RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SEMA3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028883

Ensembl transcript IDs: ENSMUST00000030714.9, ENSMUST00000095012.11, ENSMUST00000137798.10

Found 287 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGAGGTGGCGCAGCTCAGACACTTCTGGGTGCCCGCTCAAACTCGTaGGTCCTCCTGTTTCTACCTTTCTTGCTCTCTTGCATGTGCTTC +
Preference number: 1 (lower is better)
Translates to: GGGAAQTLLGARSNS*VLLFLPFLLSCMCF
Trigger: GAAGCACATGCAAGAGAGCAAGAAAGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGCACCCAGAAGTGTCTGAGCTGCGCCACCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR GCA 90 bp TGGGTGCCCGCTCAAACTCGTGGGTCCTCCTGTTTCTACCTTTCTTaGTCTCTTGCATGTGCTTCCACTTGTTGCTGCTCCCTTGAGAGT +
Preference number: 1 (lower is better)
Translates to: WVPAQTRGSSCFYLS*SLACASTCCCSLES
Trigger: ACTCTCAAGGGAGCAGCAACAAGTGGAAGCACATGCAAGAGAGCAAGAAAGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGCACCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR CCA 90 bp TGTACTTGTTTGAGGTTTTGGGAGGTGGCGCAGCTCAGACACTTCTaGGTGCCCGCTCAAACTCGTGGGTCCTCCTGTTTCTACCTTTCT +
Preference number: 1 (lower is better)
Translates to: CTCLRFWEVAQLRHF*VPAQTRGSSCFYLS
Trigger: AGAAAGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGCACCCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACCTCAAACAAGTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR GCA 90 bp TCACAGAACTCATCCATCGTGTTCAGGTTGGGGTGGTTAATGAGCTaGATGAAGTCTCGGTACCAGACTTTCTGGCTGGGCGTCATGCTG +
Preference number: 1 (lower is better)
Translates to: SQNSSIVFRLGWLMS*MKSRYQTFWLGVML
Trigger: CAGCATGACGCCCAGCCAGAAAGTCTGGTACCGAGACTTCATGCAGCTCATTAACCACCCCAACCTGAACACGATGGATGAGTTCTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR CCA 90 bp TTTTTCCAGTTATTATCTAAGCAAGTTTGTACTTGTTTGAGGTTTTaGGAGGTGGCGCAGCTCAGACACTTCTGGGTGCCCGCTCAAACT +
Preference number: 1 (lower is better)
Translates to: FFQLLSKQVCTCLRF*EVAQLRHFWVPAQT
Trigger: AGTTTGAGCGGGCACCCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACCTCAAACAAGTACAAACTTGCTTAGATAATAACTGGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR TCA 90 bp CCTGCTGGGAAAGTTCCTCACGGACTTAAATTGGTGGAACCCGGTTaGACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGT +
Preference number: 1 (lower is better)
Translates to: PAGKVPHGLKLVEPG*TSHHCKHPHNAMKC
Trigger: ACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAAGTCCGTGAGGAACTTTCCCAGCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR TCA 90 bp AGGAAGCAAAATGAACTTTCAGAGGAAACACTAAGTCAGCGGACGTaGACATCTATGCTCACCTGTGATCTCTGTCAAGCGTTGGTATAC +
Preference number: 1 (lower is better)
Translates to: RKQNELSEETLSQRT*TSMLTCDLCQALVY
Trigger: GTATACCAACGCTTGACAGAGATCACAGGTGAGCATAGATGTTCACGTCCGCTGACTTAGTGTTTCCTCTGAAAGTTCATTTTGCTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR TCA 90 bp ATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTCAACTTaGGACTATTGTGAGACTGCTGTGGTAATTTGCTTAAGGTCACAT +
Preference number: 1 (lower is better)
Translates to: ISGACSLHCDVSFST*DYCETAVVICLRSH
Trigger: ATGTGACCTTAAGCAAATTACCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR CCA 90 bp ACTGAAGAAAGCCTGCTGGGAAAGTTCCTCACGGACTTAAATTGGTaGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATG +
Preference number: 1 (lower is better)
Translates to: TEESLLGKFLTDLNW*NPVELPIIVNIHIM
Trigger: CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAAGTCCGTGAGGAACTTTCCCAGCAGGCTTTCTTCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR CCA 90 bp TATACTGAAGAAAGCCTGCTGGGAAAGTTCCTCACGGACTTAAATTaGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATA +
Preference number: 1 (lower is better)
Translates to: YTEESLLGKFLTDLN*WNPVELPIIVNIHI
Trigger: TATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAAGTCCGTGAGGAACTTTCCCAGCAGGCTTTCTTCAGTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR CCA 90 bp ATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATaGGAGGTTATAACTGTCATAAGATTTATGTATGTATGTGTGTAT +
Preference number: 1 (lower is better)
Translates to: MGHSSSCKLSSLNTQ*EVITVIRFMYVCVY
Trigger: ATACACACATACATACATAAATCTTATGACAGTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCCAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR CAA 90 bp CCGCTCAAACTCGTGGGTCCTCCTGTTTCTACCTTTCTTGCTCTCTaGCATGTGCTTCCACTTGTTGCTGCTCCCTTGAGAGTGCCCCGG +
Preference number: 2 (lower is better)
Translates to: PLKLVGPPVSTFLAL*HVLPLVAAPLRVPR
Trigger: CCGGGGCACTCTCAAGGGAGCAGCAACAAGTGGAAGCACATGCAAGAGAGCAAGAAAGGTAGAAACAGGAGGACCCACGAGTTTGAGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR CAA 90 bp CCACTTGTTGCTGCTCCCTTGAGAGTGCCCCGGCCTTTGTCGGCGTaGCTTTCGGTCCCTTTTCCACACTTGTTCACAGAACTCATCCAT +
Preference number: 2 (lower is better)
Translates to: PLVAAPLRVPRPLSA*LSVPFPHLFTELIH
Trigger: ATGGATGAGTTCTGTGAACAAGTGTGGAAAAGGGACCGAAAGCAACGCCGACAAAGGCCGGGGCACTCTCAAGGGAGCAGCAACAAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR CAA 90 bp CATGTGCTTCCACTTGTTGCTGCTCCCTTGAGAGTGCCCCGGCCTTaGTCGGCGTTGCTTTCGGTCCCTTTTCCACACTTGTTCACAGAA +
Preference number: 2 (lower is better)
Translates to: HVLPLVAAPLRVPRP*SALLSVPFPHLFTE
Trigger: TTCTGTGAACAAGTGTGGAAAAGGGACCGAAAGCAACGCCGACAAAGGCCGGGGCACTCTCAAGGGAGCAGCAACAAGTGGAAGCACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp ACTTTACAGTTGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTACCAGACTTTCTGGCTaGGCGTCATGCTGCTCGACA +
Preference number: 2 (lower is better)
Translates to: TLQLLSAGPALSTVMYLFTRLSG*ASCCST
Trigger: TGTCGAGCAGCATGACGCCCAGCCAGAAAGTCTGGT...AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCGGTACCAGACTTTCTaGCTGGGCGTCATGCTGCTC +
Preference number: 2 (lower is better)
Translates to: VTENRIFGGMWNHERVLCRYQTF*LGVMLL
Trigger: GAGCAGCATGACGCCCAGCCAGAAAGTCTGGTACCG...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp ACTTTACAGTTGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTCAGCTCAGACACTTCTaGGTGCCCGCTCAAACTCGT +
Preference number: 2 (lower is better)
Translates to: TLQLLSAGPALSTVMYLFQLRHF*VPAQTR
Trigger: ACGAGTTTGAGCGGGCACCCAGAAGTGTCTGAGCTG...AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp GGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATGCCCGCTCAAACTCGTaGGTCCTCCTGTTTCTACCT +
Preference number: 2 (lower is better)
Translates to: GTFFFVQTVLSQYTMGGYARSNS*VLLFLP
Trigger: AGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGC...ATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp GGGTGCCCGCTCAAACTCGTGGGTCCTCCTGTTTCTACCTTTCTTGCTCTCTTGATCCACATAATGCCATaGAATGTTCATGTGTATTGC +
Preference number: 2 (lower is better)
Translates to: GCPLKLVGPPVSTFLALLIHIMP*NVHVYC
Trigger: GCAATACACATGAACATTTCATGGCATTATGTGGAT...CAAGAGAGCAAGAAAGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGCACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR GCA 90 bp GAACAATTTACGACCTGGCAAAAAGCATGCTCTTCGAGGGGCACACCCTCTCTGATGCCTCACACATCATaGAAATATTCAAGCCAAGAG +
Preference number: 2 (lower is better)
Translates to: EQFTTWQKACSSRGTPSLMPHTS*KYSSQE
Trigger: CTCTTGGCTTGAATATTTGCATGATGTGTGAGGCAT...CAGAGAGGGTGTGCCCCTCGAAGAGCATGCTTTTTGCCAGGTCGTAAATTGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTGAAGAAAGCCTGCTaGGAAAGTTCCTCACGGACT +
Preference number: 2 (lower is better)
Translates to: VTENRIFGGMWNHERVLCLKKAC*ESSSRT
Trigger: AGTCCGTGAGGAACTTTCCCAGCAGGCTTTCTTCAG...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCAAGTTTGTACTTGTTTaGGGTTTTGGGAGGTGGCGC +
Preference number: 2 (lower is better)
Translates to: VTENRIFGGMWNHERVLCKFVLV*GFGRWR
Trigger: GCGCCACCTCCCAAAACCTCAAACAAGTACAAACTT...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp GAACAATTTACGACCTGGCAAAAAGCATGCTCTTCGAGGGGCACACCCTCTCTGACAATTTGGTGTAGTTaGGGTGAGAAGTTAATACTG +
Preference number: 2 (lower is better)
Translates to: EQFTTWQKACSSRGTPSLTIWCS*GEKLIL
Trigger: CAGTATTAACTTCTCACCTCAACTACACCAAATTGT...CAGAGAGGGTGTGCCCCTCGAAGAGCATGCTTTTTGCCAGGTCGTAAATTGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGAAGTTTGTACTTGTTTaGGGTTTTGGGAGGTGGCGC +
