RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SEMA3G (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021904

Ensembl transcript IDs: ENSMUST00000090180.4

Found 210 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGTTCCAGCCCGGGACTGAGAACTCGGAGAAAGGCAGGGGTAGGCTaGGGTGCAAGGCTCCTCCCACCAACCCCTAGTCTTTCCTGTAGG +
Preference number: 1 (lower is better)
Translates to: SSSPGLRTRRKAGVG*GARLLPPTPSLSCR
Trigger: CCTACAGGAAAGACTAGGGGTTGGTGGGAGGAGCCTTGCACCTCAGCCTACCCCTGCCTTTCTCCGAGTTCTCAGTCCCGGGCTGGAACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR TCA 90 bp ACTGGCTGCTGGTTTTCAGAGTGTCCGTTGCTAACCTCACCGGCCTaGGCATGCCCGCCTCACCCTCGGAAAGGTAGCCCATCCTTCGAG +
Preference number: 1 (lower is better)
Translates to: TGCWFSECPLLTSPA*ACPPHPRKGSPSFE
Trigger: CTCGAAGGATGGGCTACCTTTCCGAGGGTGAGGCGGGCATGCTCAGGCCGGTGAGGTTAGCAACGGACACTCTGAAAACCAGCAGCCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR TCA 90 bp CAGAACCTTCCCCTGGTCCCAGGAAGACACTCTGATGGTGAGGTGTaGGCACCCCAGCAAGCCTGGCCTGACAATGTGGGACCTGGGAAA +
Preference number: 1 (lower is better)
Translates to: QNLPLVPGRHSDGEV*APQQAWPDNVGPGK
Trigger: TTTCCCAGGTCCCACATTGTCAGGCCAGGCTTGCTGGGGTGCTCACACCTCACCATCAGAGTGTCTTCCTGGGACCAGGGGAAGGTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 90 bp TGGCCATTGTTCAGCAAGCTGGGAAAGAACCACCCGCCTTGCCTCTaGGCACAACCGGAAATGTGCTCCGGAAGCCACACCATCTCTGAG +
Preference number: 1 (lower is better)
Translates to: WPLFSKLGKNHPPCL*AQPEMCSGSHTISE
Trigger: CTCAGAGATGGTGTGGCTTCCGGAGCACATTTCCGGTTGTGCCCAGAGGCAAGGCGGGTGGTTCTTTCCCAGCTTGCTGAACAATGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR TCA 90 bp CCTCTGGGCACAACCGGAAATGTGCTCCGGAAGCCACACCATCTCTaGGAACAAATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGG +
Preference number: 1 (lower is better)
Translates to: PLGTTGNVLRKPHHL*EQIAGPLGLQVVWR
Trigger: CCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTATTTGTTCTCAGAGATGGTGTGGCTTCCGGAGCACATTTCCGGTTGTGCCCAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR GCA 90 bp TCAGAATGGCCATTGTTCAGCAAGCTGGGAAAGAACCACCCGCCTTaGCTCTGGGCACAACCGGAAATGTGCTCCGGAAGCCACACCATC +
Preference number: 1 (lower is better)
Translates to: SEWPLFSKLGKNHPP*LWAQPEMCSGSHTI
Trigger: GATGGTGTGGCTTCCGGAGCACATTTCCGGTTGTGCCCAGAGGCAAGGCGGGTGGTTCTTTCCCAGCTTGCTGAACAATGGCCATTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 90 bp AGTATCTGGCCTGCCCAGGGGCTCCTGAACCAACTAATGTCACCTTaGCTCTTGAGGACACCTGCTCATGGACCCATGGACCCATGGTCT +
Preference number: 1 (lower is better)
Translates to: SIWPAQGLLNQLMSP*LLRTPAHGPMDPWS
Trigger: AGACCATGGGTCCATGGGTCCATGAGCAGGTGTCCTCAAGAGCCAAGGTGACATTAGTTGGTTCAGGAGCCCCTGGGCAGGCCAGATACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 90 bp ACACCCACTCAGAGGGTCACTCAGAATGGCCATTGTTCAGCAAGCTaGGAAAGAACCACCCGCCTTGCCTCTGGGCACAACCGGAAATGT +
Preference number: 1 (lower is better)
Translates to: TPTQRVTQNGHCSAS*ERTTRLASGHNRKC
Trigger: ACATTTCCGGTTGTGCCCAGAGGCAAGGCGGGTGGTTCTTTCCCAGCTTGCTGAACAATGGCCATTCTGAGTGACCCTCTGAGTGGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 90 bp CCTGAACCAACTAATGTCACCTTGGCTCTTGAGGACACCTGCTCATaGACCCATGGACCCATGGTCTCACCTCTCTCTAGTTCCTCGTGG +
Preference number: 1 (lower is better)
Translates to: PEPTNVTLALEDTCS*THGPMVSPLSSSSW
Trigger: CCACGAGGAACTAGAGAGAGGTGAGACCATGGGTCCATGGGTCCATGAGCAGGTGTCCTCAAGAGCCAAGGTGACATTAGTTGGTTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR TCA 90 bp AAGCCTGGCCTGACAATGTGGGACCTGGGAAAGGGTATCATATTGTaGGACAACTCTTCCAAGTTTAAAAAGGGGGCAAGGGCCAGGCCC +
Preference number: 1 (lower is better)
Translates to: KPGLTMWDLGKGIIL*DNSSKFKKGARARP
Trigger: GGGCCTGGCCCTTGCCCCCTTTTTAAACTTGGAAGAGTTGTCTCACAATATGATACCCTTTCCCAGGTCCCACATTGTCAGGCCAGGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR GCA 90 bp ACTCCTCTCTCGTCTTCTTTTATCTACCAGTATCCCAAGGGACCATaGCCACAAACAGAAGGAAGCTGGGTTTGGGCAGGTAGAGTTCAG +
Preference number: 1 (lower is better)
Translates to: TPLSSSFIYQYPKGP*PQTEGSWVWAGRVQ
Trigger: CTGAACTCTACCTGCCCAAACCCAGCTTCCTTCTGTTTGTGGGCATGGTCCCTTGGGATACTGGTAGATAAAAGAAGACGAGAGAGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 90 bp TGTCCTCCAGATAAGCAAATGGTGCAAGTTCAGATCTCAGCACCCTaGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTT +
Preference number: 1 (lower is better)
Translates to: CPPDKQMVQVQISAP*GCQGRGNKPKVFGF
Trigger: AAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCATTTGCTTATCTGGAGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR GCA 90 bp CCAGATAAGCAAATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTaGCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTTGAAGTT +
Preference number: 1 (lower is better)
Translates to: PDKQMVQVQISAPWG*QGRGNKPKVFGFEV
Trigger: AACTTCAAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCATTTGCTTATCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp CGGCCTGAGCATGCCCGCCTCACCCTCGGAAAGGTAGCCCATCCTTCGAGGCACCCCACTTCCTCTTTCTaGTCCACAGAACCTTCCCCT +
Preference number: 2 (lower is better)
Translates to: RPEHARLTLGKVAHPSRHPTSSF*STEPSP
Trigger: AGGGGAAGGTTCTGTGGACCAGAAAGAGGAAGTGGG...GTGCCTCGAAGGATGGGCTACCTTTCCGAGGGTGAGGCGGGCATGCTCAGGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp GAAACTGCTGATGGCCAAGCTTCTCCCCAGCCCTTGTCACTCAGCCCCACCCCCCACAGAACCTTCCCCTaGTCCCAGGAAGACACTCTG +
Preference number: 2 (lower is better)
Translates to: ETADGQASPQPLSLSPTPHRTFP*SQEDTL
Trigger: CAGAGTGTCTTCCTGGGACCAGGGGAAGGTTCTGTG...GGGGGTGGGGCTGAGTGACAAGGGCTGGGGAGAAGCTTGGCCATCAGCAGTTTC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR TCA 90 bp GAGACAGATAAACAGCACAACCCCACCTCCTCAGCGCCTCCACCTTCTCTCACAAAGGCAGGGGTAGGCTaGGGTGCAAGGCTCCTCCCA +
Preference number: 2 (lower is better)
Translates to: ETDKQHNPTSSAPPPSLTKAGVG*GARLLP
Trigger: TGGGAGGAGCCTTGCACCTCAGCCTACCCCTGCCTT...TGTGAGAGAAGGTGGAGGCGCTGAGGAGGTGGGGTTGTGCTGTTTATCTGTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp CAGTTCCAGCCCGGGACTGAGAACTCGGAGAAAGGCAGGGGTAGGCTGAGGTGCCTCCTCTTTCCTAGCTaGGTGGGAGAGAGATACCGT +
Preference number: 2 (lower is better)
Translates to: QFQPGTENSEKGRGRLRCLLFPS*VGERYR
Trigger: ACGGTATCTCTCTCCCACCCAGCTAGGAAAGAGGAG...GCACCTCAGCCTACCCCTGCCTTTCTCCGAGTTCTCAGTCCCGGGCTGGAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CAA 90 bp CTCAGAATGGCCATTGTTCAGCAAGCTGGGAAAGAACCACCCGCCTaGCCTCTGGGCACAACCGGAAATGTGCTCCGGAAGCCACACCAT +
Preference number: 2 (lower is better)
Translates to: LRMAIVQQAGKEPPA*PLGTTGNVLRKPHH
Trigger: ATGGTGTGGCTTCCGGAGCACATTTCCGGTTGTGCCCAGAGGCAAGGCGGGTGGTTCTTTCCCAGCTTGCTGAACAATGGCCATTCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CAA 90 bp AAGTATCTGGCCTGCCCAGGGGCTCCTGAACCAACTAATGTCACCTaGGCTCTTGAGGACACCTGCTCATGGACCCATGGACCCATGGTC +
Preference number: 2 (lower is better)
Translates to: KYLACPGAPEPTNVT*ALEDTCSWTHGPMV
Trigger: GACCATGGGTCCATGGGTCCATGAGCAGGTGTCCTCAAGAGCCAAGGTGACATTAGTTGGTTCAGGAGCCCCTGGGCAGGCCAGATACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR GCA 90 bp AAGCAAATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAAAGAACCACCCGCCTTaGCTCTGGGCACAACCGGAA +
Preference number: 2 (lower is better)
Translates to: KQMVQVQISAPWGCQGRGKNHPP*LWAQPE
Trigger: TTCCGGTTGTGCCCAGAGGCAAGGCGGGTGGTTCTT...TCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCATTTGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp CACCCTGGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTTGAAGTCTGTGAGTAGGAGATaGGAGGGAGCTGAGGCAGGG +
Preference number: 2 (lower is better)
Translates to: HPGGARVEEINPKSSGLKSVSRR*EGAEAG
Trigger: CCCTGCCTCAGCTCCCTCCCATCTCCTACTCACAGA...CTTCAAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp CAAACAGAAGGAAGCTGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCAGAGGACACCTGCTCATaGACCCATGGACCCATGGTC +
Preference number: 2 (lower is better)
Translates to: QTEGSWVWAGRVQGFCPPEDTCS*THGPMV
Trigger: GACCATGGGTCCATGGGTCCATGAGCAGGTGTCCTC...TGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCAGCTTCCTTCTGTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR GCA 90 bp TCTAGATTCCAAAGCATGGAGACAGATAAACAGCACAACCCCACCTCCTCAGCGCAAGTGGTCTGGAGGTaGCAGTTCCAGCCCGGGACT +
Preference number: 2 (lower is better)
Translates to: SRFQSMETDKQHNPTSSAQVVWR*QFQPGT
Trigger: AGTCCCGGGCTGGAACTGGCACCTCCAGACCACTTG...CGCTGAGGAGGTGGGGTTGTGCTGTTTATCTGTCTCCATGCTTTGGAATCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR GCA 90 bp AAGCAAATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAATCCTCACCACTGGCTaGTGGTTTTCAGAGTGTCCG +
Preference number: 2 (lower is better)
Translates to: KQMVQVQISAPWGCQGRGILTTG*WFSECP
Trigger: CGGACACTCTGAAAACCAGCAGCCAGTGGTGAGGAT...TCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCATTTGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp CACAACCCCACCTCCTCAGCGCCTCCACCTTCTCTCACACCTCTGTGGGGCAAGAGTCTTTCCTGTAGGTaGTGGAGATTTCCTCTAAGA +
