGCCCAGCTGCTGGAACTTGGTGAATGACAGTGTGGTGATGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214314.2
CDS-3UTR CCA 90 bp CGGCGCCTTCCTTCTATAGTCCCTCACTGTCCCTACCCCACCTGGGCCCCAGCATGCCAGGTCGAGGGTTaGGAAGGCCCATGTGGTAGC +
Preference number: 4 (lower is better)
Translates to: RRLPSIVPHCPYPTWAPACQVEG*EGPCGS
Trigger: GCTACCACATGGGCCTTCCCAACCCTCGACCTGGCA...TGCTGGGGCCCAGGTGGGGTAGGGACAGTGAGGGACTATAGAAGGAAGGCGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR TCA 90 bp CGGCGCCTTCCTTCTATAGTCCCTCACTGTCCCTACCCCACCTGGGCCCCAGCATGCCCTCGGGGAAGTTaGAGTGGTAGACCTTGCCAC +
Preference number: 4 (lower is better)
Translates to: RRLPSIVPHCPYPTWAPACPRGS*SGRPCH
Trigger: GTGGCAAGGTCTACCACTTCAACTTCCCCGAGGGCA...TGCTGGGGCCCAGGTGGGGTAGGGACAGTGAGGGACTATAGAAGGAAGGCGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp TTTCCCGCCCTTCCGTCCGGAAAGCAAACATCCTTCAATAAACATGCAAGGCGCCTCCTCGAGTGGCCTTaGGCGGAGGCGGCGGCCACC +
Preference number: 4 (lower is better)
Translates to: FPALPSGKQTSFNKHARRLLEWP*AEAAAT
Trigger: GGTGGCCGCCGCCTCCGCCCAAGGCCACTCGAGGAG...GCGCCTTGCATGTTTATTGAAGGATGTTTGCTTTCCGGACGGAAGGGCGGGAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR GCA 90 bp GACATCACCACACTGTCATTCACCAAGTTCCAGCAGCTGGGCTTCCGGGCATTGTCCAGACGGCGGAGATaGGGGGTCCGCTCCTCGAGT +
Preference number: 4 (lower is better)
Translates to: DITTLSFTKFQQLGFRALSRRRR*GVRSSS
Trigger: ACTCGAGGAGCGGACCCCGCATCTCCGCCGTCTGGA...CAATGCCCGGAAGCCCAGCTGCTGGAACTTGGTGAATGACAGTGTGGTGATGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214314.2
CDS-3UTR GCA 90 bp CAGGGACACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACTCAGCCGCCAGGGAAACCTTCTaGAATGGAGCCTCGTCTGGT +
Preference number: 4 (lower is better)
Translates to: QGHWPPSSGTGKDAKDSAARETF*NGASSG
Trigger: ACCAGACGAGGCTCCATTGCAGAAGGTTTCCCTGGC...GGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp CTGATGGCCCAGCTTCACAGTCGGCGCCTTCCTTCTATAGTCCCTCACTGTCCCCCAAGTTCCAGCAGCTaGGCTTCCGGGCATTGGTGC +
Preference number: 4 (lower is better)
Translates to: LMAQLHSRRLPSIVPHCPPSSSS*ASGHWC
Trigger: GCACCAATGCCCGGAAGCCCAGCTGCTGGAACTTGG...GGGACAGTGAGGGACTATAGAAGGAAGGCGCCGACTGTGAAGCTGGGCCATCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp ACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACTCAGCCCCAAGGTATGTCCAGGGGTACCTaGCTCACTTCCCACTGGGAG +
Preference number: 4 (lower is better)
Translates to: TGHPAVEQGRTQRTQPQGMSRGT*LTSHWE
Trigger: CTCCCAGTGGGAAGTGAGCCAGGTACCCCTGGACAT...ACCTTGGGGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp GCAGAGTCCTGGAACCTCCCCCTGTGGACCCGGCTCCTCCTTCAAAATGACCACCAGCTAGGGCTTTGGTaGCCTGGCTCACAGCTCTGT +
Preference number: 4 (lower is better)
Translates to: AESWNLPLWTRLLLQNDHQLGLW*PGSQLC
Trigger: ACAGAGCTGTGAGCCAGGCCACCAAAGCCCTAGCTG...GTGGTCATTTTGAAGGAGGAGCCGGGTCCACAGGGGGAGGTTCCAGGACTCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp GCAGAGTCCTGGAACCTCCCCCTGTGGACCCGGCTCCTCCTTCAAAATGACCACCAGTGCTCTGTCCTCTaGCAGCAGCTCCCAGTGTTG +
Preference number: 4 (lower is better)
Translates to: AESWNLPLWTRLLLQNDHQCSVL*QQLPVL
Trigger: CAACACTGGGAGCTGCTGCCAGAGGACAGAGCACTG...GTGGTCATTTTGAAGGAGGAGCCGGGTCCACAGGGGGAGGTTCCAGGACTCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR GCA 90 bp CAAATCAACCTAGGGCTCAGTTTTCTTCTTCGCTCTCCCCTGTCTCCCTCACCCTCCAGACGGCGGAGATaGGGGGTCCGCTCCTCGAGT +
Preference number: 4 (lower is better)
Translates to: QINLGLSFLLRSPLSPSPSRRRR*GVRSSS
Trigger: ACTCGAGGAGCGGACCCCGCATCTCCGCCGTCTGGA...GGGTGAGGGAGACAGGGGAGAGCGAAGAAGAAAACTGAGCCCTAGGTTGATTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp AGCCTTTCATCTCACCAAGTGACATCACCACACTGTCATTCACCAAGTTCCAGCGGTCCGCTCCTCGAGTaGCCTTGGGCGGAGGCGGCG +
Preference number: 4 (lower is better)
Translates to: SLSSHQVTSPHCHSPSSSGPLLE*PWAEAA
Trigger: CGCCGCCTCCGCCCAAGGCCACTCGAGGAGCGGACC...GCTGGAACTTGGTGAATGACAGTGTGGTGATGTCACTTGGTGAGATGAAAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214314.2
CDS-3UTR CCA 90 bp GGTCTGCAGGGACACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACCGCTGCAGACCAACATaGCTTTCAGGAAGGTGTTCC +
Preference number: 4 (lower is better)
Translates to: GLQGHWPPSSGTGKDAKDRCRPT*LSGRCS
Trigger: GGAACACCTTCCTGAAAGCCATGTTGGTCTGCAGCG...GTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTGCAGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp AGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTGGGAAGCTCCTCTCCACTGGCCACTaGGGTCAGGGAGCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: SSLLKSMDCGLGGPLGKLLSTGH*GQGAGR
Trigger: TCTTCCTGCTCCCTGACCCCAGTGGCCAGTGGAGAG...GAGCTTCCCAAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp CCACTCTCGTCAAACCCATGCCTGTCCCTGGACTCTGATCCTATCCCAGGGAGCATGCAGCTAGGGCTTTaGTGGCCTGGCTCACAGCTC +
Preference number: 4 (lower is better)
Translates to: PLSSNPCLSLDSDPIPGSMQLGL*WPGSQL
Trigger: GAGCTGTGAGCCAGGCCACCAAAGCCCTAGCTGCAT...GCTCCCTGGGATAGGATCAGAGTCCAGGGACAGGCATGGGTTTGACGAGAGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR TCA 90 bp CCACTCTCGTCAAACCCATGCCTGTCCCTGGACTCTGATCCTATCCCAGGGAGCGATTCCACCACCTTGTaGATGGTGCCCCTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: PLSSNPCLSLDSDPIPGSDSTTL*MVPLSV
