RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SEMA4A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028064

Ensembl transcript IDs: ENSMUST00000029700.12, ENSMUST00000107531.8, ENSMUST00000125526.8, ENSMUST00000127436.8, ENSMUST00000147200.8, ENSMUST00000165898.8, ENSMUST00000166237.8, ENSMUST00000169222.8, ENSMUST00000184487.8, ENSMUST00000184876.8, ENSMUST00000185137.8

Found 464 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGAGAATCGGCGGGCAGCAGGACCGCGTGGCGGATGATGTTGAATaGCAGCTGCCCTGGCTGAGCGCAGAGCAACTGGGCTTTGAGGAA +
Preference number: 1 (lower is better)
Translates to: GRIGGQQDRVADDVE*QLPWLSAEQLGFEE
Trigger: TTCCTCAAAGCCCAGTTGCTCTGCGCTCAGCCAGGGCAGCTGCCATTCAACATCATCCGCCACGCGGTCCTGCTGCCCGCCGATTCTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR TCA 90 bp CGAAGGAGGCATCCGCGTGCAGCCAGCGTAAGAAGATGTCAGTCTTaGGAACAGGCTGGGATCCCAGTGTCCGCATCAGGATGGGCTCGC +
Preference number: 1 (lower is better)
Translates to: RRRHPRAASVRRCQS*EQAGIPVSASGWAR
Trigger: GCGAGCCCATCCTGATGCGGACACTGGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTTACGCTGGCTGCACGCGGATGCCTCCTTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR CCA 90 bp TCCGCGTGCAGCCAGCGTAAGAAGATGTCAGTCTTGAGAACAGGCTaGGATCCCAGTGTCCGCATCAGGATGGGCTCGCTGCCCAGGAAG +
Preference number: 1 (lower is better)
Translates to: SACSQRKKMSVLRTG*DPSVRIRMGSLPRK
Trigger: CTTCCTGGGCAGCGAGCCCATCCTGATGCGGACACTGGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTTACGCTGGCTGCACGCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR CCA 90 bp CAAACTCGCTGGCTGTCTCCTCAAAGAAGAAATAGACGACCTGGGTaGATGGAATGGCTGCCACGAAGGAGGCATCCGCGTGCAGCCAGC +
Preference number: 1 (lower is better)
Translates to: QTRWLSPQRRNRRPG*MEWLPRRRHPRAAS
Trigger: GCTGGCTGCACGCGGATGCCTCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGGAGACAGCCAGCGAGTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR CCA 90 bp CCAGTGTCCGCATCAGGATGGGCTCGCTGCCCAGGAAGTTGTTCATaGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCTGTGTGCT +
Preference number: 1 (lower is better)
Translates to: PVSASGWARCPGSCS*CRNKASHRPRQLCA
Trigger: AGCACACAGCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGGACACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
3UTR GCA 90 bp GTGTCCGCATCAGGATGGGCTCGCTGCCCAGGAAGTTGTTCATGGTaGCGGAATAAAGCATCCCATCGACCAAGACAGCTGTGTGCTTGT +
Preference number: 1 (lower is better)
Translates to: VSASGWARCPGSCSW*RNKASHRPRQLCAC
Trigger: ACAAGCACACAGCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
3UTR CCA 90 bp TGGCTGTCTCCTCAAAGAAGAAATAGACGACCTGGGTGGATGGAATaGCTGCCACGAAGGAGGCATCCGCGTGCAGCCAGCGTAAGAAGA +
Preference number: 1 (lower is better)
Translates to: WLSPQRRNRRPGWME*LPRRRHPRAASVRR
Trigger: TCTTCTTACGCTGGCTGCACGCGGATGCCTCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGGAGACAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR GCA 90 bp GCTGCCCAGGAAGTTGTTCATGGTGCCGGAATAAAGCATCCCATCTaGACTCTTCTTAGATGCCTCTGCCCACAGGCAATGGCCTATGTA +
Preference number: 1 (lower is better)
Translates to: AAQEVVHGAGIKHPI*TLLRCLCPQAMAYV
Trigger: TACATAGGCCATTGCCTGTGGGCAGAGGCATCTAAGAAGAGTGCAGATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR GCA 90 bp GGTGCCGGAATAAAGCATCCCATCTGCACTCTTCTTAGATGCCTCTaGCCACAGGCAATGGCCTATGTAGTCTTCTGTGTTGAGCTCTTG +
Preference number: 1 (lower is better)
Translates to: GAGIKHPICTLLRCL*PQAMAYVVFCVELL
Trigger: CAAGAGCTCAACACAGAAGACTACATAGGCCATTGCCTGTGGGCAGAGGCATCTAAGAAGAGTGCAGATGGGATGCTTTATTCCGGCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR GCA 90 bp GTTCATGGTGCCGGAATAAAGCATCCCATCTGCACTCTTCTTAGATaGCTCTGCCCACAGGCAATGGCCTATGTAGTCTTCTGTGTTGAG +
Preference number: 1 (lower is better)
Translates to: VHGAGIKHPICTLLR*LCPQAMAYVVFCVE
Trigger: CTCAACACAGAAGACTACATAGGCCATTGCCTGTGGGCAGAGGCATCTAAGAAGAGTGCAGATGGGATGCTTTATTCCGGCACCATGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR GCA 90 bp TGGTCCACTTCTTCTGCAGCAGCTTTTCACCGCCCACGTCGTTCTTaGAGACTTGAGCCACCCTGGATATATACAGCTCTTCAAAGAAGT +
Preference number: 1 (lower is better)
Translates to: WSTSSAAAFHRPRRS*RLEPPWIYTALQRS
Trigger: ACTTCTTTGAAGAGCTGTATATATCCAGGGTGGCTCAAGTCTGCAAGAACGACGTGGGCGGTGAAAAGCTGCTGCAGAAGAAGTGGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR CCA 90 bp ATGGCCTATGTAGTCTTCTGTGTTGAGCTCTTGCCAGCCTGTTCCTaGTCCTTCCTCAAACACCAGTCCCAGAGAAATCACTGTCTTGTG +
Preference number: 1 (lower is better)
Translates to: MAYVVFCVELLPACS*SFLKHQSQRNHCLV
Trigger: CACAAGACAGTGATTTCTCTGGGACTGGTGTTTGAGGAAGGACCAGGAACAGGCTGGCAAGAGCTCAACACAGAAGACTACATAGGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR CCA 90 bp GTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTaGCTCTTCCTGTCACAGCACAAGTACAGGTATGGAGACAGCCCA +
Preference number: 1 (lower is better)
Translates to: VTGGLLGQSKSKKPV*LFLSQHKYRYGDSP
Trigger: TGGGCTGTCTCCATACCTGTACTTGTGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CCA 90 bp CACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGGCTCTTaGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCAC +
Preference number: 1 (lower is better)
Translates to: HLSWSPGARLLQEGS*VNQNQRNLSGSSCH
Trigger: GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CCA 90 bp TTTGTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTaGAGCACGTTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCA +
Preference number: 1 (lower is better)
Translates to: FVTTESQTATPFMVS*STFVTGGLLGQSKS
Trigger: TGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CCA 90 bp GAGCCACCCTGGATATATACAGCTCTTCAAAGAAGTCAAACTCGCTaGCTGTCTCCTCAAAGAAGAAATAGACGACCTGGGTGGATGGAA +
Preference number: 1 (lower is better)
Translates to: EPPWIYTALQRSQTR*LSPQRRNRRPGWME
Trigger: TTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGGAGACAGCCAGCGAGTTTGACTTCTTTGAAGAGCTGTATATATCCAGGGTGGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR-3UTR CCA 90 bp CAGCAGGACCGCGTGGCGGATGATGTTGAATGGCAGCTGCCCTGGCTGAGCGCAGTCTTGAGAACAGGCTaGGATCCCAGTGTCCGCATC +
Preference number: 2 (lower is better)
Translates to: QQDRVADDVEWQLPWLSAVLRTG*DPSVRI
Trigger: GATGCGGACACTGGGATCCCAGCCTGTTCTCAAGAC...TGCGCTCAGCCAGGGCAGCTGCCATTCAACATCATCCGCCACGCGGTCCTGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR-3UTR CCA 90 bp CAGCAGGACCGCGTGGCGGATGATGTTGAATGGCAGCTGCCCTGGCTGAGCGCATTGCCAGCCTGTTCCTaGTCCTTCCTCAAACACCAG +
Preference number: 2 (lower is better)
Translates to: QQDRVADDVEWQLPWLSALPACS*SFLKHQ
Trigger: CTGGTGTTTGAGGAAGGACCAGGAACAGGCTGGCAA...TGCGCTCAGCCAGGGCAGCTGCCATTCAACATCATCCGCCACGCGGTCCTGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR CAA 90 bp ACGAAGGAGGCATCCGCGTGCAGCCAGCGTAAGAAGATGTCAGTCTaGAGAACAGGCTGGGATCCCAGTGTCCGCATCAGGATGGGCTCG +
Preference number: 2 (lower is better)
Translates to: TKEASACSQRKKMSV*RTGWDPSVRIRMGS
Trigger: CGAGCCCATCCTGATGCGGACACTGGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTTACGCTGGCTGCACGCGGATGCCTCCTTCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR-3UTR CCA 90 bp TGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGACCTACTGCTACCCTGGTCAGAGTaGCACTGTGCCTGGCATAGC +
Preference number: 2 (lower is better)
Translates to: WRQPNVLAEESPTGEDLLLPWSE*HCAWHS
Trigger: GCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAG...CAGTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp AGAATCGGCGGGCAGCAGGACCGCGTGGCGGATGATGTTGAATGGCAGCTGCCCGGAAGTTGTTCATGGTaGCGGAATAAAGCATCCCAT +
Preference number: 2 (lower is better)
Translates to: RIGGQQDRVADDVEWQLPGSCSW*RNKASH
Trigger: ATGGGATGCTTTATTCCGGCACCATGAACAACTTCC...GGGCAGCTGCCATTCAACATCATCCGCCACGCGGTCCTGCTGCCCGCCGATTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR-3UTR CCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGACTACCCTGGTCAGAGTaGCACTGTGCCTGGCATAGC +
Preference number: 2 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRLPWSE*HCAWHS
Trigger: GCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAG...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp GCCCAGGAAGTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCGGGTCAAAGGGGCTTTaGCCCTTCCCGTCCATGACC +
Preference number: 2 (lower is better)
Translates to: AQEVVHGAGIKHPIDQDSGSKGL*PFPSMT
Trigger: GGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCC...GCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
3UTR-3UTR GCA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTACAAGGCCAGTGGCTTaGTCTGCTCAGCTGCGGATC +
Preference number: 2 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQITRPVA*SAQLRI
Trigger: GATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGT...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTACAAGGCCAGTGGCTTaGTCTGCTCAGCTGCGGATC +
Preference number: 2 (lower is better)
Translates to: VTTESQTATPFMVSWSTFTRPVA*SAQLRI
Trigger: GATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGT...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCCTACCCTGGTCAGAGTaGCACTGTGCCTGGCATAGC +
Preference number: 2 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCLPWSE*HCAWHS
Trigger: GCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAG...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTGGAAGGAGGGTGGGCTaGTGTTCAAAGCAGCAGCTG +
Preference number: 2 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQIGRRVG*CSKQQL
Trigger: CAGCTGCTGCTTTGAACACCAGCCCACCCTCCTTCC...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATGGAAGGAGGGTGGGCTaGTGTTCAAAGCAGCAGCTG +
Preference number: 2 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDGRRVG*CSKQQL
Trigger: CAGCTGCTGCTTTGAACACCAGCCCACCCTCCTTCC...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CAA 90 bp CTCTGCCCACAGGCAATGGCCTATGTAGTCTTCTGTGTTGAGCTCTaGCCAGCCTGTTCCTGGTCCTTCCTCAAACACCAGTCCCAGAGA +
Preference number: 2 (lower is better)
Translates to: LCPQAMAYVVFCVEL*PACSWSFLKHQSQR
Trigger: TCTCTGGGACTGGTGTTTGAGGAAGGACCAGGAACAGGCTGGCAAGAGCTCAACACAGAAGACTACATAGGCCATTGCCTGTGGGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR-3UTR GCA 90 bp CCTCAAAGAAGAAATAGACGACCTGGGTGGATGGAATGGCTGCCACGAAGGAGGTCAGGATGGGCTCGCTaGCCAGGAAGTTGTTCATGG +
Preference number: 2 (lower is better)
Translates to: PQRRNRRPGWMEWLPRRRSGWAR*PGSCSW
Trigger: CCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGA...CCTCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR-3UTR CCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCACAGCCACACCTTTCATaGTCTCCTGGAGCACGTTTG +
Preference number: 2 (lower is better)
Translates to: ANSIETLGKEGGLVFKAAQPHLS*SPGARL
Trigger: CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTG...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCCTCCATAGAGACTCTTaGGAAGGAGGGTGGGCTGGT +
Preference number: 2 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCLHRDS*EGGWAG
Trigger: ACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAG...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp GTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCTGTGTGCTTGGGTCAAAGGGGCTTTaGCCCTTCCCGTCCATGACC +
Preference number: 2 (lower is better)
Translates to: VVHGAGIKHPIDQDSCVLGSKGL*PFPSMT
Trigger: GGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCC...AAGCACACAGCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
3UTR-3UTR GCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTACAAGGCCAGTGGCTTaGTCTGCTCAGCTGCGGATC +
Preference number: 2 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFTRPVA*SAQLRI
Trigger: GATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGT...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGAACAAGGCCAGTGGCTTaGTCTGCTCAGCTGCGGATC +
Preference number: 2 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGTRPVA*SAQLRI
Trigger: GATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGT...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTACAGCCCAATGTGCTTaGAGAAGAGAGTCCCACAGG +
Preference number: 2 (lower is better)
Translates to: VTTESQTATPFMVSWSTFTAQCA*RRESHR
Trigger: CCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGT...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTACAGCCCAATGTGCTTaGAGAAGAGAGTCCCACAGG +
Preference number: 2 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQITAQCA*RRESHR
Trigger: CCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGT...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp TCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGACAGCCCAATGTGCTTaGAGAAGAGAGTCCCACAGG +
Preference number: 2 (lower is better)
Translates to: SPQNPRQPHLSWSPGARLTAQCA*RRESHR
Trigger: CCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGT...CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTCTACCCTGGTCAGAGTaGCACTGTGCCTGGCATAGC +
Preference number: 2 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFLPWSE*HCAWHS
Trigger: GCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAG...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTCAGCCACACCTTTCATaGTCTCCTGGAGCACGTTTG +
Preference number: 2 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQIQPHLS*SPGARL
Trigger: CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTG...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CAA 90 bp GATGGAGTTTGCAGGAATAGCCCCAGCTTGCTCGGATGCTTAGGTTaGTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCT +
Preference number: 2 (lower is better)
Translates to: DGVCRNSPSLLGCLG*SPQNPRQPHLSWSP
Trigger: AGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGACAAACCTAAGCATCCGAGCAAGCTGGGGCTATTCCTGCAAACTCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCGTTCAGGATGGAGTTTaGAGGAATAGCCCCAGCTTG +
Preference number: 2 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCVQDGV*RNSPSL
Trigger: CAAGCTGGGGCTATTCCTGCAAACTCCATCCTGAAC...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp CCTCAAAGAAGAAATAGACGACCTGGGTGGATGGAATGGCTGCCACGAAGGAGGTGCACTCTTCTTAGATaGCTCTGCCCACAGGCAATG +
Preference number: 2 (lower is better)
Translates to: PQRRNRRPGWMEWLPRRRCTLLR*LCPQAM
Trigger: CATTGCCTGTGGGCAGAGGCATCTAAGAAGAGTGCA...CCTCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR-3UTR CCA 90 bp AACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCCTTTCATGGTCTCCTaGAGCACGTTTGTTACAGGA +
Preference number: 2 (lower is better)
Translates to: NTRGQLHRDSWEGGWAGVPFMVS*STFVTG
Trigger: TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGG...AACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCAGCCACACCTTTCATaGTCTCCTGGAGCACGTTTG +
Preference number: 2 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMQPHLS*SPGARL
Trigger: CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTG...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGCACAAGTACAGGTATaGAGACAGCCCAATGTGCTT +
Preference number: 2 (lower is better)
Translates to: VTTESQTATPFMVSWSTFAQVQV*RQPNVL
Trigger: AAGCACATTGGGCTGTCTCCATACCTGTACTTGTGC...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR TCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATGTTAGACTTCAGAGATaGCTTCCCAAACAGTATGGC +
Preference number: 2 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDVRLQR*LPKQYG
Trigger: GCCATACTGTTTGGGAAGTCATCTCTGAAGTCTAAC...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR TCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCACAATCTGTCCAAACTaGAGCAAGAAGGAAGGTGGT +
Preference number: 2 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCTICPN*SKKEGG
Trigger: ACCACCTTCCTTCTTGCTTCAGTTTGGACAGATTGT...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCACAAGGCCAGTGGCTTaGTCTGCTCAGCTGCGGATC +
Preference number: 2 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLTRPVA*SAQLRI
Trigger: GATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGT...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCCTTTCATGGTCTCCTaGAGCACGTTTGTTACAGGA +
Preference number: 2 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMPFMVS*STFVTG