Preference number: 2 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWKFVLV*GFGRWR
Trigger: GCGCCACCTCCCAAAACCTCAAACAAGTACAAACTT...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGCAAGCGTTGGTATACTaGAGAAAGCCTGCTGGGAAA +
Preference number: 2 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWQALVY*RKPAGK
Trigger: TTTCCCAGCAGGCTTTCTTCAGTATACCAACGCTTG...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATCTCCATTACTCTGGATaGTGGGTGGTTTGTGTTTTT +
Preference number: 2 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHLHYSG*WVVCVF
Trigger: AAAAACACAAACCACCCATCATCCAGAGTAATGGAG...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR GCA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTAGGCCTTTGTCGGCGTTaGTTTCGGTCCCTTTTCCAC +
Preference number: 2 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLGLCRR*FRSLFH
Trigger: GTGGAAAAGGGACCGAAAGCAACGCCGACAAAGGCC...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR GCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATTGTTTCTACCTTTCTTaGTCTCTTGCATGTGCTTCC +
Preference number: 2 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHCFYLS*SLACAS
Trigger: GGAAGCACATGCAAGAGAGCAAGAAAGGTAGAAACA...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACAAGTTTGTACTTGTTTaGGGTTTTGGGAGGTGGCGC +
Preference number: 2 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNKFVLV*GFGRWR
Trigger: GCGCCACCTCCCAAAACCTCAAACAAGTACAAACTT...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp GTATGGGAAATCTTGCACTTGAGGATGATGGTGAACAAACTGGAATGGAGCATCCTCCATTACTCTGGATaGTGGGTGGTTTGTGTTTTT +
Preference number: 2 (lower is better)
Translates to: VWEILHLRMMVNKLEWSILHYSG*WVVCVF
Trigger: AAAAACACAAACCACCCATCATCCAGAGTAATGGAG...GATGCTCCATTCCAGTTTGTTCACCATCATCCTCAAGTGCAAGATTTCCCATAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp GGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATCTGCTCTCTCCACTGTaGTGTATCTTTTTCAACTTG +
Preference number: 2 (lower is better)
Translates to: GTFFFVQTVLSQYTMGGYLLSPL*CIFFNL
Trigger: CAAGTTGAAAAAGATACATCACAGTGGAGAGAGCAG...ATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR GCA 90 bp GTATGGGAAATCTTGCACTTGAGGATGATGGTGAACAAACTGGAATGGAGCATCATGCCTCACACATCATaGAAATATTCAAGCCAAGAG +
Preference number: 2 (lower is better)
Translates to: VWEILHLRMMVNKLEWSIMPHTS*KYSSQE
Trigger: CTCTTGGCTTGAATATTTGCATGATGTGTGAGGCAT...GATGCTCCATTCCAGTTTGTTCACCATCATCCTCAAGTGCAAGATTTCCCATAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATAACCTTCTATCTGTTTaGTTTCTTCAAAGGGGAAGA +
Preference number: 2 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHNLLSV*FLQRGR
Trigger: TCTTCCCCTTTGAAGAAACCAAACAGATAGAAGGTT...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACATCTTTGGTGGGATGTaGAATCATGAGCGAGTCCTA +
Preference number: 2 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNIFGGM*NHERVL
Trigger: TAGGACTCGCTCATGATTCCACATCCCACCAAAGAT...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR CAA 90 bp AAAAGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTaGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTT +
Preference number: 2 (lower is better)
Translates to: KRSNKCAFACIYTLQ*LSAGPALSTVMYLF
Trigger: AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp GTATGGGAAATCTTGCACTTGAGGATGATGGTGAACAAACTGGAATGGAGCATCATCCACATAATGCCATaGAATGTTCATGTGTATTGC +
Preference number: 2 (lower is better)
Translates to: VWEILHLRMMVNKLEWSIIHIMP*NVHVYC
Trigger: GCAATACACATGAACATTTCATGGCATTATGTGGAT...GATGCTCCATTCCAGTTTGTTCACCATCATCCTCAAGTGCAAGATTTCCCATAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR GCA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTATACTGAAGAAAGCCTaGTGGGAAAGTTCCTCACGG +
Preference number: 2 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSILKKA*WESSSR
Trigger: CCGTGAGGAACTTTCCCAGCAGGCTTTCTTCAGTAT...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR GCA 90 bp AGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTTGTGTTTTTATATCTCATACTGAAGAAAGCCTaGTGGGAAAGTTCCTCACGG +
Preference number: 2 (lower is better)
Translates to: RSMYSITLDDGWFVFLYLILKKA*WESSSR
Trigger: CCGTGAGGAACTTTCCCAGCAGGCTTTCTTCAGTAT...GAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR GCA 90 bp AGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTTGCTATCAGCGCCTTTCTTGCTCTCTTaGATGTGCTTCCACTTGTTG +
Preference number: 2 (lower is better)
Translates to: RSNKCAFACIYTLQLLSAPFLLS*MCFHLL
Trigger: CAACAAGTGGAAGCACATGCAAGAGAGCAAGAAAGG...CGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACAGAGAATGGCTTATTTaGAGCATCCCTCTTTCTCTC +
Preference number: 2 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNREWLI*SIPLSL
Trigger: GAGAGAAAGAGGGATGCTCCAAATAAGCCATTCTCT...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR GCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCACAGCTAATCTTTACTaGATATTTGCCATGGTACAT +
Preference number: 2 (lower is better)
Translates to: VTENRIFGGMWNHERVLCTANLY*IFAMVH
Trigger: ATGTACCATGGCAAATATGCAGTAAAGATTAGCTGT...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGACTCTGGATGATGGGTaGTTTGTGTTTTTATATCTC +
Preference number: 2 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWTLDDG*FVFLYL
Trigger: GAGATATAAAAACACAAACCACCCATCATCCAGAGT...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGAGAGCTAGAAAGAAATaGGAGAGTTATGTAATTGCC +
Preference number: 2 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWRARKK*ESYVIA
Trigger: GGCAATTACATAACTCTCCCATTTCTTTCTAGCTCT...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR CAA 90 bp CTTCTCCAGTACATACAAACACGAGTGCTGGTAGACAAAACATCCTaGAATCCAATCACGTTTTGGAATATTCATCTGCTTACTAAATCC +
Preference number: 2 (lower is better)
Translates to: LLQYIQTRVLVDKTS*NPITFWNIHLLTKS
Trigger: GGATTTAGTAAGCAGATGAATATTCCAAAACGTGATTGGATTCAAGGATGTTTTGTCTACCAGCACTCGTGTTTGTATGTACTGGAGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCTCCATTACTCTGGATaGTGGGTGGTTTGTGTTTTT +
Preference number: 2 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSLHYSG*WVVCVF
Trigger: AAAAACACAAACCACCCATCATCCAGAGTAATGGAG...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTAAGTAGGGACCTAAAGTaGTATACTGCCTCTTACAGA +
Preference number: 2 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLSRDLK*YTASYR
Trigger: TCTGTAAGAGGCAGTATATCACTTTAGGTCCCTACT...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR TCA 90 bp AGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTTGCTATCAGCGCATTCAGCTTGCCTTTaGAGACATATTTCCAAAAGC +
Preference number: 2 (lower is better)
Translates to: RSNKCAFACIYTLQLLSAHSACL*RHISKS
Trigger: GCTTTTGGAAATATGTCTTCAAAGGCAAGCTGAATG...CGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTAAGAGAATGGCTTATTTaGAGCATCCCTCTTTCTCTC +
Preference number: 2 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLREWLI*SIPLSL
Trigger: GAGAGAAAGAGGGATGCTCCAAATAAGCCATTCTCT...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTATGTGAACTATTTCAGTaGCGAGGGAATGACAATTTG +
Preference number: 2 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLCELFQ*RGNDNL
Trigger: CAAATTGTCATTCCCTCGCCACTGAAATAGTTCACA...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR GCA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTTACTTTGCATTTTTGTaGATGCTGAAGGATCGAAGA +
Preference number: 2 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSYFAFL*MLKDRR
Trigger: TCTTCGATCCTTCAGCATGCACAAAAATGCAAAGTA...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CCA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTAACCTTCTATCTGTTTaGTTTCTTCAAAGGGGAAGA +
Preference number: 2 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSNLLSV*FLQRGR
Trigger: TCTTCCCCTTTGAAGAAACCAAACAGATAGAAGGTT...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR CAA 90 bp AATGTTTGGACAGTTAAGACCCTATTAAATGAGAGAATGGCTTATTaGGAGCATCCCTCTTTCTCTCACTTAATGTTCCTGACAATATTT +
Preference number: 2 (lower is better)
Translates to: NVWTVKTLLNERMAY*EHPSFSHLMFLTIF