Trigger: CACAGACAGGGGCACCATTCACAAGGTGGTGGAATC...GCTCCCTGGGATAGGATCAGAGTCCAGGGACAGGCATGGGTTTGACGAGAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR TCA 90 bp CACAGCTGGAGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGACCAGCAGACCAAGTATaGGTGTGGGCAGGACCCCCA +
Preference number: 4 (lower is better)
Translates to: HSWRRVSSLLKSMDCGLGPADQV*VWAGPP
Trigger: TGGGGGTCCTGCCCACACTCATACTTGGTCTGCTGG...TCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCTCCAGCTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp GCAGAGTCCTGGAACCTCCCCCTGTGGACCCGGCTCCTCCTTCAAAATGACCACGAAAAGCACGGTGTGTaGCTCAGGCTGGCTAAAGTC +
Preference number: 4 (lower is better)
Translates to: AESWNLPLWTRLLLQNDHEKHGV*LRLAKV
Trigger: GACTTTAGCCAGCCTGAGCCACACACCGTGCTTTTC...GTGGTCATTTTGAAGGAGGAGCCGGGTCCACAGGGGGAGGTTCCAGGACTCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp TGCAGGGACACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACTCAGAGGTCTCTCCATTGCTaGCTTGCATGCGGTGAACGA +
Preference number: 4 (lower is better)
Translates to: CRDTGHPAVEQGRTQRTQRSLHC*LACGER
Trigger: TCGTTCACCGCATGCAAGCCAGCAATGGAGAGACCT...CTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp AGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTGGGAAGCTCAGGGCTTTGGTGGCCTaGCTCACAGCTCTGTTCCAC +
Preference number: 4 (lower is better)
Translates to: SSLLKSMDCGLGGPLGKLRALVA*LTALFH
Trigger: GTGGAACAGAGCTGTGAGCCAGGCCACCAAAGCCCT...GAGCTTCCCAAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR GCA 90 bp CTGATGGCCCAGCTTCACAGTCGGCGCCTTCCTTCTATAGTCCCTCACTGTCCCTGGTGGCTGCATCGCTaGAGACCAACATGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: LMAQLHSRRLPSIVPHCPWWLHR*RPTWLS
Trigger: TGAAAGCCATGTTGGTCTGCAGCGATGCAGCCACCA...GGGACAGTGAGGGACTATAGAAGGAAGGCGCCGACTGTGAAGCTGGGCCATCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR GCA 90 bp CACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACTCAGCCCCAAGGAGCAGGAAGACATCTTaGAGCCGATTGAAGTTCCTG +
Preference number: 4 (lower is better)
Translates to: HWPPSSGTGKDAKDSAPRSRKTS*SRLKFL
Trigger: CAGGAACTTCAATCGGCTGCAAGATGTCTTCCTGCT...CCTTGGGGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp CACAGCTGGAGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGACAGGACCCCTTTGTaGAGCCGATGTTCACCGTGC +
Preference number: 4 (lower is better)
Translates to: HSWRRVSSLLKSMDCGLGDRTPL*SRCSPC
Trigger: GCACGGTGAACATCGGCTCCACAAAGGGGTCCTGTC...TCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCTCCAGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp CAGGGACACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACTCAGCCGGAAGGTGTTCCACTTaGAGACAGACAACGAACTCT +
Preference number: 4 (lower is better)
Translates to: QGHWPPSSGTGKDAKDSAGRCST*RQTTNS
Trigger: AGAGTTCGTTGTCTGTCTCCAAGTGGAACACCTTCC...GGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp CCACTCTCGTCAAACCCATGCCTGTCCCTGGACTCTGATCCTATCCCAGGGAGCCAATGGAGCCTCGTCTaGTTTAGGGTTGGGACACTC +
Preference number: 4 (lower is better)
Translates to: PLSSNPCLSLDSDPIPGSQWSLV*FRVGTL
Trigger: GAGTGTCCCAACCCTAAACCAGACGAGGCTCCATTG...GCTCCCTGGGATAGGATCAGAGTCCAGGGACAGGCATGGGTTTGACGAGAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR GCA 90 bp CCACTCTCGTCAAACCCATGCCTGTCCCTGGACTCTGATCCTATCCCAGGGAGCCATTGCTGGCTTGCATaGGGTGAACGACCACTTTCT +
Preference number: 4 (lower is better)
Translates to: PLSSNPCLSLDSDPIPGSHCWLA*GERPLS
Trigger: AGAAAGTGGTCGTTCACCGCATGCAAGCCAGCAATG...GCTCCCTGGGATAGGATCAGAGTCCAGGGACAGGCATGGGTTTGACGAGAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp CTGATGGCCCAGCTTCACAGTCGGCGCCTTCCTTCTATAGTCCCTCACTGTCCCAGTAGTTCCAGGGGTTaGAGAAAACGCCATAGACCC +
Preference number: 4 (lower is better)
Translates to: LMAQLHSRRLPSIVPHCPSSSRG*RKRHRP
Trigger: GGGTCTATGGCGTTTTCTCCAACCCCTGGAACTACT...GGGACAGTGAGGGACTATAGAAGGAAGGCGCCGACTGTGAAGCTGGGCCATCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp GCAGAGTCCTGGAACCTCCCCCTGTGGACCCGGCTCCTCCTTCAAAATGACCACTTGAAGACAAAGCTATaGTCCTGGTCCCCTGATTCC +
Preference number: 4 (lower is better)
Translates to: AESWNLPLWTRLLLQNDHLKTKL*SWSPDS
Trigger: GGAATCAGGGGACCAGGACCATAGCTTTGTCTTCAA...GTGGTCATTTTGAAGGAGGAGCCGGGTCCACAGGGGGAGGTTCCAGGACTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp TTTCCCGCCCTTCCGTCCGGAAAGCAAACATCCTTCAATAAACATGCAAGGCGCCGTGGCGGGACTCCATaGGGCAGGTCAGGTAGTATC +
Preference number: 4 (lower is better)
Translates to: FPALPSGKQTSFNKHARRRGGTP*GRSGSI
Trigger: GATACTACCTGACCTGCCCCATGGAGTCCCGCCACG...GCGCCTTGCATGTTTATTGAAGGATGTTTGCTTTCCGGACGGAAGGGCGGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR TCA 90 bp CACAGCTGGAGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGACCATGTGGTAGCCTTTaGGCGATGAGGTACGGAAGA +
Preference number: 4 (lower is better)
Translates to: HSWRRVSSLLKSMDCGLGPCGSL*AMRYGR
Trigger: TCTTCCGTACCTCATCGCTCAAAGGCTACCACATGG...TCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCTCCAGCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR GCA 90 bp TTTCCCGCCCTTCCGTCCGGAAAGCAAACATCCTTCAATAAACATGCAAGGCGCCACTCTCGCCCCGAATaGGTCGAAACCGAGGGATCT +
Preference number: 4 (lower is better)
Translates to: FPALPSGKQTSFNKHARRHSRPE*VETEGS