Trigger: TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGG...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CAA 90 bp CAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTaGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTG +
Preference number: 2 (lower is better)
Translates to: QNPRQPHLSWSPGAR*LQEGSWVNQNQRNL
Trigger: CAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAACAGCCCAATGTGCTTaGAGAAGAGAGTCCCACAGG +
Preference number: 2 (lower is better)
Translates to: ALGSIKIKETCLALPVTATAQCA*RRESHR
Trigger: CCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGT...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATAAGCAAGAAGGAAGGTaGTTAGACTTCAGAGATGAC +
Preference number: 2 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDKQEGR*LDFRDD
Trigger: GTCATCTCTGAAGTCTAACCACCTTCCTTCTTGCTT...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCAAGCAAGAAGGAAGGTaGTTAGACTTCAGAGATGAC +
Preference number: 2 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCKQEGR*LDFRDD
Trigger: GTCATCTCTGAAGTCTAACCACCTTCCTTCTTGCTT...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CAA 90 bp ACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGGCTCTaGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCA +
Preference number: 2 (lower is better)
Translates to: TPFMVSWSTFVTGGL*GQSKSKKPVWLFLS
Trigger: TGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR GCA 90 bp CACGTCGTTCTTGCAGACTTGAGCCACCCTGGATATATACAGCTCTTCAAAGAACTTCTTAGATGCCTCTaGCCACAGGCAATGGCCTAT +
Preference number: 2 (lower is better)
Translates to: HVVLADLSHPGYIQLFKELLRCL*PQAMAY
Trigger: ATAGGCCATTGCCTGTGGGCAGAGGCATCTAAGAAG...TTCTTTGAAGAGCTGTATATATCCAGGGTGGCTCAAGTCTGCAAGAACGACGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR-3UTR GCA 90 bp GGATATATACAGCTCTTCAAAGAAGTCAAACTCGCTGGCTGTCTCCTCAAAGAATCTGTGTTGAGCTCTTaGCAGCCTGTTCCTGGTCCT +
Preference number: 2 (lower is better)
Translates to: GYIQLFKEVKLAGCLLKESVLSS*QPVPGP
Trigger: AGGACCAGGAACAGGCTGGCAAGAGCTCAACACAGA...TTCTTTGAGGAGACAGCCAGCGAGTTTGACTTCTTTGAAGAGCTGTATATATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR-3UTR GCA 90 bp CAAACTCGCTGGCTGTCTCCTCAAAGAAGAAATAGACGACCTGGGTGGATGGAAATAAAGCATCCCATCTaGACTCTTCTTAGATGCCTC +
Preference number: 2 (lower is better)
Translates to: QTRWLSPQRRNRRPGWMEIKHPI*TLLRCL
Trigger: GAGGCATCTAAGAAGAGTGCAGATGGGATGCTTTAT...TTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGGAGACAGCCAGCGAGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR-3UTR CCA 90 bp CACGTCGTTCTTGCAGACTTGAGCCACCCTGGATATATACAGCTCTTCAAAGAACCAGGAAGTTGTTCATaGTGCCGGAATAAAGCATCC +
Preference number: 2 (lower is better)
Translates to: HVVLADLSHPGYIQLFKEPGSCS*CRNKAS
Trigger: GGATGCTTTATTCCGGCACCATGAACAACTTCCTGG...TTCTTTGAAGAGCTGTATATATCCAGGGTGGCTCAAGTCTGCAAGAACGACGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR CCA 72 bp GGCGGGCAGCAGGACCGCGTGGCGGATGATGTTGAATaGCAGCTGCCCTGGCTGAGCGCAGAGCAACTGGGC +
Preference number: 3 (lower is better)
Translates to: GGQQDRVADDVE*QLPWLSAEQLG
Trigger: GCCCAGTTGCTCTGCGCTCAGCCAGGGCAGCTGCCATTCAACATCATCCGCCACGCGGTCCTGCTGCCCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR TCA 72 bp GAGTCCCACAGGGGAGGACCTACTGGGTGCTGTAGGTaGCACACGTTAGCAGGAGAGCCTCCTACCCTGGTC +
Preference number: 3 (lower is better)
Translates to: ESHRGGPTGCCR*HTLAGEPPTLV
Trigger: GACCAGGGTAGGAGGCTCTCCTGCTAACGTGTGTCACCTACAGCACCCAGTAGGTCCTCCCCTGTGGGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CCA 72 bp GAGTGGCACTGTGCCTGGCATAGCCAACAAGGCCAGTaGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTG +
Preference number: 3 (lower is better)
Translates to: EWHCAWHSQQGQ*LALLSCGSVSL
Trigger: CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATGCCAGGCACAGTGCCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CCA 72 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTaGCATAGCCAACAAGGCCAGTGGCTTGCTCTGCTC +
Preference number: 3 (lower is better)
Translates to: ESLLPWSEWHCA*HSQQGQWLALL
Trigger: GAGCAGAGCAAGCCACTGGCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CAA 90 bp AGAATCGGCGGGCAGCAGGACCGCGTGGCGGATGATGTTGAATGGCAGCTGCCCAAGAAGATGTCAGTCTaGAGAACAGGCTGGGATCCC +
Preference number: 3 (lower is better)
Translates to: RIGGQQDRVADDVEWQLPKKMSV*RTGWDP
Trigger: GGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTT...GGGCAGCTGCCATTCAACATCATCCGCCACGCGGTCCTGCTGCCCGCCGATTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR GCA 72 bp GCTGGGATCCCAGTGTCCGCATCAGGATGGGCTCGCTaGCCAGGAAGTTGTTCATGGTGCCGGAATAAAGCA +
Preference number: 3 (lower is better)
Translates to: AGIPVSASGWAR*PGSCSWCRNKA
Trigger: TGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGGACACTGGGATCCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR-3UTR CAA 90 bp CGCTGCCCAGGAAGTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGAAGGGTCAAAGGGGCTTaGGCCCTTCCCGTCCATGAC +
Preference number: 3 (lower is better)
Translates to: RCPGSCSWCRNKASHRPRRVKGA*ALPVHD
Trigger: GTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCT...TCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
3UTR TCA 72 bp CATCCGCGTGCAGCCAGCGTAAGAAGATGTCAGTCTTaGGAACAGGCTGGGATCCCAGTGTCCGCATCAGGA +
Preference number: 3 (lower is better)
Translates to: HPRAASVRRCQS*EQAGIPVSASG
Trigger: TCCTGATGCGGACACTGGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTTACGCTGGCTGCACGCGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR CCA 72 bp AGCCAGCGTAAGAAGATGTCAGTCTTGAGAACAGGCTaGGATCCCAGTGTCCGCATCAGGATGGGCTCGCTG +
Preference number: 3 (lower is better)
Translates to: SQRKKMSVLRTG*DPSVRIRMGSL
Trigger: CAGCGAGCCCATCCTGATGCGGACACTGGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTTACGCTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR-3UTR CAA 90 bp CATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCTGTGTGCTTGTGAACAGGGTCAAAGGGGCTTaGGCCCTTCCCGTCCATGAC +
Preference number: 3 (lower is better)
Translates to: HGAGIKHPIDQDSCVLVNRVKGA*ALPVHD
Trigger: GTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCT...GTTCACAAGCACACAGCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
3UTR CCA 72 bp TGTCTCCTCAAAGAAGAAATAGACGACCTGGGTGGATaGAATGGCTGCCACGAAGGAGGCATCCGCGTGCAG +
Preference number: 3 (lower is better)
Translates to: CLLKEEIDDLGG*NGCHEGGIRVQ
Trigger: CTGCACGCGGATGCCTCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGGAGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR CCA 72 bp TGGCTGTCTCCTCAAAGAAGAAATAGACGACCTGGGTaGATGGAATGGCTGCCACGAAGGAGGCATCCGCGT +
Preference number: 3 (lower is better)
Translates to: WLSPQRRNRRPG*MEWLPRRRHPR
Trigger: ACGCGGATGCCTCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGGAGACAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000185137.8
3UTR-3UTR CAA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTCTCCTGGAGCACGTTaGTTACAGGAGGGCTCTTGG +
Preference number: 3 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDSPGAR*LQEGSW
Trigger: CCAAGAGCCCTCCTGTAACAAACGTGCTCCAGGAGA...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR TCA 72 bp CTGCCCACAGGCAATGGCCTATGTAGTCTTCTGTGTTaGGCTCTTGCCAGCCTGTTCCTGGTCCTTCCTCAA +
Preference number: 3 (lower is better)
Translates to: LPTGNGLCSLLC*ALASLFLVLPQ
Trigger: TTGAGGAAGGACCAGGAACAGGCTGGCAAGAGCTCAACACAGAAGACTACATAGGCCATTGCCTGTGGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR GCA 72 bp TCACAGCACAAGTACAGGTATGGAGACAGCCCAATGTaGTTGCAGAAGAGAGTCCCACAGGGGAGGACCTAC +
Preference number: 3 (lower is better)
Translates to: SQHKYRYGDSPM*LQKRVPQGRTY
Trigger: GTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTACTTGTGCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CCA 72 bp AAAGGAAACACAAGGGGCCAACTCCATAGAGACTCTTaGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCAGC +
Preference number: 3 (lower is better)
Translates to: KGNTRGQLHRDS*EGGWAGVQSSS
Trigger: GCTGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CCA 72 bp ACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTaGAGCACGTTTGTTACAGGAGGGCTCTTGGGTCAA +
Preference number: 3 (lower is better)
Translates to: TESQTATPFMVS*STFVTGGLLGQ
Trigger: TTGACCCAAGAGCCCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CCA 72 bp TTGTCACCACAGAATCCCAGACAGCCACACCTTTCATaGTCTCCTGGAGCACGTTTGTTACAGGAGGGCTCT +
Preference number: 3 (lower is better)
Translates to: LSPQNPRQPHLS*SPGARLLQEGS
Trigger: AGAGCCCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CAA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTCTCGGATGCTTAGGTTaGTCACCACAGAATCCCAGA +
Preference number: 3 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQILGCLG*SPQNPR
Trigger: TCTGGGATTCTGTGGTGACAAACCTAAGCATCCGAG...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CAA 90 bp ACTGGTAAAGGAAACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGCTCGGATGCTTAGGTTaGTCACCACAGAATCCCAGA +
Preference number: 3 (lower is better)
Translates to: TGKGNTRGQLHRDSWEGGLGCLG*SPQNPR
Trigger: TCTGGGATTCTGTGGTGACAAACCTAAGCATCCGAG...CCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTTACCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR-3UTR CAA 90 bp ATAAAGCATCCCATCTGCACTCTTCTTAGATGCCTCTGCCCACAGGCAATGGCCAGAGAAATCACTGTCTaGTGCTCACAAACCCTGGGC +
Preference number: 3 (lower is better)
Translates to: IKHPICTLLRCLCPQAMAREITV*CSQTLG
Trigger: GCCCAGGGTTTGTGAGCACAAGACAGTGATTTCTCT...GGCCATTGCCTGTGGGCAGAGGCATCTAAGAAGAGTGCAGATGGGATGCTTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR GCA 72 bp TCTTCTGCAGCAGCTTTTCACCGCCCACGTCGTTCTTaGAGACTTGAGCCACCCTGGATATATACAGCTCTT +
Preference number: 3 (lower is better)
Translates to: SSAAAFHRPRRS*RLEPPWIYTAL
Trigger: AAGAGCTGTATATATCCAGGGTGGCTCAAGTCTGCAAGAACGACGTGGGCGGTGAAAAGCTGCTGCAGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR CCA 72 bp GTAGTCTTCTGTGTTGAGCTCTTGCCAGCCTGTTCCTaGTCCTTCCTCAAACACCAGTCCCAGAGAAATCAC +
Preference number: 3 (lower is better)
Translates to: VVFCVELLPACS*SFLKHQSQRNH
Trigger: GTGATTTCTCTGGGACTGGTGTTTGAGGAAGGACCAGGAACAGGCTGGCAAGAGCTCAACACAGAAGACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR GCA 72 bp GAAGTTGTTCATGGTGCCGGAATAAAGCATCCCATCTaGACTCTTCTTAGATGCCTCTGCCCACAGGCAATG +
Preference number: 3 (lower is better)
Translates to: EVVHGAGIKHPI*TLLRCLCPQAM
Trigger: CATTGCCTGTGGGCAGAGGCATCTAAGAAGAGTGCAGATGGGATGCTTTATTCCGGCACCATGAACAACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR-3UTR CAA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGGTTACAGGAGGGCTCTaGGGTCAATCAAAATCAAAG +
Preference number: 3 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMVTGGL*GQSKSK
Trigger: CTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAAC...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CCA 72 bp TGGTCTCCTGGAGCACGTTTGTTACAGGAGGGCTCTTaGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCT +
Preference number: 3 (lower is better)
Translates to: WSPGARLLQEGS*VNQNQRNLSGS
Trigger: AGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAACGTGCTCCAGGAGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR GCA 72 bp ATAAAGCATCCCATCTGCACTCTTCTTAGATGCCTCTaGCCACAGGCAATGGCCTATGTAGTCTTCTGTGTT +
Preference number: 3 (lower is better)
Translates to: IKHPICTLLRCL*PQAMAYVVFCV
Trigger: AACACAGAAGACTACATAGGCCATTGCCTGTGGGCAGAGGCATCTAAGAAGAGTGCAGATGGGATGCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
3UTR CCA 72 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTaGCTCTTCCTGTCACAGCACAAGTACAGGTATGGA +
Preference number: 3 (lower is better)
Translates to: GLLGQSKSKKPV*LFLSQHKYRYG
Trigger: TCCATACCTGTACTTGTGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CCA 72 bp TGGATATATACAGCTCTTCAAAGAAGTCAAACTCGCTaGCTGTCTCCTCAAAGAAGAAATAGACGACCTGGG +
Preference number: 3 (lower is better)
Translates to: WIYTALQRSQTR*LSPQRRNRRPG
Trigger: CCCAGGTCGTCTATTTCTTCTTTGAGGAGACAGCCAGCGAGTTTGACTTCTTTGAAGAGCTGTATATATCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
CDS-3UTR CCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGGGGGGCTCCTGGCCATaGGGCCACGGGTGCATACCC +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLGGSWP*GHGCIP
Trigger: GGGTATGCACCCGTGGCCCCATGGCCAGGAGCCCCC...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
64% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCAGCATCCCACAGCCCTaGACCTTACCCCGAGCCCGC +
Preference number: 4 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGSIPQP*TLPRAR
Trigger: GCGGGCTCGGGGTAAGGTTCAGGGCTGTGGGATGCT...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGCCGCAGCGCCCCCAGTaGGGAAGCGAGGAGGAGAGT +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLPQRPQ*GSEEES
Trigger: ACTCTCCTCCTCGCTTCCCCACTGGGGGCGCTGCGG...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGAGCATCCCACAGCCCTaGACCTTACCCCGAGCCCGC +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLSIPQP*TLPRAR
Trigger: GCGGGCTCGGGGTAAGGTTCAGGGCTGTGGGATGCT...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCTGGGCGGGGGCCAGCTaGAGGTTTCGAACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGWAGAS*RFRTGS
Trigger: TGAGCCTGTTCGAAACCTGCAGCTGGCCCCCGCCCA...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGCAGAGGAGGGGCCCATaGAGCAACTGCCTGGCCTCG +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLQRRGP*SNCLAS
Trigger: CGAGGCCAGGCAGTTGCTCCATGGGCCCCTCCTCTG...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCAGGGGGCTCCTGGCCATaGGGCCACGGGTGCATACCC +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAAGGSWP*GHGCIP
Trigger: GGGTATGCACCCGTGGCCCCATGGCCAGGAGCCCCC...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCCTGGCAGAGGTCCTGTaGTCCTTGGAGGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGLAEVL*SLEGWR
Trigger: CCTCCAGCCCTCCAAGGACCACAGGACCTCTGCCAG...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCATCAAGGCCCCGAGCTaGCTCCACAGCAAGCCGTGT +
Preference number: 4 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGIKAPS*LHSKPC
Trigger: ACACGGCTTGCTGTGGAGTCAGCTCGGGGCCTTGAT...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCAGACTCCATGAGTCCTaGCCCAGGGATGGTAGGGCC +
Preference number: 4 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGRLHES*PRDGRA
Trigger: GGCCCTACCATCCCTGGGCCAGGACTCATGGAGTCT...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCGGCAGCAGGACCGCGTaGCGGATGATGTTGAATGGC +
Preference number: 4 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGGSRTA*RMMLNG
Trigger: GCCATTCAACATCATCCGCCACGCGGTCCTGCTGCC...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGCAAACACTGCACCCTaGGCGGGGGCCAGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGEANTAP*AGASCR
Trigger: CCTGCAGCTGGCCCCCGCCCAGGGTGCAGTGTTTGC...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTGGGGGCTCCTGGCCATaGGGCCACGGGTGCATACCC +
Preference number: 4 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQIGGSWP*GHGCIP
Trigger: GGGTATGCACCCGTGGCCCCATGGCCAGGAGCCCCC...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCAGCCAGTGCTGACAGGTaGGGGCAGGGCAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAAASADR*GQGSSR
Trigger: CCTGGAGCTGCCCTGCCCCCACCTGTCAGCACTGGC...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGTCCAGCGCCAGGGGCTaGTCCTGGCTGTCTACCCAA +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLSSARG*SWLSTQ
Trigger: TTGGGTAGACAGCCAGGACCAGCCCCTGGCGCTGGA...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGAACCGCTGGGCAGCCATaGAAGCTCCGCCTCCGACCC +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRTAGQP*KLRLRP
Trigger: GGGTCGGAGGCGGAGCTTCCATGGCTGCCCAGCGGT...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGACCGCAGCGCCCCCAGTaGGGAAGCGAGGAGGAGAGT +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRPQRPQ*GSEEES
Trigger: ACTCTCCTCCTCGCTTCCCCACTGGGGGCGCTGCGG...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp ATGTCAGTCTTGAGAACAGGCTGGGATCCCAGTGTCCGCATCAGGATGGGCTCGACGCAGGAGACTCCATaGGTCCTGGCCCAGGGATGG +
Preference number: 4 (lower is better)
Translates to: MSVLRTGWDPSVRIRMGSTQETP*VLAQGW
Trigger: CCATCCCTGGGCCAGGACTCATGGAGTCTCCTGCGT...CGAGCCCATCCTGATGCGGACACTGGGATCCCAGCCTGTTCTCAAGACTGACAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