Trigger: AAATATTGTCAGGAACATTAAGTGAGAGAAAGAGGGATGCTCCAAATAAGCCATTCTCTCATTTAATAGGGTCTTAACTGTCCAAACATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR GCA 72 bp GGTTTTGGGAGGTGGCGCAGCTCAGACACTTCTGGGTaGCCGCTCAAACTCGTGGGTCCTCCTGTTTCTACC +
Preference number: 3 (lower is better)
Translates to: GFGRWRSSDTSG*PLKLVGPPVST
Trigger: GGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGCACCCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR TCA 72 bp CTCTCTTGCATGTGCTTCCACTTGTTGCTGCTCCCTTaGGAGTGCCCCGGCCTTTGTCGGCGTTGCTTTCGG +
Preference number: 3 (lower is better)
Translates to: LSCMCFHLLLLP*ECPGLCRRCFR
Trigger: CCGAAAGCAACGCCGACAAAGGCCGGGGCACTCTCAAGGGAGCAGCAACAAGTGGAAGCACATGCAAGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR CCA 72 bp TTGAGGTTTTGGGAGGTGGCGCAGCTCAGACACTTCTaGGTGCCCGCTCAAACTCGTGGGTCCTCCTGTTTC +
Preference number: 3 (lower is better)
Translates to: LRFWEVAQLRHF*VPAQTRGSSCF
Trigger: GAAACAGGAGGACCCACGAGTTTGAGCGGGCACCCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACCTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR CCA 72 bp GCAGCTCAGACACTTCTGGGTGCCCGCTCAAACTCGTaGGTCCTCCTGTTTCTACCTTTCTTGCTCTCTTGC +
Preference number: 3 (lower is better)
Translates to: AAQTLLGARSNS*VLLFLPFLLSC
Trigger: GCAAGAGAGCAAGAAAGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGCACCCAGAAGTGTCTGAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp CAAGTTTGTACTTGTTTGAGGTTTTGGGAGGTGGCGCAGCTCAGACACTTCTGGCTTGTTGCTGCTCCCTaGAGAGTGCCCCGGCCTTTG +
Preference number: 3 (lower is better)
Translates to: QVCTCLRFWEVAQLRHFWLVAAP*RVPRPL
Trigger: CAAAGGCCGGGGCACTCTCAAGGGAGCAGCAACAAG...CCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACCTCAAACAAGTACAAACTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR GCA 72 bp TCATCCATCGTGTTCAGGTTGGGGTGGTTAATGAGCTaGATGAAGTCTCGGTACCAGACTTTCTGGCTGGGC +
Preference number: 3 (lower is better)
Translates to: SSIVFRLGWLMS*MKSRYQTFWLG
Trigger: GCCCAGCCAGAAAGTCTGGTACCGAGACTTCATGCAGCTCATTAACCACCCCAACCTGAACACGATGGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR GCA 72 bp ACAGATACGGAACAATTTACGACCTGGCAAAAAGCATaGTCTTCGAGGGGCACACCCTCTCTGCCCTTAAGT +
Preference number: 3 (lower is better)
Translates to: TDTEQFTTWQKA*SSRGTPSLPLS
Trigger: ACTTAAGGGCAGAGAGGGTGTGCCCCTCGAAGAGCATGCTTTTTGCCAGGTCGTAAATTGTTCCGTATCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGCGGCCTTTGTCGGCGTaGCTTTCGGTCCCTTTTCCA +
Preference number: 3 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWRPLSA*LSVPFP
Trigger: TGGAAAAGGGACCGAAAGCAACGCCGACAAAGGCCG...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR TCA 72 bp ATGCTCACCTGTGATCTCTGTCAAGCGTTGGTATACTaGAGAAAGCCTGCTGGGAAAGTTCCTCACGGACTT +
Preference number: 3 (lower is better)
Translates to: MLTCDLCQALVY*RKPAGKVPHGL
Trigger: AAGTCCGTGAGGAACTTTCCCAGCAGGCTTTCTTCAGTATACCAACGCTTGACAGAGATCACAGGTGAGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp ACTTTACAGTTGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTATTTACACTTTACAGTaGCTATCAGCGGGGCCTGCT +
Preference number: 3 (lower is better)
Translates to: TLQLLSAGPALSTVMYLFIYTLQ*LSAGPA
Trigger: AGCAGGCCCCGCTGATAGCAACTGTAAAGTGTAAAT...AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR CCA 72 bp AGCCTGCTGGGAAAGTTCCTCACGGACTTAAATTGGTaGAACCCGGTTGAACTTCCCATCATTGTAAACATC +
Preference number: 3 (lower is better)
Translates to: SLLGKFLTDLNW*NPVELPIIVNI
Trigger: GATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAAGTCCGTGAGGAACTTTCCCAGCAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR CCA 72 bp TTATTATCTAAGCAAGTTTGTACTTGTTTGAGGTTTTaGGAGGTGGCGCAGCTCAGACACTTCTGGGTGCCC +
Preference number: 3 (lower is better)
Translates to: LLSKQVCTCLRF*EVAQLRHFWVP
Trigger: GGGCACCCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACCTCAAACAAGTACAAACTTGCTTAGATAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp GAACAATTTACGACCTGGCAAAAAGCATGCTCTTCGAGGGGCACACCCTCTCTGGAGAAATGTGTCATTTaGTTGTTAGAACATGTCCTG +
Preference number: 3 (lower is better)
Translates to: EQFTTWQKACSSRGTPSLEKCVI*LLEHVL
Trigger: CAGGACATGTTCTAACAACAAAATGACACATTTCTC...CAGAGAGGGTGTGCCCCTCGAAGAGCATGCTTTTTGCCAGGTCGTAAATTGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR GCA 72 bp ATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATaGCTCACACATCATGCAAATATTCAAGCCAAGAGG +
Preference number: 3 (lower is better)
Translates to: IFGGMWNHERVL*LTHHANIQAKR
Trigger: CCTCTTGGCTTGAATATTTGCATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR CCA 72 bp GCAATGATAAATACAGATACGGAACAATTTACGACCTaGCAAAAAGCATGCTCTTCGAGGGGCACACCCTCT +
Preference number: 3 (lower is better)
Translates to: AMINTDTEQFTT*QKACSSRGTPS
Trigger: AGAGGGTGTGCCCCTCGAAGAGCATGCTTTTTGCCAGGTCGTAAATTGTTCCGTATCTGTATTTATCATTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGCAAGTTTGTACTTGTTaGAGGTTTTGGGAGGTGGCG +
Preference number: 3 (lower is better)
Translates to: KEDISSRSMYSITLDDGWQVCTC*RFWEVA
Trigger: CGCCACCTCCCAAAACCTCAAACAAGTACAAACTTG...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp ACTTTACAGTTGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTGTAGACAAAACATCCTaGAATCCAATCACGTTTTGG +
Preference number: 3 (lower is better)
Translates to: TLQLLSAGPALSTVMYLFVDKTS*NPITFW
Trigger: CCAAAACGTGATTGGATTCAAGGATGTTTTGTCTAC...AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp ACTTTACAGTTGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTCTGAAAATAGAATCTTaGGTGGGATGTGGAATCATG +
Preference number: 3 (lower is better)
Translates to: TLQLLSAGPALSTVMYLFLKIES*VGCGIM
Trigger: CATGATTCCACATCCCACCAAAGATTCTATTTTCAG...AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR TCA 72 bp AAAGTTCCTCACGGACTTAAATTGGTGGAACCCGGTTaGACTTCCCATCATTGTAAACATCCACATAATGCC +
Preference number: 3 (lower is better)
Translates to: KVPHGLKLVEPG*TSHHCKHPHNA
Trigger: GGCATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAAGTCCGTGAGGAACTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp AGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTTGCTATCAGCGCAAGTTTGTACTTGTTaGAGGTTTTGGGAGGTGGCG +
Preference number: 3 (lower is better)
Translates to: RSNKCAFACIYTLQLLSAQVCTC*RFWEVA
Trigger: CGCCACCTCCCAAAACCTCAAACAAGTACAAACTTG...CGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR TCA 72 bp GCCTGCTCTCTCCACTGTGATGTATCTTTTTCAACTTaGGACTATTGTGAGACTGCTGTGGTAATTTGCTTA +
Preference number: 3 (lower is better)
Translates to: ACSLHCDVSFST*DYCETAVVICL
Trigger: TAAGCAAATTACCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAGAGCAGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAAGTTTGTACTTGTTaGAGGTTTTGGGAGGTGGCG +
Preference number: 3 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSQVCTC*RFWEVA
Trigger: CGCCACCTCCCAAAACCTCAAACAAGTACAAACTTG...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCTTCAATAAAATGGCTTaGCTGATGCAGTTTTTCTCC +
Preference number: 3 (lower is better)
Translates to: VTENRIFGGMWNHERVLCFNKMA*LMQFFS
Trigger: GGAGAAAAACTGCATCAGCAAAGCCATTTTATTGAA...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp GGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATGAATCCAATCACGTTTaGGAATATTCATCTGCTTAC +
Preference number: 3 (lower is better)
Translates to: GTFFFVQTVLSQYTMGGYESNHV*EYSSAY
Trigger: GTAAGCAGATGAATATTCCAAAACGTGATTGGATTC...ATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTGTCCCTTTTCCACACTaGTTCACAGAACTCATCCAT +
Preference number: 3 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSVPFPH*FTELIH
Trigger: ATGGATGAGTTCTGTGAACAAGTGTGGAAAAGGGAC...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGGAATCCAATCACGTTTaGGAATATTCATCTGCTTAC +
Preference number: 3 (lower is better)
Translates to: KEDISSRSMYSITLDDGWESNHV*EYSSAY
Trigger: GTAAGCAGATGAATATTCCAAAACGTGATTGGATTC...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACATTCATCCATTCAGCTaGCCTTTGAAGACATATTTC +
Preference number: 3 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNIHPFS*PLKTYF