Trigger: AGATCCCTCGGTTTCGACGCATTCGGGGCGAGAGTG...GCGCCTTGCATGTTTATTGAAGGATGTTTGCTTTCCGGACGGAAGGGCGGGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR GCA 90 bp AGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTGGAAGGTCTCTCCATTaGTGGCTTGCATGCGGTGAA +
Preference number: 4 (lower is better)
Translates to: RRVSSLLKSMDCGLGGPLGRSLH*WLACGE
Trigger: TTCACCGCATGCAAGCCAGCAATGGAGAGACCTTCC...AAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp CCACTCTCGTCAAACCCATGCCTGTCCCTGGACTCTGATCCTATCCCAGGGAGCGGCCTTGATGAACTGTaGGTTCTGCATGACTGTATC +
Preference number: 4 (lower is better)
Translates to: PLSSNPCLSLDSDPIPGSGLDEL*VLHDCI
Trigger: GATACAGTCATGCAGAACCCACAGTTCATCAAGGCC...GCTCCCTGGGATAGGATCAGAGTCCAGGGACAGGCATGGGTTTGACGAGAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR TCA 90 bp GGCTCCTCCTTCAAAATGACCACGGCAAATCAACCTAGGGCTCAGTTTTCTTCTATGGCCGCTGCACGGTaGAAGGGCTGGATCTCCATG +
Preference number: 4 (lower is better)
Translates to: GSSFKMTTANQPRAQFSSMAAAR*KGWISM
Trigger: CATGGAGATCCAGCCCTTTCACCGTGCAGCGGCCAT...AGAAGAAAACTGAGCCCTAGGTTGATTTGCCGTGGTCATTTTGAAGGAGGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR GCA 90 bp AGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTCCACCTTGTGAATGGTaGCCCTGTCTGTGGTTAGAT +
Preference number: 4 (lower is better)
Translates to: RRVSSLLKSMDCGLGGPLPPCEW*PCLWLD
Trigger: ATCTAACCACAGACAGGGGCACCATTCACAAGGTGG...AAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR GCA 90 bp CACAGCTGGAGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGCTGGATTAATGGACTaGAGCACTGATCGTTGGGAG +
Preference number: 4 (lower is better)
Translates to: HSWRRVSSLLKSMDCGLGAGLMD*STDRWE
Trigger: CTCCCAACGATCAGTGCTGCAGTCCATTAATCCAGC...TCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCTCCAGCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp CAAATCAACCTAGGGCTCAGTTTTCTTCTTCGCTCTCCCCTGTCTCCCTCACCCTGGCTAAAGTCCACATaGTCCTGCCCTTTCCAGACG +
Preference number: 4 (lower is better)
Translates to: QINLGLSFLLRSPLSPSPWLKST*SCPFQT
Trigger: CGTCTGGAAAGGGCAGGACCATGTGGACTTTAGCCA...GGGTGAGGGAGACAGGGGAGAGCGAAGAAGAAAACTGAGCCCTAGGTTGATTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR GCA 90 bp AGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTTTCCCGTTGTATTCCTaGTTCCGGATGGTAGAGTAC +
Preference number: 4 (lower is better)
Translates to: RRVSSLLKSMDCGLGGPLFPLYS*FRMVEY
Trigger: GTACTCTACCATCCGGAAGCAGGAATACAACGGGAA...AAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp GGAAAGCAAACATCCTTCAATAAACATGCAAGGCGCTGTCCGGTGGGACCCAGGTGGTGCCCCTGTCTGTaGTTAGATAAAGCACATGGA +
Preference number: 4 (lower is better)
Translates to: GKQTSFNKHARRCPVGPRWCPCL*LDKAHG
Trigger: TCCATGTGCTTTATCTAACCACAGACAGGGGCACCA...CCTGGGTCCCACCGGACAGCGCCTTGCATGTTTATTGAAGGATGTTTGCTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp CAAATCAACCTAGGGCTCAGTTTTCTTCTTCGCTCTCCCCTGTCTCCCTCACCCCTTAGAATGGAACAATaGTGTCTTCAGTGGCCCCAT +
Preference number: 4 (lower is better)
Translates to: QINLGLSFLLRSPLSPSPLRMEQ*CLQWPH
Trigger: ATGGGGCCACTGAAGACACCATTGTTCCATTCTAAG...GGGTGAGGGAGACAGGGGAGAGCGAAGAAGAAAACTGAGCCCTAGGTTGATTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp TTCAAAATGACCACGGCAAATCAACCTAGGGCTCAGTTTTCTTCTTCGCTCTCCGGGACACTCTCTGTGTaGCTCCGCTGGATTAATGGA +
Preference number: 4 (lower is better)
Translates to: FKMTTANQPRAQFSSSLSGTLSV*LRWING
Trigger: TCCATTAATCCAGCGGAGCCACACAGAGAGTGTCCC...GGAGAGCGAAGAAGAAAACTGAGCCCTAGGTTGATTTGCCGTGGTCATTTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CCA 90 bp TTCAAAATGACCACGGCAAATCAACCTAGGGCTCAGTTTTCTTCTTCGCTCTCCGGAAACCTTCTGCAATaGAGCCTCGTCTGGTTTAGG +
Preference number: 4 (lower is better)
Translates to: FKMTTANQPRAQFSSSLSGNLLQ*SLVWFR
Trigger: CCTAAACCAGACGAGGCTCCATTGCAGAAGGTTTCC...GGAGAGCGAAGAAGAAAACTGAGCCCTAGGTTGATTTGCCGTGGTCATTTTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp TCCTGCCCTTTCCAGACGGCGGAGATGCGGGGTCCGCTCCTCGAGTaGCCTTGGGCGGAGGCGGCGGCCACCCAGAACACCAGCAGAAGC +
Preference number: 5 (lower is better)
Translates to: SCPFQTAEMRGPLLE*PWAEAAATQNTSRS
Trigger: GCTTCTGCTGGTGTTCTGGGTGGCCGCCGCCTCCGCCCAAGGCCACTCGAGGAGCGGACCCCGCATCTCCGCCGTCTGGAAAGGGCAGGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp TGTTCACCTTTCCAGACGGCGGAGATGCGGGGTCCGCTCCTCGAGTaGCCTTGGGCGGAGGCGGCGGCCACCCAGAACACCAGCAGAAGC +
Preference number: 5 (lower is better)
Translates to: CSPFQTAEMRGPLLE*PWAEAAATQNTSRS
Trigger: GCTTCTGCTGGTGTTCTGGGTGGCCGCCGCCTCCGCCCAAGGCCACTCGAGGAGCGGACCCCGCATCTCCGCCGTCTGGAAAGGTGAACA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214314.2
CDS-3UTR CAA 90 bp ACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACTCAGCCCCAAGGTGCTCCTCGAGTGGCCTaGGGCGGAGGCGGCGGCCAC +
Preference number: 5 (lower is better)
Translates to: TGHPAVEQGRTQRTQPQGAPRVA*GGGGGH
Trigger: GTGGCCGCCGCCTCCGCCCAAGGCCACTCGAGGAGC...ACCTTGGGGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp CACACTGTCATTCACCAAGTTCCAGCAGCTGGGCTTCCGGGCATTGGTGCCACAGCTCCTCGAGTGGCCTaGGGCGGAGGCGGCGGCCAC +
Preference number: 5 (lower is better)
Translates to: HTVIHQVPAAGLPGIGATAPRVA*GGGGGH
Trigger: GTGGCCGCCGCCTCCGCCCAAGGCCACTCGAGGAGC...TGTGGCACCAATGCCCGGAAGCCCAGCTGCTGGAACTTGGTGAATGACAGTGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214314.2