Preference number: 2 (lower is better)
Translates to: HNPTSSAPPPSLTPLWGKSLSCR*WRFPLR
Trigger: TCTTAGAGGAAATCTCCACCACCTACAGGAAAGACT...CTTGCCCCACAGAGGTGTGAGAGAAGGTGGAGGCGCTGAGGAGGTGGGGTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp TCTAGATTCCAAAGCATGGAGACAGATAAACAGCACAACCCCACCTCCTCAGCGCACCCGCCTTGCCTCTaGGCACAACCGGAAATGTGC +
Preference number: 2 (lower is better)
Translates to: SRFQSMETDKQHNPTSSAHPPCL*AQPEMC
Trigger: GCACATTTCCGGTTGTGCCCAGAGGCAAGGCGGGTG...CGCTGAGGAGGTGGGGTTGTGCTGTTTATCTGTCTCCATGCTTTGGAATCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR TCA 90 bp TGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCAGATAAGCAAATGGTGGAGATGGGAGGGAGCTaGGGCAGGGAATCATCTAGA +
Preference number: 2 (lower is better)
Translates to: WVWAGRVQGFCPPDKQMVEMGGS*GRESSR
Trigger: TCTAGATGATTCCCTGCCTCAGCTCCCTCCCATCTC...CACCATTTGCTTATCTGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR TCA 90 bp ACCCCCAGAACAGCAGGATTTACCATACCAGCTTTCTGTTCTCCCATAGAGAGATCTGATGGTGAGGTGTaGGCACCCCAGCAAGCCTGG +
Preference number: 2 (lower is better)
Translates to: TPRTAGFTIPAFCSPIERSDGEV*APQQAW
Trigger: CCAGGCTTGCTGGGGTGCTCACACCTCACCATCAGA...TCTCTCTATGGGAGAACAGAAAGCTGGTATGGTAAATCCTGCTGTTCTGGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp GAACAAATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGTCTTTCCTAGCTGGGTaGGAGAGAGATACCGTTGAG +
Preference number: 2 (lower is better)
Translates to: EQIAGPLGLQVVWRCQFQSFLAG*ERDTVE
Trigger: CTCAACGGTATCTCTCTCCCACCCAGCTAGGAAAGA...CTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTATTTGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp ATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAAATAAAGCCGATCCTCACCACTaGCTGCTGGTTTTCAGAGTG +
Preference number: 2 (lower is better)
Translates to: MVQVQISAPWGCQGRGNKADPHH*LLVFRV
Trigger: CACTCTGAAAACCAGCAGCCAGTGGTGAGGATCGGC...TTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp ATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAAATAAACTGCTCATGGACCCATaGACCCATGGTCTCACCTCT +
Preference number: 2 (lower is better)
Translates to: MVQVQISAPWGCQGRGNKLLMDP*THGLTS
Trigger: AGAGGTGAGACCATGGGTCCATGGGTCCATGAGCAG...TTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR GCA 90 bp TCTGTGGGGCAAGTGTTTCTTATCAGGTTCTACCTTAGGAATCTACTTTCCCCTAGGGGTAGGCTGAGGTaGAAGGCTCCTCCCACCAAC +
Preference number: 2 (lower is better)
Translates to: SVGQVFLIRFYLRNLLSPRGRLR*KAPPTN
Trigger: GTTGGTGGGAGGAGCCTTGCACCTCAGCCTACCCCT...AGGGGAAAGTAGATTCCTAAGGTAGAACCTGATAAGAAACACTTGCCCCACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CAA 90 bp AATTCAATAAGTATGCTTGGAAGACGGAGAAGCCACAAGGCCCATTaGAAAACAGACACAGTTCACACATGTGGGCGTTTTCAGGGTGTT +
Preference number: 2 (lower is better)
Translates to: NSISMLGRRRSHKAH*KTDTVHTCGRFQGV
Trigger: AACACCCTGAAAACGCCCACATGTGTGAACTGTGTCTGTTTTCAAATGGGCCTTGTGGCTTCTCCGTCTTCCAAGCATACTTATTGAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CCA 90 bp GCTCTGCTTTTTCTCATCAGAACTCAAGGCAACATGACAATAAAAATATCAACACCTTGGGACTACAAGTaGTCTGGAGGTGCCAGTTCC +
Preference number: 2 (lower is better)
Translates to: ALLFLIRTQGNMTIKISTPWDYK*SGGASS
Trigger: GGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGG...TGTTGATATTTTTATTGTCATGTTGCCTTGAGTTCTGATGAGAAAAAGCAGAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR GCA 90 bp GCTCTGCTTTTTCTCATCAGAACTCAAGGCAACATGACAATAAAAATATCAACATCAGCACCCTGGGGGTaGCAGGGTAGAGGAAATAAA +
Preference number: 2 (lower is better)
Translates to: ALLFLIRTQGNMTIKISTSAPWG*QGRGNK
Trigger: TTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGA...TGTTGATATTTTTATTGTCATGTTGCCTTGAGTTCTGATGAGAAAAAGCAGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR TCA 72 bp CTCCTCTTTCCTAGCTGGGTGGGAGAGAGATACCGTTaGGTCCCCCAGCCCAGCCCGACCACCTGCTCCTCA +
Preference number: 3 (lower is better)
Translates to: LLFPSWVGERYR*VPQPSPTTCSS
Trigger: TGAGGAGCAGGTGGTCGGGCTGGGCTGGGGGACTCAACGGTATCTCTCTCCCACCCAGCTAGGAAAGAGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CAA 90 bp AAGCAAATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAGCTTCTCCCCAGCCCTaGTCACTCAGCCCCACCCCC +
Preference number: 3 (lower is better)
Translates to: KQMVQVQISAPWGCQGRGASPQP*SLSPTP
Trigger: GGGGGTGGGGCTGAGTGACAAGGGCTGGGGAGAAGC...TCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCATTTGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR TCA 72 bp CCGGGACTGAGAACTCGGAGAAAGGCAGGGGTAGGCTaGGGTGCAAGGCTCCTCCCACCAACCCCTAGTCTT +
Preference number: 3 (lower is better)
Translates to: PGLRTRRKAGVG*GARLLPPTPSL
Trigger: AAGACTAGGGGTTGGTGGGAGGAGCCTTGCACCTCAGCCTACCCCTGCCTTTCTCCGAGTTCTCAGTCCCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR TCA 72 bp CAGGCAACCTCCAGGTCCCAGCAGTTCCTGCCTCTGTaGGTAGGAGATGGGAGGGAGCTGAGGCAGGGAATC +
Preference number: 3 (lower is better)
Translates to: QATSRSQQFLPL*VGDGRELRQGI
Trigger: GATTCCCTGCCTCAGCTCCCTCCCATCTCCTACTCACAGAGGCAGGAACTGCTGGGACCTGGAGGTTGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CAA 90 bp GAACAAATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGGGGAGAGAGATACCGTaGAGTCCCCCAGCCCAGCCC +
Preference number: 3 (lower is better)
Translates to: EQIAGPLGLQVVWRCQFQGREIP*SPPAQP
Trigger: GGGCTGGGCTGGGGGACTCAACGGTATCTCTCTCCC...CTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTATTTGTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp TTCAGCAAGCTGGGAAAGAACCACCCGCCTTGCCTCTaGGCACAACCGGAAATGTGCTCCGGAAGCCACACC +
Preference number: 3 (lower is better)
Translates to: FSKLGKNHPPCL*AQPEMCSGSHT
Trigger: GGTGTGGCTTCCGGAGCACATTTCCGGTTGTGCCCAGAGGCAAGGCGGGTGGTTCTTTCCCAGCTTGCTGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp ACAAAGCCCAGGAGGCCGATCCTCACCACTGGCTGCTaGTTTTCAGAGTGTCCGTTGCTAACCTCACCGGCC +
Preference number: 3 (lower is better)
Translates to: TKPRRPILTTGC*FSECPLLTSPA
Trigger: GGCCGGTGAGGTTAGCAACGGACACTCTGAAAACCAGCAGCCAGTGGTGAGGATCGGCCTCCTGGGCTTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR GCA 72 bp ATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTaGCAGTTCCAGCCCGGGACTGAGAACTCGGAGAAA +
Preference number: 3 (lower is better)
Translates to: IAGPLGLQVVWR*QFQPGTENSEK
Trigger: TTTCTCCGAGTTCTCAGTCCCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR GCA 72 bp CCATTGTTCAGCAAGCTGGGAAAGAACCACCCGCCTTaGCTCTGGGCACAACCGGAAATGTGCTCCGGAAGC +
Preference number: 3 (lower is better)
Translates to: PLFSKLGKNHPP*LWAQPEMCSGS
Trigger: GCTTCCGGAGCACATTTCCGGTTGTGCCCAGAGGCAAGGCGGGTGGTTCTTTCCCAGCTTGCTGAACAATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp CAATCAGGAGTTCTGGACTCCTCTTTCCTAGCTGGGTaGGAGAGAGATACCGTTGAGTCCCCCAGCCCAGCC +
Preference number: 3 (lower is better)
Translates to: QSGVLDSSFLAG*ERDTVESPSPA
Trigger: GGCTGGGCTGGGGGACTCAACGGTATCTCTCTCCCACCCAGCTAGGAAAGAGGAGTCCAGAACTCCTGATTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp GAACAAATAGCAGGCCCCTTGGGACTACAAGTGGTCTaGAGGTGCCAGTTCCAGCCCGGGACTGAGAACTCG +
Preference number: 3 (lower is better)
Translates to: EQIAGPLGLQVV*RCQFQPGTENS
Trigger: CGAGTTCTCAGTCCCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTATTTGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp GCCCTAGACAAAGCCCAGGAGGCCGATCCTCACCACTaGCTGCTGGTTTTCAGAGTGTCCGTTGCTAACCTC +
Preference number: 3 (lower is better)
Translates to: ALDKAQEADPHH*LLVFRVSVANL
Trigger: GAGGTTAGCAACGGACACTCTGAAAACCAGCAGCCAGTGGTGAGGATCGGCCTCCTGGGCTTTGTCTAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp CCCCACTTCCTCTTTCTGGTCCACAGAACCTTCCCCTaGTCCCAGGAAGACACTCTGATGGTGAGGTGTGAG +
Preference number: 3 (lower is better)
Translates to: PHFLFLVHRTFP*SQEDTLMVRCE
Trigger: CTCACACCTCACCATCAGAGTGTCTTCCTGGGACCAGGGGAAGGTTCTGTGGACCAGAAAGAGGAAGTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp CTCTTGAGGACACCTGCTCATGGACCCATGGACCCATaGTCTCACCTCTCTCTAGTTCCTCGTGGCCCTAGA +
Preference number: 3 (lower is better)
Translates to: LLRTPAHGPMDP*SHLSLVPRGPR
Trigger: TCTAGGGCCACGAGGAACTAGAGAGAGGTGAGACCATGGGTCCATGGGTCCATGAGCAGGTGTCCTCAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp TGTGGGCGTTTTCAGGGTGTTCGTAGTACAGTACCGTaGGCAAGGTGGCAGTGGGCAAGAGCTGTCCTATGT +
Preference number: 3 (lower is better)
Translates to: CGRFQGVRSTVP*ARWQWARAVLC
Trigger: ACATAGGACAGCTCTTGCCCACTGCCACCTTGCCCACGGTACTGTACTACGAACACCCTGAAAACGCCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR GCA 72 bp GAACCAACTAATGTCACCTTGGCTCTTGAGGACACCTaGTCATGGACCCATGGACCCATGGTCTCACCTCTC +
Preference number: 3 (lower is better)
Translates to: EPTNVTLALEDT*SWTHGPMVSPL