Trigger: GAAATATGTCTTCAAAGGCAAGCTGAATGGATGAAT...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTAGTAGACAAAACATCCTaGAATCCAATCACGTTTTGG +
Preference number: 3 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLVDKTS*NPITFW
Trigger: CCAAAACGTGATTGGATTCAAGGATGTTTTGTCTAC...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp AGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTTGCTATCAGCGATTCATCCATTCAGCTaGCCTTTGAAGACATATTTC +
Preference number: 3 (lower is better)
Translates to: RSNKCAFACIYTLQLLSAIHPFS*PLKTYF
Trigger: GAAATATGTCTTCAAAGGCAAGCTGAATGGATGAAT...CGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR GCA 72 bp ATTATACATAAAAGAAGCAATAAGTGTGCATTTGCATaGATTTACACTTTACAGTTGCTATCAGCGGGGCCT +
Preference number: 3 (lower is better)
Translates to: IIHKRSNKCAFA*IYTLQLLSAGP
Trigger: AGGCCCCGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCTTTTATGTATAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR-3UTR CAA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTTTCAATAAAATGGCTTaGCTGATGCAGTTTTTCTCC +
Preference number: 3 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSFNKMA*LMQFFS
Trigger: GGAGAAAAACTGCATCAGCAAAGCCATTTTATTGAA...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
3UTR CCA 72 bp CTGGTAGACAAAACATCCTTGAATCCAATCACGTTTTaGAATATTCATCTGCTTACTAAATCCATGCAGTTT +
Preference number: 3 (lower is better)
Translates to: LVDKTSLNPITF*NIHLLTKSMQF
Trigger: AAACTGCATGGATTTAGTAAGCAGATGAATATTCCAAAACGTGATTGGATTCAAGGATGTTTTGTCTACCAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR CCA 72 bp AAGACATCAGTAGTAGATCAATGTACTCCATTACTCTaGATGATGGGTGGTTTGTGTTTTTATATCTCCATA +
Preference number: 3 (lower is better)
Translates to: KTSVVDQCTPLL*MMGGLCFYISI
Trigger: TATGGAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR CAA 72 bp CCACTTGTTGCTGCTCCCTTGAGAGTGCCCCGGCCTTaGTCGGCGTTGCTTTCGGTCCCTTTTCCACACTTG +
Preference number: 4 (lower is better)
Translates to: PLVAAPLRVPRP*SALLSVPFPHL
Trigger: CAAGTGTGGAAAAGGGACCGAAAGCAACGCCGACAAAGGCCGGGGCACTCTCAAGGGAGCAGCAACAAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
3UTR CAA 72 bp GCTCTCTTGCATGTGCTTCCACTTGTTGCTGCTCCCTaGAGAGTGCCCCGGCCTTTGTCGGCGTTGCTTTCG +
Preference number: 4 (lower is better)
Translates to: ALLHVLPLVAAP*RVPRPLSALLS
Trigger: CGAAAGCAACGCCGACAAAGGCCGGGGCACTCTCAAGGGAGCAGCAACAAGTGGAAGCACATGCAAGAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp GAACAATTTACGACCTGGCAAAAAGCATGCTCTTCGAGGGGCACACCCTCTCTGGGCCTTTGTCGGCGTTaGTTTCGGTCCCTTTTCCAC +
Preference number: 4 (lower is better)
Translates to: EQFTTWQKACSSRGTPSLGLCRR*FRSLFH
Trigger: GTGGAAAAGGGACCGAAAGCAACGCCGACAAAGGCC...CAGAGAGGGTGTGCCCCTCGAAGAGCATGCTTTTTGCCAGGTCGTAAATTGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030714.9
CDS-3UTR CCA 90 bp GAACAATTTACGACCTGGCAAAAAGCATGCTCTTCGAGGGGCACACCCTCTCTGGGAAGGTGTGGTAACTaGAGCTGTTGGCCAAGCCAT +
Preference number: 4 (lower is better)
Translates to: EQFTTWQKACSSRGTPSLGRCGN*SCWPSH
Trigger: ATGGCTTGGCCAACAGCTCCAGTTACCACACCTTCC...CAGAGAGGGTGTGCCCCTCGAAGAGCATGCTTTTTGCCAGGTCGTAAATTGTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp TCAGACACTTCTGGGTGCCCGCTCAAACTCGTGGGTCCTCCTGTTTCTACCTTTATACTGGCCATCTTCTaGATCCACTCGGTCTACAAC +
Preference number: 4 (lower is better)
Translates to: SDTSGCPLKLVGPPVSTFILAIF*IHSVYN
Trigger: GTTGTAGACCGAGTGGATGCAGAAGATGGCCAGTAT...AAAGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGCACCCAGAAGTGTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp TCAGACACTTCTGGGTGCCCGCTCAAACTCGTGGGTCCTCCTGTTTCTACCTTTCAGGAAGGTCCTTTGTaGAGTCAAATCCGCCAAATG +
Preference number: 4 (lower is better)
Translates to: SDTSGCPLKLVGPPVSTFQEGPL*SQIRQM
Trigger: CATTTGGCGGATTTGACTCCACAAAGGACCTTCCTG...AAAGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGCACCCAGAAGTGTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATCGGTACCAGACTTTCTaGCTGGGCGTCATGCTGCTC +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHRYQTF*LGVMLL
Trigger: GAGCAGCATGACGCCCAGCCAGAAAGTCTGGTACCG...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
3UTR CAA 72 bp CCTTTGTCGGCGTTGCTTTCGGTCCCTTTTCCACACTaGTTCACAGAACTCATCCATCGTGTTCAGGTTGGG +
Preference number: 4 (lower is better)
Translates to: PLSALLSVPFPH*FTELIHRVQVG
Trigger: CCCAACCTGAACACGATGGATGAGTTCTGTGAACAAGTGTGGAAAAGGGACCGAAAGCAACGCCGACAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp GAACAATTTACGACCTGGCAAAAAGCATGCTCTTCGAGGGGCACACCCTCTCTGAGTCTCCTTGGGGACTaGAACCACTTTAAGAACGGT +
Preference number: 4 (lower is better)
Translates to: EQFTTWQKACSSRGTPSLSLLGD*NHFKNG
Trigger: ACCGTTCTTAAAGTGGTTTCAGTCCCCAAGGAGACT...CAGAGAGGGTGTGCCCCTCGAAGAGCATGCTTTTTGCCAGGTCGTAAATTGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp CAAGTTTGTACTTGTTTGAGGTTTTGGGAGGTGGCGCAGCTCAGACACTTCTGGCGCCAAATGTTTTACTaGGACAAGTTCCTGGCCGTG +
Preference number: 4 (lower is better)
Translates to: QVCTCLRFWEVAQLRHFWRQMFY*DKFLAV
Trigger: CACGGCCAGGAACTTGTCCCAGTAAAACATTTGGCG...CCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACCTCAAACAAGTACAAACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATACCAGACTTTCTGGCTaGGCGTCATGCTGCTCGACA +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHTRLSG*ASCCST
Trigger: TGTCGAGCAGCATGACGCCCAGCCAGAAAGTCTGGT...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR CCA 90 bp GTATGGGAAATCTTGCACTTGAGGATGATGGTGAACAAACTGGAATGGAGCATCGGGTGTCAATGCCATTaGGACCGGGCACAGAGCAAA +
Preference number: 4 (lower is better)
Translates to: VWEILHLRMMVNKLEWSIGCQCH*DRAQSK
Trigger: TTTGCTCTGTGCCCGGTCCCAATGGCATTGACACCC...GATGCTCCATTCCAGTTTGTTCACCATCATCCTCAAGTGCAAGATTTCCCATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AGAATGGCTTATTTGGAGCATCCCTCTTTCTCTCACTTAATGTTCCTGACAATATCCGTCCTGATGGGGTaGTGGTGCCCCAGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: RMAYLEHPSFSHLMFLTISVLMG*WCPSVL
Trigger: CAGAACACTGGGGCACCATCACCCCATCAGGACGGA...TATTGTCAGGAACATTAAGTGAGAGAAAGAGGGATGCTCCAAATAAGCCATTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGTCCGTCCTGATGGGGTaGTGGTGCCCCAGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMSVLMG*WCPSVL
Trigger: CAGAACACTGGGGCACCATCACCCCATCAGGACGGA...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATTTGGGACCATCTCTGTaGGCATATGGACCAAGGAAC +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHLGPSL*AYGPRN
Trigger: GTTCCTTGGTCCATATGCTCACAGAGATGGTCCCAA...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATTACCAAGGCTCTCTGTaGCTTCGGACTGCATTCCAA +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHYQGSL*LRTAFQ
Trigger: TTGGAATGCAGTCCGAAGTCACAGAGAGCCTTGGTA...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp ACTTTACAGTTGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTAGGGTTGTCACTCTCTaGGATGAGATGGGCACTGAT +
Preference number: 4 (lower is better)
Translates to: TLQLLSAGPALSTVMYLFRVVTL*DEMGTD
Trigger: ATCAGTGCCCATCTCATCCCAGAGAGTGACAACCCT...AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACCGGTACCAGACTTTCTaGCTGGGCGTCATGCTGCTC +
Preference number: 4 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNRYQTF*LGVMLL
Trigger: GAGCAGCATGACGCCCAGCCAGAAAGTCTGGTACCG...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030714.9
CDS-3UTR TCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATAGTCTCCTTGGGGACTaGAACCACTTTAAGAACGGT +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHSLLGD*NHFKNG
Trigger: ACCGTTCTTAAAGTGGTTTCAGTCCCCAAGGAGACT...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGTGCAAGTCAGAGCAGTaGGTCAGTGGGTCTCCATTC +
Preference number: 4 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWCKSEQ*VSGSPF
Trigger: GAATGGAGACCCACTGACTCACTGCTCTGACTTGCA...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCTACCAAGGCTCTCTGTaGCTTCGGACTGCATTCCAA +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCYQGSL*LRTAFQ
Trigger: TTGGAATGCAGTCCGAAGTCACAGAGAGCCTTGGTA...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp GTGGTTAATGAGCTGCATGAAGTCTCGGTACCAGACTTTCTGGCTGGGCGTCATTATGATCACCCATTCTaGTCTCCTCTTTTCGATCTT +