CDS GCA 90 bp AAAAGCACGGTGTGTGGCTCAGGCTGGCTAAAGTCCACATGGTCCTaGCCTTTCCAGACGGCGGAGATGCGGGGTCCGCTCCTCGAGTGG +
Preference number: 5 (lower is better)
Translates to: KSTVCGSGWLKSTWS*PFQTAEMRGPLLEW
Trigger: CCACTCGAGGAGCGGACCCCGCATCTCCGCCGTCTGGAAAGGGCAGGACCATGTGGACTTTAGCCAGCCTGAGCCACACACCGTGCTTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp CAGGGACACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACTCAGCCGATGCAGCTAGGGCTTaGGTGGCCTGGCTCACAGCT +
Preference number: 5 (lower is better)
Translates to: QGHWPPSSGTGKDAKDSADAARA*VAWLTA
Trigger: AGCTGTGAGCCAGGCCACCAAAGCCCTAGCTGCATC...GGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp GCAGAGTCCTGGAACCTCCCCCTGTGGACCCGGCTCCTCCTTCAAAATGACCACGGAGCCTCGGGGTTCTaGTCAGGGTTGTCTTCTCGG +
Preference number: 5 (lower is better)
Translates to: AESWNLPLWTRLLLQNDHGASGF*SGLSSR
Trigger: CCGAGAAGACAACCCTGACAAGAACCCCGAGGCTCC...GTGGTCATTTTGAAGGAGGAGCCGGGTCCACAGGGGGAGGTTCCAGGACTCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp GAGAAGCTGCCCGGCTCATGGAAAAGCACGGTGTGTGGCTCAGGCTaGCTAAAGTCCACATGGTCCTGCCCTTTCCAGACGGCGGAGATG +
Preference number: 5 (lower is better)
Translates to: EKLPGSWKSTVCGSG*LKSTWSCPFQTAEM
Trigger: CATCTCCGCCGTCTGGAAAGGGCAGGACCATGTGGACTTTAGCCAGCCTGAGCCACACACCGTGCTTTTCCATGAGCCGGGCAGCTTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp ACCTTGCCACGTCCACCCACCCAGACAGAGAAGCTGCCCGGCTCATaGAAAAGCACGGTGTGTGGCTCAGGCTGGCTAAAGTCCACATGG +
Preference number: 5 (lower is better)
Translates to: TLPRPPTQTEKLPGS*KSTVCGSGWLKSTW
Trigger: CCATGTGGACTTTAGCCAGCCTGAGCCACACACCGTGCTTTTCCATGAGCCGGGCAGCTTCTCTGTCTGGGTGGGTGGACGTGGCAAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp CTGATGGCCCAGCTTCACAGTCGGCGCCTTCCTTCTATAGTCCCTCACTGTCCCCCTGACAGGACCCCTTaGTGGAGCCGATGTTCACCG +
Preference number: 5 (lower is better)
Translates to: LMAQLHSRRLPSIVPHCPPDRTP*WSRCSP
Trigger: CGGTGAACATCGGCTCCACAAAGGGGTCCTGTCAGG...GGGACAGTGAGGGACTATAGAAGGAAGGCGCCGACTGTGAAGCTGGGCCATCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp GGTCTGCAGGGACACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACCGAGGGATCTTCCCGTaGTATTCCTGCTTCCGGATG +
Preference number: 5 (lower is better)
Translates to: GLQGHWPPSSGTGKDAKDRGIFP*YSCFRM
Trigger: CATCCGGAAGCAGGAATACAACGGGAAGATCCCTCG...GTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGTGTCCCTGCAGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp CACAGCTGGAGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGAGGTAGGAGCCCTCTaGGGCCTCGCAGCGGTAGTG +
Preference number: 5 (lower is better)
Translates to: HSWRRVSSLLKSMDCGLGEVGAL*GLAAVV
Trigger: CACTACCGCTGCGAGGCCCAAGAGGGCTCCTACCTC...TCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCTCCAGCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 90 bp CGATGTTCACCGTGCGCACAGAGGCATTCTTGCCCTCGGGGAAGTTaGAGTGGTAGACCTTGCCACGTCCACCCACCCAGACAGAGAAGC +
Preference number: 5 (lower is better)
Translates to: RCSPCAQRHSCPRGS*SGRPCHVHPPRQRS
Trigger: GCTTCTCTGTCTGGGTGGGTGGACGTGGCAAGGTCTACCACTTCAACTTCCCCGAGGGCAAGAATGCCTCTGTGCGCACGGTGAACATCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp CACCCAGACAGAGAAGCTGCCCGGCTCATGGAAAAGCACGGTGTGTaGCTCAGGCTGGCTAAAGTCCACATGGTCCTGCCCTTTCCAGAC +
Preference number: 5 (lower is better)
Translates to: HPDREAARLMEKHGV*LRLAKVHMVLPFPD
Trigger: GTCTGGAAAGGGCAGGACCATGTGGACTTTAGCCAGCCTGAGCCACACACCGTGCTTTTCCATGAGCCGGGCAGCTTCTCTGTCTGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp GCAGAGTCCTGGAACCTCCCCCTGTGGACCCGGCTCCTCCTTCAAAATGACCACGTATGGGCTGCTTTTTaGGGAGGCACATGCCAGGTC +
Preference number: 5 (lower is better)
Translates to: AESWNLPLWTRLLLQNDHVWAAF*GGTCQV
Trigger: GACCTGGCATGTGCCTCCCAAAAAAGCAGCCCATAC...GTGGTCATTTTGAAGGAGGAGCCGGGTCCACAGGGGGAGGTTCCAGGACTCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp CATTCTCCTCATGGCGCCATAAGTAAGTGGCGTGGCGGGACTCCATaGGGCAGGTCAGGTAGTATCGAGAGTTCCGAGCCAGGGAAACCT +
Preference number: 5 (lower is better)
Translates to: HSPHGAISKWRGGTP*GRSGSIESSEPGKP
Trigger: AGGTTTCCCTGGCTCGGAACTCTCGATACTACCTGACCTGCCCCATGGAGTCCCGCCACGCCACTTACTTATGGCGCCATGAGGAGAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp CGGGCCGTGAGGTTCTCAATGAACAGGATGCAGCTAGGGCTTTGGTaGCCTGGCTCACAGCTCTGTTCCACATTCTCCTCATGGCGCCAT +
Preference number: 5 (lower is better)
Translates to: RAVRFSMNRMQLGLW*PGSQLCSTFSSWRH
Trigger: ATGGCGCCATGAGGAGAATGTGGAACAGAGCTGTGAGCCAGGCCACCAAAGCCCTAGCTGCATCCTGTTCATTGAGAACCTCACGGCCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp AGAAGGGTCAGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTGCTACTCGGGACACATaGAGAGGAGCCTCGGGGTTC +
Preference number: 5 (lower is better)
Translates to: RRVSSLLKSMDCGLGGPLATRDT*RGASGF
Trigger: GAACCCCGAGGCTCCTCTCAATGTGTCCCGAGTAGC...AAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCTGACCCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 90 bp ACTGGCCACTGGGGTCAGGGAGCAGGAAGACATCTTGCAGCCGATTaGAGTTCCTGTTGGTGGCTGCATCGCTGCAGACCAACATGGCTT +
Preference number: 5 (lower is better)
Translates to: TGHWGQGAGRHLAAD*SSCWWLHRCRPTWL
Trigger: AAGCCATGTTGGTCTGCAGCGATGCAGCCACCAACAGGAACTTCAATCGGCTGCAAGATGTCTTCCTGCTCCCTGACCCCAGTGGCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp TGGTGTCTTCAGTGGCCCCATAGGTTCCACCCTCTGAGCCACCTCTaGGTGACTATCAGCTACCTGGAAGGTTTCTGTGGGTATGGGCTG +