CDS-3UTR TCA 90 bp CCCAGTGTCCGCATCAGGATGGGCTCGCTGCCCAGGAAGTTGTTCATGGTGCCGAGAAGCAGGTGGCAGTaGTGGCAGCAGGAAGAGTTG +
Preference number: 4 (lower is better)
Translates to: PSVRIRMGSLPRKLFMVPRSRWQ*WQQEEL
Trigger: CAACTCTTCCTGCTGCCATCACTGCCACCTGCTTCT...CGGCACCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGGACACTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
CDS-3UTR TCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGATCAAGGCCCCGAGCTaGCTCCACAGCAAGCCGTGT +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLIKAPS*LHSKPC
Trigger: ACACGGCTTGCTGTGGAGTCAGCTCGGGGCCTTGAT...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAAGCATCCCACAGCCCTaGACCTTACCCCGAGCCCGC +
Preference number: 4 (lower is better)
Translates to: TGMETAQCACRRESHRGGSIPQP*TLPRAR
Trigger: GCGGGCTCGGGGTAAGGTTCAGGGCTGTGGGATGCT...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp TGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGACCTACTGGGCACCACAGCCTTGTaGAGGGACCCCGTGGAGGTA +
Preference number: 4 (lower is better)
Translates to: WRQPNVLAEESPTGEDLLGTTAL*RDPVEV
Trigger: TACCTCCACGGGGTCCCTGCACAAGGCTGTGGTGCC...CAGTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCACCATGGGGCCACGGGTaGATACCCACTCCGGGTTGC +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAAPWGHG*IPTPGC
Trigger: GCAACCCGGAGTGGGTATGCACCCGTGGCCCCATGG...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGGGAGGTGCTGGTCCCTaGTCAGTGGAGCCTTTTCCC +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLGGAGP*SVEPFP
Trigger: GGGAAAAGGCTCCACTGAGCAGGGACCAGCACCTCC...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CAGGCTGGGATCCCAGTGTCCGCATCAGGATGGGCTCGCTGCCCAGGAAGTTGTCGGAGGCCTTTTTGTTaGAAGAAGCTGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: QAGIPVSASGWARCPGSCRRPFC*KKLRAL
Trigger: CAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCG...ACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGGACACTGGGATCCCAGCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
CDS-3UTR CCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGGAATGGCAGCTGCCCTaGCTGAGCGCAGAGCAACTG +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLEWQLP*LSAEQL
Trigger: CAGTTGCTCTGCGCTCAGCCAGGGCAGCTGCCATTC...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGGGCAGCAGGACCGCGTaGCGGATGATGTTGAATGGC +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLGSRTA*RMMLNG
Trigger: GCCATTCAACATCATCCGCCACGCGGTCCTGCTGCC...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGAGACTGCTGAGCTCCTaGTCCCGCCAACCTGCCACT +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLRLLSS*SRQPAT
Trigger: AGTGGCAGGTTGGCGGGACCAGGAGCTCAGCAGTCT...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGCAGAGGAGGGGCCCATaGAGCAACTGCCTGGCCTCG +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGEQRRGP*SNCLAS
Trigger: CGAGGCCAGGCAGTTGCTCCATGGGCCCCTCCTCTG...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATGCCAGTGCTGACAGGTaGGGGCAGGGCAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDASADR*GQGSSR
Trigger: CCTGGAGCTGCCCTGCCCCCACCTGTCAGCACTGGC...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGACCGCTGGGCAGCCATaGAAGCTCCGCCTCCGACCC +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRTAGQP*KLRLRP
Trigger: GGGTCGGAGGCGGAGCTTCCATGGCTGCCCAGCGGT...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCCCGCAGCGCCCCCAGTaGGGAAGCGAGGAGGAGAGT +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCPQRPQ*GSEEES
Trigger: ACTCTCCTCCTCGCTTCCCCACTGGGGGCGCTGCGG...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAACGCAGGAGACTCCATaGGTCCTGGCCCAGGGATGG +
Preference number: 4 (lower is better)
Translates to: TGMETAQCACRRESHRGGTQETP*VLAQGW
Trigger: CCATCCCTGGGCCAGGACTCATGGAGTCTCCTGCGT...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCAACGCAGGAGACTCCATaGGTCCTGGCCCAGGGATGG +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAATQETP*VLAQGW
Trigger: CCATCCCTGGGCCAGGACTCATGGAGTCTCCTGCGT...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCAGAAGCAGGTGGCAGTaGTGGCAGCAGGAAGAGTTG +
Preference number: 4 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGRSRWQ*WQQEEL
Trigger: CAACTCTTCCTGCTGCCATCACTGCCACCTGCTTCT...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GATCCCAGTGTCCGCATCAGGATGGGCTCGCTGCCCAGGAAGTTGTTCATGGTGCTCCAGCATGGTATTTaGCTCTGGGCATGGGCCCCT +
Preference number: 4 (lower is better)
Translates to: DPSVRIRMGSLPRKLFMVLQHGI*LWAWAP
Trigger: AGGGGCCCATGCCCAGAGTCAAATACCATGCTGGAG...CACCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGGACACTGGGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
CDS-3UTR TCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATGTAAGAGGCCAGTGCTaGCAGGTGGGGGCAGGGCAG +
Preference number: 4 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDVRGQC*QVGAGQ
Trigger: CTGCCCTGCCCCCACCTGTCAGCACTGGCCTCTTAC...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCGTAAGAGGCCAGTGCTaGCAGGTGGGGGCAGGGCAG +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCVRGQC*QVGAGQ
Trigger: CTGCCCTGCCCCCACCTGTCAGCACTGGCCTCTTAC...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGGTAAGAGGCCAGTGCTaGCAGGTGGGGGCAGGGCAG +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRVRGQC*QVGAGQ
Trigger: CTGCCCTGCCCCCACCTGTCAGCACTGGCCTCTTAC...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGGCACCACAGCCTTGTaGAGGGACCCCGTGGAGGTA +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGEGTTAL*RDPVEV
Trigger: TACCTCCACGGGGTCCCTGCACAAGGCTGTGGTGCC...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGTGGGCGGGGGCCAGCTaGAGGTTTCGAACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGEWAGAS*RFRTGS
Trigger: TGAGCCTGTTCGAAACCTGCAGCTGGCCCCCGCCCA...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGCCATGGGGCCACGGGTaGATACCCACTCCGGGTTGC +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRPWGHG*IPTPGC
Trigger: GCAACCCGGAGTGGGTATGCACCCGTGGCCCCATGG...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGACCTACTGAGACTCCATGAGTCCTaGCCCAGGGATGGTAGGGCC +
Preference number: 4 (lower is better)
Translates to: WRQPNVLAEESPTGEDLLRLHES*PRDGRA
Trigger: GGCCCTACCATCCCTGGGCCAGGACTCATGGAGTCT...CAGTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AGCTGTGTGCTTGTGAACAGGGTCAAAGGGGCTTTGGCCCTTCCCGTCCATGACAGACTCCATGAGTCCTaGCCCAGGGATGGTAGGGCC +
Preference number: 4 (lower is better)
Translates to: SCVLVNRVKGALALPVHDRLHES*PRDGRA
Trigger: GGCCCTACCATCCCTGGGCCAGGACTCATGGAGTCT...GTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCTGTTCACAAGCACACAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR CCA 90 bp GAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGCAAACACTGCACCCTaGGCGGGGGCCAGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: ESQTATPFMVSWSTFVTGANTAP*AGASCR
Trigger: CCTGCAGCTGGCCCCCGCCCAGGGTGCAGTGTTTGC...TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGGCAAACACTGCACCCTaGGCGGGGGCCAGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMANTAP*AGASCR
Trigger: CCTGCAGCTGGCCCCCGCCCAGGGTGCAGTGTTTGC...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGGGGGCTCCTGGCCATaGGGCCACGGGTGCATACCC +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYGGSWP*GHGCIP
Trigger: GGGTATGCACCCGTGGCCCCATGGCCAGGAGCCCCC...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGACCGCTGGGCAGCCATaGAAGCTCCGCCTCCGACCC +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMTAGQP*KLRLRP
Trigger: GGGTCGGAGGCGGAGCTTCCATGGCTGCCCAGCGGT...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCACTGGCAGAGGTCCTGTaGTCCTTGGAGGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAALAEVL*SLEGWR
Trigger: CCTCCAGCCCTCCAAGGACCACAGGACCTCTGCCAG...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCACGCAGGAGACTCCATaGGTCCTGGCCCAGGGATGG +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCTQETP*VLAQGW
Trigger: CCATCCCTGGGCCAGGACTCATGGAGTCTCCTGCGT...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCAGAGCAACTGGGCTTTaGGGAAGGTGGTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGRATGL*GRWSTS
Trigger: AGAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCT...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGAAGGCTGCAGAGTCTTaGTTCAGGGTCCCAGGCACA +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLKAAES*FRVPGT
Trigger: TGTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTT...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCCATGGGGCCACGGGTaGATACCCACTCCGGGTTGC +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMPWGHG*IPTPGC
Trigger: GCAACCCGGAGTGGGTATGCACCCGTGGCCCCATGG...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTGGAGGTGCTGGTCCCTaGTCAGTGGAGCCTTTTCCC +
Preference number: 4 (lower is better)
Translates to: NTRGQLHRDSWEGGWAGVGGAGP*SVEPFP
Trigger: GGGAAAAGGCTCCACTGAGCAGGGACCAGCACCTCC...AACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGAAGACTCCATGAGTCCTaGCCCAGGGATGGTAGGGCC +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRRLHES*PRDGRA
Trigger: GGCCCTACCATCCCTGGGCCAGGACTCATGGAGTCT...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGAGGGTCAAAGGGGCTTTaGCCCTTCCCGTCCATGACC +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRGSKGL*PFPSMT
Trigger: GGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCC...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGGTCTTGAGAACAGGCTaGGATCCCAGTGTCCGCATC +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLVLRTG*DPSVRI
Trigger: GATGCGGACACTGGGATCCCAGCCTGTTCTCAAGAC...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCAATAGACGACCTGGGTaGATGGAATGGCTGCCACGA +
Preference number: 4 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGNRRPG*MEWLPR
Trigger: TCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATT...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAAGACTGCTGAGCTCCTaGTCCCGCCAACCTGCCACT +
Preference number: 4 (lower is better)
Translates to: TGMETAQCACRRESHRGGRLLSS*SRQPAT
Trigger: AGTGGCAGGTTGGCGGGACCAGGAGCTCAGCAGTCT...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCAAACACTGCACCCTaGGCGGGGGCCAGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYANTAP*AGASCR
Trigger: CCTGCAGCTGGCCCCCGCCCAGGGTGCAGTGTTTGC...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGACCTACTGAGGGCAGCTCCAGGATaGAGTTGGGGACTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: WRQPNVLAEESPTGEDLLRAAPG*SWGLSG
Trigger: TCCTGACAGTCCCCAACTCCATCCTGGAGCTGCCCT...CAGTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCCAGTGCTGACAGGTaGGGGCAGGGCAGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYASADR*GQGSSR
Trigger: CCTGGAGCTGCCCTGCCCCCACCTGTCAGCACTGGC...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTCTGGCAGAGGTCCTGTaGTCCTTGGAGGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: VTTESQTATPFMVSWSTFLAEVL*SLEGWR
Trigger: CCTCCAGCCCTCCAAGGACCACAGGACCTCTGCCAG...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp AACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCTCCAGCATGGTATTTaGCTCTGGGCATGGGCCCCT +
Preference number: 4 (lower is better)
Translates to: NTRGQLHRDSWEGGWAGVLQHGI*LWAWAP
Trigger: AGGGGCCCATGCCCAGAGTCAAATACCATGCTGGAG...AACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCACTCCAGCATGGTATTTaGCTCTGGGCATGGGCCCCT +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAALQHGI*LWAWAP
Trigger: AGGGGCCCATGCCCAGAGTCAAATACCATGCTGGAG...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGAGAGCAACTGGGCTTTaGGGAAGGTGGTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLRATGL*GRWSTS
Trigger: AGAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCT...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTATCAAGGCCCCGAGCTaGCTCCACAGCAAGCCGTGT +
Preference number: 4 (lower is better)
Translates to: VTTESQTATPFMVSWSTFIKAPS*LHSKPC
Trigger: ACACGGCTTGCTGTGGAGTCAGCTCGGGGCCTTGAT...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp ACTGGTAAAGGAAACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGGGCACCACAGCCTTGTaGAGGGACCCCGTGGAGGTA +
Preference number: 4 (lower is better)
Translates to: TGKGNTRGQLHRDSWEGGGTTAL*RDPVEV
Trigger: TACCTCCACGGGGTCCCTGCACAAGGCTGTGGTGCC...CCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTTACCAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp TGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGACCTACTGCCACGAGATAAGCACTaGTGTCCTGAGGCACCACAG +
Preference number: 4 (lower is better)
Translates to: WRQPNVLAEESPTGEDLLPRDKH*CPEAPQ
Trigger: CTGTGGTGCCTCAGGACAGCAGTGCTTATCTCGTGG...CAGTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGATGGGCGGGGGCCAGCTaGAGGTTTCGAACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: ESQTATPFMVSWSTFVTGWAGAS*RFRTGS
Trigger: TGAGCCTGTTCGAAACCTGCAGCTGGCCCCCGCCCA...TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAATACCCACTCCGGGTTaGCGCGTTCCATGTCCTGCT +
Preference number: 4 (lower is better)
Translates to: TGMETAQCACRRESHRGGIPTPG*RVPCPA
Trigger: AGCAGGACATGGAACGCGGCAACCCGGAGTGGGTAT...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTATACCCACTCCGGGTTaGCGCGTTCCATGTCCTGCT +
Preference number: 4 (lower is better)
Translates to: NTRGQLHRDSWEGGWAGVIPTPG*RVPCPA
Trigger: AGCAGGACATGGAACGCGGCAACCCGGAGTGGGTAT...AACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCAATACCCACTCCGGGTTaGCGCGTTCCATGTCCTGCT +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAAIPTPG*RVPCPA
Trigger: AGCAGGACATGGAACGCGGCAACCCGGAGTGGGTAT...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGGAGGTGCTGGTCCCTaGTCAGTGGAGCCTTTTCCC +
Preference number: 4 (lower is better)
Translates to: VTTESQTATPFMVSWSTFGGAGP*SVEPFP
Trigger: GGGAAAAGGCTCCACTGAGCAGGGACCAGCACCTCC...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGGGGTCAAAGGGGCTTTaGCCCTTCCCGTCCATGACC +
Preference number: 4 (lower is better)
Translates to: SPQNPRQPHLSWSPGARLGSKGL*PFPSMT
Trigger: GGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCC...CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCGGGTCAAAGGGGCTTTaGCCCTTCCCGTCCATGACC +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCGSKGL*PFPSMT
Trigger: GGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCC...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAGACGACCTGGGTGGATaGAATGGCTGCCACGAAGGA +
Preference number: 4 (lower is better)
Translates to: TGMETAQCACRRESHRGGDDLGG*NGCHEG
Trigger: TCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTC...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATGAATGGCAGCTGCCCTaGCTGAGCGCAGAGCAACTG +
Preference number: 4 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDEWQLP*LSAEQL
Trigger: CAGTTGCTCTGCGCTCAGCCAGGGCAGCTGCCATTC...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGGGCAGCAGGACCGCGTaGCGGATGATGTTGAATGGC +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRGSRTA*RMMLNG
Trigger: GCCATTCAACATCATCCGCCACGCGGTCCTGCTGCC...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGGCAGCAGGACCGCGTaGCGGATGATGTTGAATGGC +
Preference number: 4 (lower is better)
Translates to: VTTESQTATPFMVSWSTFGSRTA*RMMLNG
Trigger: GCCATTCAACATCATCCGCCACGCGGTCCTGCTGCC...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTAGACTGCTGAGCTCCTaGTCCCGCCAACCTGCCACT +
Preference number: 4 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQIRLLSS*SRQPAT
Trigger: AGTGGCAGGTTGGCGGGACCAGGAGCTCAGCAGTCT...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGACAGAGGAGGGGCCCATaGAGCAACTGCCTGGCCTCG +
Preference number: 4 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGQRRGP*SNCLAS
Trigger: CGAGGCCAGGCAGTTGCTCCATGGGCCCCTCCTCTG...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATCAGAGGAGGGGCCCATaGAGCAACTGCCTGGCCTCG +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYQRRGP*SNCLAS
Trigger: CGAGGCCAGGCAGTTGCTCCATGGGCCCCTCCTCTG...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAGGGGGCTCCTGGCCATaGGGCCACGGGTGCATACCC +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTAGGSWP*GHGCIP