Preference number: 4 (lower is better)
Translates to: VVNELHEVSVPDFLAGRHYDHPF*SPLFDL
Trigger: AAGATCGAAAAGAGGAGATCAGAATGGGTGATCATA...ATGACGCCCAGCCAGAAAGTCTGGTACCGAGACTTCATGCAGCTCATTAACCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATACACAGGTAATTGCCTaGATCCTTCTTCTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHTQVIA*ILLLQA
Trigger: AGCCTGCAGAAGAAGGATTCAGGCAATTACCTGTGT...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp CAAGTTTGTACTTGTTTGAGGTTTTGGGAGGTGGCGCAGCTCAGACACTTCTGGTTCTTACATCACTCATaGTGTACATGCACACAGCAG +
Preference number: 4 (lower is better)
Translates to: QVCTCLRFWEVAQLRHFWFLHHS*CTCTQQ
Trigger: CTGCTGTGTGCATGTACAGCATGAGTGATGTAAGAA...CCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACCTCAAACAAGTACAAACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp CAAGTTTGTACTTGTTTGAGGTTTTGGGAGGTGGCGCAGCTCAGACACTTCTGGTCTGTGACTTCGGACTaGATTCCAAGAATGTACTAC +
Preference number: 4 (lower is better)
Translates to: QVCTCLRFWEVAQLRHFWSVTSD*IPRMYY
Trigger: GTAGTACATTCTTGGAATGCAGTCCGAAGTCACAGA...CCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACCTCAAACAAGTACAAACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCAGGGTTGTCACTCTCTaGGATGAGATGGGCACTGAT +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCRVVTL*DEMGTD
Trigger: ATCAGTGCCCATCTCATCCCAGAGAGTGACAACCCT...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp GTATGGGAAATCTTGCACTTGAGGATGATGGTGAACAAACTGGAATGGAGCATCACAAGTTCCTGGCCGTaGATAAGGGACTCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: VWEILHLRMMVNKLEWSITSSWP*IRDSSL
Trigger: CAAGGAAGAGTCCCTTATCCACGGCCAGGAACTTGT...GATGCTCCATTCCAGTTTGTTCACCATCATCCTCAAGTGCAAGATTTCCCATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGGCCCGCTCAAACTCGTaGGTCCTCCTGTTTCTACCT +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWARSNS*VLLFLP
Trigger: AGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGC...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR TCA 90 bp GTGGTTAATGAGCTGCATGAAGTCTCGGTACCAGACTTTCTGGCTGGGCGTCATCTTAAAGATGTTGCTTaGTGTTGTGAACACTCCATA +
Preference number: 4 (lower is better)
Translates to: VVNELHEVSVPDFLAGRHLKDVA*CCEHSI
Trigger: TATGGAGTGTTCACAACATCAAGCAACATCTTTAAG...ATGACGCCCAGCCAGAAAGTCTGGTACCGAGACTTCATGCAGCTCATTAACCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGTACCAAGGCTCTCTGTaGCTTCGGACTGCATTCCAA +
Preference number: 4 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWYQGSL*LRTAFQ
Trigger: TTGGAATGCAGTCCGAAGTCACAGAGAGCCTTGGTA...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATTCTGTCCTGATGATATaGTCACCCATTCTGATCTCC +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHSVLMI*SPILIS
Trigger: GGAGATCAGAATGGGTGATCATATCATCAGGACAGA...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp GGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATACACAGGTAATTGCCTaGATCCTTCTTCTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: GTFFFVQTVLSQYTMGGYTQVIA*ILLLQA
Trigger: AGCCTGCAGAAGAAGGATTCAGGCAATTACCTGTGT...ATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGCAAAATGGGTGTCAATaGCATTGGGACCGGGCACAG +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWQNGCQ*HWDRAQ
Trigger: CTGTGCCCGGTCCCAATGGCATTGACACCCATTTTG...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACCAAAATGGGTGTCAATaGCATTGGGACCGGGCACAG +
Preference number: 4 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNQNGCQ*HWDRAQ
Trigger: CTGTGCCCGGTCCCAATGGCATTGACACCCATTTTG...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp GGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATGGCTGGGCGTCATGCTaGTCGACATTTCTTTTATCT +
Preference number: 4 (lower is better)
Translates to: GTFFFVQTVLSQYTMGGYGWASC*STFLLS
Trigger: AGATAAAAGAAATGTCGAGCAGCATGACGCCCAGCC...ATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030714.9
CDS-3UTR GCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCGGCTGGGCGTCATGCTaGTCGACATTTCTTTTATCT +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCGWASC*STFLLS
Trigger: AGATAAAAGAAATGTCGAGCAGCATGACGCCCAGCC...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR GCA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGGGCCTTTGTCGGCGTTaGTTTCGGTCCCTTTTCCAC +
Preference number: 4 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMGLCRR*FRSLFH
Trigger: GTGGAAAAGGGACCGAAAGCAACGCCGACAAAGGCC...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR GCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACTGTGCTTCCACTTGTTaGTGCTCCCTTGAGAGTGCC +
Preference number: 4 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNCASTC*CSLESA
Trigger: GGCACTCTCAAGGGAGCAGCAACAAGTGGAAGCACA...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030714.9
CDS-3UTR GCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGTGTGCTTCCACTTGTTaGTGCTCCCTTGAGAGTGCC +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWCASTC*CSLESA
Trigger: GGCACTCTCAAGGGAGCAGCAACAAGTGGAAGCACA...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR CCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGGGAAGGTGTGGTAACTaGAGCTGTTGGCCAAGCCAT +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWGRCGN*SCWPSH
Trigger: ATGGCTTGGCCAACAGCTCCAGTTACCACACCTTCC...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATACACTGGGTTGTACATaGCTGGATGACTTCTTGCAA +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHTLGCT*LDDFLQ
Trigger: TTGCAAGAAGTCATCCAGCCATGTACAACCCAGTGT...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATAGAGCAGTGAGTCAGTaGGTCTCCATTCCTTATATC +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHRAVSQ*VSIPYI
Trigger: GATATAAGGAATGGAGACCCACTGACTCACTGCTCT...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR CAA 72 bp AATAAGTGTGCATTTGCATGCATTTACACTTTACAGTaGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATG +
Preference number: 4 (lower is better)
Translates to: NKCAFACIYTLQ*LSAGPALSTVM
Trigger: CATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTGGGACCATCTCTGTaGGCATATGGACCAAGGAAC +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWLGPSL*AYGPRN
Trigger: GTTCCTTGGTCCATATGCTCACAGAGATGGTCCCAA...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATCTTTTCCAGCCCATTTaGATTCATCTCTCCTTGTGT +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHLFQPI*IHLSLC
Trigger: ACACAAGGAGAGATGAATGCAAATGGGCTGGAAAAG...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATTTCTTACATCACTCATaGTGTACATGCACACAGCAG +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHFLHHS*CTCTQQ
Trigger: CTGCTGTGTGCATGTACAGCATGAGTGATGTAAGAA...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACAGCGAGGCAGCATTCTaGACAGGCTTTGCCATAGAT +
Preference number: 4 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNSEAAF*TGFAID
Trigger: ATCTATGGCAAAGCCTGTGCAGAATGCTGCCTCGCT...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp GTATGGGAAATCTTGCACTTGAGGATGATGGTGAACAAACTGGAATGGAGCATCCGTGACACAGGTAATTaGCTGAATCCTTCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: VWEILHLRMMVNKLEWSIRDTGN*LNPSSA
Trigger: TGCAGAAGAAGGATTCAGGCAATTACCTGTGTCACG...GATGCTCCATTCCAGTTTGTTCACCATCATCCTCAAGTGCAAGATTTCCCATAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCAATATAGGTGCAGATTaGATGGAAAGCCCCAGTTCC +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCNIGAD*MESPSS
Trigger: GGAACTGGGGCTTTCCATCCAATCTGCACCTATATT...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTTGTGTTTTTATATCTCGGGTGTCAATGCCATTaGGACCGGGCACAGAGCAAA +
Preference number: 4 (lower is better)
Translates to: RSMYSITLDDGWFVFLYLGCQCH*DRAQSK
Trigger: TTTGCTCTGTGCCCGGTCCCAATGGCATTGACACCC...GAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCATCTCTGTGAGCATATaGACCAAGGAACACCCTTCT +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCISVSI*TKEHPS
Trigger: AGAAGGGTGTTCCTTGGTCCATATGCTCACAGAGAT...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACACAAGTTCCTGGCCGTaGATAAGGGACTCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNTSSWP*IRDSSL