Preference number: 5 (lower is better)
Translates to: WCLQWPHRFHPLSHL*VTISYLEGFCGYGL
Trigger: CAGCCCATACCCACAGAAACCTTCCAGGTAGCTGATAGTCACCCAGAGGTGGCTCAGAGGGTGGAACCTATGGGGCCACTGAAGACACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp GCTCACAGCTCTGTTCCACATTCTCCTCATGGCGCCATAAGTAAGTaGCGTGGCGGGACTCCATGGGGCAGGTCAGGTAGTATCGAGAGT +
Preference number: 5 (lower is better)
Translates to: AHSSVPHSPHGAISK*RGGTPWGRSGSIES
Trigger: ACTCTCGATACTACCTGACCTGCCCCATGGAGTCCCGCCACGCCACTTACTTATGGCGCCATGAGGAGAATGTGGAACAGAGCTGTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp ACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACTCAGCCCCAAGGTAGGAAGGTGTTCCACTaGGAGACAGACAACGAACTC +
Preference number: 5 (lower is better)
Translates to: TGHPAVEQGRTQRTQPQGRKVFH*ETDNEL
Trigger: GAGTTCGTTGTCTGTCTCCAAGTGGAACACCTTCCT...ACCTTGGGGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp AGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTGGGAAGCTCCGATTGAAGTTCCTGTaGGTGGCTGCATCGCTGCAG +
Preference number: 5 (lower is better)
Translates to: SSLLKSMDCGLGGPLGKLRLKFL*VAASLQ
Trigger: CTGCAGCGATGCAGCCACCAACAGGAACTTCAATCG...GAGCTTCCCAAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp AGCTCTCTGCTGAAATCTATGGACTGTGGGCTGGGAGGCCCACTTGGGAAGCTCTCGTCTGGTTTAGGGTaGGGACACTCTCTGTGTGGC +
Preference number: 5 (lower is better)
Translates to: SSLLKSMDCGLGGPLGKLSSGLG*GHSLCG
Trigger: GCCACACAGAGAGTGTCCCAACCCTAAACCAGACGA...GAGCTTCCCAAGTGGGCCTCCCAGCCCACAGTCCATAGATTTCAGCAGAGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 90 bp GGCACATGCCAGGTCGAGGGTTGGGAAGGCCCATGTGGTAGCCTTTaGGCGATGAGGTACGGAAGACTCTGTCAATGTCACCAAGCGAAT +
Preference number: 5 (lower is better)
Translates to: GTCQVEGWEGPCGSL*AMRYGRLCQCHQAN
Trigger: ATTCGCTTGGTGACATTGACAGAGTCTTCCGTACCTCATCGCTCAAAGGCTACCACATGGGCCTTCCCAACCCTCGACCTGGCATGTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp CTGATGGCCCAGCTTCACAGTCGGCGCCTTCCTTCTATAGTCCCTCACTGTCCCGAGCAGGAAGACATCTaGCAGCCGATTGAAGTTCCT +
Preference number: 5 (lower is better)
Translates to: LMAQLHSRRLPSIVPHCPEQEDI*QPIEVP
Trigger: AGGAACTTCAATCGGCTGCAAGATGTCTTCCTGCTC...GGGACAGTGAGGGACTATAGAAGGAAGGCGCCGACTGTGAAGCTGGGCCATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp CACCAAGTGACATCACCACACTGTCATTCACCAAGTTCCAGCAGCTGGGCTTCCCCTGACAGGACCCCTTaGTGGAGCCGATGTTCACCT +
Preference number: 5 (lower is better)
Translates to: HQVTSPHCHSPSSSSWASPDRTP*WSRCSP
Trigger: AGGTGAACATCGGCTCCACAAAGGGGTCCTGTCAGG...GGAAGCCCAGCTGCTGGAACTTGGTGAATGACAGTGTGGTGATGTCACTTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214314.2
CDS-3UTR CAA 90 bp ACTGGCCACCCAGCAGTGGAACAGGGAAGGACGCAAAGGACTCAGCCCCAAGGTCTTATCATCATAGGCTaGGTCTTGGTGCACAATGGT +
Preference number: 5 (lower is better)
Translates to: TGHPAVEQGRTQRTQPQGLIIIG*VLVHNG
Trigger: ACCATTGTGCACCAAGACCAAGCCTATGATGATAAG...ACCTTGGGGCTGAGTCCTTTGCGTCCTTCCCTGTTCCACTGCTGGGTGGCCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 90 bp TGGTGCCACAGACCAGCAGCCCATTACCCCGCCTTTCTAGAAGAGTaGTGTAATTCCCACAGTCCTGTTTGTCCTGACAGGACCCCTTTG +
Preference number: 5 (lower is better)
Translates to: WCHRPAAHYPAFLEE*CNSHSPVCPDRTPL
Trigger: CAAAGGGGTCCTGTCAGGACAAACAGGACTGTGGGAATTACATCACTCTTCTAGAAAGGCGGGGTAATGGGCTGCTGGTCTGTGGCACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 90 bp GTTCTCATCCGGGCTGAAGGGGGCATAGCCTTTCATCTCACCAAGTaGCATCACCACACTGTCATTCACCAAGTTCCAGCAGCTGGGCTT +
Preference number: 5 (lower is better)
Translates to: VLIRAEGGIAFHLTK*HHHTVIHQVPAAGL
Trigger: AAGCCCAGCTGCTGGAACTTGGTGAATGACAGTGTGGTGATGTCACTTGGTGAGATGAAAGGCTATGCCCCCTTCAGCCCGGATGAGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 90 bp CGCCGGTCAGCATCCAATGATATAGCCTGGATGGCCGCTGCACGGTaGAAGGGCTGGATCTCCATGATATTGAAGACAAAGCTATGGTCC +
Preference number: 5 (lower is better)
Translates to: RRSASNDIAWMAAAR*KGWISMILKTKLWS
Trigger: GGACCATAGCTTTGTCTTCAATATCATGGAGATCCAGCCCTTTCACCGTGCAGCGGCCATCCAGGCTATATCATTGGATGCTGACCGGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS GCA 90 bp TCGCCCCGAATGCGTCGAAACCGAGGGATCTTCCCGTTGTATTCCTaGTTCCGGATGGTAGAGTACACTTCATCTCCTTCAAACAGAACC +
Preference number: 5 (lower is better)
Translates to: SPRMRRNRGIFPLYS*FRMVEYTSSPSNRT
Trigger: GGTTCTGTTTGAAGGAGATGAAGTGTACTCTACCATCCGGAAGCAGGAATACAACGGGAAGATCCCTCGGTTTCGACGCATTCGGGGCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp GCGGTGAACGACCACTTTCTGGTAATGGTACTTAGAATGGAACAATaGTGTCTTCAGTGGCCCCATAGGTTCCACCCTCTGAGCCACCTC +
Preference number: 5 (lower is better)
Translates to: AVNDHFLVMVLRMEQ*CLQWPHRFHPLSHL
Trigger: GAGGTGGCTCAGAGGGTGGAACCTATGGGGCCACTGAAGACACCATTGTTCCATTCTAAGTACCATTACCAGAAAGTGGTCGTTCACCGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp CTGATGGCCCAGCTTCACAGTCGGCGCCTTCCTTCTATAGTCCCTCACTGTCCCTGGATCTCCATGATATaGAAGACAAAGCTATGGTCC +
Preference number: 5 (lower is better)
Translates to: LMAQLHSRRLPSIVPHCPWISMI*KTKLWS
Trigger: GGACCATAGCTTTGTCTTCAATATCATGGAGATCCA...GGGACAGTGAGGGACTATAGAAGGAAGGCGCCGACTGTGAAGCTGGGCCATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 90 bp ACACTTCATCTCCTTCAAACAGAACCAGGGAGTTCTCATCCGGGCTaGAGGGGGCATAGCCTTTCATCTCACCAAGTGACATCACCACAC +