Trigger: GAGAGGTGAGACCATGGGTCCATGGGTCCATGAGCAGGTGTCCTCAAGAGCCAAGGTGACATTAGTTGGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR GCA 72 bp TCCTGTGTTTTCCAGGGCCATTTCCCCAGAGGACCCTaGCCAGAGCTTGCCAAACCTAGACTCTGTCCAAAT +
Preference number: 3 (lower is better)
Translates to: SCVFQGHFPRGP*PELAKPRLCPN
Trigger: ATTTGGACAGAGTCTAGGTTTGGCAAGCTCTGGGCAGGGTCCTCTGGGGAAATGGCCCTGGAAAACACAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp TATCCCAAGGGACCATGCCCACAAACAGAAGGAAGCTaGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCT +
Preference number: 3 (lower is better)
Translates to: YPKGPCPQTEGS*VWAGRVQGFCP
Trigger: AGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCAGCTTCCTTCTGTTTGTGGGCATGGTCCCTTGGGATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR TCA 72 bp ACAACCGGAAATGTGCTCCGGAAGCCACACCATCTCTaGGAACAAATAGCAGGCCCCTTGGGACTACAAGTG +
Preference number: 3 (lower is better)
Translates to: TTGNVLRKPHHL*EQIAGPLGLQV
Trigger: CACTTGTAGTCCCAAGGGGCCTGCTATTTGTTCTCAGAGATGGTGTGGCTTCCGGAGCACATTTCCGGTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR GCA 72 bp CAAATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTaGCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGG +
Preference number: 3 (lower is better)
Translates to: QMVQVQISAPWG*QGRGNKPKVFG
Trigger: CCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCATTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp ACCTCCTCAGCGCCTCCACCTTCTCTCACACCTCTGTaGGGCAAGTGTTTCTTATCAGGTTCTACCTTAGGA +
Preference number: 3 (lower is better)
Translates to: TSSAPPPSLTPL*GKCFLSGSTLG
Trigger: TCCTAAGGTAGAACCTGATAAGAAACACTTGCCCCACAGAGGTGTGAGAGAAGGTGGAGGCGCTGAGGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp ACTAATGTCACCTTGGCTCTTGAGGACACCTGCTCATaGACCCATGGACCCATGGTCTCACCTCTCTCTAGT +
Preference number: 3 (lower is better)
Translates to: TNVTLALEDTCS*THGPMVSPLSS
Trigger: ACTAGAGAGAGGTGAGACCATGGGTCCATGGGTCCATGAGCAGGTGTCCTCAAGAGCCAAGGTGACATTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR-3UTR CAA 90 bp TGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCAGATAAGCAAATGGTGATGTCACCTTGGCTCTaGAGGACACCTGCTCATGGA +
Preference number: 3 (lower is better)
Translates to: WVWAGRVQGFCPPDKQMVMSPWL*RTPAHG
Trigger: TCCATGAGCAGGTGTCCTCAAGAGCCAAGGTGACAT...CACCATTTGCTTATCTGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp GGAGCTGAGGCAGGGAATCATCTAGATTCCAAAGCATaGAGACAGATAAACAGCACAACCCCACCTCCTCAG +
Preference number: 3 (lower is better)
Translates to: GAEAGNHLDSKA*RQINSTTPPPQ
Trigger: CTGAGGAGGTGGGGTTGTGCTGTTTATCTGTCTCCATGCTTTGGAATCTAGATGATTCCCTGCCTCAGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR GCA 72 bp TCGTCTTCTTTTATCTACCAGTATCCCAAGGGACCATaGCCACAAACAGAAGGAAGCTGGGTTTGGGCAGGT +
Preference number: 3 (lower is better)
Translates to: SSSFIYQYPKGP*PQTEGSWVWAG
Trigger: ACCTGCCCAAACCCAGCTTCCTTCTGTTTGTGGGCATGGTCCCTTGGGATACTGGTAGATAAAAGAAGACGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp AGGCTCCTCCCACCAACCCCTAGTCTTTCCTGTAGGTaGTGGAGATTTCCTCTAAGAGGTAATCAATCAGGA +
Preference number: 3 (lower is better)
Translates to: RLLPPTPSLSCR*WRFPLRGNQSG
Trigger: TCCTGATTGATTACCTCTTAGAGGAAATCTCCACCACCTACAGGAAAGACTAGGGGTTGGTGGGAGGAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp GATAAGCAAATGGTGCAAGTTCAGATCTCAGCACCCTaGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGTC +
Preference number: 3 (lower is better)
Translates to: DKQMVQVQISAP*GCQGRGNKPKV
Trigger: GACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCATTTGCTTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CCA 72 bp CTCCTCCCACCAACCCCTAGTCTTTCCTGTAGGTGGTaGAGATTTCCTCTAAGAGGTAATCAATCAGGAGTT +
Preference number: 3 (lower is better)
Translates to: LLPPTPSLSCRW*RFPLRGNQSGV
Trigger: AACTCCTGATTGATTACCTCTTAGAGGAAATCTCCACCACCTACAGGAAAGACTAGGGGTTGGTGGGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR TCA 72 bp CTGACAATGTGGGACCTGGGAAAGGGTATCATATTGTaGGACAACTCTTCCAAGTTTAAAAAGGGGGCAAGG +
Preference number: 3 (lower is better)
Translates to: LTMWDLGKGIIL*DNSSKFKKGAR
Trigger: CCTTGCCCCCTTTTTAAACTTGGAAGAGTTGTCTCACAATATGATACCCTTTCCCAGGTCCCACATTGTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp CACAACCCCACCTCCTCAGCGCCTCCACCTTCTCTCACACCTCTGTGGGGCAAGGCAGACGAGGCACACTaGGGCTGGGACCAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: HNPTSSAPPPSLTPLWGKADEAH*GWDQGW
Trigger: CCAGCCCTGGTCCCAGCCCCAGTGTGCCTCGTCTGC...CTTGCCCCACAGAGGTGTGAGAGAAGGTGGAGGCGCTGAGGAGGTGGGGTTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp CGGCCTGAGCATGCCCGCCTCACCCTCGGAAAGGTAGCCCATCCTTCGAGGCACGCCAAAGGGTCGGCCTaGCTGTGCGGTCATCTTGCT +
Preference number: 4 (lower is better)
Translates to: RPEHARLTLGKVAHPSRHAKGSA*LCGHLA
Trigger: AGCAAGATGACCGCACAGCCAGGCCGACCCTTTGGC...GTGCCTCGAAGGATGGGCTACCTTTCCGAGGGTGAGGCGGGCATGCTCAGGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp GAAACTGCTGATGGCCAAGCTTCTCCCCAGCCCTTGTCACTCAGCCCCACCCCCGAGGGAAGGGCACCTTaGCCCCATAGGGTCCCCACT +
Preference number: 4 (lower is better)
Translates to: ETADGQASPQPLSLSPTPEGRAP*PHRVPT
Trigger: AGTGGGGACCCTATGGGGGCAAGGTGCCCTTCCCTC...GGGGGTGGGGCTGAGTGACAAGGGCTGGGGAGAAGCTTGGCCATCAGCAGTTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp ATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGCCCGGGCCGGGCCACACCCAGTaGAGAGCCCACATACAGCGT +
Preference number: 4 (lower is better)
Translates to: IAGPLGLQVVWRCQFQPGPGHTQ*RAHIQR
Trigger: ACGCTGTATGTGGGCTCTCCACTGGGTGTGGCCCGG...CCCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp AATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGCCCGGTCACACTGGTGCAGCTaGAGCCGGGCCACACCCAGT +
Preference number: 4 (lower is better)
Translates to: NSRPLGTTSGLEVPVPARSHWCS*SRATPS
Trigger: ACTGGGTGTGGCCCGGCTGCAGCTGCACCAGTGTGA...CCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp CAGTTCCAGCCCGGGACTGAGAACTCGGAGAAAGGCAGGGGTAGGCTGAGGTGCGCCCTGCCCAGCTCTTaGCCTTCGCTTGCTTTCCCT +
Preference number: 4 (lower is better)
Translates to: QFQPGTENSEKGRGRLRCALPSS*PSLAFP
Trigger: AGGGAAAGCAAGCGAAGGGCAAGAGCTGGGCAGGGC...GCACCTCAGCCTACCCCTGCCTTTCTCCGAGTTCTCAGTCCCGGGCTGGAACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp GAAACTGCTGATGGCCAAGCTTCTCCCCAGCCCTTGTCACTCAGCCCCACCCCCCGTCTGGGTAGTCCTTaGTGCTGCCAAAGGGTCGGC +
Preference number: 4 (lower is better)
Translates to: ETADGQASPQPLSLSPTPRLGSP*CCQRVG
Trigger: GCCGACCCTTTGGCAGCACCAAGGACTACCCAGACG...GGGGGTGGGGCTGAGTGACAAGGGCTGGGGAGAAGCTTGGCCATCAGCAGTTTC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp CGGCCTGAGCATGCCCGCCTCACCCTCGGAAAGGTAGCCCATCCTTCGAGGCACGTCCAGTTGCACAGCTaGAATCACCTCCAGGGCAAA +
Preference number: 4 (lower is better)
Translates to: RPEHARLTLGKVAHPSRHVQLHS*NHLQGK
Trigger: TTTGCCCTGGAGGTGATTGCAGCTGTGCAACTGGAC...GTGCCTCGAAGGATGGGCTACCTTTCCGAGGGTGAGGCGGGCATGCTCAGGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp AATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGCCCGGCTTCTGTCCTGGCTGTaGCAGCCACAAGACCTCCCG +
Preference number: 4 (lower is better)
Translates to: NSRPLGTTSGLEVPVPARLLSWL*QPQDLP
Trigger: CGGGAGGTCTTGTGGCTGCCACAGCCAGGACAGAAG...CCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp GAAACTGCTGATGGCCAAGCTTCTCCCCAGCCCTTGTCACTCAGCCCCACCCCCCCACAGGCCAGCAGATaGGTCCGGTTATGGGGTTGT +
Preference number: 4 (lower is better)
Translates to: ETADGQASPQPLSLSPTPPQASR*VRLWGC
Trigger: ACAACCCCATAACCGGACCCATCTGCTGGCCTGTGG...GGGGGTGGGGCTGAGTGACAAGGGCTGGGGAGAAGCTTGGCCATCAGCAGTTTC
61% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp ATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGCCCGGGTTTTGGCTCTGGCCCTaGCCCAGACACTGCACAGCA +
Preference number: 4 (lower is better)
Translates to: IAGPLGLQVVWRCQFQPGFWLWP*PRHCTA
Trigger: TGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAAA...CCCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp ATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGCCCGGGCAGCCTGAGGAGACTTaGGCAGGCACTCAAGGAAGG +
Preference number: 4 (lower is better)
Translates to: IAGPLGLQVVWRCQFQPGQPEET*AGTQGR
Trigger: CCTTCCTTGAGTGCCTGCCCAAGTCTCCTCAGGCTG...CCCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp ATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGCCCGGGCCTTATACCAAGTCTTaGGGGAGGCAGAGGCCAGGC +
Preference number: 4 (lower is better)
Translates to: IAGPLGLQVVWRCQFQPGPYTKS*GRQRPG
Trigger: GCCTGGCCTCTGCCTCCCCCAAGACTTGGTATAAGG...CCCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp AATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGCCCGGAGCGGGCACAGGCAGTaGCATCCCAAGCACAGTATG +
Preference number: 4 (lower is better)
Translates to: NSRPLGTTSGLEVPVPARSGHRQ*HPKHSM