Trigger: CAAGGAAGAGTCCCTTATCCACGGCCAGGAACTTGT...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGCGCCAAATGTTTTACTaGGACAAGTTCCTGGCCGTG +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWRQMFY*DKFLAV
Trigger: CACGGCCAGGAACTTGTCCCAGTAAAACATTTGGCG...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp ACTTTACAGTTGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTTGGGTTGTACATGGCTaGATGACTTCTTGCAAAAGT +
Preference number: 4 (lower is better)
Translates to: TLQLLSAGPALSTVMYLFWVVHG*MTSCKS
Trigger: ACTTTTGCAAGAAGTCATCCAGCCATGTACAACCCA...AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp GTATGGGAAATCTTGCACTTGAGGATGATGGTGAACAAACTGGAATGGAGCATCAGAGCAGTGAGTCAGTaGGTCTCCATTCCTTATATC +
Preference number: 4 (lower is better)
Translates to: VWEILHLRMMVNKLEWSIRAVSQ*VSIPYI
Trigger: GATATAAGGAATGGAGACCCACTGACTCACTGCTCT...GATGCTCCATTCCAGTTTGTTCACCATCATCCTCAAGTGCAAGATTTCCCATAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTAGCCCGCTCAAACTCGTaGGTCCTCCTGTTTCTACCT +
Preference number: 4 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLARSNS*VLLFLP
Trigger: AGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGC...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030714.9
CDS-3UTR TCA 90 bp AGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTTGCTATCAGCGTTGGGACCATCTCTGTaGGCATATGGACCAAGGAAC +
Preference number: 4 (lower is better)
Translates to: RSNKCAFACIYTLQLLSALGPSL*AYGPRN
Trigger: GTTCCTTGGTCCATATGCTCACAGAGATGGTCCCAA...CGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATTTCTTGCAAAAGTTATaGCATCATCAGGAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHFLQKL*HHQEGP
Trigger: AGGACCTTCCTGATGATGTCATAACTTTTGCAAGAA...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGAGTCTCCTTGGGGACTaGAACCACTTTAAGAACGGT +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWSLLGD*NHFKNG
Trigger: ACCGTTCTTAAAGTGGTTTCAGTCCCCAAGGAGACT...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATTATGATCACCCATTCTaGTCTCCTCTTTTCGATCTT +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHYDHPF*SPLFDL
Trigger: AAGATCGAAAAGAGGAGATCAGAATGGGTGATCATA...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACACACAGGTAATTGCCTaGATCCTTCTTCTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNTQVIA*ILLLQA
Trigger: AGCCTGCAGAAGAAGGATTCAGGCAATTACCTGTGT...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTTTTCCAGCCCATTTaGATTCATCTCTCCTTGTGT +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCLFQPI*IHLSLC
Trigger: ACACAAGGAGAGATGAATGCAAATGGGCTGGAAAAG...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACATACTGGCCATCTTCTaGATCCACTCGGTCTACAAC +
Preference number: 4 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNILAIF*IHSVYN
Trigger: GTTGTAGACCGAGTGGATGCAGAAGATGGCCAGTAT...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCTGTTTCTACCTTTCTTaGTCTCTTGCATGTGCTTCC +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCCFYLS*SLACAS
Trigger: GGAAGCACATGCAAGAGAGCAAGAAAGGTAGAAACA...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR CCA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGAATATAGGTGCAGATTaGATGGAAAGCCCCAGTTCC +
Preference number: 4 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWNIGAD*MESPSS
Trigger: GGAACTGGGGCTTTCCATCCAATCTGCACCTATATT...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGCAGGAAGGTCCTTTGTaGAGTCAAATCCGCCAAATG +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWQEGPL*SQIRQM
Trigger: CATTTGGCGGATTTGACTCCACAAAGGACCTTCCTG...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCTGGGTTGTACATGGCTaGATGACTTCTTGCAAAAGT +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCWVVHG*MTSCKS
Trigger: ACTTTTGCAAGAAGTCATCCAGCCATGTACAACCCA...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp GGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATTGGGTTGTACATGGCTaGATGACTTCTTGCAAAAGT +
Preference number: 4 (lower is better)
Translates to: GTFFFVQTVLSQYTMGGYWVVHG*MTSCKS
Trigger: ACTTTTGCAAGAAGTCATCCAGCCATGTACAACCCA...ATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp ACTTTACAGTTGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTATTTATAGGAAACACTaGGTTGTACATGGCTGGATG +
Preference number: 4 (lower is better)
Translates to: TLQLLSAGPALSTVMYLFIYRKH*VVHGWM
Trigger: CATCCAGCCATGTACAACCCAGTGTTTCCTATAAAT...AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCTTCTCTCTTCAAGGCTaGGCCCATGATGATTATCAT +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCFSLQG*AHDDYH
Trigger: ATGATAATCATCATGGGCCCAGCCTTGAAGAGAGAA...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp GGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATTTCTTGCAAAAGTTATaGCATCATCAGGAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: GTFFFVQTVLSQYTMGGYFLQKL*HHQEGP
Trigger: AGGACCTTCCTGATGATGTCATAACTTTTGCAAGAA...ATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGTGCAAGTCAGAGCAGTaGGTCAGTGGGTCTCCATTC +
Preference number: 4 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLCKSEQ*VSGSPF
Trigger: GAATGGAGACCCACTGACTCACTGCTCTGACTTGCA...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCATTGTTCTTTCCGTTTaGATAGTTTGCTCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCIVLSV*IVCSGC
Trigger: ACAGCCAGAGCAAACTATGCAAACGGAAAGAACAAT...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp GTATGGGAAATCTTGCACTTGAGGATGATGGTGAACAAACTGGAATGGAGCATCATTGTTCTTTCCGTTTaGATAGTTTGCTCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: VWEILHLRMMVNKLEWSIIVLSV*IVCSGC
Trigger: ACAGCCAGAGCAAACTATGCAAACGGAAAGAACAAT...GATGCTCCATTCCAGTTTGTTCACCATCATCCTCAAGTGCAAGATTTCCCATAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGCAAAATGGGTGTCAATaGCATTGGGACCGGGCACAG +
Preference number: 4 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLQNGCQ*HWDRAQ
Trigger: CTGTGCCCGGTCCCAATGGCATTGACACCCATTTTG...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGATACTGGCCATCTTCTaGATCCACTCGGTCTACAAC +
Preference number: 4 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMILAIF*IHSVYN
Trigger: GTTGTAGACCGAGTGGATGCAGAAGATGGCCAGTAT...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGCGTGACACAGGTAATTaGCTGAATCCTTCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWRDTGN*LNPSSA
Trigger: TGCAGAAGAAGGATTCAGGCAATTACCTGTGTCACG...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGCCTTTCTTGCTCTCTTaGATGTGCTTCCACTTGTTG +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWPFLLS*MCFHLL
Trigger: CAACAAGTGGAAGCACATGCAAGAGAGCAAGAAAGG...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR CCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATCCTTGTGTAAGATACTaGCCACACAATCTTTTGAAA +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHPCVRY*PHNLLK
Trigger: TTTCAAAAGATTGTGTGGCCAGTATCTTACACAAGG...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTAAGGGTTGTCACTCTCTaGGATGAGATGGGCACTGAT +
Preference number: 4 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLRVVTL*DEMGTD
Trigger: ATCAGTGCCCATCTCATCCCAGAGAGTGACAACCCT...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCGGCCACACAATCTTTTaGAAATCTTTAATGTTCACC +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCGHTIF*KSLMFT
Trigger: GGTGAACATTAAAGATTTTCAAAAGATTGTGTGGCC...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGTTCTTGCAAAAGTTATaGCATCATCAGGAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWFLQKL*HHQEGP
Trigger: AGGACCTTCCTGATGATGTCATAACTTTTGCAAGAA...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp GGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATTCTTCATTTCTCCTCTaGAATTGCCAATATACCAAG +
Preference number: 4 (lower is better)
Translates to: GTFFFVQTVLSQYTMGGYSSFLL*NCQYTK
Trigger: CTTGGTATATTGGCAATTTCAGAGGAGAAATGAAGA...ATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGTCTGTCCTGATGATATaGTCACCCATTCTGATCTCC +
Preference number: 4 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMSVLMI*SPILIS
Trigger: GGAGATCAGAATGGGTGATCATATCATCAGGACAGA...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCCATCGTCATCTTTATaGAGAAGTTCTTCCAAATGT +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCPSSSL*RSSSKC