Trigger: GGGTATGCACCCGTGGCCCCATGGCCAGGAGCCCCC...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGTCCAGCGCCAGGGGCTaGTCCTGGCTGTCTACCCAA +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMSSARG*SWLSTQ
Trigger: TTGGGTAGACAGCCAGGACCAGCCCCTGGCGCTGGA...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGACCGCTGGGCAGCCATaGAAGCTCCGCCTCCGACCC +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQTAGQP*KLRLRP
Trigger: GGGTCGGAGGCGGAGCTTCCATGGCTGCCCAGCGGT...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGACGGCATCTACGTCACTaGCAGAGGTCCTGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRRHLRH*QRSCGP
Trigger: AGGACCACAGGACCTCTGCCAGTGACGTAGATGCCG...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGAACGCAGGAGACTCCATaGGTCCTGGCCCAGGGATGG +
Preference number: 4 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGTQETP*VLAQGW
Trigger: CCATCCCTGGGCCAGGACTCATGGAGTCTCCTGCGT...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGAGAAGCAGGTGGCAGTaGTGGCAGCAGGAAGAGTTG +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGERSRWQ*WQQEEL
Trigger: CAACTCTTCCTGCTGCCATCACTGCCACCTGCTTCT...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp TCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGCTCCAGCATGGTATTTaGCTCTGGGCATGGGCCCCT +
Preference number: 4 (lower is better)
Translates to: SPQNPRQPHLSWSPGARLLQHGI*LWAWAP
Trigger: AGGGGCCCATGCCCAGAGTCAAATACCATGCTGGAG...CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGAAGGCTGCAGAGTCTTaGTTCAGGGTCCCAGGCACA +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGEKAAES*FRVPGT
Trigger: TGTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTT...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGGTAAGAGGCCAGTGCTaGCAGGTGGGGGCAGGGCAG +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQVRGQC*QVGAGQ
Trigger: CTGCCCTGCCCCCACCTGTCAGCACTGGCCTCTTAC...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACGTAAGAGGCCAGTGCTaGCAGGTGGGGGCAGGGCAG +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHVRGQC*QVGAGQ
Trigger: CTGCCCTGCCCCCACCTGTCAGCACTGGCCTCTTAC...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGTCAGGATGGGCTCGCTaGCCAGGAAGTTGTTCATGG +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGESGWAR*PGSCSW
Trigger: CCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGA...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAGTGGTCCACTTCTTCTaGAGCAGCTTTTCACCGCCC +
Preference number: 4 (lower is better)
Translates to: TGMETAQCACRRESHRGGVVHFF*SSFSPP
Trigger: GGGCGGTGAAAAGCTGCTGCAGAAGAAGTGGACCAC...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCACCACGAGATAAGCACTaGTGTCCTGAGGCACCACAG +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAAPRDKH*CPEAPQ
Trigger: CTGTGGTGCCTCAGGACAGCAGTGCTTATCTCGTGG...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGATGGGCGGGGGCCAGCTaGAGGTTTCGAACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGWAGAS*RFRTGS
Trigger: TGAGCCTGTTCGAAACCTGCAGCTGGCCCCCGCCCA...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTATACCCACTCCGGGTTaGCGCGTTCCATGTCCTGCT +
Preference number: 4 (lower is better)
Translates to: VTTESQTATPFMVSWSTFIPTPG*RVPCPA
Trigger: AGCAGGACATGGAACGCGGCAACCCGGAGTGGGTAT...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACCCATGGGGCCACGGGTaGATACCCACTCCGGGTTGC +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHPWGHG*IPTPGC
Trigger: GCAACCCGGAGTGGGTATGCACCCGTGGCCCCATGG...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGGGAGGTGCTGGTCCCTaGTCAGTGGAGCCTTTTCCC +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMGGAGP*SVEPFP
Trigger: GGGAAAAGGCTCCACTGAGCAGGGACCAGCACCTCC...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CAGGCTGGGATCCCAGTGTCCGCATCAGGATGGGCTCGCTGCCCAGGAAGTTGTCCTTGTCTATCAAGATaGGCAACAGGAGGGAATCTT +
Preference number: 4 (lower is better)
Translates to: QAGIPVSASGWARCPGSCPCLSR*ATGGNL
Trigger: AAGATTCCCTCCTGTTGCCCATCTTGATAGACAAGG...ACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGGACACTGGGATCCCAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
CDS-3UTR CCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGGGGTCAAAGGGGCTTTaGCCCTTCCCGTCCATGACC +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMGSKGL*PFPSMT
Trigger: GGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCC...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AAAGAAGAAATAGACGACCTGGGTGGATGGAATGGCTGCCACGAAGGAGGCATCGGGTCAAAGGGGCTTTaGCCCTTCCCGTCCATGACC +
Preference number: 4 (lower is better)
Translates to: KEEIDDLGGWNGCHEGGIGSKGL*PFPSMT
Trigger: GGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCC...GATGCCTCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
CDS-3UTR CCA 90 bp GAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAAGACTGCTGAGCTCCTaGTCCCGCCAACCTGCCACT +
Preference number: 4 (lower is better)
Translates to: ESQTATPFMVSWSTFVTGRLLSS*SRQPAT
Trigger: AGTGGCAGGTTGGCGGGACCAGGAGCTCAGCAGTCT...TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAGAGGAGGGGCCCATaGAGCAACTGCCTGGCCTCG +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQQRRGP*SNCLAS
Trigger: CGAGGCCAGGCAGTTGCTCCATGGGCCCCTCCTCTG...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAGCAAACACTGCACCCTaGGCGGGGGCCAGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTAANTAP*AGASCR
Trigger: CCTGCAGCTGGCCCCCGCCCAGGGTGCAGTGTTTGC...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCACACTGCAATTGGCCCTaGGAACTCTCCAGATGCCTC +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAAHCNWP*ELSRCL
Trigger: GAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTG...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGACACTGCAATTGGCCCTaGGAACTCTCCAGATGCCTC +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRHCNWP*ELSRCL
Trigger: GAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTG...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCCACAGTGAGGGTCCCTaGCAAGCACACAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCHSEGP*QAHSPH
Trigger: GTGTGGACTGTGTGCTTGCCAGGGACCCTCACTGTG...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGAGGGCAGCTCCAGGATaGAGTTGGGGACTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRRAAPG*SWGLSG
Trigger: TCCTGACAGTCCCCAACTCCATCCTGGAGCTGCCCT...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTAGGGCAGCTCCAGGATaGAGTTGGGGACTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: VTTESQTATPFMVSWSTFRAAPG*SWGLSG
Trigger: TCCTGACAGTCCCCAACTCCATCCTGGAGCTGCCCT...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGAGGCTTCTGAGATTTTaGCTCGGCCATGACTCCAGT +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLRLLRF*LGHDSS
Trigger: ACTGGAGTCATGGCCGAGCCAAAATCTCAGAAGCCT...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATTCCAGCGCCAGGGGCTaGTCCTGGCTGTCTACCCAA +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYSSARG*SWLSTQ
Trigger: TTGGGTAGACAGCCAGGACCAGCCCCTGGCGCTGGA...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCACCGCAGCGCCCCCAGTaGGGAAGCGAGGAGGAGAGT +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTAPQRPQ*GSEEES
Trigger: ACTCTCCTCCTCGCTTCCCCACTGGGGGCGCTGCGG...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTCTGGCAGAGGTCCTGTaGTCCTTGGAGGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFLAEVL*SLEGWR
Trigger: CCTCCAGCCCTCCAAGGACCACAGGACCTCTGCCAG...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGCGGCATCTACGTCACTaGCAGAGGTCCTGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRRHLRH*QRSCGP
Trigger: AGGACCACAGGACCTCTGCCAGTGACGTAGATGCCG...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAAGAGCAACTGGGCTTTaGGGAAGGTGGTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: TGMETAQCACRRESHRGGRATGL*GRWSTS
Trigger: AGAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCT...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGAAGAGCAACTGGGCTTTaGGGAAGGTGGTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRRATGL*GRWSTS
Trigger: AGAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCT...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATAAGGCTGCAGAGTCTTaGTTCAGGGTCCCAGGCACA +
Preference number: 4 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDKAAES*FRVPGT
Trigger: TGTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTT...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAAGCATCCCACAGCCCTaGACCTTACCCCGAGCCCGC +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTASIPQP*TLPRAR
Trigger: GCGGGCTCGGGGTAAGGTTCAGGGCTGTGGGATGCT...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTCAGGATGGGCTCGCTaGCCAGGAAGTTGTTCATGG +
Preference number: 4 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDSGWAR*PGSCSW
Trigger: CCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGA...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTTCAGGATGGGCTCGCTaGCCAGGAAGTTGTTCATGG +
Preference number: 4 (lower is better)
Translates to: VTTESQTATPFMVSWSTFSGWAR*PGSCSW
Trigger: CCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGA...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATGTGGTCCACTTCTTCTaGAGCAGCTTTTCACCGCCC +
Preference number: 4 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDVVHFF*SSFSPP
Trigger: GGGCGGTGAAAAGCTGCTGCAGAAGAAGTGGACCAC...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACGGCACCACAGCCTTGTaGAGGGACCCCGTGGAGGTA +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHGTTAL*RDPVEV
Trigger: TACCTCCACGGGGTCCCTGCACAAGGCTGTGGTGCC...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGCCACGAGATAAGCACTaGTGTCCTGAGGCACCACAG +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRPRDKH*CPEAPQ
Trigger: CTGTGGTGCCTCAGGACAGCAGTGCTTATCTCGTGG...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACTGGGCGGGGGCCAGCTaGAGGTTTCGAACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHWAGAS*RFRTGS
Trigger: TGAGCCTGTTCGAAACCTGCAGCTGGCCCCCGCCCA...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCATGGGAACTCTCCAGATaGCTCCAGAGAAGCCTGCAA +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAAWELSR*LQRSLQ
Trigger: TTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCA...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATGGGAACTCTCCAGATaGCTCCAGAGAAGCCTGCAA +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRWELSR*LQRSLQ
Trigger: TTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCA...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATAGACTCCATGAGTCCTaGCCCAGGGATGGTAGGGCC +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYRLHES*PRDGRA
Trigger: GGCCCTACCATCCCTGGGCCAGGACTCATGGAGTCT...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGCGGAGGCCTTTTTGTTaGAAGAAGCTGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRRRPFC*KKLRAL
Trigger: CAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCG...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCCCAGGAAGTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCCGGAGGCCTTTTTGTTaGAAGAAGCTGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: AQEVVHGAGIKHPIDQDSRRPFC*KKLRAL
Trigger: CAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCG...GCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR CCA 90 bp AGAAGAAATAGACGACCTGGGTGGATGGAATGGCTGCCACGAAGGAGGCATCCGGGGATTCCTGGGTTCTaGATATTCAAGGCCAGGACG +
Preference number: 4 (lower is better)
Translates to: RRNRRPGWMEWLPRRRHPGIPGF*IFKART
Trigger: CGTCCTGGCCTTGAATATCCAGAACCCAGGAATCCC...CGGATGCCTCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
CDS-3UTR CCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGGGTCAAAGGGGCTTTaGCCCTTCCCGTCCATGACC +
Preference number: 4 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFGSKGL*PFPSMT
Trigger: GGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCC...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGGTCTTGAGAACAGGCTaGGATCCCAGTGTCCGCATC +
Preference number: 4 (lower is better)
Translates to: SPQNPRQPHLSWSPGARLVLRTG*DPSVRI
Trigger: GATGCGGACACTGGGATCCCAGCCTGTTCTCAAGAC...CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGGACGACCTGGGTGGATaGAATGGCTGCCACGAAGGA +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMDDLGG*NGCHEG
Trigger: TCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTC...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ACTGGTAAAGGAAACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGGACGACCTGGGTGGATaGAATGGCTGCCACGAAGGA +
Preference number: 4 (lower is better)
Translates to: TGKGNTRGQLHRDSWEGGDDLGG*NGCHEG
Trigger: TCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTC...CCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTTACCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAAATAGACGACCTGGGTaGATGGAATGGCTGCCACGA +
Preference number: 4 (lower is better)
Translates to: TGMETAQCACRRESHRGGNRRPG*MEWLPR
Trigger: TCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATT...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGAATAGACGACCTGGGTaGATGGAATGGCTGCCACGA +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGENRRPG*MEWLPR
Trigger: TCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATT...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGAAGACTGCTGAGCTCCTaGTCCCGCCAACCTGCCACT +
Preference number: 4 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGRLLSS*SRQPAT
Trigger: AGTGGCAGGTTGGCGGGACCAGGAGCTCAGCAGTCT...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAAGATACATGACCACATaGCTGCTCCCATCAAGGCCC +
Preference number: 4 (lower is better)
Translates to: TGMETAQCACRRESHRGGRYMTT*LLPSRP
Trigger: GGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCT...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCAAGATACATGACCACATaGCTGCTCCCATCAAGGCCC +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAARYMTT*LLPSRP
Trigger: GGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCT...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGAAGATACATGACCACATaGCTGCTCCCATCAAGGCCC +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRRYMTT*LLPSRP
Trigger: GGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCT...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGCACTGCAATTGGCCCTaGGAACTCTCCAGATGCCTC +
Preference number: 4 (lower is better)
Translates to: SPQNPRQPHLSWSPGARLHCNWP*ELSRCL
Trigger: GAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTG...CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGACACAGTGAGGGTCCCTaGCAAGCACACAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: ESQTATPFMVSWSTFVTGHSEGP*QAHSPH
Trigger: GTGTGGACTGTGTGCTTGCCAGGGACCCTCACTGTG...TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCAGCTCCAGGATGGAGTTaGGGACTGTCAGGACTTCTT +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAAAPGWS*GLSGLL
Trigger: AAGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGC...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGCTCCAGGATGGAGTTaGGGACTGTCAGGACTTCTT +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGEAPGWS*GLSGLL
Trigger: AAGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGC...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAGCTCCAGGATGGAGTTaGGGACTGTCAGGACTTCTT +
Preference number: 4 (lower is better)
Translates to: TGMETAQCACRRESHRGGAPGWS*GLSGLL
Trigger: AAGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGC...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTGCTCCAGGATGGAGTTaGGGACTGTCAGGACTTCTT +
Preference number: 4 (lower is better)
Translates to: NTRGQLHRDSWEGGWAGVAPGWS*GLSGLL
Trigger: AAGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGC...AACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGACCTACTGAGGCTTCTGAGATTTTaGCTCGGCCATGACTCCAGT +
Preference number: 4 (lower is better)
Translates to: WRQPNVLAEESPTGEDLLRLLRF*LGHDSS
Trigger: ACTGGAGTCATGGCCGAGCCAAAATCTCAGAAGCCT...CAGTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCACCGCTGGGCAGCCATaGAAGCTCCGCCTCCGACCC +
Preference number: 4 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLTAGQP*KLRLRP