Trigger: CATACTGTGCTTGGGATGGCACTGCCTGTGCCCGCT...CCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp CAGTTCCAGCCCGGGACTGAGAACTCGGAGAAAGGCAGGGGTAGGCTGAGGTGCTGCTCTTCATCTTCTTaGCCAGTTCCAGCCCTGCCC +
Preference number: 4 (lower is better)
Translates to: QFQPGTENSEKGRGRLRCCSSSS*PVPALP
Trigger: GGGCAGGGCTGGAACTGGGCAAGAAGATGAAGAGCA...GCACCTCAGCCTACCCCTGCCTTTCTCCGAGTTCTCAGTCCCGGGCTGGAACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp ACCCCACCTCCTCAGCGCCTCCACCTTCTCTCACACCTCTGTGGGGCAAGTGTTGCTTTGTTTTGGCTCTaGCCCTGGCCCAGACACTGC +
Preference number: 4 (lower is better)
Translates to: TPPPQRLHLLSHLCGASVALFWL*PWPRHC
Trigger: GCAGTGTCTGGGCCAGGGCCAGAGCCAAAACAAAGC...AACACTTGCCCCACAGAGGTGTGAGAGAAGGTGGAGGCGCTGAGGAGGTGGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp ACCCCACCTCCTCAGCGCCTCCACCTTCTCTCACACCTCTGTGGGGCAAGTGTTGGGCAAAGGGCCCATTaGAGACCTCCCAGATGTCTA +
Preference number: 4 (lower is better)
Translates to: TPPPQRLHLLSHLCGASVGQRAH*RPPRCL
Trigger: TAGACATCTGGGAGGTCTTCAATGGGCCCTTTGCCC...AACACTTGCCCCACAGAGGTGTGAGAGAAGGTGGAGGCGCTGAGGAGGTGGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp ATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGCCCGGGCAGTCCCTAGGAAGATaGCATCATAGGTCCCATCCT +
Preference number: 4 (lower is better)
Translates to: IAGPLGLQVVWRCQFQPGQSLGR*HHRSHP
Trigger: AGGATGGGACCTATGATGTCATCTTCCTAGGGACTG...CCCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp TGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCAGATAAGCAAATGGTGCAGCGCACTGCAGCCTaGGGAGACTTGGGCAGGCAC +
Preference number: 4 (lower is better)
Translates to: WVWAGRVQGFCPPDKQMVQRTAA*GDLGRH
Trigger: GTGCCTGCCCAAGTCTCCTCAGGCTGCAGTGCGCTG...CACCATTTGCTTATCTGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp AAGCAAATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAGACCAGGGCTGGGGATaGCCACATGGAACAGAAGGC +
Preference number: 4 (lower is better)
Translates to: KQMVQVQISAPWGCQGRGDQGWG*PHGTEG
Trigger: GCCTTCTGTTCCATGTGGGCATCCCCAGCCCTGGTC...TCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCATTTGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp GAGACAGATAAACAGCACAACCCCACCTCCTCAGCGCCTCCACCTTCTCTCACACTGGGTAGTCCTTGGTaGTGCCAAAGGGTCGGCCTG +
Preference number: 4 (lower is better)
Translates to: ETDKQHNPTSSAPPPSLTLGSPW*CQRVGL
Trigger: CAGGCCGACCCTTTGGCAGCACCAAGGACTACCCAG...TGTGAGAGAAGGTGGAGGCGCTGAGGAGGTGGGGTTGTGCTGTTTATCTGTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp CACCCTGGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTTGAAGGGCTGGGACCAGGGCTaGGGATGCCCACATGGAACA +
Preference number: 4 (lower is better)
Translates to: HPGGARVEEINPKSSGLKGWDQG*GCPHGT
Trigger: TGTTCCATGTGGGCATCCCCAGCCCTGGTCCCAGCC...CTTCAAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CAA 72 bp GCCATTGTTCAGCAAGCTGGGAAAGAACCACCCGCCTaGCCTCTGGGCACAACCGGAAATGTGCTCCGGAAG +
Preference number: 4 (lower is better)
Translates to: AIVQQAGKEPPA*PLGTTGNVLRK
Trigger: CTTCCGGAGCACATTTCCGGTTGTGCCCAGAGGCAAGGCGGGTGGTTCTTTCCCAGCTTGCTGAACAATGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp AATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGCCCGGACTCATCCAGGTACATaGCTTGGAGGTCTAGGGAAC +
Preference number: 4 (lower is better)
Translates to: NSRPLGTTSGLEVPVPARTHPGT*LGGLGN
Trigger: GTTCCCTAGACCTCCAAGTCATGTACCTGGATGAGT...CCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp CAAACAGAAGGAAGCTGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCACGGCTGATGGTGACATaGCCTGGGCCACCATCTGGT +
Preference number: 4 (lower is better)
Translates to: QTEGSWVWAGRVQGFCPPRLMVT*PGPPSG
Trigger: ACCAGATGGTGGCCCAGGTCATGTCACCATCAGCCG...TGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCAGCTTCCTTCTGTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp CACCCTGGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTTGAAGGTTGGAAGGCTCCTGTaGCACAGGCCAGCAGATGGG +
Preference number: 4 (lower is better)
Translates to: HPGGARVEEINPKSSGLKVGRLL*HRPADG
Trigger: CCCATCTGCTGGCCTGTGGCACAGGAGCCTTCCAAC...CTTCAAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp ATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAAATAAATCTAGCTGGTCAAAGTaGGTCTCAGCCCCACCCGGG +
Preference number: 4 (lower is better)
Translates to: MVQVQISAPWGCQGRGNKSSWSK*VSAPPG
Trigger: CCCGGGTGGGGCTGAGACTCACTTTGACCAGCTAGA...TTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp TGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCAGATAAGCAAATGGTGGGGTCGGCCTGGCTGTaGGGTCATCTTGCTAGGACA +
Preference number: 4 (lower is better)
Translates to: WVWAGRVQGFCPPDKQMVGSAWL*GHLART
Trigger: TGTCCTAGCAAGATGACCGCACAGCCAGGCCGACCC...CACCATTTGCTTATCTGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp TCTAGATTCCAAAGCATGGAGACAGATAAACAGCACAACCCCACCTCCTCAGCGCCCTGGCCCAGACACTaGACAGCAGGGTTGCCATGG +
Preference number: 4 (lower is better)
Translates to: SRFQSMETDKQHNPTSSAPWPRH*TAGLPW
Trigger: CCATGGCAACCCTGCTGTGCAGTGTCTGGGCCAGGG...CGCTGAGGAGGTGGGGTTGTGCTGTTTATCTGTCTCCATGCTTTGGAATCTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp GAGACAGATAAACAGCACAACCCCACCTCCTCAGCGCCTCCACCTTCTCTCACAGCTCAGCCAGCACCCTaGTCTTCATCTTCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: ETDKQHNPTSSAPPPSLTAQPAP*SSSSCP
Trigger: TGGGCAAGAAGATGAAGAGCAGGGTGCTGGCTGAGC...TGTGAGAGAAGGTGGAGGCGCTGAGGAGGTGGGGTTGTGCTGTTTATCTGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp CAAACAGAAGGAAGCTGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCACTGCAACACCTCGTCTaGGTAGTCCTTGGTGCTGCC +
Preference number: 4 (lower is better)
Translates to: QTEGSWVWAGRVQGFCPPLQHLV*VVLGAA
Trigger: GGCAGCACCAAGGACTACCCAGACGAGGTGTTGCAG...TGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCAGCTTCCTTCTGTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CAA 72 bp CCATACACCCACTCAGAGGGTCACTCAGAATGGCCATaGTTCAGCAAGCTGGGAAAGAACCACCCGCCTTGC +
Preference number: 4 (lower is better)
Translates to: PYTHSEGHSEWP*FSKLGKNHPPC
Trigger: GCAAGGCGGGTGGTTCTTTCCCAGCTTGCTGAACAATGGCCATTCTGAGTGACCCTCTGAGTGGGTGTATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp CACCCTGGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTTGAAGACACCAGCCGGGCCTTaGGGAAAGTGCTCCATTTGT +
Preference number: 4 (lower is better)
Translates to: HPGGARVEEINPKSSGLKTPAGP*GKCSIC
Trigger: ACAAATGGAGCACTTTCCTCAAGGCCCGGCTGGTGT...CTTCAAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp TCTAGATTCCAAAGCATGGAGACAGATAAACAGCACAACCCCACCTCCTCAGCGGAGCCAAGTGAGTTTTaGCCAGGACAGGGCGGCCAC +
Preference number: 4 (lower is better)
Translates to: SRFQSMETDKQHNPTSSAEPSEF*PGQGGH
Trigger: GTGGCCGCCCTGTCCTGGTCAAAACTCACTTGGCTC...CGCTGAGGAGGTGGGGTTGTGCTGTTTATCTGTCTCCATGCTTTGGAATCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp TGGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTTGAAGTTCAGCCGGGGGTCTGGCCATaGCTGATCCAGTCTCAGAGA +
Preference number: 4 (lower is better)
Translates to: WGCQGRGNKPKVFGFEVQPGVWP*LIQSQR
Trigger: TCTCTGAGACTGGATCAGGCATGGCCAGACCCCCGG...CTGAACTTCAAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp CAAACAGAAGGAAGCTGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCAAGACCCGCACGAAGTTaGCACACTCCGTCAAAGGGT +
Preference number: 4 (lower is better)
Translates to: QTEGSWVWAGRVQGFCPPRPARS*HTPSKG
Trigger: ACCCTTTGACGGAGTGTGCCAACTTCGTGCGGGTCT...TGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCAGCTTCCTTCTGTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp TCTAGATTCCAAAGCATGGAGACAGATAAACAGCACAACCCCACCTCCTCAGCGACAGCAGGGTTGCCATaGCGTATGTCCTGCCGACGG +
Preference number: 4 (lower is better)
Translates to: SRFQSMETDKQHNPTSSATAGLP*RMSCRR
Trigger: CCGTCGGCAGGACATACGCCATGGCAACCCTGCTGT...CGCTGAGGAGGTGGGGTTGTGCTGTTTATCTGTCTCCATGCTTTGGAATCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp CAAACAGAAGGAAGCTGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCAGGCACTCAAGGAAGGTaGTGTTGTGCTCTGTGCCAA +
Preference number: 4 (lower is better)
Translates to: QTEGSWVWAGRVQGFCPPGTQGR*CCALCQ
Trigger: TTGGCACAGAGCACAACAGCACCTTCCTTGAGTGCC...TGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCAGCTTCCTTCTGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp ATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAAATAAAAAGGTGCAGATGGGTTaGAAGGCTCCTGTGCCACAG +
Preference number: 4 (lower is better)
Translates to: MVQVQISAPWGCQGRGNKKVQMG*KAPVPQ
Trigger: CTGTGGCACAGGAGCCTTCCAACCCATCTGCACCTT...TTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp ACCCCCAGAACAGCAGGATTTACCATACCAGCTTTCTGTTCTCCCATAGAGAGAGGCTCTTCCCGGCCTTaGGCCACAGCAGGAACACAT +
Preference number: 4 (lower is better)
Translates to: TPRTAGFTIPAFCSPIERGSSRP*ATAGTH