Trigger: ACATTTGGAAGAACTTCTTCATAAAGATGACGATGG...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp GGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATGTGTTCTCCGTCTATTaGATTTTCTCGGAAGAAAAA +
Preference number: 4 (lower is better)
Translates to: GTFFFVQTVLSQYTMGGYVFSVY*IFSEEK
Trigger: TTTTTCTTCCGAGAAAATGCAATAGACGGAGAACAC...ATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATATTAGGAATACATCCTaGAATTCATCAAAATGGGTG +
Preference number: 4 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHIRNTS*NSSKWV
Trigger: CACCCATTTTGATGAATTGCAGGATGTATTCCTAAT...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTCTTACATCACTCATaGTGTACATGCACACAGCAG +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWFLHHS*CTCTQQ
Trigger: CTGCTGTGTGCATGTACAGCATGAGTGATGTAAGAA...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGAGCGAGGCAGCATTCTaGACAGGCTTTGCCATAGAT +
Preference number: 4 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLSEAAF*TGFAID
Trigger: ATCTATGGCAAAGCCTGTGCAGAATGCTGCCTCGCT...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGTCTGTGACTTCGGACTaGATTCCAAGAATGTACTAC +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWSVTSD*IPRMYY
Trigger: GTAGTACATTCTTGGAATGCAGTCCGAAGTCACAGA...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AGAATGGCTTATTTGGAGCATCCCTCTTTCTCTCACTTAATGTTCCTGACAATACCTTTCTTGCTCTCTTaGATGTGCTTCCACTTGTTG +
Preference number: 4 (lower is better)
Translates to: RMAYLEHPSFSHLMFLTIPFLLS*MCFHLL
Trigger: CAACAAGTGGAAGCACATGCAAGAGAGCAAGAAAGG...TATTGTCAGGAACATTAAGTGAGAGAAAGAGGGATGCTCCAAATAAGCCATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030714.9
CDS-3UTR GCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGTGTTTCTACCTTTCTTaGTCTCTTGCATGTGCTTCC +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWCFYLS*SLACAS
Trigger: GGAAGCACATGCAAGAGAGCAAGAAAGGTAGAAACA...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR CCA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCCTTGTGTAAGATACTaGCCACACAATCTTTTGAAA +
Preference number: 4 (lower is better)
Translates to: VTENRIFGGMWNHERVLCPCVRY*PHNLLK
Trigger: TTTCAAAAGATTGTGTGGCCAGTATCTTACACAAGG...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGACAAGTTCCTGGCCGTaGATAAGGGACTCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLTSSWP*IRDSSL
Trigger: CAAGGAAGAGTCCCTTATCCACGGCCAGGAACTTGT...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGACACTGGGTTGTACATaGCTGGATGACTTCTTGCAA +
Preference number: 4 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMTLGCT*LDDFLQ
Trigger: TTGCAAGAAGTCATCCAGCCATGTACAACCCAGTGT...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGCCATCGTCATCTTTATaGAGAAGTTCTTCCAAATGT +
Preference number: 4 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWPSSSL*RSSSKC
Trigger: ACATTTGGAAGAACTTCTTCATAAAGATGACGATGG...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTTGCTATCAGCGTCTGTGACTTCGGACTaGATTCCAAGAATGTACTAC +
Preference number: 4 (lower is better)
Translates to: RSNKCAFACIYTLQLLSASVTSD*IPRMYY
Trigger: GTAGTACATTCTTGGAATGCAGTCCGAAGTCACAGA...CGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGACCTTAAGAAGAGTTTaGATGAATCCGTGTTCCACA +
Preference number: 4 (lower is better)
Translates to: KEDISSRSMYSITLDDGWTLRRV*MNPCST
Trigger: TGTGGAACACGGATTCATGCAAACTCTTCTTAAGGT...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTTGTGTTTTTATATCTCAATATAGGTGCAGATTaGATGGAAAGCCCCAGTTCC +
Preference number: 4 (lower is better)
Translates to: RSMYSITLDDGWFVFLYLNIGAD*MESPSS
Trigger: GGAACTGGGGCTTTCCATCCAATCTGCACCTATATT...GAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTAACACTGGGTTGTACATaGCTGGATGACTTCTTGCAA +
Preference number: 4 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLTLGCT*LDDFLQ
Trigger: TTGCAAGAAGTCATCCAGCCATGTACAACCCAGTGT...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTAGAGCAGTGAGTCAGTaGGTCTCCATTCCTTATATC +
Preference number: 4 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSRAVSQ*VSIPYI
Trigger: GATATAAGGAATGGAGACCCACTGACTCACTGCTCT...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACGGCCACACAATCTTTTaGAAATCTTTAATGTTCACC +
Preference number: 4 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNGHTIF*KSLMFT
Trigger: GGTGAACATTAAAGATTTTCAAAAGATTGTGTGGCC...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGTCTGTCCTGATGATATaGTCACCCATTCTGATCTCC +
Preference number: 4 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLSVLMI*SPILIS
Trigger: GGAGATCAGAATGGGTGATCATATCATCAGGACAGA...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGATCTCTGTGAGCATATaGACCAAGGAACACCCTTCT +
Preference number: 4 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLISVSI*TKEHPS
Trigger: AGAAGGGTGTTCCTTGGTCCATATGCTCACAGAGAT...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTTGTGTTTTTATATCTCTTCTCTCTTCAAGGCTaGGCCCATGATGATTATCAT +
Preference number: 4 (lower is better)
Translates to: RSMYSITLDDGWFVFLYLFSLQG*AHDDYH
Trigger: ATGATAATCATCATGGGCCCAGCCTTGAAGAGAGAA...GAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR CAA 72 bp ACAGTTAAGACCCTATTAAATGAGAGAATGGCTTATTaGGAGCATCCCTCTTTCTCTCACTTAATGTTCCTG +
Preference number: 4 (lower is better)
Translates to: TVKTLLNERMAY*EHPSFSHLMFL
Trigger: CAGGAACATTAAGTGAGAGAAAGAGGGATGCTCCAAATAAGCCATTCTCTCATTTAATAGGGTCTTAACTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTTGCTATCAGCGCTTAAAGATGTTGCTTaGTGTTGTGAACACTCCATA +
Preference number: 4 (lower is better)
Translates to: RSNKCAFACIYTLQLLSALKDVA*CCEHSI
Trigger: TATGGAGTGTTCACAACATCAAGCAACATCTTTAAG...CGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTTATGATCACCCATTCTaGTCTCCTCTTTTCGATCTT +
Preference number: 4 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSYDHPF*SPLFDL
Trigger: AAGATCGAAAAGAGGAGATCAGAATGGGTGATCATA...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGCCATCGTCATCTTTATaGAGAAGTTCTTCCAAATGT +
Preference number: 4 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMPSSSL*RSSSKC
Trigger: ACATTTGGAAGAACTTCTTCATAAAGATGACGATGG...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTTGTGTTTTTATATCTCATTGTTCTTTCCGTTTaGATAGTTTGCTCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: RSMYSITLDDGWFVFLYLIVLSV*IVCSGC
Trigger: ACAGCCAGAGCAAACTATGCAAACGGAAAGAACAAT...GAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGTCAAAATGTGAGTCCTaGAGCTTAAAAATGTTGTCC +
Preference number: 4 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMSKCES*SLKMLS
Trigger: GGACAACATTTTTAAGCTGCAGGACTCACATTTTGA...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTTGCTATCAGCGTCAAAATGTGAGTCCTaGAGCTTAAAAATGTTGTCC +
Preference number: 4 (lower is better)
Translates to: RSNKCAFACIYTLQLLSASKCES*SLKMLS
Trigger: GGACAACATTTTTAAGCTGCAGGACTCACATTTTGA...CGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp AGAATGGCTTATTTGGAGCATCCCTCTTTCTCTCACTTAATGTTCCTGACAATAGTGTTCTCCGTCTATTaGATTTTCTCGGAAGAAAAA +
Preference number: 4 (lower is better)
Translates to: RMAYLEHPSFSHLMFLTIVFSVY*IFSEEK
Trigger: TTTTTCTTCCGAGAAAATGCAATAGACGGAGAACAC...TATTGTCAGGAACATTAAGTGAGAGAAAGAGGGATGCTCCAAATAAGCCATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTACCTTAAGAAGAGTTTaGATGAATCCGTGTTCCACA +
Preference number: 4 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSTLRRV*MNPCST
Trigger: TGTGGAACACGGATTCATGCAAACTCTTCTTAAGGT...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGCCTTGTGTAAGATACTaGCCACACAATCTTTTGAAA +
Preference number: 4 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMPCVRY*PHNLLK
Trigger: TTTCAAAAGATTGTGTGGCCAGTATCTTACACAAGG...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTATTTATAGGAAACACTaGGTTGTACATGGCTGGATG +
Preference number: 4 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSIYRKH*VVHGWM
Trigger: CATCCAGCCATGTACAACCCAGTGTTTCCTATAAAT...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp AGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTTGTGTTTTTATATCTCATTTATAGGAAACACTaGGTTGTACATGGCTGGATG +