Trigger: GGGTCGGAGGCGGAGCTTCCATGGCTGCCCAGCGGT...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCTGTGTGCTTCTCCAGCATGGTATTTaGCTCTGGGCATGGGCCCCT +
Preference number: 4 (lower is better)
Translates to: VVHGAGIKHPIDQDSCVLLQHGI*LWAWAP
Trigger: AGGGGCCCATGCCCAGAGTCAAATACCATGCTGGAG...AAGCACACAGCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR TCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTAGAGCAACTGGGCTTTaGGGAAGGTGGTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: VTTESQTATPFMVSWSTFRATGL*GRWSTS
Trigger: AGAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCT...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp CATAGCCAACAAGGCCAGTGGCTTGCTCTGCTCAGCTGCGGATCTGTGTCCCTGGAAAATGGTCCTTCATaGAGGTCAAGGCTTTGTCAG +
Preference number: 4 (lower is better)
Translates to: HSQQGQWLALLSCGSVSLENGPS*RSRLCQ
Trigger: CTGACAAAGCCTTGACCTTCATGAAGGACCATTTTC...CAGGGACACAGATCCGCAGCTGAGCAGAGCAAGCCACTGGCCTTGTTGGCTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACATCAAGGCCCCGAGCTaGCTCCACAGCAAGCCGTGT +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHIKAPS*LHSKPC
Trigger: ACACGGCTTGCTGTGGAGTCAGCTCGGGGCCTTGAT...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCAGCATCCCACAGCCCTaGACCTTACCCCGAGCCCGC +
Preference number: 4 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLSIPQP*TLPRAR
Trigger: GCGGGCTCGGGGTAAGGTTCAGGGCTGTGGGATGCT...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGCCACATAGAGAGTGTTaGCATCGTCACTCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGEPHREC*HRHSGA
Trigger: TGCTCCTGAGTGACGATGGCAACACTCTCTATGTGG...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp ACTGGTAAAGGAAACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGGTGGTCCACTTCTTCTaGAGCAGCTTTTCACCGCCC +
Preference number: 4 (lower is better)
Translates to: TGKGNTRGQLHRDSWEGGVVHFF*SSFSPP
Trigger: GGGCGGTGAAAAGCTGCTGCAGAAGAAGTGGACCAC...CCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTTACCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGACTGGGAGGTAAAGACTaGGTAGATGCGGGAAACAGA +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRLGGKD*VDAGNR
Trigger: TCTGTTTCCCGCATCTACGCAGTCTTTACCTCCCAG...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCACTGGGAGGTAAAGACTaGGTAGATGCGGGAAACAGA +
Preference number: 4 (lower is better)
Translates to: ANSIETLGKEGGLVFKAALGGKD*VDAGNR
Trigger: TCTGTTTCCCGCATCTACGCAGTCTTTACCTCCCAG...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGACCACGAGATAAGCACTaGTGTCCTGAGGCACCACAG +
Preference number: 4 (lower is better)
Translates to: ESQTATPFMVSWSTFVTGPRDKH*CPEAPQ
Trigger: CTGTGGTGCCTCAGGACAGCAGTGCTTATCTCGTGG...TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTTGGGAACTCTCCAGATaGCTCCAGAGAAGCCTGCAA +
Preference number: 4 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQIWELSR*LQRSLQ
Trigger: TTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCA...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGAGCTCTCGTAGACACTaGAATTGGCCCTGGGAACTC +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRSSRRH*NWPWEL
Trigger: GAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCT...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGAGCCAGACAGAAGGCTaGAGAGTCTTGATTCAGGGT +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGESQTEG*RVLIQG
Trigger: ACCCTGAATCAAGACTCTGCAGCCTTCTGTCTGGCT...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGAAGCCAGACAGAAGGCTaGAGAGTCTTGATTCAGGGT +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRSQTEG*RVLIQG
Trigger: ACCCTGAATCAAGACTCTGCAGCCTTCTGTCTGGCT...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGAATACCCACTCCGGGTTaGCGCGTTCCATGTCCTGCT +
Preference number: 4 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGIPTPG*RVPCPA
Trigger: AGCAGGACATGGAACGCGGCAACCCGGAGTGGGTAT...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCGGAGGCCTTTTTGTTaGAAGAAGCTGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMRRPFC*KKLRAL
Trigger: CAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCG...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATGGGATTCCTGGGTTCTaGATATTCAAGGCCAGGACG +
Preference number: 4 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDGIPGF*IFKART
Trigger: CGTCCTGGCCTTGAATATCCAGAACCCAGGAATCCC...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGACGACCTGGGTGGATaGAATGGCTGCCACGAAGGA +
Preference number: 4 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFDDLGG*NGCHEG
Trigger: TCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTC...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTAATAGACGACCTGGGTaGATGGAATGGCTGCCACGA +
Preference number: 4 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQINRRPG*MEWLPR
Trigger: TCGTGGCAGCCATTCCATCCACCCAGGTCGTCTATT...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGGAATGGCAGCTGCCCTaGCTGAGCGCAGAGCAACTG +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQEWQLP*LSAEQL
Trigger: CAGTTGCTCTGCGCTCAGCCAGGGCAGCTGCCATTC...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGGGCAGCAGGACCGCGTaGCGGATGATGTTGAATGGC +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQGSRTA*RMMLNG
Trigger: GCCATTCAACATCATCCGCCACGCGGTCCTGCTGCC...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ACTGGTAAAGGAAACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGCACTGCAATTGGCCCTaGGAACTCTCCAGATGCCTC +
Preference number: 4 (lower is better)
Translates to: TGKGNTRGQLHRDSWEGGHCNWP*ELSRCL
Trigger: GAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTG...CCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTTACCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATCACAGTGAGGGTCCCTaGCAAGCACACAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYHSEGP*QAHSPH
Trigger: GTGTGGACTGTGTGCTTGCCAGGGACCCTCACTGTG...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGGCTCCAGGATGGAGTTaGGGACTGTCAGGACTTCTT +
Preference number: 4 (lower is better)
Translates to: SPQNPRQPHLSWSPGARLAPGWS*GLSGLL
Trigger: AAGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGC...CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCATCCAGCGCCAGGGGCTaGTCCTGGCTGTCTACCCAA +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTASSARG*SWLSTQ
Trigger: TTGGGTAGACAGCCAGGACCAGCCCCTGGCGCTGGA...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCACTGGCAGAGGTCCTGTaGTCCTTGGAGGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTALAEVL*SLEGWR
Trigger: CCTCCAGCCCTCCAAGGACCACAGGACCTCTGCCAG...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATCGGCATCTACGTCACTaGCAGAGGTCCTGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYRHLRH*QRSCGP
Trigger: AGGACCACAGGACCTCTGCCAGTGACGTAGATGCCG...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CAA 72 bp AGCGTTCAGGATGGAGTTTGCAGGAATAGCCCCAGCTaGCTCGGATGCTTAGGTTTGTCACCACAGAATCCC +
Preference number: 4 (lower is better)
Translates to: SVQDGVCRNSPS*LGCLGLSPQNP
Trigger: GGGATTCTGTGGTGACAAACCTAAGCATCCGAGCAAGCTGGGGCTATTCCTGCAAACTCCATCCTGAACGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CAA 72 bp CAGGCAATGGCCTATGTAGTCTTCTGTGTTGAGCTCTaGCCAGCCTGTTCCTGGTCCTTCCTCAAACACCAG +
Preference number: 4 (lower is better)
Translates to: QAMAYVVFCVEL*PACSWSFLKHQ
Trigger: CTGGTGTTTGAGGAAGGACCAGGAACAGGCTGGCAAGAGCTCAACACAGAAGACTACATAGGCCATTGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
CDS-3UTR TCA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGAAGAAGCAGGTGGCAGTaGTGGCAGCAGGAAGAGTTG +
Preference number: 4 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGRSRWQ*WQQEEL
Trigger: CAACTCTTCCTGCTGCCATCACTGCCACCTGCTTCT...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GGAAGTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCTGTGTAGAAGCAGGTGGCAGTaGTGGCAGCAGGAAGAGTTG +
Preference number: 4 (lower is better)
Translates to: GSCSWCRNKASHRPRQLCRSRWQ*WQQEEL
Trigger: CAACTCTTCCTGCTGCCATCACTGCCACCTGCTTCT...ACACAGCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR GCA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATCCACATAGAGAGTGTTaGCATCGTCACTCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDPHREC*HRHSGA
Trigger: TGCTCCTGAGTGACGATGGCAACACTCTCTATGTGG...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATTCAGGATGGGCTCGCTaGCCAGGAAGTTGTTCATGG +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYSGWAR*PGSCSW
Trigger: CCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGA...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGTGGTCCACTTCTTCTaGAGCAGCTTTTCACCGCCC +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYVVHFF*SSFSPP
Trigger: GGGCGGTGAAAAGCTGCTGCAGAAGAAGTGGACCAC...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATCCACGAGATAAGCACTaGTGTCCTGAGGCACCACAG +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYPRDKH*CPEAPQ
Trigger: CTGTGGTGCCTCAGGACAGCAGTGCTTATCTCGTGG...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp ACTGGTAAAGGAAACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGAACTCTCCAGATaGCTCCAGAGAAGCCTGCAA +
Preference number: 4 (lower is better)
Translates to: TGKGNTRGQLHRDSWEGGWELSR*LQRSLQ
Trigger: TTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCA...CCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTTACCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCAGCCAGACAGAAGGCTaGAGAGTCTTGATTCAGGGT +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCSQTEG*RVLIQG
Trigger: ACCCTGAATCAAGACTCTGCAGCCTTCTGTCTGGCT...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ACTGGTAAAGGAAACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGGGGATTCCTGGGTTCTaGATATTCAAGGCCAGGACG +
Preference number: 4 (lower is better)
Translates to: TGKGNTRGQLHRDSWEGGGIPGF*IFKART
Trigger: CGTCCTGGCCTTGAATATCCAGAACCCAGGAATCCC...CCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTTACCAGT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCCAGGAAGTTGTTCATaGTGCCGGAATAAAGCATCC +
Preference number: 4 (lower is better)
Translates to: NTRGQLHRDSWEGGWAGVPGSCS*CRNKAS
Trigger: GGATGCTTTATTCCGGCACCATGAACAACTTCCTGG...AACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGAGTCTTGAGAACAGGCTaGGATCCCAGTGTCCGCATC +
Preference number: 4 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGVLRTG*DPSVRI
Trigger: GATGCGGACACTGGGATCCCAGCCTGTTCTCAAGAC...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGACCTACTGAGAAGTCAAACTCGCTaGCTGTCTCCTCAAAGAAGA +
Preference number: 4 (lower is better)
Translates to: WRQPNVLAEESPTGEDLLRSQTR*LSPQRR
Trigger: TCTTCTTTGAGGAGACAGCCAGCGAGTTTGACTTCT...CAGTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCTCATCCATCAGAAAATaGTCCTTCATGAAGGTCAAG +
Preference number: 4 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGSSIRK*SFMKVK
Trigger: CTTGACCTTCATGAAGGACCATTTTCTGATGGATGA...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCACAGTGAGGGTCCCTaGCAAGCACACAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQHSEGP*QAHSPH
Trigger: GTGTGGACTGTGTGCTTGCCAGGGACCCTCACTGTG...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGAGGCTTCTGAGATTTTaGCTCGGCCATGACTCCAGT +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRRLLRF*LGHDSS
Trigger: ACTGGAGTCATGGCCGAGCCAAAATCTCAGAAGCCT...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGAGAAGCAGGTGGCAGTaGTGGCAGCAGGAAGAGTTG +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQRSRWQ*WQQEEL
Trigger: CAACTCTTCCTGCTGCCATCACTGCCACCTGCTTCT...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCATCAAGGCCCCGAGCTaGCTCCACAGCAAGCCGTGT +
Preference number: 4 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLIKAPS*LHSKPC
Trigger: ACACGGCTTGCTGTGGAGTCAGCTCGGGGCCTTGAT...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAAGGCTGCAGAGTCTTaGTTCAGGGTCCCAGGCACA +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHKAAES*FRVPGT
Trigger: TGTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTT...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACGTGGTCCACTTCTTCTaGAGCAGCTTTTCACCGCCC +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHVVHFF*SSFSPP
Trigger: GGGCGGTGAAAAGCTGCTGCAGAAGAAGTGGACCAC...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGACTGGGAGGTAAAGACTaGGTAGATGCGGGAAACAGA +
Preference number: 4 (lower is better)
Translates to: ESQTATPFMVSWSTFVTGLGGKD*VDAGNR
Trigger: TCTGTTTCCCGCATCTACGCAGTCTTTACCTCCCAG...TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTTGGGAACTCTCCAGATaGCTCCAGAGAAGCCTGCAA +
Preference number: 4 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFWELSR*LQRSLQ
Trigger: TTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCA...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTAGCTCTCGTAGACACTaGAATTGGCCCTGGGAACTC +
Preference number: 4 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFSSRRH*NWPWEL
Trigger: GAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCT...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATAGCTCTCGTAGACACTaGAATTGGCCCTGGGAACTC +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYSSRRH*NWPWEL
Trigger: GAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCT...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCGGAGGTGCTGGTCCCTaGTCAGTGGAGCCTTTTCCC +
Preference number: 4 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLGGAGP*SVEPFP
Trigger: GGGAAAAGGCTCCACTGAGCAGGGACCAGCACCTCC...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACCGGAGGCCTTTTTGTTaGAAGAAGCTGAGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHRRPFC*KKLRAL
Trigger: CAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCG...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAAGTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCTGTGTGGGGATTCCTGGGTTCTaGATATTCAAGGCCAGGACG +
Preference number: 4 (lower is better)
Translates to: EVVHGAGIKHPIDQDSCVGIPGF*IFKART
Trigger: CGTCCTGGCCTTGAATATCCAGAACCCAGGAATCCC...CACACAGCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR CCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGACCTTGTCTATCAAGATaGGCAACAGGAGGGAATCTT +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRPCLSR*ATGGNL
Trigger: AAGATTCCCTCCTGTTGCCCATCTTGATAGACAAGG...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTCCAGGAAGTTGTTCATaGTGCCGGAATAAAGCATCC +
Preference number: 4 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQIPGSCS*CRNKAS
Trigger: GGATGCTTTATTCCGGCACCATGAACAACTTCCTGG...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCCCAGGAAGTTGTTCATaGTGCCGGAATAAAGCATCC +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCPGSCS*CRNKAS
Trigger: GGATGCTTTATTCCGGCACCATGAACAACTTCCTGG...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAGACGACCTGGGTGGATaGAATGGCTGCCACGAAGGA +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTADDLGG*NGCHEG
Trigger: TCCTTCGTGGCAGCCATTCCATCCACCCAGGTCGTC...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTAGAAGTCAAACTCGCTaGCTGTCTCCTCAAAGAAGA +
Preference number: 4 (lower is better)
Translates to: NTRGQLHRDSWEGGWAGVRSQTR*LSPQRR
Trigger: TCTTCTTTGAGGAGACAGCCAGCGAGTTTGACTTCT...AACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACCACTGCAATTGGCCCTaGGAACTCTCCAGATGCCTC +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHHCNWP*ELSRCL
Trigger: GAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTG...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAAGGGCAGCTCCAGGATaGAGTTGGGGACTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTARAAPG*SWGLSG
Trigger: TCCTGACAGTCCCCAACTCCATCCTGGAGCTGCCCT...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGAAAATGGTCCTTCATaGAGGTCAAGGCTTTGTCAG +
Preference number: 4 (lower is better)
Translates to: VTTESQTATPFMVSWSTFENGPS*RSRLCQ
Trigger: CTGACAAAGCCTTGACCTTCATGAAGGACCATTTTC...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAAAGGCTGCAGAGTCTTaGTTCAGGGTCCCAGGCACA +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTAKAAES*FRVPGT
Trigger: TGTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTT...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCTGTGTGCTTCCACATAGAGAGTGTTaGCATCGTCACTCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: VVHGAGIKHPIDQDSCVLPHREC*HRHSGA