Preference number: 5 (lower is better)
Translates to: TLHLLQTEPGSSHPG*RGHSLSSHQVTSPH
Trigger: GTGTGGTGATGTCACTTGGTGAGATGAAAGGCTATGCCCCCTTCAGCCCGGATGAGAACTCCCTGGTTCTGTTTGAAGGAGATGAAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS-3UTR CAA 90 bp TTCAAAATGACCACGGCAAATCAACCTAGGGCTCAGTTTTCTTCTTCGCTCTCCCGCACAGAGGCATTCTaGCCCTCGGGGAAGTTGAAG +
Preference number: 5 (lower is better)
Translates to: FKMTTANQPRAQFSSSLSRTEAF*PSGKLK
Trigger: CTTCAACTTCCCCGAGGGCAAGAATGCCTCTGTGCG...GGAGAGCGAAGAAGAAAACTGAGCCCTAGGTTGATTTGCCGTGGTCATTTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS GCA 90 bp TGCCCCTGTCTGTGGTTAGATAAAGCACATGGAAGGTCTCTCCATTaGTGGCTTGCATGCGGTGAACGACCACTTTCTGGTAATGGTACT +
Preference number: 5 (lower is better)
Translates to: CPCLWLDKAHGRSLH*WLACGERPLSGNGT
Trigger: AGTACCATTACCAGAAAGTGGTCGTTCACCGCATGCAAGCCAGCAATGGAGAGACCTTCCATGTGCTTTATCTAACCACAGACAGGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 90 bp CACTTTCTGGTAATGGTACTTAGAATGGAACAATGGTGTCTTCAGTaGCCCCATAGGTTCCACCCTCTGAGCCACCTCTGGGTGACTATC +
Preference number: 5 (lower is better)
Translates to: HFLVMVLRMEQWCLQ*PHRFHPLSHLWVTI
Trigger: GATAGTCACCCAGAGGTGGCTCAGAGGGTGGAACCTATGGGGCCACTGAAGACACCATTGTTCCATTCTAAGTACCATTACCAGAAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp TTCCAGACGGCGGAGATGCGGGGTCCGCTCCTCGAGTaGCCTTGGGCGGAGGCGGCGGCCACCCAGAACACC +
Preference number: 6 (lower is better)
Translates to: FQTAEMRGPLLE*PWAEAAATQNT
Trigger: GGTGTTCTGGGTGGCCGCCGCCTCCGCCCAAGGCCACTCGAGGAGCGGACCCCGCATCTCCGCCGTCTGGAA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043059.9
ENSMUST00000214314.2
CDS GCA 72 bp AGTCCACATGGTCCTGCCCTTTCCAGACGGCGGAGATaGGGGGTCCGCTCCTCGAGTGGCCTTGGGCGGAGG +
Preference number: 6 (lower is better)
Translates to: SPHGPALSRRRR*GVRSSSGLGRR
Trigger: CCTCCGCCCAAGGCCACTCGAGGAGCGGACCCCGCATCTCCGCCGTCTGGAAAGGGCAGGACCATGTGGACT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS GCA 72 bp TGTGGAGCCGATGTTCACCTTTCCAGACGGCGGAGATaGGGGGTCCGCTCCTCGAGTGGCCTTGGGCGGAGG +
Preference number: 6 (lower is better)
Translates to: CGADVHLSRRRR*GVRSSSGLGRR
Trigger: CCTCCGCCCAAGGCCACTCGAGGAGCGGACCCCGCATCTCCGCCGTCTGGAAAGGTGAACATCGGCTCCACA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214314.2
CDS CAA 72 bp CTCCCAGTGTTGAGCCTCACGGAGGTAGGAGCCCTCTaGGGCCTCGCAGCGGTAGTGGCCATACTGACGGGC +
Preference number: 6 (lower is better)
Translates to: LPVLSLTEVGAL*GLAAVVAILTG
Trigger: GCCCGTCAGTATGGCCACTACCGCTGCGAGGCCCAAGAGGGCTCCTACCTCCGTGAGGCTCAACACTGGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 72 bp GGCCAGTGCTCTGTCCTCTGGCAGCAGCTCCCAGTGTaGAGCCTCACGGAGGTAGGAGCCCTCTTGGGCCTC +
Preference number: 6 (lower is better)
Translates to: GQCSVLWQQLPV*SLTEVGALLGL
Trigger: GAGGCCCAAGAGGGCTCCTACCTCCGTGAGGCTCAACACTGGGAGCTGCTGCCAGAGGACAGAGCACTGGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 90 bp TGGCAGCAGCTCCCAGTGTTGAGCCTCACGGAGGTAGGAGCCCTCTaGGGCCTCGCAGCGGTAGTGGCCATACTGACGGGCCGTGAGGTT +
Preference number: 6 (lower is better)
Translates to: WQQLPVLSLTEVGAL*GLAAVVAILTGREV
Trigger: AACCTCACGGCCCGTCAGTATGGCCACTACCGCTGCGAGGCCCAAGAGGGCTCCTACCTCCGTGAGGCTCAACACTGGGAGCTGCTGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS GCA 72 bp GTGTGTGGCTCAGGCTGGCTAAAGTCCACATGGTCCTaGCCTTTCCAGACGGCGGAGATGCGGGGTCCGCTC +
Preference number: 6 (lower is better)
Translates to: VCGSGWLKSTWS*PFQTAEMRGPL
Trigger: GAGCGGACCCCGCATCTCCGCCGTCTGGAAAGGGCAGGACCATGTGGACTTTAGCCAGCCTGAGCCACACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp AGCACGGTGTGTGGCTCAGGCTGGCTAAAGTCCACATaGTCCTGCCCTTTCCAGACGGCGGAGATGCGGGGT +
Preference number: 6 (lower is better)
Translates to: STVCGSGWLKST*SCPFQTAEMRG
Trigger: ACCCCGCATCTCCGCCGTCTGGAAAGGGCAGGACCATGTGGACTTTAGCCAGCCTGAGCCACACACCGTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 72 bp CCGTGCGCACAGAGGCATTCTTGCCCTCGGGGAAGTTaGAGTGGTAGACCTTGCCACGTCCACCCACCCAGA +
Preference number: 6 (lower is better)
Translates to: PCAQRHSCPRGS*SGRPCHVHPPR
Trigger: TCTGGGTGGGTGGACGTGGCAAGGTCTACCACTTCAACTTCCCCGAGGGCAAGAATGCCTCTGTGCGCACGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp CGTCCACCCACCCAGACAGAGAAGCTGCCCGGCTCATaGAAAAGCACGGTGTGTGGCTCAGGCTGGCTAAAG +
Preference number: 6 (lower is better)
Translates to: RPPTQTEKLPGS*KSTVCGSGWLK
Trigger: CTTTAGCCAGCCTGAGCCACACACCGTGCTTTTCCATGAGCCGGGCAGCTTCTCTGTCTGGGTGGGTGGACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS GCA 72 bp TCACCAAGTTCCAGCAGCTGGGCTTCCGGGCATTGGTaGCACAGACCAGCAGCCCATTACCCCGCCTTTCTA +
Preference number: 6 (lower is better)
Translates to: SPSSSSWASGHW*HRPAAHYPAFL
Trigger: TAGAAAGGCGGGGTAATGGGCTGCTGGTCTGTGGCACCAATGCCCGGAAGCCCAGCTGCTGGAACTTGGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp CCCGGCTCATGGAAAAGCACGGTGTGTGGCTCAGGCTaGCTAAAGTCCACATGGTCCTGCCCTTTCCAGACG +
Preference number: 6 (lower is better)
Translates to: PGSWKSTVCGSG*LKSTWSCPFQT
Trigger: CGTCTGGAAAGGGCAGGACCATGTGGACTTTAGCCAGCCTGAGCCACACACCGTGCTTTTCCATGAGCCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp AGAGAAGCTGCCCGGCTCATGGAAAAGCACGGTGTGTaGCTCAGGCTGGCTAAAGTCCACATGGTCCTGCCC +
Preference number: 6 (lower is better)