Trigger: ATGTGTTCCTGCTGTGGCCCAAGGCCGGGAAGAGCC...TCTCTCTATGGGAGAACAGAAAGCTGGTATGGTAAATCCTGCTGTTCTGGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp GAAGGAAGCTGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCAGATAAGCAGACAGCAAAGCCCTaGAACACAGCACTGACAGTG +
Preference number: 4 (lower is better)
Translates to: EGSWVWAGRVQGFCPPDKQTAKP*NTALTV
Trigger: CACTGTCAGTGCTGTGTTCCAGGGCTTTGCTGTCTG...CTTATCTGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCAGCTTCCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp GAAGGAAGCTGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCAGATAAGGGCACCTTAAACACCTaGAGCTCCTCCAAAACCACC +
Preference number: 4 (lower is better)
Translates to: EGSWVWAGRVQGFCPPDKGTLNT*SSSKTT
Trigger: GGTGGTTTTGGAGGAGCTCCAGGTGTTTAAGGTGCC...CTTATCTGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCAGCTTCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp ATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAAATAAAGAAGCTGCTTTGTTTTaGCTCTGGCCCTGGCCCAGA +
Preference number: 4 (lower is better)
Translates to: MVQVQISAPWGCQGRGNKEAALF*LWPWPR
Trigger: TCTGGGCCAGGGCCAGAGCCAAAACAAAGCAGCTTC...TTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp CACCCTGGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTTGAAGAAACGGACCACGGTCTaGGAGAAGCCATGTTCCAGA +
Preference number: 4 (lower is better)
Translates to: HPGGARVEEINPKSSGLKKRTTV*EKPCSR
Trigger: TCTGGAACATGGCTTCTCCCAGACCGTGGTCCGTTT...CTTCAAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp AGATTTCCTCTAAGAGGTAATCAATCAGGAGTTCTGGACTCCTCTTTCCTAGCTCTGCGTCATGGCGGCTaGGCCTTCGGAACAGCAGCC +
Preference number: 4 (lower is better)
Translates to: RFPLRGNQSGVLDSSFLALRHGG*AFGTAA
Trigger: GGCTGCTGTTCCGAAGGCTCAGCCGCCATGACGCAG...AGCTAGGAAAGAGGAGTCCAGAACTCCTGATTGATTACCTCTTAGAGGAAATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp TCTGTGGGGCAAGTGTTTCTTATCAGGTTCTACCTTAGGAATCTACTTTCCCCTGACCTCCCGGGGGTCTaGCCATGCCTGATCCAGTCT +
Preference number: 4 (lower is better)
Translates to: SVGQVFLIRFYLRNLLSPDLPGV*PCLIQS
Trigger: AGACTGGATCAGGCATGGCCAGACCCCCGGGAGGTC...AGGGGAAAGTAGATTCCTAAGGTAGAACCTGATAAGAAACACTTGCCCCACAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp ACCCCCAGAACAGCAGGATTTACCATACCAGCTTTCTGTTCTCCCATAGAGAGAGGTTGGCGAAGCCCGTaGGCTGAAGGATGTCCTTAT +
Preference number: 4 (lower is better)
Translates to: TPRTAGFTIPAFCSPIERGWRSP*AEGCPY
Trigger: ATAAGGACATCCTTCAGCTCACGGGCTTCGCCAACC...TCTCTCTATGGGAGAACAGAAAGCTGGTATGGTAAATCCTGCTGTTCTGGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp TCTGTGGGGCAAGTGTTTCTTATCAGGTTCTACCTTAGGAATCTACTTTCCCCTGGTAGTCCTTGGTGCTaGCAAAGGGTCGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: SVGQVFLIRFYLRNLLSPGSPWC*QRVGLA
Trigger: AGCCAGGCCGACCCTTTGGCAGCACCAAGGACTACC...AGGGGAAAGTAGATTCCTAAGGTAGAACCTGATAAGAAACACTTGCCCCACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp ACCCCCAGAACAGCAGGATTTACCATACCAGCTTTCTGTTCTCCCATAGAGAGACCGGTCAGAGTTATCTaGGATCCGAGCAGCCATCAC +
Preference number: 4 (lower is better)
Translates to: TPRTAGFTIPAFCSPIERPVRVI*DPSSHH
Trigger: GTGATGGCTGCTCGGATCCCAGATAACTCTGACCGG...TCTCTCTATGGGAGAACAGAAAGCTGGTATGGTAAATCCTGCTGTTCTGGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp TGGGTTTGGGCAGGTAGAGTTCAGGGCTTCTGTCCTCCAGATAAGCAAATGGTGTCATCTGTCTTCACCTaGTCAGTCCCCTTATCCCCT +
Preference number: 4 (lower is better)
Translates to: WVWAGRVQGFCPPDKQMVSSVFT*SVPLSP
Trigger: AGGGGATAAGGGGACTGACCAGGTGAAGACAGATGA...CACCATTTGCTTATCTGGAGGACAGAAGCCCTGAACTCTACCTGCCCAAACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CAA 72 bp TTCCCTATTCAAAGGAGGGAACTCAGACATGCCCTCTaGTCTGTCCCGTGCGTCACTAACTTCTTCACCCTC +
Preference number: 4 (lower is better)
Translates to: FPIQRRELRHAL*SVPCVTNFFTL
Trigger: GAGGGTGAAGAAGTTAGTGACGCACGGGACAGACAAGAGGGCATGTCTGAGTTCCCTCCTTTGAATAGGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp AAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGAAGGGTCTTTTCCCTTaGGGACACATTCCACCTTCT +
Preference number: 4 (lower is better)
Translates to: KFRSQHPGGARVEEINPKKGLFP*GHIPPS
Trigger: AGAAGGTGGAATGTGTCCGCAAGGGAAAAGACCCTT...CTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp ACCCCCAGAACAGCAGGATTTACCATACCAGCTTTCTGTTCTCCCATAGAGAGAACTCAGCACAGGCACTaGCGTAAGTCTCACACTGGT +
Preference number: 4 (lower is better)
Translates to: TPRTAGFTIPAFCSPIERTQHRH*RKSHTG
Trigger: ACCAGTGTGAGACTTACGGCAGTGCCTGTGCTGAGT...TCTCTCTATGGGAGAACAGAAAGCTGGTATGGTAAATCCTGCTGTTCTGGGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp TCTAGATTCCAAAGCATGGAGACAGATAAACAGCACAACCCCACCTCCTCAGCGAGGAAGGTGCTGTTGTaGTCTGTGCCAAAGACTCTG +
Preference number: 4 (lower is better)
Translates to: SRFQSMETDKQHNPTSSARKVLL*SVPKTL
Trigger: CAGAGTCTTTGGCACAGAGCACAACAGCACCTTCCT...CGCTGAGGAGGTGGGGTTGTGCTGTTTATCTGTCTCCATGCTTTGGAATCTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp TCTGTGGGGCAAGTGTTTCTTATCAGGTTCTACCTTAGGAATCTACTTTCCCCTCATGAGCCCCGAAGCTaGTTTGTTTTGGCTCTGGCC +
Preference number: 4 (lower is better)
Translates to: SVGQVFLIRFYLRNLLSPHEPRS*FVLALA
Trigger: GGCCAGAGCCAAAACAAAGCAGCTTCGGGGCTCATG...AGGGGAAAGTAGATTCCTAAGGTAGAACCTGATAAGAAACACTTGCCCCACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR TCA 90 bp TCTGTGGGGCAAGTGTTTCTTATCAGGTTCTACCTTAGGAATCTACTTTCCCCTGCGAAGCCCGTGAGCTaGAGGATGTCCTTATACCAA +
Preference number: 4 (lower is better)
Translates to: SVGQVFLIRFYLRNLLSPAKPVS*RMSLYQ
Trigger: TTGGTATAAGGACATCCTTCAGCTCACGGGCTTCGC...AGGGGAAAGTAGATTCCTAAGGTAGAACCTGATAAGAAACACTTGCCCCACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR GCA 90 bp GCTCTGCTTTTTCTCATCAGAACTCAAGGCAACATGACAATAAAAATATCAACAGACGGAACCTGCGCTTaGCAGAGCTGGGGCGGTAGC +
Preference number: 4 (lower is better)
Translates to: ALLFLIRTQGNMTIKISTDGTCA*QSWGGS
Trigger: GCTACCGCCCCAGCTCTGGCAAGCGCAGGTTCCGTC...TGTTGATATTTTTATTGTCATGTTGCCTTGAGTTCTGATGAGAAAAAGCAGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp AGATTTCCTCTAAGAGGTAATCAATCAGGAGTTCTGGACTCCTCTTTCCTAGCTTTCCACCTTCTGTCCTaGCTGTGGCAGCCACAAGAC +
Preference number: 4 (lower is better)
Translates to: RFPLRGNQSGVLDSSFLAFHLLS*LWQPQD
Trigger: GTCTTGTGGCTGCCACAGCCAGGACAGAAGGTGGAA...AGCTAGGAAAGAGGAGTCCAGAACTCCTGATTGATTACCTCTTAGAGGAAATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CAA 72 bp AGTATGCTTGGAAGACGGAGAAGCCACAAGGCCCATTaGAAAACAGACACAGTTCACACATGTGGGCGTTTT +
Preference number: 4 (lower is better)
Translates to: SMLGRRRSHKAH*KTDTVHTCGRF
Trigger: AAAACGCCCACATGTGTGAACTGTGTCTGTTTTCAAATGGGCCTTGTGGCTTCTCCGTCTTCCAAGCATACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp GCTCTGCTTTTTCTCATCAGAACTCAAGGCAACATGACAATAAAAATATCAACACGAGGCCTCACAGGCTaGAACATGAGTGGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: ALLFLIRTQGNMTIKISTRGLTG*NMSGWS
Trigger: AGACCACCCACTCATGTTCCAGCCTGTGAGGCCTCG...TGTTGATATTTTTATTGTCATGTTGCCTTGAGTTCTGATGAGAAAAAGCAGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CCA 90 bp GCTCTGCTTTTTCTCATCAGAACTCAAGGCAACATGACAATAAAAATATCAACAAGGCTGGAACATGAGTaGGTGGTCTCGGACAAACTG +
Preference number: 4 (lower is better)
Translates to: ALLFLIRTQGNMTIKISTRLEHE*VVSDKL
Trigger: CAGTTTGTCCGAGACCACCCACTCATGTTCCAGCCT...TGTTGATATTTTTATTGTCATGTTGCCTTGAGTTCTGATGAGAAAAAGCAGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
3UTR CAA 72 bp GCCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTaGAAGTTCAGTACAGCAAAAGCTCTTTCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: ARVEEINPKSSG*KFSTAKALSCF
Trigger: AAAACAAGAAAGAGCTTTTGCTGTACTGAACTTCAAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 90 bp CAGCAGGGTTGCCATGGCGTATGTCCTGCCGACGGAACCTGCGCTTaGCAGAGCTGGGGCGGTAGCGGGCACAGGCAGTGCCATCCCAAG +
Preference number: 5 (lower is better)
Translates to: QQGCHGVCPADGTCA*QSWGGSGHRQCHPK
Trigger: CTTGGGATGGCACTGCCTGTGCCCGCTACCGCCCCAGCTCTGGCAAGCGCAGGTTCCGTCGGCAGGACATACGCCATGGCAACCCTGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 90 bp ACTGCACAGCAGGGTTGCCATGGCGTATGTCCTGCCGACGGAACCTaGGCTTGCCAGAGCTGGGGCGGTAGCGGGCACAGGCAGTGCCAT +
Preference number: 5 (lower is better)
Translates to: TAQQGCHGVCPADGT*ACQSWGGSGHRQCH
Trigger: ATGGCACTGCCTGTGCCCGCTACCGCCCCAGCTCTGGCAAGCGCAGGTTCCGTCGGCAGGACATACGCCATGGCAACCCTGCTGTGCAGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 90 bp CTCGTCTGGGTAGTCCTTGGTGCTGCCAAAGGGTCGGCCTGGCTGTaGGGTCATCTTGCTAGGACACACACCGGGGCGAGGGAAGGGCAC +
Preference number: 5 (lower is better)
Translates to: LVWVVLGAAKGSAWL*GHLARTHTGAREGH
Trigger: GTGCCCTTCCCTCGCCCCGGTGTGTGTCCTAGCAAGATGACCGCACAGCCAGGCCGACCCTTTGGCAGCACCAAGGACTACCCAGACGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 90 bp ATCTTCTTGCCCAGTTCCAGCCCTGCCCAGCTCTTGCCCTTCGCTTaGTTTCCCTTTCCGCGGAAGGAGCCTGAGCGCTCCCCGACACCC +
Preference number: 5 (lower is better)
Translates to: IFLPSSSPAQLLPFA*FPFPRKEPERSPTP