Trigger: TGCTCCTGAGTGACGATGGCAACACTCTCTATGTGG...AAGCACACAGCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR GCA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGGGAAGTTGTTCATGGTaGCGGAATAAAGCATCCCAT +
Preference number: 4 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRRGSCSW*RNKASH
Trigger: ATGGGATGCTTTATTCCGGCACCATGAACAACTTCC...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCGGAAGTTGTTCATGGTaGCGGAATAAAGCATCCCAT +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCGSCSW*RNKASH
Trigger: ATGGGATGCTTTATTCCGGCACCATGAACAACTTCC...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCATCAGGATGGGCTCGCTaGCCAGGAAGTTGTTCATGG +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTASGWAR*PGSCSW
Trigger: CCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGA...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCTCTCGTAGACACTaGAATTGGCCCTGGGAACTC +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHSSRRH*NWPWEL
Trigger: GAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCT...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTAGCCAGACAGAAGGCTaGAGAGTCTTGATTCAGGGT +
Preference number: 4 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFSQTEG*RVLIQG
Trigger: ACCCTGAATCAAGACTCTGCAGCCTTCTGTCTGGCT...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACGGGATTCCTGGGTTCTaGATATTCAAGGCCAGGACG +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHGIPGF*IFKART
Trigger: CGTCCTGGCCTTGAATATCCAGAACCCAGGAATCCC...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGGGGATTCCTGGGTTCTaGATATTCAAGGCCAGGACG +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQGIPGF*IFKART
Trigger: CGTCCTGGCCTTGAATATCCAGAACCCAGGAATCCC...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGAACAGGAGGGAATCTTaGAGTTCAATGAAGGTACAG +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGENRRES*SSMKVQ
Trigger: CTGTACCTTCATTGAACTCCAAGATTCCCTCCTGTT...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTCCTTGTCTATCAAGATaGGCAACAGGAGGGAATCTT +
Preference number: 4 (lower is better)
Translates to: VTTESQTATPFMVSWSTFPCLSR*ATGGNL
Trigger: AAGATTCCCTCCTGTTGCCCATCTTGATAGACAAGG...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGCCTTGTCTATCAAGATaGGCAACAGGAGGGAATCTT +
Preference number: 4 (lower is better)
Translates to: SPQNPRQPHLSWSPGARLPCLSR*ATGGNL
Trigger: AAGATTCCCTCCTGTTGCCCATCTTGATAGACAAGG...CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCCCTTGTCTATCAAGATaGGCAACAGGAGGGAATCTT +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCPCLSR*ATGGNL
Trigger: AAGATTCCCTCCTGTTGCCCATCTTGATAGACAAGG...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCAGAAGTCAAACTCGCTaGCTGTCTCCTCAAAGAAGA +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCRSQTR*LSPQRR
Trigger: TCTTCTTTGAGGAGACAGCCAGCGAGTTTGACTTCT...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCCACAGTGAGGGTCCCTaGCAAGCACACAGTCCACAC +
Preference number: 4 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLHSEGP*QAHSPH
Trigger: GTGTGGACTGTGTGCTTGCCAGGGACCCTCACTGTG...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCCGGCATCTACGTCACTaGCAGAGGTCCTGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLRHLRH*QRSCGP
Trigger: AGGACCACAGGACCTCTGCCAGTGACGTAGATGCCG...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGGAAAATGGTCCTTCATaGAGGTCAAGGCTTTGTCAG +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMENGPS*RSRLCQ
Trigger: CTGACAAAGCCTTGACCTTCATGAAGGACCATTTTC...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCCACATAGAGAGTGTTaGCATCGTCACTCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQPHREC*HRHSGA
Trigger: TGCTCCTGAGTGACGATGGCAACACTCTCTATGTGG...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGGGAAGTTGTTCATGGTaGCGGAATAAAGCATCCCAT +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMGSCSW*RNKASH
Trigger: ATGGGATGCTTTATTCCGGCACCATGAACAACTTCC...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCTGGGAGGTAAAGACTaGGTAGATGCGGGAAACAGA +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQLGGKD*VDAGNR
Trigger: TCTGTTTCCCGCATCTACGCAGTCTTTACCTCCCAG...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACCTGGGAGGTAAAGACTaGGTAGATGCGGGAAACAGA +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHLGGKD*VDAGNR
Trigger: TCTGTTTCCCGCATCTACGCAGTCTTTACCTCCCAG...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGAGGTGTTCCTACCACGTaGTCATCCATCAGAAAATGG +
Preference number: 4 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGGVPTT*SSIRKW
Trigger: CCATTTTCTGATGGATGAGCACGTGGTAGGAACACC...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCAACAGGAGGGAATCTTaGAGTTCAATGAAGGTACAG +
Preference number: 4 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCNRRES*SSMKVQ
Trigger: CTGTACCTTCATTGAACTCCAAGATTCCCTCCTGTT...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTCCAGGAAGTTGTTCATaGTGCCGGAATAAAGCATCC +
Preference number: 4 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFPGSCS*CRNKAS
Trigger: GGATGCTTTATTCCGGCACCATGAACAACTTCCTGG...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCGTCTTGAGAACAGGCTaGGATCCCAGTGTCCGCATC +
Preference number: 4 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLVLRTG*DPSVRI
Trigger: GATGCGGACACTGGGATCCCAGCCTGTTCTCAAGAC...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp ACTGGTAAAGGAAACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGAGAAGTCAAACTCGCTaGCTGTCTCCTCAAAGAAGA +
Preference number: 4 (lower is better)
Translates to: TGKGNTRGQLHRDSWEGGRSQTR*LSPQRR
Trigger: TCTTCTTTGAGGAGACAGCCAGCGAGTTTGACTTCT...CCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTTACCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATCATCCATCAGAAAATaGTCCTTCATGAAGGTCAAG +
Preference number: 4 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRSSIRK*SFMKVK
Trigger: CTTGACCTTCATGAAGGACCATTTTCTGATGGATGA...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GTACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGTCATCCATCAGAAAATaGTCCTTCATGAAGGTCAAG +
Preference number: 4 (lower is better)
Translates to: VQVWRQPNVLAEESPTGESSIRK*SFMKVK
Trigger: CTTGACCTTCATGAAGGACCATTTTCTGATGGATGA...CTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAAGATACATGACCACATaGCTGCTCCCATCAAGGCCC +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTARYMTT*LLPSRP
Trigger: GGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCT...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
3UTR CAA 72 bp ATGGTCTCCTGGAGCACGTTTGTTACAGGAGGGCTCTaGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTC +
Preference number: 4 (lower is better)
Translates to: MVSWSTFVTGGL*GQSKSKKPVWL
Trigger: GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAACGTGCTCCAGGAGACCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR TCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGAAAATGGTCCTTCATaGAGGTCAAGGCTTTGTCAG +
Preference number: 4 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFENGPS*RSRLCQ
Trigger: CTGACAAAGCCTTGACCTTCATGAAGGACCATTTTC...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCACCACATAGAGAGTGTTaGCATCGTCACTCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTAPHREC*HRHSGA
Trigger: TGCTCCTGAGTGACGATGGCAACACTCTCTATGTGG...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGGAAGTTGTTCATGGTaGCGGAATAAAGCATCCCAT +
Preference number: 4 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFGSCSW*RNKASH
Trigger: ATGGGATGCTTTATTCCGGCACCATGAACAACTTCC...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACGGTGTTCCTACCACGTaGTCATCCATCAGAAAATGG +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHGVPTT*SSIRKW
Trigger: CCATTTTCTGATGGATGAGCACGTGGTAGGAACACC...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGGGTGTTCCTACCACGTaGTCATCCATCAGAAAATGG +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQGVPTT*SSIRKW
Trigger: CCATTTTCTGATGGATGAGCACGTGGTAGGAACACC...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCAGCTCTCGTAGACACTaGAATTGGCCCTGGGAACTC +
Preference number: 4 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLSSRRH*NWPWEL
Trigger: GAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCT...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR GCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAAGCCAGACAGAAGGCTaGAGAGTCTTGATTCAGGGT +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTASQTEG*RVLIQG
Trigger: ACCCTGAATCAAGACTCTGCAGCCTTCTGTCTGGCT...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGAACAGGAGGGAATCTTaGAGTTCAATGAAGGTACAG +
Preference number: 4 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMNRRES*SSMKVQ
Trigger: CTGTACCTTCATTGAACTCCAAGATTCCCTCCTGTT...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATAACAGGAGGGAATCTTaGAGTTCCTCATTGCTCTTC +
Preference number: 4 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYNRRES*SSSLLF
Trigger: GAAGAGCAATGAGGAACTCCAAGATTCCCTCCTGTT...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107531.8
CDS-3UTR GCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACGGAAGTTGTTCATGGTaGCGGAATAAAGCATCCCAT +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHGSCSW*RNKASH
Trigger: ATGGGATGCTTTATTCCGGCACCATGAACAACTTCC...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCCTTGTCTATCAAGATaGGCAACAGGAGGGAATCTT +
Preference number: 4 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQPCLSR*ATGGNL
Trigger: AAGATTCCCTCCTGTTGCCCATCTTGATAGACAAGG...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCACCAGGAAGTTGTTCATaGTGCCGGAATAAAGCATCC +
Preference number: 4 (lower is better)
Translates to: ALGSIKIKETCLALPVTAPGSCS*CRNKAS
Trigger: GGATGCTTTATTCCGGCACCATGAACAACTTCCTGG...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCAGGCTTCTGAGATTTTaGCTCGGCCATGACTCCAGT +
Preference number: 4 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLRLLRF*LGHDSS
Trigger: ACTGGAGTCATGGCCGAGCCAAAATCTCAGAAGCCT...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGATCATCCATCAGAAAATaGTCCTTCATGAAGGTCAAG +
Preference number: 4 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGSSIRK*SFMKVK
Trigger: CTTGACCTTCATGAAGGACCATTTTCTGATGGATGA...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCAGAAGTCAAACTCGCTaGCTGTCTCCTCAAAGAAGA +
Preference number: 4 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLRSQTR*LSPQRR
Trigger: TCTTCTTTGAGGAGACAGCCAGCGAGTTTGACTTCT...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CCA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACTCATCCATCAGAAAATaGTCCTTCATGAAGGTCAAG +
Preference number: 4 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHSSIRK*SFMKVK
Trigger: CTTGACCTTCATGAAGGACCATTTTCTGATGGATGA...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS GCA 90 bp TGGGCAGCCATGGAAGCTCCGCCTCCGACCCTGGTCAGCGGGACCTaGACACGCTCACGGGGAACGCCCGCCAGCTCAGGGTCCAGCGCC +
Preference number: 5 (lower is better)
Translates to: WAAMEAPPPTLVSGT*TRSRGTPASSGSSA
Trigger: GGCGCTGGACCCTGAGCTGGCGGGCGTTCCCCGTGAGCGTGTGCAGGTCCCGCTGACCAGGGTCGGAGGCGGAGCTTCCATGGCTGCCCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 90 bp GCCAGTAGGACCGCTGGGCAGCCATGGAAGCTCCGCCTCCGACCCTaGTCAGCGGGACCTGCACACGCTCACGGGGAACGCCCGCCAGCT +
Preference number: 5 (lower is better)
Translates to: ASRTAGQPWKLRLRP*SAGPAHAHGERPPA
Trigger: AGCTGGCGGGCGTTCCCCGTGAGCGTGTGCAGGTCCCGCTGACCAGGGTCGGAGGCGGAGCTTCCATGGCTGCCCAGCGGTCCTACTGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS TCA 90 bp AGAGGAGGGGCCCATGGAGCAACTGCCTGGCCTCGGGCTGACCTCTaGGCCCCGGTAAGTGGTCCAGCGGGAGGTCTCCTTGTTCAGCTC +
Preference number: 5 (lower is better)
Translates to: RGGAHGATAWPRADL*APVSGPAGGLLVQL
Trigger: GAGCTGAACAAGGAGACCTCCCGCTGGACCACTTACCGGGGCTCAGAGGTCAGCCCGAGGCCAGGCAGTTGCTCCATGGGCCCCTCCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS TCA 90 bp CTTTGTCAGAGGAGGGGCCCATGGAGCAACTGCCTGGCCTCGGGCTaGCCTCTGAGCCCCGGTAAGTGGTCCAGCGGGAGGTCTCCTTGT +
Preference number: 5 (lower is better)
Translates to: LCQRRGPWSNCLASG*PLSPGKWSSGRSPC
Trigger: ACAAGGAGACCTCCCGCTGGACCACTTACCGGGGCTCAGAGGTCAGCCCGAGGCCAGGCAGTTGCTCCATGGGCCCCTCCTCTGACAAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS GCA 90 bp GGCCCTGGGAACTCTCCAGATGCCTCCAGAGAAGCCTGCAAACACTaGACCCTGGGCGGGGGCCAGCTGCAGGTTTCGAACAGGCTCAGA +
Preference number: 5 (lower is better)
Translates to: GPGNSPDASREACKH*TLGGGQLQVSNRLR
Trigger: TCTGAGCCTGTTCGAAACCTGCAGCTGGCCCCCGCCCAGGGTGCAGTGTTTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCAGGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS TCA 90 bp GCACCACAGCCTTGTGCAGGGACCCCGTGGAGGTACCCAGATACATaGCCACATGGCTGCTCCCATCAAGGCCCCGAGCTGACTCCACAG +
Preference number: 5 (lower is better)
Translates to: APQPCAGTPWRYPDT*PHGCSHQGPELTPQ
Trigger: CTGTGGAGTCAGCTCGGGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCTGGGTACCTCCACGGGGTCCCTGCACAAGGCTGTGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 90 bp GCCTTGTGCAGGGACCCCGTGGAGGTACCCAGATACATGACCACATaGCTGCTCCCATCAAGGCCCCGAGCTGACTCCACAGCAAGCCGT +
Preference number: 5 (lower is better)
Translates to: ALCRDPVEVPRYMTT*LLPSRPRADSTASR
Trigger: ACGGCTTGCTGTGGAGTCAGCTCGGGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCTGGGTACCTCCACGGGGTCCCTGCACAAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 90 bp AAGCCACTTCGGCGCCCAGATGGTTGTTGTCGGCATCTACGTCACTaGCAGAGGTCCTGTGGTCCTTGGAGGGCTGGAGGTGCTGGTCCC +
Preference number: 5 (lower is better)
Translates to: KPLRRPDGCCRHLRH*QRSCGPWRAGGAGP
Trigger: GGGACCAGCACCTCCAGCCCTCCAAGGACCACAGGACCTCTGCCAGTGACGTAGATGCCGACAACAACCATCTGGGCGCCGAAGTGGCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS GCA 90 bp CACAGCTCTCGTAGACACTGCAATTGGCCCTGGGAACTCTCCAGATaGCTCCAGAGAAGCCTGCAAACACTGCACCCTGGGCGGGGGCCA +
Preference number: 5 (lower is better)
Translates to: HSSRRHCNWPWELSR*LQRSLQTLHPGRGP
Trigger: TGGCCCCCGCCCAGGGTGCAGTGTTTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AACAGAGGGAGAATCGGCGGGCAGCAGGACCGCGTGGCGGATGATGTTGAATGGAGGGTCAAAGGGGCTTaGGCCCTTCCCGTCCATGAC +
Preference number: 5 (lower is better)
Translates to: NRGRIGGQQDRVADDVEWRVKGA*ALPVHD
Trigger: GTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCT...CCATTCAACATCATCCGCCACGCGGTCCTGCTGCCCGCCGATTCTCCCTCTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
CDS GCA 90 bp GAGGGTCCCTGGCAAGCACACAGTCCACACAGCTCTCGTAGACACTaGAATTGGCCCTGGGAACTCTCCAGATGCCTCCAGAGAAGCCTG +
Preference number: 5 (lower is better)
Translates to: EGPWQAHSPHSSRRH*NWPWELSRCLQRSL
Trigger: CAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCTGTGTGGACTGTGTGCTTGCCAGGGACCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTGCGTGGCGGATGATGTaGAATGGCAGCTGCCCTGGC +
Preference number: 5 (lower is better)
Translates to: NTRGQLHRDSWEGGWAGVAWRMM*NGSCPG
Trigger: GCCAGGGCAGCTGCCATTCAACATCATCCGCCACGC...AACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS TCA 90 bp ACCCAGATACATGACCACATGGCTGCTCCCATCAAGGCCCCGAGCTaGCTCCACAGCAAGCCGTGTGTACTCCACACCAGACTTCACCAG +
Preference number: 5 (lower is better)
Translates to: TQIHDHMAAPIKAPS*LHSKPCVLHTRLHQ
Trigger: CTGGTGAAGTCTGGTGTGGAGTACACACGGCTTGCTGTGGAGTCAGCTCGGGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCTGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS GCA 90 bp TATTCAAGGCCAGGACGGCCTCTCGAGCCCCCACATAGAGAGTGTTaGCATCGTCACTCAGGAGCAGCGTGTCAAAGTCTCGGAGGCCTT +
Preference number: 5 (lower is better)
Translates to: YSRPGRPLEPPHREC*HRHSGAACQSLGGL
Trigger: AAGGCCTCCGAGACTTTGACACGCTGCTCCTGAGTGACGATGGCAACACTCTCTATGTGGGGGCTCGAGAGGCCGTCCTGGCCTTGAATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000029700.12
ENSMUST00000125526.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR CAA 90 bp TGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGACCTACTGTCTCCAGCATGGTATTaGACTCTGGGCATGGGCCCC +
Preference number: 5 (lower is better)
Translates to: WRQPNVLAEESPTGEDLLSPAWY*TLGMGP