Translates to: REAARLMEKHGV*LRLAKVHMVLP
Trigger: GGGCAGGACCATGTGGACTTTAGCCAGCCTGAGCCACACACCGTGCTTTTCCATGAGCCGGGCAGCTTCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp CATGGCGCCATAAGTAAGTGGCGTGGCGGGACTCCATaGGGCAGGTCAGGTAGTATCGAGAGTTCCGAGCCA +
Preference number: 6 (lower is better)
Translates to: HGAISKWRGGTP*GRSGSIESSEP
Trigger: TGGCTCGGAACTCTCGATACTACCTGACCTGCCCCATGGAGTCCCGCCACGCCACTTACTTATGGCGCCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 72 bp TCATTCACCAAGTTCCAGCAGCTGGGCTTCCGGGCATaGGTGCCACAGACCAGCAGCCCATTACCCCGCCTT +
Preference number: 6 (lower is better)
Translates to: SFTKFQQLGFRA*VPQTSSPLPRL
Trigger: AAGGCGGGGTAATGGGCTGCTGGTCTGTGGCACCAATGCCCGGAAGCCCAGCTGCTGGAACTTGGTGAATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 90 bp CACTGGCCACTGGGGTCAGGGAGCAGGAAGACATCTTGCAGCCGATaGAAGTTCCTGTTGGTGGCTGCATCGCTGCAGACCAACATGGCT +
Preference number: 6 (lower is better)
Translates to: HWPLGSGSRKTSCSR*KFLLVAASLQTNMA
Trigger: AGCCATGTTGGTCTGCAGCGATGCAGCCACCAACAGGAACTTCAATCGGCTGCAAGATGTCTTCCTGCTCCCTGACCCCAGTGGCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 90 bp CTGACGGGCCGTGAGGTTCTCAATGAACAGGATGCAGCTAGGGCTTaGGTGGCCTGGCTCACAGCTCTGTTCCACATTCTCCTCATGGCG +
Preference number: 6 (lower is better)
Translates to: LTGREVLNEQDAARA*VAWLTALFHILLMA
Trigger: CGCCATGAGGAGAATGTGGAACAGAGCTGTGAGCCAGGCCACCAAAGCCCTAGCTGCATCCTGTTCATTGAGAACCTCACGGCCCGTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS GCA 72 bp CACTGGCCACTGGGGTCAGGGAGCAGGAAGACATCTTaGAGCCGATTGAAGTTCCTGTTGGTGGCTGCATCG +
Preference number: 6 (lower is better)
Translates to: HWPLGSGSRKTS*SRLKFLLVAAS
Trigger: CGATGCAGCCACCAACAGGAACTTCAATCGGCTGCAAGATGTCTTCCTGCTCCCTGACCCCAGTGGCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp CAGTGGCCCCATAGGTTCCACCCTCTGAGCCACCTCTaGGTGACTATCAGCTACCTGGAAGGTTTCTGTGGG +
Preference number: 6 (lower is better)
Translates to: QWPHRFHPLSHL*VTISYLEGFCG
Trigger: CCCACAGAAACCTTCCAGGTAGCTGATAGTCACCCAGAGGTGGCTCAGAGGGTGGAACCTATGGGGCCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 72 bp CTGGGGTCAGGGAGCAGGAAGACATCTTGCAGCCGATaGAAGTTCCTGTTGGTGGCTGCATCGCTGCAGACC +
Preference number: 6 (lower is better)
Translates to: LGSGSRKTSCSR*KFLLVAASLQT
Trigger: GGTCTGCAGCGATGCAGCCACCAACAGGAACTTCAATCGGCTGCAAGATGTCTTCCTGCTCCCTGACCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 72 bp CCACTGGCCACTGGGGTCAGGGAGCAGGAAGACATCTaGCAGCCGATTGAAGTTCCTGTTGGTGGCTGCATC +
Preference number: 6 (lower is better)
Translates to: PLATGVREQEDI*QPIEVPVGGCI
Trigger: GATGCAGCCACCAACAGGAACTTCAATCGGCTGCAAGATGTCTTCCTGCTCCCTGACCCCAGTGGCCAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 90 bp ACCACACTGTCATTCACCAAGTTCCAGCAGCTGGGCTTCCGGGCATaGGTGCCACAGACCAGCAGCCCATTACCCCGCCTTTCTAGAAGA +
Preference number: 6 (lower is better)
Translates to: TTLSFTKFQQLGFRA*VPQTSSPLPRLSRR
Trigger: TCTTCTAGAAAGGCGGGGTAATGGGCTGCTGGTCTGTGGCACCAATGCCCGGAAGCCCAGCTGCTGGAACTTGGTGAATGACAGTGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 72 bp TGGGGTCAGGGAGCAGGAAGACATCTTGCAGCCGATTaGAGTTCCTGTTGGTGGCTGCATCGCTGCAGACCA +
Preference number: 6 (lower is better)
Translates to: WGQGAGRHLAAD*SSCWWLHRCRP
Trigger: TGGTCTGCAGCGATGCAGCCACCAACAGGAACTTCAATCGGCTGCAAGATGTCTTCCTGCTCCCTGACCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp TCTGTTCCACATTCTCCTCATGGCGCCATAAGTAAGTaGCGTGGCGGGACTCCATGGGGCAGGTCAGGTAGT +
Preference number: 6 (lower is better)
Translates to: SVPHSPHGAISK*RGGTPWGRSGS
Trigger: ACTACCTGACCTGCCCCATGGAGTCCCGCCACGCCACTTACTTATGGCGCCATGAGGAGAATGTGGAACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 72 bp CTACCTGGAAGGTTTCTGTGGGTATGGGCTGCTTTTTaGGGAGGCACATGCCAGGTCGAGGGTTGGGAAGGC +
Preference number: 6 (lower is better)
Translates to: LPGRFLWVWAAF*GGTCQVEGWEG
Trigger: GCCTTCCCAACCCTCGACCTGGCATGTGCCTCCCAAAAAAGCAGCCCATACCCACAGAAACCTTCCAGGTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 90 bp GGGTCAGGGAGCAGGAAGACATCTTGCAGCCGATTGAAGTTCCTGTaGGTGGCTGCATCGCTGCAGACCAACATGGCTTTCAGGAAGGTG +
Preference number: 6 (lower is better)
Translates to: GSGSRKTSCSRLKFL*VAASLQTNMAFRKV
Trigger: CACCTTCCTGAAAGCCATGTTGGTCTGCAGCGATGCAGCCACCAACAGGAACTTCAATCGGCTGCAAGATGTCTTCCTGCTCCCTGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp CTCAATGAACAGGATGCAGCTAGGGCTTTGGTGGCCTaGCTCACAGCTCTGTTCCACATTCTCCTCATGGCG +
Preference number: 6 (lower is better)
Translates to: LNEQDAARALVA*LTALFHILLMA
Trigger: CGCCATGAGGAGAATGTGGAACAGAGCTGTGAGCCAGGCCACCAAAGCCCTAGCTGCATCCTGTTCATTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 72 bp AATTCCCACAGTCCTGTTTGTCCTGACAGGACCCCTTaGTGGAGCCGATGTTCACCGTGCGCACAGAGGCAT +
Preference number: 6 (lower is better)
Translates to: NSHSPVCPDRTP*WSRCSPCAQRH
Trigger: ATGCCTCTGTGCGCACGGTGAACATCGGCTCCACAAAGGGGTCCTGTCAGGACAAACAGGACTGTGGGAATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 72 bp AATTCCCACAGTCCTGTTTGTCCTGACAGGACCCCTTaGTGGAGCCGATGTTCACCTTTCCAGACGGCGGAG +
Preference number: 6 (lower is better)
Translates to: NSHSPVCPDRTP*WSRCSPFQTAE
Trigger: CTCCGCCGTCTGGAAAGGTGAACATCGGCTCCACAAAGGGGTCCTGTCAGGACAAACAGGACTGTGGGAATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214314.2