Trigger: GGGTGTCGGGGAGCGCTCAGGCTCCTTCCGCGGAAAGGGAAAGCAAGCGAAGGGCAAGAGCTGGGCAGGGCTGGAACTGGGCAAGAAGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 90 bp CTCCCCACCTACAAAGGTGCTGGCGAAGGGTCGGCTGGGCTCATGTaGGCAACGCCCCCTTCCATTCTCGACGCTGCTAGCATCCAAGCG +
Preference number: 5 (lower is better)
Translates to: LPTYKGAGEGSAGLM*ATPPSILDAASIQA
Trigger: CGCTTGGATGCTAGCAGCGTCGAGAATGGAAGGGGGCGTTGCCCACATGAGCCCAGCCGACCCTTCGCCAGCACCTTTGTAGGTGGGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp CAGTTCCAGCCCGGGACTGAGAACTCGGAGAAAGGCAGGGGTAGGCTGAGGTGCAGCCCTGCCCAGCTCTaGCCCTTCGCTTGCTTTCCC +
Preference number: 5 (lower is better)
Translates to: QFQPGTENSEKGRGRLRCSPAQL*PFACFP
Trigger: GGGAAAGCAAGCGAAGGGCAAGAGCTGGGCAGGGCT...GCACCTCAGCCTACCCCTGCCTTTCTCCGAGTTCTCAGTCCCGGGCTGGAACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 90 bp CTCGATCCACCACAATCTGGCGCAGTCGCTGAGCCAAGTGAGTTTTaGCCAGGACAGGGCGGCCACGCCGAGGCCTCACAGGCTGGAACA +
Preference number: 5 (lower is better)
Translates to: LDPPQSGAVAEPSEF*PGQGGHAEASQAGT
Trigger: TGTTCCAGCCTGTGAGGCCTCGGCGTGGCCGCCCTGTCCTGGTCAAAACTCACTTGGCTCAGCGACTGCGCCAGATTGTGGTGGATCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 90 bp CTGTCCTGGCTGTGGCAGCCACAAGACCTCCCGGGGGTCTGGCCATaGCTGATCCAGTCTCAGAGAGTAAAGGGCATCTCGGCTTCCCAG +
Preference number: 5 (lower is better)
Translates to: LSWLWQPQDLPGVWP*LIQSQRVKGISASQ
Trigger: CTGGGAAGCCGAGATGCCCTTTACTCTCTGAGACTGGATCAGGCATGGCCAGACCCCCGGGAGGTCTTGTGGCTGCCACAGCCAGGACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 90 bp AGCCCCGAAGCTGCTTTGTTTTGGCTCTGGCCCTGGCCCAGACACTaGACAGCAGGGTTGCCATGGCGTATGTCCTGCCGACGGAACCTG +
Preference number: 5 (lower is better)
Translates to: SPEAALFWLWPWPRH*TAGLPWRMSCRRNL
Trigger: CAGGTTCCGTCGGCAGGACATACGCCATGGCAACCCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAAACAAAGCAGCTTCGGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 90 bp CAACACCTCGTCTGGGTAGTCCTTGGTGCTGCCAAAGGGTCGGCCTaGCTGTGCGGTCATCTTGCTAGGACACACACCGGGGCGAGGGAA +
Preference number: 5 (lower is better)
Translates to: QHLVWVVLGAAKGSA*LCGHLARTHTGARE
Trigger: TTCCCTCGCCCCGGTGTGTGTCCTAGCAAGATGACCGCACAGCCAGGCCGACCCTTTGGCAGCACCAAGGACTACCCAGACGAGGTGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 90 bp CAGGACAGGGCGGCCACGCCGAGGCCTCACAGGCTGGAACATGAGTaGGTGGTCTCGGACAAACTGCAACACCTCGTCTGGGTAGTCCTT +
Preference number: 5 (lower is better)
Translates to: QDRAATPRPHRLEHE*VVSDKLQHLVWVVL
Trigger: AAGGACTACCCAGACGAGGTGTTGCAGTTTGTCCGAGACCACCCACTCATGTTCCAGCCTGTGAGGCCTCGGCGTGGCCGCCCTGTCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 90 bp CCAGCTCTTGCCCTTCGCTTGCTTTCCCTTTCCGCGGAAGGAGCCTaGGCGCTCCCCGACACCCCTGCACCATACACGTTCACAGTACTC +
Preference number: 5 (lower is better)
Translates to: PALALRLLSLSAEGA*ALPDTPAPYTFTVL
Trigger: GAGTACTGTGAACGTGTATGGTGCAGGGGTGTCGGGGAGCGCTCAGGCTCCTTCCGCGGAAAGGGAAAGCAAGCGAAGGGCAAGAGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 90 bp TGGCTTCTACCTCCCGGGGTGTCCGATTGTGCTCAGCCAGCACCCTaGTCTTCATCTTCTTGCCCAGTTCCAGCCCTGCCCAGCTCTTGC +
Preference number: 5 (lower is better)
Translates to: WLLPPGVSDCAQPAP*SSSSCPVPALPSSC
Trigger: GCAAGAGCTGGGCAGGGCTGGAACTGGGCAAGAAGATGAAGAGCAGGGTGCTGGCTGAGCACAATCGGACACCCCGGGAGGTAGAAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 90 bp CACCTTCTGTCCTGGCTGTGGCAGCCACAAGACCTCCCGGGGGTCTaGCCATGCCTGATCCAGTCTCAGAGAGTAAAGGGCATCTCGGCT +
Preference number: 5 (lower is better)
Translates to: HLLSWLWQPQDLPGV*PCLIQSQRVKGISA
Trigger: AGCCGAGATGCCCTTTACTCTCTGAGACTGGATCAGGCATGGCCAGACCCCCGGGAGGTCTTGTGGCTGCCACAGCCAGGACAGAAGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp ATAGCAGGCCCCTTGGGACTACAAGTGGTCTGGAGGTGCCAGTTCCAGCCCGGGAAGACCCGCACGAAGTaGGCACACTCCGTCAAAGGG +
Preference number: 5 (lower is better)
Translates to: IAGPLGLQVVWRCQFQPGKTRTK*AHSVKG
Trigger: CCCTTTGACGGAGTGTGCCAACTTCGTGCGGGTCTT...CCCGGGCTGGAACTGGCACCTCCAGACCACTTGTAGTCCCAAGGGGCCTGCTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp GAAACTGCTGATGGCCAAGCTTCTCCCCAGCCCTTGTCACTCAGCCCCACCCCCGAAGGTGCAGATGGGTaGGAAGGCTCCTGTGCCACA +
Preference number: 5 (lower is better)
Translates to: ETADGQASPQPLSLSPTPEGADG*EGSCAT
Trigger: TGTGGCACAGGAGCCTTCCAACCCATCTGCACCTTC...GGGGGTGGGGCTGAGTGACAAGGGCTGGGGAGAAGCTTGGCCATCAGCAGTTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 90 bp CCAGCATCATTCACACAGACGCGGCCCACTCGGCTGATGGTGACATaGCCTGGGCCACCATCTGGTGACGGGACAGTCTCGGAGAAGAAG +
Preference number: 5 (lower is better)
Translates to: PASFTQTRPTRLMVT*PGPPSGDGTVSEKK
Trigger: CTTCTTCTCCGAGACTGTCCCGTCACCAGATGGTGGCCCAGGTCATGTCACCATCAGCCGAGTGGGCCGCGTCTGTGTGAATGATGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 90 bp CTCAGCCAGCACCCTGCTCTTCATCTTCTTGCCCAGTTCCAGCCCTaGCCAGCTCTTGCCCTTCGCTTGCTTTCCCTTTCCGCGGAAGGA +
Preference number: 5 (lower is better)
Translates to: LSQHPALHLLAQFQP*PALALRLLSLSAEG
Trigger: TCCTTCCGCGGAAAGGGAAAGCAAGCGAAGGGCAAGAGCTGGGCAGGGCTGGAACTGGGCAAGAAGATGAAGAGCAGGGTGCTGGCTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp CGGCCTGAGCATGCCCGCCTCACCCTCGGAAAGGTAGCCCATCCTTCGAGGCACGCCCACATACAGCGTTaGCCTTTTGACAGAGATCTC +
Preference number: 5 (lower is better)
Translates to: RPEHARLTLGKVAHPSRHAHIQR*PFDRDL
Trigger: GAGATCTCTGTCAAAAGGCAAACGCTGTATGTGGGC...GTGCCTCGAAGGATGGGCTACCTTTCCGAGGGTGAGGCGGGCATGCTCAGGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 90 bp TCACAGTACTCATCCACACGGGGCAGGTTGGCGAAGCCCGTGAGCTaGAGGATGTCCTTATACCAAGTCTTGGGGGAGGCAGAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: SQYSSTRGRLAKPVS*RMSLYQVLGEAEAR
Trigger: CCTGGCCTCTGCCTCCCCCAAGACTTGGTATAAGGACATCCTTCAGCTCACGGGCTTCGCCAACCTGCCCCGTGTGGATGAGTACTGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 90 bp TTCTCGACGCTGCTAGCATCCAAGCGGAGCACATGCTCCCCTCGATaGCCCACTGTGATGAAGGTGCAGATGGGTTGGAAGGCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: FSTLLASKRSTCSPR*PTVMKVQMGWKAPV
Trigger: CACAGGAGCCTTCCAACCCATCTGCACCTTCATCACAGTGGGGCATCGAGGGGAGCATGTGCTCCGCTTGGATGCTAGCAGCGTCGAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 90 bp GCTGTTGTGCTCTGTGCCAAAGACTCTGGTCATGAGCCCCGAAGCTaGTTTGTTTTGGCTCTGGCCCTGGCCCAGACACTGCACAGCAGG +
Preference number: 5 (lower is better)
Translates to: AVVLCAKDSGHEPRS*FVLALALAQTLHSR
Trigger: CCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAAACAAAGCAGCTTCGGGGCTCATGACCAGAGTCTTTGGCACAGAGCACAACAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 90 bp CCAAAGACTCTGGTCATGAGCCCCGAAGCTGCTTTGTTTTGGCTCTaGCCCTGGCCCAGACACTGCACAGCAGGGTTGCCATGGCGTATG +
Preference number: 5 (lower is better)
Translates to: PKTLVMSPEAALFWL*PWPRHCTAGLPWRM
Trigger: CATACGCCATGGCAACCCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAAACAAAGCAGCTTCGGGGCTCATGACCAGAGTCTTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 90 bp GTCCCCTTATCCCCTGGCCTTTGTAAGAACCAGCGCACTGCAGCCTaGGGAGACTTGGGCAGGCACTCAAGGAAGGTGCTGTTGTGCTCT +
Preference number: 5 (lower is better)
Translates to: VPLSPGLCKNQRTAA*GDLGRHSRKVLLCS
Trigger: AGAGCACAACAGCACCTTCCTTGAGTGCCTGCCCAAGTCTCCTCAGGCTGCAGTGCGCTGGTTCTTACAAAGGCCAGGGGATAAGGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 90 bp CATGTTCCAGAGTGGTGCAAGTGTAGTTTCCTGCGTCATGGCGGCTaGGCCTTCGGAACAGCAGCCCTTGGGCCGTCTGCACAACTCTCT +
Preference number: 5 (lower is better)
Translates to: HVPEWCKCSFLRHGG*AFGTAALGPSAQLS
Trigger: AGAGAGTTGTGCAGACGGCCCAAGGGCTGCTGTTCCGAAGGCTCAGCCGCCATGACGCAGGAAACTACACTTGCACCACTCTGGAACATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 90 bp CACGTTCACAGTACTCATCCACACGGGGCAGGTTGGCGAAGCCCGTaGGCTGAAGGATGTCCTTATACCAAGTCTTGGGGGAGGCAGAGG +
Preference number: 5 (lower is better)
Translates to: HVHSTHPHGAGWRSP*AEGCPYTKSWGRQR
Trigger: CCTCTGCCTCCCCCAAGACTTGGTATAAGGACATCCTTCAGCTCACGGGCTTCGCCAACCTGCCCCGTGTGGATGAGTACTGTGAACGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 90 bp GCCGTAAGTCTCACACTGGTGCAGCTGCAGCCGGGCCACACCCAGTaGAGAGCCCACATACAGCGTTTGCCTTTTGACAGAGATCTCCAT +
Preference number: 5 (lower is better)
Translates to: AVSLTLVQLQPGHTQ*RAHIQRLPFDRDLH
Trigger: ATGGAGATCTCTGTCAAAAGGCAAACGCTGTATGTGGGCTCTCCACTGGGTGTGGCCCGGCTGCAGCTGCACCAGTGTGAGACTTACGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 90 bp CTCGGCTTCCCAGAAAGAGGCGATCTCGATACTCATCCAGGTACATaGCTTGGAGGTCTAGGGAACCCCGTGGGCCCAGAAAGATGGCAG +
Preference number: 5 (lower is better)
Translates to: LGFPERGDLDTHPGT*LGGLGNPVGPERWQ
Trigger: CTGCCATCTTTCTGGGCCCACGGGGTTCCCTAGACCTCCAAGTCATGTACCTGGATGAGTATCGAGATCGCCTCTTTCTGGGAAGCCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 90 bp ACTCAAGGAAGGTGCTGTTGTGCTCTGTGCCAAAGACTCTGGTCATaGGCCCCGAAGCTGCTTTGTTTTGGCTCTGGCCCTGGCCCAGAC +
Preference number: 5 (lower is better)
Translates to: TQGRCCCALCQRLWS*APKLLCFGSGPGPD