Trigger: GGGGCCCATGCCCAGAGTCAAATACCATGCTGGAGA...CAGTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGGTGGATGGAATGGCTGCCACGAAGGAGGCATCCGCGTGCAGCCAGCGTAAGATTCCCGTCCATGACCTaGTCTATCAAGATGGGCAAC +
Preference number: 5 (lower is better)
Translates to: GWMEWLPRRRHPRAASVRFPSMT*SIKMGN
Trigger: GTTGCCCATCTTGATAGACAAGGTCATGGACGGGAA...TCTTACGCTGGCTGCACGCGGATGCCTCCTTCGTGGCAGCCATTCCATCCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
CDS-3UTR CAA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGAAGGGTCAAAGGGGCTTaGGCCCTTCCCGTCCATGAC +
Preference number: 5 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRRVKGA*ALPVHD
Trigger: GTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCT...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATCATACCCACTCCGGGTaGCCGCGTTCCATGTCCTGC +
Preference number: 5 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDHTHSG*PRSMSC
Trigger: GCAGGACATGGAACGCGGCAACCCGGAGTGGGTATG...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 90 bp CCCTGGCAAGCACACAGTCCACACAGCTCTCGTAGACACTGCAATTaGCCCTGGGAACTCTCCAGATGCCTCCAGAGAAGCCTGCAAACA +
Preference number: 5 (lower is better)
Translates to: PWQAHSPHSSRRHCN*PWELSRCLQRSLQT
Trigger: TGTTTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCTGTGTGGACTGTGTGCTTGCCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCATCTCCAGCATGGTATTaGACTCTGGGCATGGGCCCC +
Preference number: 5 (lower is better)
Translates to: ANSIETLGKEGGLVFKAASPAWY*TLGMGP
Trigger: GGGGCCCATGCCCAGAGTCAAATACCATGCTGGAGA...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp CCGCATCAGGATGGGCTCGCTGCCCAGGAAGTTGTTCATGGTGCCGGAATAAAGTCGGAGGCCTTTTTGTaGGAAGAAGCTGAGGGCCCT +
Preference number: 5 (lower is better)
Translates to: PHQDGLAAQEVVHGAGIKSEAFL*EEAEGP
Trigger: AGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGA...CTTTATTCCGGCACCATGAACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
CDS-3UTR CAA 90 bp TGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGACCTACTGGTCTCGGAGGCCTTTTaGTTGGAAGAAGCTGAGGGC +
Preference number: 5 (lower is better)
Translates to: WRQPNVLAEESPTGEDLLVSEAF*LEEAEG
Trigger: GCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGAC...CAGTAGGTCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp CAGGCTGGGATCCCAGTGTCCGCATCAGGATGGGCTCGCTGCCCAGGAAGTTGTTCATGTTCTTTAGCCTaGGGATTCCTGGGTTCTGGA +
Preference number: 5 (lower is better)
Translates to: QAGIPVSASGWARCPGSCSCSLA*GFLGSG
Trigger: TCCAGAACCCAGGAATCCCAAGGCTAAAGAACATGA...ACAACTTCCTGGGCAGCGAGCCCATCCTGATGCGGACACTGGGATCCCAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
CDS-3UTR CAA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTAGGGTCAAAGGGGCTTaGGCCCTTCCCGTCCATGAC +
Preference number: 5 (lower is better)
Translates to: VTTESQTATPFMVSWSTFRVKGA*ALPVHD
Trigger: GTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCT...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATAGGGTCAAAGGGGCTTaGGCCCTTCCCGTCCATGAC +
Preference number: 5 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDRVKGA*ALPVHD
Trigger: GTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCT...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp ACTGGTAAAGGAAACACAAGGGGCCAACTCCATAGAGACTCTTGGGAAGGAGGGGCGTGGCGGATGATGTaGAATGGCAGCTGCCCTGGC +
Preference number: 5 (lower is better)
Translates to: TGKGNTRGQLHRDSWEGGAWRMM*NGSCPG
Trigger: GCCAGGGCAGCTGCCATTCAACATCATCCGCCACGC...CCCTCCTTCCCAAGAGTCTCTATGGAGTTGGCCCCTTGTGTTTCCTTTACCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGAGAAGGCTGCAGAGTCTaGATTCAGGGTCCCAGGCAC +
Preference number: 5 (lower is better)
Translates to: EEGRGQGSATLDKGTRLREGCRV*IQGPRH
Trigger: GTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTTC...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAGAAGGCTGCAGAGTCTaGATTCAGGGTCCCAGGCAC +
Preference number: 5 (lower is better)
Translates to: TGMETAQCACRRESHRGGEGCRV*IQGPRH
Trigger: GTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTTC...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 90 bp TCGTCACTCAGGAGCAGCGTGTCAAAGTCTCGGAGGCCTTTTTGTTaGAAGAAGCTGAGGGCCCTGTGCCCGTCTCCAGCATGGTATTTG +
Preference number: 5 (lower is better)
Translates to: SSLRSSVSKSRRPFC*KKLRALCPSPAWYL
Trigger: CAAATACCATGCTGGAGACGGGCACAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGACTTTGACACGCTGCTCCTGAGTGACGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000029700.12
ENSMUST00000125526.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS CCA 90 bp CAAGCACACAGTCCACACAGCTCTCGTAGACACTGCAATTGGCCCTaGGAACTCTCCAGATGCCTCCAGAGAAGCCTGCAAACACTGCAC +
Preference number: 5 (lower is better)
Translates to: QAHSPHSSRRHCNWP*ELSRCLQRSLQTLH
Trigger: GTGCAGTGTTTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCTGTGTGGACTGTGTGCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTCTCCAGCATGGTATTaGACTCTGGGCATGGGCCCC +
Preference number: 5 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDSPAWY*TLGMGP
Trigger: GGGGCCCATGCCCAGAGTCAAATACCATGCTGGAGA...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp ACGAAGGAGGCATCCGCGTGCAGCCAGCGTAAGAAGATGTCAGTCTTGAGAACATCTCCAGCATGGTATTaGACTCTGGGCATGGGCCCC +
Preference number: 5 (lower is better)
Translates to: TKEASACSQRKKMSVLRTSPAWY*TLGMGP
Trigger: GGGGCCCATGCCCAGAGTCAAATACCATGCTGGAGA...TGTTCTCAAGACTGACATCTTCTTACGCTGGCTGCACGCGGATGCCTCCTTCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
CDS-3UTR CAA 90 bp ACAGGTATGGAGACAGCCCAATGTGCTTGCAGAAGAGAGTCCCACAGGGGAGGAGTCTCGGAGGCCTTTTaGTTGGAAGAAGCTGAGGGC +
Preference number: 5 (lower is better)
Translates to: TGMETAQCACRRESHRGGVSEAF*LEEAEG
Trigger: GCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGAC...TCCTCCCCTGTGGGACTCTCTTCTGCAAGCACATTGGGCTGTCTCCATACCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCACAGAGCAACTGGGCTTaGAGGAAGGTGGTCCACTTC +
Preference number: 5 (lower is better)
Translates to: ANSIETLGKEGGLVFKAAQSNWA*RKVVHF
Trigger: GAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCTG...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp ATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGGGAAGGCTGCAGAGTCTaGATTCAGGGTCCCAGGCAC +
Preference number: 5 (lower is better)
Translates to: IPDSHTFHGLLEHVCYRREGCRV*IQGPRH
Trigger: GTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTTC...CCTCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGAAGGCTGCAGAGTCTaGATTCAGGGTCCCAGGCAC +
Preference number: 5 (lower is better)
Translates to: VTTESQTATPFMVSWSTFEGCRV*IQGPRH
Trigger: GTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTTC...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp TCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGGAAGGCTGCAGAGTCTaGATTCAGGGTCCCAGGCAC +
Preference number: 5 (lower is better)
Translates to: SPQNPRQPHLSWSPGARLEGCRV*IQGPRH
Trigger: GTGCCTGGGACCCTGAATCAAGACTCTGCAGCCTTC...CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GCCAACTCCATAGAGACTCTTGGGAAGGAGGGTGGGCTGGTGTTCAAAGCAGCATCCTGCTTCCAAGGCTaGGTAGAGCCAGACAGAAGG +
Preference number: 5 (lower is better)
Translates to: ANSIETLGKEGGLVFKAASCFQG*VEPDRR
Trigger: CCTTCTGTCTGGCTCTACCAAGCCTTGGAAGCAGGA...TGCTGCTTTGAACACCAGCCCACCCTCCTTCCCAAGAGTCTCTATGGAGTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GAGAGCCTCCTACCCTGGTCAGAGTGGCACTGTGCCTGGCATAGCCAACAAGGCCAACAGGAGGGAATCTaGGAGTTCCTCATTGCTCTT +
Preference number: 5 (lower is better)
Translates to: ESLLPWSEWHCAWHSQQGQQEGI*EFLIAL
Trigger: AAGAGCAATGAGGAACTCCAAGATTCCCTCCTGTTG...GCCTTGTTGGCTATGCCAGGCACAGTGCCACTCTGACCAGGGTAGGAGGCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107531.8
CDS-3UTR CAA 90 bp GAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGATCTCCAGCATGGTATTaGACTCTGGGCATGGGCCCC +
Preference number: 5 (lower is better)
Translates to: ESQTATPFMVSWSTFVTGSPAWY*TLGMGP
Trigger: GGGGCCCATGCCCAGAGTCAAATACCATGCTGGAGA...TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GCTGGCTGTCTCCTCAAAGAAGAAATAGACGACCTGGGTGGATGGAATGGCTGCGTCTCGGAGGCCTTTTaGTTGGAAGAAGCTGAGGGC +
Preference number: 5 (lower is better)
Translates to: AGCLLKEEIDDLGGWNGCVSEAF*LEEAEG
Trigger: GCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGAC...GCAGCCATTCCATCCACCCAGGTCGTCTATTTCTTCTTTGAGGAGACAGCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184487.8
CDS-3UTR CAA 90 bp CGCTGCCCAGGAAGTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGAGTCTCGGAGGCCTTTTaGTTGGAAGAAGCTGAGGGC +
Preference number: 5 (lower is better)
Translates to: RCPGSCSWCRNKASHRPRVSEAF*LEEAEG
Trigger: GCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGAC...TCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR CAA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGAAGGGTCAAAGGGGCTTaGGCCCTTCCCGTCCATGAC +
Preference number: 5 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGRVKGA*ALPVHD
Trigger: GTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCT...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATCAGAGCAACTGGGCTTaGAGGAAGGTGGTCCACTTC +
Preference number: 5 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDQSNWA*RKVVHF
Trigger: GAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCTG...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTCAGAGCAACTGGGCTTaGAGGAAGGTGGTCCACTTC +
Preference number: 5 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQIQSNWA*RKVVHF
Trigger: GAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCTG...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGGCGTGGCGGATGATGTaGAATGGCAGCTGCCCTGGC +
Preference number: 5 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQAWRMM*NGSCPG
Trigger: GCCAGGGCAGCTGCCATTCAACATCATCCGCCACGC...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTCCTGCTTCCAAGGCTaGGTAGAGCCAGACAGAAGG +
Preference number: 5 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDSCFQG*VEPDRR
Trigger: CCTTCTGTCTGGCTCTACCAAGCCTTGGAAGCAGGA...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTTCCTGCTTCCAAGGCTaGGTAGAGCCAGACAGAAGG +
Preference number: 5 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQISCFQG*VEPDRR
Trigger: CCTTCTGTCTGGCTCTACCAAGCCTTGGAAGCAGGA...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCATACCCACTCCGGGTaGCCGCGTTCCATGTCCTGC +
Preference number: 5 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQHTHSG*PRSMSC
Trigger: GCAGGACATGGAACGCGGCAACCCGGAGTGGGTATG...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp TCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGAGCTCCAGGATGGAGTaGGGGACTGTCAGGACTTCT +
Preference number: 5 (lower is better)
Translates to: SPQNPRQPHLSWSPGARLSSRME*GTVRTS
Trigger: AGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGCT...CAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTAGCTCCAGGATGGAGTaGGGGACTGTCAGGACTTCT +
Preference number: 5 (lower is better)
Translates to: VTTESQTATPFMVSWSTFSSRME*GTVRTS
Trigger: AGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGCT...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATAGCTCCAGGATGGAGTaGGGGACTGTCAGGACTTCT +
Preference number: 5 (lower is better)
Translates to: RKEEVKGQPHWTREQGSDSSRME*GTVRTS
Trigger: AGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGCT...ATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGTCGGAGGCCTTTTTGTaGGAAGAAGCTGAGGGCCCT +
Preference number: 5 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMSEAFL*EEAEGP
Trigger: AGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGA...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCTGTGTGCTTGTGTCGGAGGCCTTTTTGTaGGAAGAAGCTGAGGGCCCT +
Preference number: 5 (lower is better)
Translates to: VHGAGIKHPIDQDSCVLVSEAFL*EEAEGP
Trigger: AGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGA...CACAAGCACACAGCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR CAA 90 bp GAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAGTCTCGGAGGCCTTTTaGTTGGAAGAAGCTGAGGGC +
Preference number: 5 (lower is better)
Translates to: ESQTATPFMVSWSTFVTGVSEAF*LEEAEG
Trigger: GCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGAC...TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGAGGGTCAAAGGGGCTTaGGCCCTTCCCGTCCATGAC +
Preference number: 5 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQRVKGA*ALPVHD
Trigger: GTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCT...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGACAGAGCAACTGGGCTTaGAGGAAGGTGGTCCACTTC +
Preference number: 5 (lower is better)
Translates to: ESQTATPFMVSWSTFVTGQSNWA*RKVVHF
Trigger: GAAGTGGACCACCTTCCTCAAAGCCCAGTTGCTCTG...TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCACATACCCACTCCGGGTaGCCGCGTTCCATGTCCTGC +
Preference number: 5 (lower is better)
Translates to: ALGSIKIKETCLALPVTAHTHSG*PRSMSC
Trigger: GCAGGACATGGAACGCGGCAACCCGGAGTGGGTATG...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS TCA 90 bp TGTGCTTGTGAACAGGGTCAAAGGGGCTTTGGCCCTTCCCGTCCATaGCCTTGTCTATCAAGATGGGCAACAGGAGGGAATCTTGGAGTT +
Preference number: 5 (lower is better)
Translates to: CACEQGQRGFGPSRP*PCLSRWATGGNLGV
Trigger: AACTCCAAGATTCCCTCCTGTTGCCCATCTTGATAGACAAGGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCTGTTCACAAGCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000185137.8
CDS-3UTR CAA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTTCGGAGGCCTTTTTGTaGGAAGAAGCTGAGGGCCCT +
Preference number: 5 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFSEAFL*EEAEGP
Trigger: AGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGA...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCTTCCCGTCCATGACCTaGTCTATCAAGATGGGCAAC +
Preference number: 5 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCFPSMT*SIKMGN
Trigger: GTTGCCCATCTTGATAGACAAGGTCATGGACGGGAA...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATTCCTGCTTCCAAGGCTaGGTAGAGCCAGACAGAAGG +
Preference number: 5 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYSCFQG*VEPDRR
Trigger: CCTTCTGTCTGGCTCTACCAAGCCTTGGAAGCAGGA...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCCATACCCACTCCGGGTaGCCGCGTTCCATGTCCTGC +
Preference number: 5 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLHTHSG*PRSMSC
Trigger: GCAGGACATGGAACGCGGCAACCCGGAGTGGGTATG...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS GCA 90 bp GTGTACTCCACACCAGACTTCACCAGCAGGGGTGTTCCTACCACGTaGTCATCCATCAGAAAATGGTCCTTCATGAAGGTCAAGGCTTTG +
Preference number: 5 (lower is better)
Translates to: VYSTPDFTSRGVPTT*SSIRKWSFMKVKAL
Trigger: CAAAGCCTTGACCTTCATGAAGGACCATTTTCTGATGGATGAGCACGTGGTAGGAACACCCCTGCTGGTGAAGTCTGGTGTGGAGTACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGTCGGAGGCCTTTTTGTaGGAAGAAGCTGAGGGCCCT +
Preference number: 5 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQSEAFL*EEAEGP
Trigger: AGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGA...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTTCATGTTCTTTAGCCTaGGGATTCCTGGGTTCTGGA +
Preference number: 5 (lower is better)
Translates to: GRKRSRVSHTGQGNKAQISCSLA*GFLGSG
Trigger: TCCAGAACCCAGGAATCCCAAGGCTAAAGAACATGA...AATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GTCACCACAGAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTTCATGTTCTTTAGCCTaGGGATTCCTGGGTTCTGGA +
Preference number: 5 (lower is better)
Translates to: VTTESQTATPFMVSWSTFSCSLA*GFLGSG
Trigger: TCCAGAACCCAGGAATCCCAAGGCTAAAGAACATGA...AAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTCTGTGGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGCTCATGTTCTTTAGCCTaGGGATTCCTGGGTTCTGGA +
Preference number: 5 (lower is better)
Translates to: GRGQGSATLDKGTRLRLCSCSLA*GFLGSG
Trigger: TCCAGAACCCAGGAATCCCAAGGCTAAAGAACATGA...GCATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATGAAGAAGATGTCAGTCTaGAGAACAGGCTGGGATCCC +
Preference number: 5 (lower is better)
Translates to: RKRSRVSHTGQGNKAQIMKKMSV*RTGWDP