CDS GCA 72 bp GGTCCTGGTCCCCTGATTCCACCACCTTGTGAATGGTaGCCCTGTCTGTGGTTAGATAAAGCACATGGAAGG +
Preference number: 6 (lower is better)
Translates to: GPGPLIPPPCEW*PCLWLDKAHGR
Trigger: CCTTCCATGTGCTTTATCTAACCACAGACAGGGGCACCATTCACAAGGTGGTGGAATCAGGGGACCAGGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp GTATCGAGAGTTCCGAGCCAGGGAAACCTTCTGCAATaGAGCCTCGTCTGGTTTAGGGTTGGGACACTCTCT +
Preference number: 6 (lower is better)
Translates to: VSRVPSQGNLLQ*SLVWFRVGTLS
Trigger: AGAGAGTGTCCCAACCCTAAACCAGACGAGGCTCCATTGCAGAAGGTTTCCCTGGCTCGGAACTCTCGATAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp GTGAGGTTCTCAATGAACAGGATGCAGCTAGGGCTTTaGTGGCCTGGCTCACAGCTCTGTTCCACATTCTCC +
Preference number: 6 (lower is better)
Translates to: VRFSMNRMQLGL*WPGSQLCSTFS
Trigger: GGAGAATGTGGAACAGAGCTGTGAGCCAGGCCACCAAAGCCCTAGCTGCATCCTGTTCATTGAGAACCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 72 bp TCGCCCCGAATGCGTCGAAACCGAGGGATCTTCCCGTaGTATTCCTGCTTCCGGATGGTAGAGTACACTTCA +
Preference number: 6 (lower is better)
Translates to: SPRMRRNRGIFP*YSCFRMVEYTS
Trigger: TGAAGTGTACTCTACCATCCGGAAGCAGGAATACAACGGGAAGATCCCTCGGTTTCGACGCATTCGGGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 72 bp CGTGAGGTTCTCAATGAACAGGATGCAGCTAGGGCTTaGGTGGCCTGGCTCACAGCTCTGTTCCACATTCTC +
Preference number: 6 (lower is better)
Translates to: REVLNEQDAARA*VAWLTALFHIL
Trigger: GAGAATGTGGAACAGAGCTGTGAGCCAGGCCACCAAAGCCCTAGCTGCATCCTGTTCATTGAGAACCTCACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 72 bp CTCCTTCAAACAGAACCAGGGAGTTCTCATCCGGGCTaGAGGGGGCATAGCCTTTCATCTCACCAAGTGACA +
Preference number: 6 (lower is better)
Translates to: LLQTEPGSSHPG*RGHSLSSHQVT
Trigger: TGTCACTTGGTGAGATGAAAGGCTATGCCCCCTTCAGCCCGGATGAGAACTCCCTGGTTCTGTTTGAAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS GCA 72 bp GACATCTTGCAGCCGATTGAAGTTCCTGTTGGTGGCTaGATCGCTGCAGACCAACATGGCTTTCAGGAAGGT +
Preference number: 6 (lower is better)
Translates to: DILQPIEVPVGG*IAADQHGFQEG
Trigger: ACCTTCCTGAAAGCCATGTTGGTCTGCAGCGATGCAGCCACCAACAGGAACTTCAATCGGCTGCAAGATGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp AGGTTCTCAATGAACAGGATGCAGCTAGGGCTTTGGTaGCCTGGCTCACAGCTCTGTTCCACATTCTCCTCA +
Preference number: 6 (lower is better)
Translates to: RFSMNRMQLGLW*PGSQLCSTFSS
Trigger: TGAGGAGAATGTGGAACAGAGCTGTGAGCCAGGCCACCAAAGCCCTAGCTGCATCCTGTTCATTGAGAACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CAA 90 bp AGTTCACTCTCGCCCCGAATGCGTCGAAACCGAGGGATCTTCCCGTaGTATTCCTGCTTCCGGATGGTAGAGTACACTTCATCTCCTTCA +
Preference number: 6 (lower is better)
Translates to: SSLSPRMRRNRGIFP*YSCFRMVEYTSSPS
Trigger: TGAAGGAGATGAAGTGTACTCTACCATCCGGAAGCAGGAATACAACGGGAAGATCCCTCGGTTTCGACGCATTCGGGGCGAGAGTGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 72 bp AGACCAGCAGCCCATTACCCCGCCTTTCTAGAAGAGTaGTGTAATTCCCACAGTCCTGTTTGTCCTGACAGG +
Preference number: 6 (lower is better)
Translates to: RPAAHYPAFLEE*CNSHSPVCPDR
Trigger: CCTGTCAGGACAAACAGGACTGTGGGAATTACATCACTCTTCTAGAAAGGCGGGGTAATGGGCTGCTGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp GTAATGGTACTTAGAATGGAACAATGGTGTCTTCAGTaGCCCCATAGGTTCCACCCTCTGAGCCACCTCTGG +
Preference number: 6 (lower is better)
Translates to: VMVLRMEQWCLQ*PHRFHPLSHLW
Trigger: CCAGAGGTGGCTCAGAGGGTGGAACCTATGGGGCCACTGAAGACACCATTGTTCCATTCTAAGTACCATTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 72 bp CATGATATTGAAGACAAAGCTATGGTCCTGGTCCCCTaGTTCCACCACCTTGTGAATGGTGCCCCTGTCTGT +
Preference number: 6 (lower is better)
Translates to: HDIEDKAMVLVP*FHHLVNGAPVC
Trigger: ACAGACAGGGGCACCATTCACAAGGTGGTGGAATCAGGGGACCAGGACCATAGCTTTGTCTTCAATATCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS TCA 72 bp GCATCCAATGATATAGCCTGGATGGCCGCTGCACGGTaGAAGGGCTGGATCTCCATGATATTGAAGACAAAG +
Preference number: 6 (lower is better)
Translates to: ASNDIAWMAAAR*KGWISMILKTK
Trigger: CTTTGTCTTCAATATCATGGAGATCCAGCCCTTTCACCGTGCAGCGGCCATCCAGGCTATATCATTGGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS GCA 72 bp ATGCGTCGAAACCGAGGGATCTTCCCGTTGTATTCCTaGTTCCGGATGGTAGAGTACACTTCATCTCCTTCA +
Preference number: 6 (lower is better)
Translates to: MRRNRGIFPLYS*FRMVEYTSSPS
Trigger: TGAAGGAGATGAAGTGTACTCTACCATCCGGAAGCAGGAATACAACGGGAAGATCCCTCGGTTTCGACGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS GCA 72 bp CTGTGGTTAGATAAAGCACATGGAAGGTCTCTCCATTaGTGGCTTGCATGCGGTGAACGACCACTTTCTGGT +
Preference number: 6 (lower is better)
Translates to: LWLDKAHGRSLH*WLACGERPLSG
Trigger: ACCAGAAAGTGGTCGTTCACCGCATGCAAGCCAGCAATGGAGAGACCTTCCATGTGCTTTATCTAACCACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp GACCACTTTCTGGTAATGGTACTTAGAATGGAACAATaGTGTCTTCAGTGGCCCCATAGGTTCCACCCTCTG +
Preference number: 6 (lower is better)
Translates to: DHFLVMVLRMEQ*CLQWPHRFHPL
Trigger: CAGAGGGTGGAACCTATGGGGCCACTGAAGACACCATTGTTCCATTCTAAGTACCATTACCAGAAAGTGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9
CDS CCA 72 bp TGGTTAGATAAAGCACATGGAAGGTCTCTCCATTGCTaGCTTGCATGCGGTGAACGACCACTTTCTGGTAAT +
Preference number: 6 (lower is better)
Translates to: WLDKAHGRSLHC*LACGERPLSGN
Trigger: ATTACCAGAAAGTGGTCGTTCACCGCATGCAAGCCAGCAATGGAGAGACCTTCCATGTGCTTTATCTAACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043059.9