Trigger: GTCTGGGCCAGGGCCAGAGCCAAAACAAAGCAGCTTCGGGGCTCATGACCAGAGTCTTTGGCACAGAGCACAACAGCACCTTCCTTGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 90 bp CTTCCCAGAAAGAGGCGATCTCGATACTCATCCAGGTACATGACTTaGAGGTCTAGGGAACCCCGTGGGCCCAGAAAGATGGCAGAGCGG +
Preference number: 5 (lower is better)
Translates to: LPRKRRSRYSSRYMT*RSREPRGPRKMAER
Trigger: CCGCTCTGCCATCTTTCTGGGCCCACGGGGTTCCCTAGACCTCCAAGTCATGTACCTGGATGAGTATCGAGATCGCCTCTTTCTGGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 90 bp CCAGCAGATGGGTCCGGTTATGGGGTTGTAAGACCCGCACGAAGTTaGCACACTCCGTCAAAGGGTCTTTTCCCTTGCGGACACATTCCA +
Preference number: 5 (lower is better)
Translates to: PADGSGYGVVRPARS*HTPSKGLFPCGHIP
Trigger: TGGAATGTGTCCGCAAGGGAAAAGACCCTTTGACGGAGTGTGCCAACTTCGTGCGGGTCTTACAACCCCATAACCGGACCCATCTGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 90 bp AGCTCCTCCAAAACCACCTCTTCAGGTTCAGTCAAGCCACCACCCTaGAGGGCAATGACTTTGAGCACAGAACCCGAATCAGTCCCTAGG +
Preference number: 5 (lower is better)
Translates to: SSSKTTSSGSVKPPP*RAMTLSTEPESVPR
Trigger: CCTAGGGACTGATTCGGGTTCTGTGCTCAAAGTCATTGCCCTCCAGGGTGGTGGCTTGACTGAACCTGAAGAGGTGGTTTTGGAGGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp ATGGTGCAAGTTCAGATCTCAGCACCCTGGGGGTGCCAGGGTAGAGGAAATAAACTGCTCTTCATCTTCTaGCCCAGTTCCAGCCCTGCC +
Preference number: 5 (lower is better)
Translates to: MVQVQISAPWGCQGRGNKLLFIF*PSSSPA
Trigger: GGCAGGGCTGGAACTGGGCAAGAAGATGAAGAGCAG...TTTATTTCCTCTACCCTGGCACCCCCAGGGTGCTGAGATCTGAACTTGCACCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp TGGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTTGAAGTTCAGTGGGCAAAGGGCCCATaGAAGACCTCCCAGATGTCT +
Preference number: 5 (lower is better)
Translates to: WGCQGRGNKPKVFGFEVQWAKGP*KTSQMS
Trigger: AGACATCTGGGAGGTCTTCAATGGGCCCTTTGCCCA...CTGAACTTCAAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp ACCCCCAGAACAGCAGGATTTACCATACCAGCTTTCTGTTCTCCCATAGAGAGAAAGATGGCAGAGCGGTaGGTAGACAGGAGATCTCTG +
Preference number: 5 (lower is better)
Translates to: TPRTAGFTIPAFCSPIERKMAER*VDRRSL
Trigger: CAGAGATCTCCTGTCTACCAACCGCTCTGCCATCTT...TCTCTCTATGGGAGAACAGAAAGCTGGTATGGTAAATCCTGCTGTTCTGGGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp TCTGTGGGGCAAGTGTTTCTTATCAGGTTCTACCTTAGGAATCTACTTTCCCCTCACACCAGCCGGGCCTaGAGGAAAGTGCTCCATTTG +
Preference number: 5 (lower is better)
Translates to: SVGQVFLIRFYLRNLLSPHTSRA*RKVLHL
Trigger: CAAATGGAGCACTTTCCTCAAGGCCCGGCTGGTGTG...AGGGGAAAGTAGATTCCTAAGGTAGAACCTGATAAGAAACACTTGCCCCACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp CACCCTGGGGGTGCCAGGGTAGAGGAAATAAACCCAAAGTCTTCGGGTTTGAAGTACAGCGTTTGCCTTTaGACAGAGATCTCCATCTCA +
Preference number: 5 (lower is better)
Translates to: HPGGARVEEINPKSSGLKYSVCL*TEISIS
Trigger: TGAGATGGAGATCTCTGTCAAAAGGCAAACGCTGTA...CTTCAAACCCGAAGACTTTGGGTTTATTTCCTCTACCCTGGCACCCCCAGGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp AGATTTCCTCTAAGAGGTAATCAATCAGGAGTTCTGGACTCCTCTTTCCTAGCTTCGGAACAGCAGCCCTaGGGCCGTCTGCACAACTCT +
Preference number: 5 (lower is better)
Translates to: RFPLRGNQSGVLDSSFLASEQQP*GRLHNS
Trigger: AGAGTTGTGCAGACGGCCCAAGGGCTGCTGTTCCGA...AGCTAGGAAAGAGGAGTCCAGAACTCCTGATTGATTACCTCTTAGAGGAAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp TCTGTGGGGCAAGTGTTTCTTATCAGGTTCTACCTTAGGAATCTACTTTCCCCTAGGAAAGTGCTCCATTaGTTCACCAGCACCCGCTGG +
Preference number: 5 (lower is better)
Translates to: SVGQVFLIRFYLRNLLSPRKVLH*FTSTRW
Trigger: CCAGCGGGTGCTGGTGAACAAATGGAGCACTTTCCT...AGGGGAAAGTAGATTCCTAAGGTAGAACCTGATAAGAAACACTTGCCCCACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp GCTCTGCTTTTTCTCATCAGAACTCAAGGCAACATGACAATAAAAATATCAACAGGCTGTGCGGTCATCTaGCTAGGACACACACCGGGG +
Preference number: 5 (lower is better)
Translates to: ALLFLIRTQGNMTIKISTGCAVI*LGHTPG
Trigger: CCCCGGTGTGTGTCCTAGCAAGATGACCGCACAGCC...TGTTGATATTTTTATTGTCATGTTGCCTTGAGTTCTGATGAGAAAAAGCAGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS-3UTR CAA 90 bp GCTCTGCTTTTTCTCATCAGAACTCAAGGCAACATGACAATAAAAATATCAACATCAAGGAAGGTGCTGTaGTGCTCTGTGCCAAAGACT +
Preference number: 5 (lower is better)
Translates to: ALLFLIRTQGNMTIKISTSRKVL*CSVPKT
Trigger: AGTCTTTGGCACAGAGCACAACAGCACCTTCCTTGA...TGTTGATATTTTTATTGTCATGTTGCCTTGAGTTCTGATGAGAAAAAGCAGAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 72 bp TGCCATGGCGTATGTCCTGCCGACGGAACCTGCGCTTaGCAGAGCTGGGGCGGTAGCGGGCACAGGCAGTGC +
Preference number: 6 (lower is better)
Translates to: CHGVCPADGTCA*QSWGGSGHRQC
Trigger: GCACTGCCTGTGCCCGCTACCGCCCCAGCTCTGGCAAGCGCAGGTTCCGTCGGCAGGACATACGCCATGGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 72 bp CAGGGTTGCCATGGCGTATGTCCTGCCGACGGAACCTaGGCTTGCCAGAGCTGGGGCGGTAGCGGGCACAGG +
Preference number: 6 (lower is better)
Translates to: QGCHGVCPADGT*ACQSWGGSGHR
Trigger: CCTGTGCCCGCTACCGCCCCAGCTCTGGCAAGCGCAGGTTCCGTCGGCAGGACATACGCCATGGCAACCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp GTATGTCCTGCCGACGGAACCTGCGCTTGCCAGAGCTaGGGCGGTAGCGGGCACAGGCAGTGCCATCCCAAG +
Preference number: 6 (lower is better)
Translates to: VCPADGTCACQS*GGSGHRQCHPK
Trigger: CTTGGGATGGCACTGCCTGTGCCCGCTACCGCCCCAGCTCTGGCAAGCGCAGGTTCCGTCGGCAGGACATAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CAA 72 bp GTGCTGCCAAAGGGTCGGCCTGGCTGTGCGGTCATCTaGCTAGGACACACACCGGGGCGAGGGAAGGGCACC +
Preference number: 6 (lower is better)
Translates to: VLPKGRPGCAVI*LGHTPGRGKGT
Trigger: GGTGCCCTTCCCTCGCCCCGGTGTGTGTCCTAGCAAGATGACCGCACAGCCAGGCCGACCCTTTGGCAGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 72 bp AGACACTGCACAGCAGGGTTGCCATGGCGTATGTCCTaGCGACGGAACCTGCGCTTGCCAGAGCTGGGGCGG +
Preference number: 6 (lower is better)
Translates to: RHCTAGLPWRMS*RRNLRLPELGR
Trigger: CCGCCCCAGCTCTGGCAAGCGCAGGTTCCGTCGGCAGGACATACGCCATGGCAACCCTGCTGTGCAGTGTCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 72 bp CCCAGTTCCAGCCCTGCCCAGCTCTTGCCCTTCGCTTaGTTTCCCTTTCCGCGGAAGGAGCCTGAGCGCTCC +
Preference number: 6 (lower is better)
Translates to: PSSSPAQLLPFA*FPFPRKEPERS
Trigger: GGAGCGCTCAGGCTCCTTCCGCGGAAAGGGAAAGCAAGCGAAGGGCAAGAGCTGGGCAGGGCTGGAACTGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp CAGGGCGGCCACGCCGAGGCCTCACAGGCTGGAACATaGGTGGGTGGTCTCGGACAAACTGCAACACCTCGT +
Preference number: 6 (lower is better)
Translates to: QGGHAEASQAGT*VGGLGQTATPR
Trigger: ACGAGGTGTTGCAGTTTGTCCGAGACCACCCACTCATGTTCCAGCCTGTGAGGCCTCGGCGTGGCCGCCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp CCACAATCTGGCGCAGTCGCTGAGCCAAGTGAGTTTTaGCCAGGACAGGGCGGCCACGCCGAGGCCTCACAG +
Preference number: 6 (lower is better)
Translates to: PQSGAVAEPSEF*PGQGGHAEASQ
Trigger: CTGTGAGGCCTCGGCGTGGCCGCCCTGTCCTGGTCAAAACTCACTTGGCTCAGCGACTGCGCCAGATTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp GCCCTTCGCTTGCTTTCCCTTTCCGCGGAAGGAGCCTaGGCGCTCCCCGACACCCCTGCACCATACACGTTC +
Preference number: 6 (lower is better)
Translates to: ALRLLSLSAEGA*ALPDTPAPYTF
Trigger: GAACGTGTATGGTGCAGGGGTGTCGGGGAGCGCTCAGGCTCCTTCCGCGGAAAGGGAAAGCAAGCGAAGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp TCCCTTGCGGACACATTCCACCTTCTGTCCTGGCTGTaGCAGCCACAAGACCTCCCGGGGGTCTGGCCATGC +
Preference number: 6 (lower is better)
Translates to: SLADTFHLLSWL*QPQDLPGVWPC
Trigger: GCATGGCCAGACCCCCGGGAGGTCTTGTGGCTGCCACAGCCAGGACAGAAGGTGGAATGTGTCCGCAAGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp GCTCCCCACCTACAAAGGTGCTGGCGAAGGGTCGGCTaGGCTCATGTGGGCAACGCCCCCTTCCATTCTCGA +
Preference number: 6 (lower is better)
Translates to: APHLQRCWRRVG*AHVGNAPFHSR
Trigger: TCGAGAATGGAAGGGGGCGTTGCCCACATGAGCCCAGCCGACCCTTCGCCAGCACCTTTGTAGGTGGGGAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp GCGGCCACGCCGAGGCCTCACAGGCTGGAACATGAGTaGGTGGTCTCGGACAAACTGCAACACCTCGTCTGG +
Preference number: 6 (lower is better)
Translates to: AATPRPHRLEHE*VVSDKLQHLVW
Trigger: CCAGACGAGGTGTTGCAGTTTGTCCGAGACCACCCACTCATGTTCCAGCCTGTGAGGCCTCGGCGTGGCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp ACCAGGACAGGGCGGCCACGCCGAGGCCTCACAGGCTaGAACATGAGTGGGTGGTCTCGGACAAACTGCAAC +
Preference number: 6 (lower is better)
Translates to: TRTGRPRRGLTG*NMSGWSRTNCN
Trigger: GTTGCAGTTTGTCCGAGACCACCCACTCATGTTCCAGCCTGTGAGGCCTCGGCGTGGCCGCCCTGTCCTGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp TACAAAGGTGCTGGCGAAGGGTCGGCTGGGCTCATGTaGGCAACGCCCCCTTCCATTCTCGACGCTGCTAGC +
Preference number: 6 (lower is better)
Translates to: YKGAGEGSAGLM*ATPPSILDAAS
Trigger: GCTAGCAGCGTCGAGAATGGAAGGGGGCGTTGCCCACATGAGCCCAGCCGACCCTTCGCCAGCACCTTTGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp GCAGCCATCACAAACCGGGGTTCATGTAGGAGGCTCTaGTCAGAGTCAGAACGCAGGGCTGGTCGGGGACCC +
Preference number: 6 (lower is better)
Translates to: AAITNRGSCRRL*SESERRAGRGP