Trigger: GGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTT...CATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GAATCCCAGACAGCCACACCTTTCATGGTCTCCTGGAGCACGTTTGTTACAGGAAAGAAGATGTCAGTCTaGAGAACAGGCTGGGATCCC +
Preference number: 5 (lower is better)
Translates to: ESQTATPFMVSWSTFVTGKKMSV*RTGWDP
Trigger: GGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTT...TCCTGTAACAAACGTGCTCCAGGAGACCATGAAAGGTGTGGCTGTCTGGGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCTCCAGGATGGAGTaGGGGACTGTCAGGACTTCT +
Preference number: 5 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHSSRME*GTVRTS
Trigger: AGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGCT...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGAGCTCCAGGATGGAGTaGGGGACTGTCAGGACTTCT +
Preference number: 5 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQSSRME*GTVRTS
Trigger: AGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGCT...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGCAGTCTCGGAGGCCTTTTaGTTGGAAGAAGCTGAGGGC +
Preference number: 5 (lower is better)
Translates to: ALGSIKIKETCLALPVTAVSEAF*LEEAEG
Trigger: GCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGAC...TGCTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp AAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGATTATTTCCCGTCCATGACCTaGTCTATCAAGATGGGCAAC +
Preference number: 5 (lower is better)
Translates to: KEEVKGQPHWTREQGSDYFPSMT*SIKMGN
Trigger: GTTGCCCATCTTGATAGACAAGGTCATGGACGGGAA...ATAATCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTAAGAAGATGTCAGTCTaGAGAACAGGCTGGGATCCC +
Preference number: 5 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFKKMSV*RTGWDP
Trigger: GGGATCCCAGCCTGTTCTCAAGACTGACATCTTCTT...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp TTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTGCAGGATCATGTTCTTTAGCCTaGGGATTCCTGGGTTCTGGA +
Preference number: 5 (lower is better)
Translates to: FKAAAASRVTAFRMEFAGSCSLA*GFLGSG
Trigger: TCCAGAACCCAGGAATCCCAAGGCTAAAGAACATGA...TCCTGCAAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAGCTGTGTGCTTTCATGTTCTTTAGCCTaGGGATTCCTGGGTTCTGGA +
Preference number: 5 (lower is better)
Translates to: VVHGAGIKHPIDQDSCVLSCSLA*GFLGSG
Trigger: TCCAGAACCCAGGAATCCCAAGGCTAAAGAACATGA...AAGCACACAGCTGTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR CAA 90 bp GAGGAAGGAAGAGGTCAAGGGTCAGCCACACTGGACAAGGGAACAAGGCTCAGAAAACACTGTGTCTCATaGCTCTTCTTCTTAAAGGCA +
Preference number: 5 (lower is better)
Translates to: EEGRGQGSATLDKGTRLRKHCVS*LFFLKA
Trigger: TGCCTTTAAGAAGAAGAGCAATGAGACACAGTGTTT...TCTGAGCCTTGTTCCCTTGTCCAGTGTGGCTGACCCTTGACCTCTTCCTTCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAGTTCCCGTCCATGACCTaGTCTATCAAGATGGGCAAC +
Preference number: 5 (lower is better)
Translates to: GLLGQSKSKKPVWLFLSQFPSMT*SIKMGN
Trigger: GTTGCCCATCTTGATAGACAAGGTCATGGACGGGAA...CTGTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTCCTGCTTCCAAGGCTaGGTAGAGCCAGACAGAAGG +
Preference number: 5 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLSCFQG*VEPDRR
Trigger: CCTTCTGTCTGGCTCTACCAAGCCTTGGAAGCAGGA...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp CGCTGCCCAGGAAGTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGAAAACACTGTGTCTCATaGCTCTTCTTCTTAAAGGCA +
Preference number: 5 (lower is better)
Translates to: RCPGSCSWCRNKASHRPRKHCVS*LFFLKA
Trigger: TGCCTTTAAGAAGAAGAGCAATGAGACACAGTGTTT...TCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR CAA 90 bp GCTGCCCAGGAAGTTGTTCATGGTGCCGGAATAAAGCATCCCATCGACCAAGACAAACACTGTGTCTCATaGCTCTTCTTCTTAAAGGCA +
Preference number: 5 (lower is better)
Translates to: AAQEVVHGAGIKHPIDQDKHCVS*LFFLKA
Trigger: TGCCTTTAAGAAGAAGAGCAATGAGACACAGTGTTT...GTCTTGGTCGATGGGATGCTTTATTCCGGCACCATGAACAACTTCCTGGGCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS-3UTR CAA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCCGTCCATGACCTaGTCTATCAAGATGGGCAAC +
Preference number: 5 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLFPSMT*SIKMGN
Trigger: GTTGCCCATCTTGATAGACAAGGTCATGGACGGGAA...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp CTGGTGTTCAAAGCAGCAGCTGCTTCTAGAGTGACAGCGTTCAGGATGGAGTTTAAACACTGTGTCTCATaGCTCTTCTTCTTAAAGGCA +
Preference number: 5 (lower is better)
Translates to: LVFKAAAASRVTAFRMEFKHCVS*LFFLKA
Trigger: TGCCTTTAAGAAGAAGAGCAATGAGACACAGTGTTT...AAACTCCATCCTGAACGCTGTCACTCTAGAAGCAGCTGCTGCTTTGAACACCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp GAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCTTCCTGTCACAAACACTGTGTCTCATaGCTCTTCTTCTTAAAGGCA +
Preference number: 5 (lower is better)
Translates to: EGSWVNQNQRNLSGSSCHKHCVS*LFFLKA
Trigger: TGCCTTTAAGAAGAAGAGCAATGAGACACAGTGTTT...GTGACAGGAAGAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS-3UTR CAA 90 bp TTTGTTACAGGAGGGCTCTTGGGTCAATCAAAATCAAAGAAACCTGTCTGGCTCAAACACTGTGTCTCATaGCTCTTCTTCTTAAAGGCA +
Preference number: 5 (lower is better)
Translates to: FVTGGLLGQSKSKKPVWLKHCVS*LFFLKA
Trigger: TGCCTTTAAGAAGAAGAGCAATGAGACACAGTGTTT...GAGCCAGACAGGTTTCTTTGATTTTGATTGACCCAAGAGCCCTCCTGTAACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029700.12
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS TCA 72 bp CCCGCAGCGCCCCCAGTGGGGAAGCGAGGAGGAGAGTaGGCACTCCCAGGAGCACGATGGCCAGGAGGACGG +
Preference number: 6 (lower is better)
Translates to: PAAPPVGKRGGE*ALPGARWPGGR
Trigger: CCGTCCTCCTGGCCATCGTGCTCCTGGGAGTGCTCACTCTCCTCCTCGCTTCCCCACTGGGGGCGCTGCGGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS GCA 72 bp ATGGAAGCTCCGCCTCCGACCCTGGTCAGCGGGACCTaGACACGCTCACGGGGAACGCCCGCCAGCTCAGGG +
Preference number: 6 (lower is better)
Translates to: MEAPPPTLVSGT*TRSRGTPASSG
Trigger: CCCTGAGCTGGCGGGCGTTCCCCGTGAGCGTGTGCAGGTCCCGCTGACCAGGGTCGGAGGCGGAGCTTCCAT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 72 bp ACCGCTGGGCAGCCATGGAAGCTCCGCCTCCGACCCTaGTCAGCGGGACCTGCACACGCTCACGGGGAACGC +
Preference number: 6 (lower is better)
Translates to: TAGQPWKLRLRP*SAGPAHAHGER
Trigger: GCGTTCCCCGTGAGCGTGTGCAGGTCCCGCTGACCAGGGTCGGAGGCGGAGCTTCCATGGCTGCCCAGCGGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS TCA 72 bp AGGAGGGGCCCATGGAGCAACTGCCTGGCCTCGGGCTaGCCTCTGAGCCCCGGTAAGTGGTCCAGCGGGAGG +
Preference number: 6 (lower is better)
Translates to: RRGPWSNCLASG*PLSPGKWSSGR
Trigger: CCTCCCGCTGGACCACTTACCGGGGCTCAGAGGTCAGCCCGAGGCCAGGCAGTTGCTCCATGGGCCCCTCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CAA 90 bp CGGGGGCTCCTGGCCATGGGGCCACGGGTGCATACCCACTCCGGGTaGCCGCGTTCCATGTCCTGCTTCCAAGGCTTGGTAGAGCCAGAC +
Preference number: 6 (lower is better)
Translates to: RGLLAMGPRVHTHSG*PRSMSCFQGLVEPD
Trigger: GTCTGGCTCTACCAAGCCTTGGAAGCAGGACATGGAACGCGGCAACCCGGAGTGGGTATGCACCCGTGGCCCCATGGCCAGGAGCCCCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 72 bp GGAGGTGCTGGTCCCTGCTCAGTGGAGCCTTTTCCCTaGGGGGCAGCATCCCACAGCCCTGAACCTTACCCC +
Preference number: 6 (lower is better)
Translates to: GGAGPCSVEPFP*GAASHSPEPYP
Trigger: GGGGTAAGGTTCAGGGCTGTGGGATGCTGCCCCCCAGGGAAAAGGCTCCACTGAGCAGGGACCAGCACCTCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS GCA 72 bp AAGCCTGCAAACACTGCACCCTGGGCGGGGGCCAGCTaGAGGTTTCGAACAGGCTCAGAGTCAGGGCTCAGC +
Preference number: 6 (lower is better)
Translates to: KPANTAPWAGAS*RFRTGSESGLS
Trigger: GCTGAGCCCTGACTCTGAGCCTGTTCGAAACCTGCAGCTGGCCCCCGCCCAGGGTGCAGTGTTTGCAGGCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CAA 72 bp CTGGCCATGGGGCCACGGGTGCATACCCACTCCGGGTaGCCGCGTTCCATGTCCTGCTTCCAAGGCTTGGTA +
Preference number: 6 (lower is better)
Translates to: LAMGPRVHTHSG*PRSMSCFQGLV
Trigger: TACCAAGCCTTGGAAGCAGGACATGGAACGCGGCAACCCGGAGTGGGTATGCACCCGTGGCCCCATGGCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS GCA 72 bp CCTGGTCCCGCCAACCTGCCACTGGGAGGTAAAGACTaGGTAGATGCGGGAAACAGAGGGAGAATCGGCGGG +
Preference number: 6 (lower is better)
Translates to: PGPANLPLGGKD*VDAGNRGRIGG
Trigger: CCCGCCGATTCTCCCTCTGTTTCCCGCATCTACGCAGTCTTTACCTCCCAGTGGCAGGTTGGCGGGACCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 72 bp CGGCGCCCAGATGGTTGTTGTCGGCATCTACGTCACTaGCAGAGGTCCTGTGGTCCTTGGAGGGCTGGAGGT +
Preference number: 6 (lower is better)
Translates to: RRPDGCCRHLRH*QRSCGPWRAGG
Trigger: ACCTCCAGCCCTCCAAGGACCACAGGACCTCTGCCAGTGACGTAGATGCCGACAACAACCATCTGGGCGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 72 bp AGGGACCCCGTGGAGGTACCCAGATACATGACCACATaGCTGCTCCCATCAAGGCCCCGAGCTGACTCCACA +
Preference number: 6 (lower is better)
Translates to: RDPVEVPRYMTT*LLPSRPRADST
Trigger: TGTGGAGTCAGCTCGGGGCCTTGATGGGAGCAGCCATGTGGTCATGTATCTGGGTACCTCCACGGGGTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CAA 90 bp TGGTTGTTGTCGGCATCTACGTCACTGGCAGAGGTCCTGTGGTCCTaGGAGGGCTGGAGGTGCTGGTCCCTGCTCAGTGGAGCCTTTTCC +
Preference number: 6 (lower is better)
Translates to: WLLSASTSLAEVLWS*EGWRCWSLLSGAFS
Trigger: GGAAAAGGCTCCACTGAGCAGGGACCAGCACCTCCAGCCCTCCAAGGACCACAGGACCTCTGCCAGTGACGTAGATGCCGACAACAACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS TCA 72 bp CATGACCACATGGCTGCTCCCATCAAGGCCCCGAGCTaGCTCCACAGCAAGCCGTGTGTACTCCACACCAGA +
Preference number: 6 (lower is better)
Translates to: HDHMAAPIKAPS*LHSKPCVLHTR
Trigger: TCTGGTGTGGAGTACACACGGCTTGCTGTGGAGTCAGCTCGGGGCCTTGATGGGAGCAGCCATGTGGTCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS GCA 72 bp CCAGGACGGCCTCTCGAGCCCCCACATAGAGAGTGTTaGCATCGTCACTCAGGAGCAGCGTGTCAAAGTCTC +
Preference number: 6 (lower is better)
Translates to: PGRPLEPPHREC*HRHSGAACQSL
Trigger: GAGACTTTGACACGCTGCTCCTGAGTGACGATGGCAACACTCTCTATGTGGGGGCTCGAGAGGCCGTCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000029700.12
ENSMUST00000125526.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS GCA 72 bp CAGGGCTCAGCTGAATCTCCTCCACGAGATAAGCACTaGTGTCCTGAGGCACCACAGCCTTGTGCAGGGACC +
Preference number: 6 (lower is better)
Translates to: QGSAESPPRDKH*CPEAPQPCAGT
Trigger: GGTCCCTGCACAAGGCTGTGGTGCCTCAGGACAGCAGTGCTTATCTCGTGGAGGAGATTCAGCTGAGCCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CAA 72 bp CAGGAGCAGCGTGTCAAAGTCTCGGAGGCCTTTTTGTaGGAAGAAGCTGAGGGCCCTGTGCCCGTCTCCAGC +
Preference number: 6 (lower is better)
Translates to: QEQRVKVSEAFL*EEAEGPVPVSS
Trigger: GCTGGAGACGGGCACAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGACTTTGACACGCTGCTCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000029700.12
ENSMUST00000125526.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS CAA 90 bp GCCATCGTCACTCAGGAGCAGCGTGTCAAAGTCTCGGAGGCCTTTTaGTTGGAAGAAGCTGAGGGCCCTGTGCCCGTCTCCAGCATGGTA +
Preference number: 6 (lower is better)
Translates to: AIVTQEQRVKVSEAF*LEEAEGPVPVSSMV
Trigger: TACCATGCTGGAGACGGGCACAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGACTTTGACACGCTGCTCCTGAGTGACGATGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000029700.12
ENSMUST00000125526.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS CAA 90 bp CATACCCACTCCGGGTTGCCGCGTTCCATGTCCTGCTTCCAAGGCTaGGTAGAGCCAGACAGAAGGCTGCAGAGTCTTGATTCAGGGTCC +
Preference number: 6 (lower is better)
Translates to: HTHSGLPRSMSCFQG*VEPDRRLQSLDSGS
Trigger: GGACCCTGAATCAAGACTCTGCAGCCTTCTGTCTGGCTCTACCAAGCCTTGGAAGCAGGACATGGAACGCGGCAACCCGGAGTGGGTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS GCA 72 bp CGTAGACACTGCAATTGGCCCTGGGAACTCTCCAGATaGCTCCAGAGAAGCCTGCAAACACTGCACCCTGGG +
Preference number: 6 (lower is better)
Translates to: RRHCNWPWELSR*LQRSLQTLHPG
Trigger: CCCAGGGTGCAGTGTTTGCAGGCTTCTCTGGAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTGTCTACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 72 bp AGGAGCAGCGTGTCAAAGTCTCGGAGGCCTTTTTGTTaGAAGAAGCTGAGGGCCCTGTGCCCGTCTCCAGCA +
Preference number: 6 (lower is better)
Translates to: RSSVSKSRRPFC*KKLRALCPSPA
Trigger: TGCTGGAGACGGGCACAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGACTTTGACACGCTGCTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000029700.12
ENSMUST00000125526.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS CAA 72 bp ACTCAGGAGCAGCGTGTCAAAGTCTCGGAGGCCTTTTaGTTGGAAGAAGCTGAGGGCCCTGTGCCCGTCTCC +
Preference number: 6 (lower is better)
Translates to: TQEQRVKVSEAF*LEEAEGPVPVS
Trigger: GGAGACGGGCACAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCGAGACTTTGACACGCTGCTCCTGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000029700.12
ENSMUST00000125526.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS GCA 72 bp CGGAGGCCTTTTTGTTGGAAGAAGCTGAGGGCCCTGTaGCCGTCTCCAGCATGGTATTTGACTCTGGGCATG +
Preference number: 6 (lower is better)
Translates to: RRPFCWKKLRAL*PSPAWYLTLGM
Trigger: CATGCCCAGAGTCAAATACCATGCTGGAGACGGGCACAGGGCCCTCAGCTTCTTCCAACAAAAAGGCCTCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000029700.12
ENSMUST00000125526.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS GCA 72 bp TGGCAAGCACACAGTCCACACAGCTCTCGTAGACACTaGAATTGGCCCTGGGAACTCTCCAGATGCCTCCAG +
Preference number: 6 (lower is better)
Translates to: WQAHSPHSSRRH*NWPWELSRCLQ
Trigger: CTGGAGGCATCTGGAGAGTTCCCAGGGCCAATTGCAGTGTCTACGAGAGCTGTGTGGACTGTGTGCTTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS TCA 72 bp GTCCTGGCTGTCTACCCAATAGGAGACCACAGGGTATaGGTAGCCGTTCTCAGTCGCCACACACTGGTAGAG +
Preference number: 6 (lower is better)
Translates to: VLAVYPIGDHRV*VAVLSRHTLVE
Trigger: CTCTACCAGTGTGTGGCGACTGAGAACGGCTACTCATACCCTGTGGTCTCCTATTGGGTAGACAGCCAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CCA 72 bp GGTATCATGTTCTTTAGCCTTGGGATTCCTGGGTTCTaGATATTCAAGGCCAGGACGGCCTCTCGAGCCCCC +
Preference number: 6 (lower is better)
Translates to: GIMFFSLGIPGF*IFKARTASRAP
Trigger: GGGGGCTCGAGAGGCCGTCCTGGCCTTGAATATCCAGAACCCAGGAATCCCAAGGCTAAAGAACATGATACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000029700.12
ENSMUST00000125526.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS CAA 90 bp TCCGACCAAGACAGCTGTGTGCTTGTGAACAGGGTCAAAGGGGCTTaGGCCCTTCCCGTCCATGACCTTGTCTATCAAGATGGGCAACAG +
Preference number: 6 (lower is better)
Translates to: SDQDSCVLVNRVKGA*ALPVHDLVYQDGQQ
Trigger: CTGTTGCCCATCTTGATAGACAAGGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCTGTTCACAAGCACACAGCTGTCTTGGTCGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185137.8
CDS TCA 72 bp GAACAGGGTCAAAGGGGCTTTGGCCCTTCCCGTCCATaGCCTTGTCTATCAAGATGGGCAACAGGAGGGAAT +
Preference number: 6 (lower is better)
Translates to: EQGQRGFGPSRP*PCLSRWATGGN
Trigger: ATTCCCTCCTGTTGCCCATCTTGATAGACAAGGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCTGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000185137.8
CDS CAA 90 bp ATCGACCAAGACAGCTGTGTGCTTGTGAACAGGGTCAAAGGGGCTTaGGCCCTTCCCGTCCATGACCTTGTCTATCAAGATGGGCAACAG +
Preference number: 6 (lower is better)
Translates to: IDQDSCVLVNRVKGA*ALPVHDLVYQDGQQ
Trigger: CTGTTGCCCATCTTGATAGACAAGGTCATGGACGGGAAGGGCCAAAGCCCCTTTGACCCTGTTCACAAGCACACAGCTGTCTTGGTCGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS TCA 72 bp CTACCACGTGCTCATCCATCAGAAAATGGTCCTTCATaGAGGTCAAGGCTTTGTCAGAGGAGGGGCCCATGG +
Preference number: 6 (lower is better)
Translates to: LPRAHPSENGPS*RSRLCQRRGPW
Trigger: CCATGGGCCCCTCCTCTGACAAAGCCTTGACCTTCATGAAGGACCATTTTCTGATGGATGAGCACGTGGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
CDS CAA 72 bp TCTCACTGGCTGGCCAGGGTATCATGTTCTTTAGCCTaGGGATTCCTGGGTTCTGGATATTCAAGGCCAGGA +
Preference number: 6 (lower is better)
Translates to: SHWLARVSCSLA*GFLGSGYSRPG
Trigger: TCCTGGCCTTGAATATCCAGAACCCAGGAATCCCAAGGCTAAAGAACATGATACCCTGGCCAGCCAGTGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000029700.12
ENSMUST00000125526.8
ENSMUST00000127436.8
ENSMUST00000147200.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8
ENSMUST00000184487.8
ENSMUST00000184876.8
CDS CCA 72 bp AGGGGTGTTCCTACCACGTGCTCATCCATCAGAAAATaGTCCTTCATGAAGGTCAAGGCTTTGTCAGAGGAG +
Preference number: 6 (lower is better)
Translates to: RGVPTTCSSIRK*SFMKVKALSEE
Trigger: CTCCTCTGACAAAGCCTTGACCTTCATGAAGGACCATTTTCTGATGGATGAGCACGTGGTAGGAACACCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000029700.12
ENSMUST00000107531.8
ENSMUST00000165898.8
ENSMUST00000166237.8
ENSMUST00000169222.8