Trigger: GGGTCCCCGACCAGCCCTGCGTTCTGACTCTGACCAGAGCCTCCTACATGAACCCCGGTTTGTGATGGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp GTCTGGGTAGTCCTTGGTGCTGCCAAAGGGTCGGCCTaGCTGTGCGGTCATCTTGCTAGGACACACACCGGG +
Preference number: 6 (lower is better)
Translates to: VWVVLGAAKGSA*LCGHLARTHTG
Trigger: CCCGGTGTGTGTCCTAGCAAGATGACCGCACAGCCAGGCCGACCCTTTGGCAGCACCAAGGACTACCCAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CAA 72 bp AGGCCAGGCTTCCCCAGGCTGAGGGCTCCTCTAGCCTaGACTCCCGAAGGAACAGGCTGTCCAGTTGCACAG +
Preference number: 6 (lower is better)
Translates to: RPGFPRLRAPLA*TPEGTGCPVAQ
Trigger: CTGTGCAACTGGACAGCCTGTTCCTTCGGGAGTCAAGGCTAGAGGAGCCCTCAGCCTGGGGAAGCCTGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp GAGTGGTGCAAGTGTAGTTTCCTGCGTCATGGCGGCTaGGCCTTCGGAACAGCAGCCCTTGGGCCGTCTGCA +
Preference number: 6 (lower is better)
Translates to: EWCKCSFLRHGG*AFGTAALGPSA
Trigger: TGCAGACGGCCCAAGGGCTGCTGTTCCGAAGGCTCAGCCGCCATGACGCAGGAAACTACACTTGCACCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 72 bp CTGTGGCAGCCACAAGACCTCCCGGGGGTCTGGCCATaGCTGATCCAGTCTCAGAGAGTAAAGGGCATCTCG +
Preference number: 6 (lower is better)
Translates to: LWQPQDLPGVWP*LIQSQRVKGIS
Trigger: CGAGATGCCCTTTACTCTCTGAGACTGGATCAGGCATGGCCAGACCCCCGGGAGGTCTTGTGGCTGCCACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp GTCTTTTCCCTTGCGGACACATTCCACCTTCTGTCCTaGCTGTGGCAGCCACAAGACCTCCCGGGGGTCTGG +
Preference number: 6 (lower is better)
Translates to: VFSLADTFHLLS*LWQPQDLPGVW
Trigger: CCAGACCCCCGGGAGGTCTTGTGGCTGCCACAGCCAGGACAGAAGGTGGAATGTGTCCGCAAGGGAAAAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp CTCGGACAAACTGCAACACCTCGTCTGGGTAGTCCTTaGTGCTGCCAAAGGGTCGGCCTGGCTGTGCGGTCA +
Preference number: 6 (lower is better)
Translates to: LGQTATPRLGSP*CCQRVGLAVRS
Trigger: TGACCGCACAGCCAGGCCGACCCTTTGGCAGCACCAAGGACTACCCAGACGAGGTGTTGCAGTTTGTCCGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp TCCCCTGGCCTTTGTAAGAACCAGCGCACTGCAGCCTaGGGAGACTTGGGCAGGCACTCAAGGAAGGTGCTG +
Preference number: 6 (lower is better)
Translates to: SPGLCKNQRTAA*GDLGRHSRKVL
Trigger: CAGCACCTTCCTTGAGTGCCTGCCCAAGTCTCCTCAGGCTGCAGTGCGCTGGTTCTTACAAAGGCCAGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 72 bp CCATTCTCGACGCTGCTAGCATCCAAGCGGAGCACATaGTCCCCTCGATGCCCCACTGTGATGAAGGTGCAG +
Preference number: 6 (lower is better)
Translates to: PFSTLLASKRST*SPRCPTVMKVQ
Trigger: CTGCACCTTCATCACAGTGGGGCATCGAGGGGAGCATGTGCTCCGCTTGGATGCTAGCAGCGTCGAGAATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 72 bp GGACAAACTGCAACACCTCGTCTGGGTAGTCCTTGGTaGTGCCAAAGGGTCGGCCTGGCTGTGCGGTCATCT +
Preference number: 6 (lower is better)
Translates to: GQTATPRLGSPW*CQRVGLAVRSS
Trigger: AGATGACCGCACAGCCAGGCCGACCCTTTGGCAGCACCAAGGACTACCCAGACGAGGTGTTGCAGTTTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CAA 90 bp TTGTGCTCTGTGCCAAAGACTCTGGTCATGAGCCCCGAAGCTGCTTaGTTTTGGCTCTGGCCCTGGCCCAGACACTGCACAGCAGGGTTG +
Preference number: 6 (lower is better)
Translates to: LCSVPKTLVMSPEAA*FWLWPWPRHCTAGL
Trigger: CAACCCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAAACAAAGCAGCTTCGGGGCTCATGACCAGAGTCTTTGGCACAGAGCACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp TCATCCACACGGGGCAGGTTGGCGAAGCCCGTGAGCTaGAGGATGTCCTTATACCAAGTCTTGGGGGAGGCA +
Preference number: 6 (lower is better)
Translates to: SSTRGRLAKPVS*RMSLYQVLGEA
Trigger: TGCCTCCCCCAAGACTTGGTATAAGGACATCCTTCAGCTCACGGGCTTCGCCAACCTGCCCCGTGTGGATGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS GCA 72 bp CTCTGTGCCAAAGACTCTGGTCATGAGCCCCGAAGCTaGTTTGTTTTGGCTCTGGCCCTGGCCCAGACACTG +
Preference number: 6 (lower is better)
Translates to: LCAKDSGHEPRS*FVLALALAQTL
Trigger: CAGTGTCTGGGCCAGGGCCAGAGCCAAAACAAAGCAGCTTCGGGGCTCATGACCAGAGTCTTTGGCACAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CAA 72 bp GTGCCAAAGACTCTGGTCATGAGCCCCGAAGCTGCTTaGTTTTGGCTCTGGCCCTGGCCCAGACACTGCACA +
Preference number: 6 (lower is better)
Translates to: VPKTLVMSPEAA*FWLWPWPRHCT
Trigger: TGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAAACAAAGCAGCTTCGGGGCTCATGACCAGAGTCTTTGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CAA 72 bp TTCATCTTCTTGCCCAGTTCCAGCCCTGCCCAGCTCTaGCCCTTCGCTTGCTTTCCCTTTCCGCGGAAGGAG +
Preference number: 6 (lower is better)
Translates to: FIFLPSSSPAQL*PFACFPFPRKE
Trigger: CTCCTTCCGCGGAAAGGGAAAGCAAGCGAAGGGCAAGAGCTGGGCAGGGCTGGAACTGGGCAAGAAGATGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CAA 90 bp GCCAGCAGATGGGTCCGGTTATGGGGTTGTAAGACCCGCACGAAGTaGGCACACTCCGTCAAAGGGTCTTTTCCCTTGCGGACACATTCC +
Preference number: 6 (lower is better)
Translates to: ASRWVRLWGCKTRTK*AHSVKGSFPLRTHS
Trigger: GGAATGTGTCCGCAAGGGAAAAGACCCTTTGACGGAGTGTGCCAACTTCGTGCGGGTCTTACAACCCCATAACCGGACCCATCTGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp GATGCTGAGGGCCATCTCGGTGGGCAAAGGGCCCATTaGAGACCTCCCAGATGTCTACCATGTGGTACACAC +
Preference number: 6 (lower is better)
Translates to: DAEGHLGGQRAH*RPPRCLPCGTH
Trigger: GTGTGTACCACATGGTAGACATCTGGGAGGTCTTCAATGGGCCCTTTGCCCACCGAGATGGCCCTCAGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp AGTACTCATCCACACGGGGCAGGTTGGCGAAGCCCGTaGGCTGAAGGATGTCCTTATACCAAGTCTTGGGGG +
Preference number: 6 (lower is better)
Translates to: STHPHGAGWRSP*AEGCPYTKSWG
Trigger: CCCCCAAGACTTGGTATAAGGACATCCTTCAGCTCACGGGCTTCGCCAACCTGCCCCGTGTGGATGAGTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp GGGTCCGGTTATGGGGTTGTAAGACCCGCACGAAGTTaGCACACTCCGTCAAAGGGTCTTTTCCCTTGCGGA +
Preference number: 6 (lower is better)
Translates to: GSGYGVVRPARS*HTPSKGLFPCG
Trigger: TCCGCAAGGGAAAAGACCCTTTGACGGAGTGTGCCAACTTCGTGCGGGTCTTACAACCCCATAACCGGACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CAA 72 bp TGGGTCCGGTTATGGGGTTGTAAGACCCGCACGAAGTaGGCACACTCCGTCAAAGGGTCTTTTCCCTTGCGG +
Preference number: 6 (lower is better)
Translates to: WVRLWGCKTRTK*AHSVKGSFPLR
Trigger: CCGCAAGGGAAAAGACCCTTTGACGGAGTGTGCCAACTTCGTGCGGGTCTTACAACCCCATAACCGGACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp CCAGAAAGAGGCGATCTCGATACTCATCCAGGTACATaGCTTGGAGGTCTAGGGAACCCCGTGGGCCCAGAA +
Preference number: 6 (lower is better)
Translates to: PERGDLDTHPGT*LGGLGNPVGPE
Trigger: TTCTGGGCCCACGGGGTTCCCTAGACCTCCAAGTCATGTACCTGGATGAGTATCGAGATCGCCTCTTTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp AGGTGCTGTTGTGCTCTGTGCCAAAGACTCTGGTCATaGGCCCCGAAGCTGCTTTGTTTTGGCTCTGGCCCT +
Preference number: 6 (lower is better)
Translates to: RCCCALCQRLWS*APKLLCFGSGP
Trigger: AGGGCCAGAGCCAAAACAAAGCAGCTTCGGGGCTCATGACCAGAGTCTTTGGCACAGAGCACAACAGCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp GAAGTACACCTTGTCGTCGTCCCGGTCAGAGTTATCTaGGATCCGAGCAGCCATCACAAACCGGGGTTCATG +
Preference number: 6 (lower is better)
Translates to: EVHLVVVPVRVI*DPSSHHKPGFM
Trigger: CATGAACCCCGGTTTGTGATGGCTGCTCGGATCCCAGATAACTCTGACCGGGACGACGACAAGGTGTACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS TCA 72 bp GGAAAATCATGGCCTCACGTCCCAGGAAATCGGCAGTaGGACCTGTGTATAGCTCCCCACCTACAAAGGTGC +
Preference number: 6 (lower is better)
Translates to: GKSWPHVPGNRQ*DLCIAPHLQRC
Trigger: GCACCTTTGTAGGTGGGGAGCTATACACAGGTCTCACTGCCGATTTCCTGGGACGTGAGGCCATGATTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp AAGAGGCGATCTCGATACTCATCCAGGTACATGACTTaGAGGTCTAGGGAACCCCGTGGGCCCAGAAAGATG +
Preference number: 6 (lower is better)
Translates to: KRRSRYSSRYMT*RSREPRGPRKM
Trigger: CATCTTTCTGGGCCCACGGGGTTCCCTAGACCTCCAAGTCATGTACCTGGATGAGTATCGAGATCGCCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CAA 72 bp GGTTCAGTCAAGCCACCACCCTGGAGGGCAATGACTTaGAGCACAGAACCCGAATCAGTCCCTAGGAAGATG +
Preference number: 6 (lower is better)
Translates to: GSVKPPPWRAMT*STEPESVPRKM
Trigger: CATCTTCCTAGGGACTGATTCGGGTTCTGTGCTCAAAGTCATTGCCCTCCAGGGTGGTGGCTTGACTGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CAA 72 bp ACACCCAGTGGAGAGCCCACATACAGCGTTTGCCTTTaGACAGAGATCTCCATCTCAGTGATGGGCGTTGGC +
Preference number: 6 (lower is better)
Translates to: TPSGEPTYSVCL*TEISISVMGVG
Trigger: GCCAACGCCCATCACTGAGATGGAGATCTCTGTCAAAAGGCAAACGCTGTATGTGGGCTCTCCACTGGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp TCCATCTCAGTGATGGGCGTTGGCACCTTAAACACCTaGAGCTCCTCCAAAACCACCTCTTCAGGTTCAGTC +
Preference number: 6 (lower is better)
Translates to: SISVMGVGTLNT*SSSKTTSSGSV
Trigger: GACTGAACCTGAAGAGGTGGTTTTGGAGGAGCTCCAGGTGTTTAAGGTGCCAACGCCCATCACTGAGATGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4
CDS CCA 72 bp AAAACCACCTCTTCAGGTTCAGTCAAGCCACCACCCTaGAGGGCAATGACTTTGAGCACAGAACCCGAATCA +
Preference number: 6 (lower is better)
Translates to: KTTSSGSVKPPP*RAMTLSTEPES
Trigger: TGATTCGGGTTCTGTGCTCAAAGTCATTGCCCTCCAGGGTGGTGGCTTGACTGAACCTGAAGAGGTGGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090180.4