Preference number: 4 (lower is better)
Translates to: RSMYSITLDDGWFVFLYLIYRKH*VVHGWM
Trigger: CATCCAGCCATGTACAACCCAGTGTTTCCTATAAAT...GAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CCA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGTTCTCTCTTCAAGGCTaGGCCCATGATGATTATCAT +
Preference number: 4 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLFSLQG*AHDDYH
Trigger: ATGATAATCATCATGGGCCCAGCCTTGAAGAGAGAA...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR CAA 72 bp TACATACAAACACGAGTGCTGGTAGACAAAACATCCTaGAATCCAATCACGTTTTGGAATATTCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: YIQTRVLVDKTS*NPITFWNIHLL
Trigger: AAGCAGATGAATATTCCAAAACGTGATTGGATTCAAGGATGTTTTGTCTACCAGCACTCGTGTTTGTATGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTAGGCCACACAATCTTTTaGAAATCTTTAATGTTCACC +
Preference number: 4 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLGHTIF*KSLMFT
Trigger: GGTGAACATTAAAGATTTTCAAAAGATTGTGTGGCC...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTTGTGTTTTTATATCTCCTTAAAGATGTTGCTTaGTGTTGTGAACACTCCATA +
Preference number: 4 (lower is better)
Translates to: RSMYSITLDDGWFVFLYLLKDVA*CCEHSI
Trigger: TATGGAGTGTTCACAACATCAAGCAACATCTTTAAG...GAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp AGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTTGTGTTTTTATATCTCTCTTCATTTCTCCTCTaGAATTGCCAATATACCAAG +
Preference number: 4 (lower is better)
Translates to: RSMYSITLDDGWFVFLYLSSFLL*NCQYTK
Trigger: CTTGGTATATTGGCAATTTCAGAGGAGAAATGAAGA...GAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR TCA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTTCTTCATTTCTCCTCTaGAATTGCCAATATACCAAG +
Preference number: 4 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSSSFLL*NCQYTK
Trigger: CTTGGTATATTGGCAATTTCAGAGGAGAAATGAAGA...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGATTAGGAATACATCCTaGAATTCATCAAAATGGGTG +
Preference number: 4 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMIRNTS*NSSKWV
Trigger: CACCCATTTTGATGAATTGCAGGATGTATTCCTAAT...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGACCTTAAGAAGAGTTTaGATGAATCCGTGTTCCACA +
Preference number: 4 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLTLRRV*MNPCST
Trigger: TGTGGAACACGGATTCATGCAAACTCTTCTTAAGGT...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGGTGTTCTCCGTCTATTaGATTTTCTCGGAAGAAAAA +
Preference number: 4 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLVFSVY*IFSEEK
Trigger: TTTTTCTTCCGAGAAAATGCAATAGACGGAGAACAC...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
3UTR CAA 72 bp GACAATGTTCTTTTCATGAGACACATGAATTTAATTTaGCTCTTGATCCTTCAGGATGCCTCTAATGACTGT +
Preference number: 4 (lower is better)
Translates to: DNVLFMRHMNLI*LLILQDASNDC
Trigger: ACAGTCATTAGAGGCATCCTGAAGGATCAAGAGCAAAATTAAATTCATGTGTCTCATGAAAAGAACATTGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR GCA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGATTAGGAATACATCCTaGAATTCATCAAAATGGGTG +
Preference number: 4 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLIRNTS*NSSKWV
Trigger: CACCCATTTTGATGAATTGCAGGATGTATTCCTAAT...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS TCA 90 bp GGATCATTGAGCCACCGGGAGTCATGCTGCTCCGTCCTGATGGGGTaGTGGTGCCCCAGTGTTCTGAAGATAGCGAAGTCCCGTCCCATG +
Preference number: 5 (lower is better)
Translates to: GSLSHRESCCSVLMG*WCPSVLKIAKSRPM
Trigger: CATGGGACGGGACTTCGCTATCTTCAGAACACTGGGGCACCATCACCCCATCAGGACGGAGCAGCATGACTCCCGGTGGCTCAATGATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATCTTGTTGCTGCTCCCTaGAGAGTGCCCCGGCCTTTG +
Preference number: 5 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHLVAAP*RVPRPL
Trigger: CAAAGGCCGGGGCACTCTCAAGGGAGCAGCAACAAG...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS TCA 90 bp AGTTTGCATGAATCCGTGTTCCACAGCGTGACACAGGTAATTGCCTaGATCCTTCTTCTGCAGGCTACGGAGCAGGAGCCCTTGTTCTGT +
Preference number: 5 (lower is better)
Translates to: SLHESVFHSVTQVIA*ILLLQATEQEPLFC
Trigger: ACAGAACAAGGGCTCCTGCTCCGTAGCCTGCAGAAGAAGGATTCAGGCAATTACCTGTGTCACGCTGTGGAACACGGATTCATGCAAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATTGGGTGTCAATGCCATaGGGACCGGGCACAGAGCAA +
Preference number: 5 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHWVSMP*GPGTEQ
Trigger: TTGCTCTGTGCCCGGTCCCAATGGCATTGACACCCA...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp ACTTTACAGTTGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTTGGGTGTCAATGCCATaGGGACCGGGCACAGAGCAA +
Preference number: 5 (lower is better)
Translates to: TLQLLSAGPALSTVMYLFWVSMP*GPGTEQ
Trigger: TTGCTCTGTGCCCGGTCCCAATGGCATTGACACCCA...AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp TCAGACACTTCTGGGTGCCCGCTCAAACTCGTGGGTCCTCCTGTTTCTACCTTTTGCATTCATCTCTCCTaGTGTAAGATACTGGCCACA +
Preference number: 5 (lower is better)
Translates to: SDTSGCPLKLVGPPVSTFCIHLS*CKILAT
Trigger: TGTGGCCAGTATCTTACACAAGGAGAGATGAATGCA...AAAGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGCACCCAGAAGTGTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp GGGACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATTGGGTGTCAATGCCATaGGGACCGGGCACAGAGCAA +
Preference number: 5 (lower is better)
Translates to: GTFFFVQTVLSQYTMGGYWVSMP*GPGTEQ
Trigger: TTGCTCTGTGCCCGGTCCCAATGGCATTGACACCCA...ATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS CCA 90 bp TTGGGGTGGTTAATGAGCTGCATGAAGTCTCGGTACCAGACTTTCTaGCTGGGCGTCATGCTGCTCGACATTTCTTTTATCTTAGAGCCA +
Preference number: 5 (lower is better)
Translates to: LGWLMSCMKSRYQTF*LGVMLLDISFILEP
Trigger: TGGCTCTAAGATAAAAGAAATGTCGAGCAGCATGACGCCCAGCCAGAAAGTCTGGTACCGAGACTTCATGCAGCTCATTAACCACCCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR CAA 90 bp GGGTGCCCGCTCAAACTCGTGGGTCCTCCTGTTTCTACCTTTCTTGCTCTCTTGGATCCCTTAAAGATGTaGCTTGATGTTGTGAACACT +
Preference number: 5 (lower is better)
Translates to: GCPLKLVGPPVSTFLALLDPLKM*LDVVNT
Trigger: AGTGTTCACAACATCAAGCAACATCTTTAAGGGATC...CAAGAGAGCAAGAAAGGTAGAAACAGGAGGACCCACGAGTTTGAGCGGGCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATACGGAGCAGGAGCCCTaGTTCTGTCCTGATGATATG +
Preference number: 5 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHTEQEP*FCPDDM
Trigger: CATATCATCAGGACAGAACAAGGGCTCCTGCTCCGT...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp CAAGTTTGTACTTGTTTGAGGTTTTGGGAGGTGGCGCAGCTCAGACACTTCTGGCATTGTTCTTTCCGTTaGCATAGTTTGCTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: QVCTCLRFWEVAQLRHFWHCSFR*HSLLWL
Trigger: CAGCCAGAGCAAACTATGCAAACGGAAAGAACAATG...CCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACCTCAAACAAGTACAAACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGCGGCCTTTGTCGGCGTaGCTTTCGGTCCCTTTTCCA +
Preference number: 5 (lower is better)
Translates to: KEDISSRSMYSITLDDGWRPLSA*LSVPFP
Trigger: TGGAAAAGGGACCGAAAGCAACGCCGACAAAGGCCG...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR CAA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGCTTGTTGCTGCTCCCTaGAGAGTGCCCCGGCCTTTG +
Preference number: 5 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMLVAAP*RVPRPL
Trigger: CAAAGGCCGGGGCACTCTCAAGGGAGCAGCAACAAG...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS CCA 90 bp AAATATACTTTGTCATCTTCAGGGTTGTCACTCTCTGGGATGAGATaGGCACTGATGAATCTAGGATCATTGAGCCACCGGGAGTCATGC +
Preference number: 5 (lower is better)
Translates to: KYTLSSSGLSLSGMR*ALMNLGSLSHRESC
Trigger: GCATGACTCCCGGTGGCTCAATGATCCTAGATTCATCAGTGCCCATCTCATCCCAGAGAGTGACAACCCTGAAGATGACAAAGTATATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CCA 90 bp CAGAGTACAACTCACCGTCTATTAGAAGAGAGGCAGTCAGTAGTTTaGGATCATAAGGGCTCTTCCCACGACCGTTTTCAAAATGTGAGT +
Preference number: 5 (lower is better)
Translates to: QSTTHRLLEERQSVV*DHKGSSHDRFQNVS
Trigger: ACTCACATTTTGAAAACGGTCGTGGGAAGAGCCCTTATGATCCCAAACTACTGACTGCCTCTCTTCTAATAGACGGTGAGTTGTACTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp CAAGTTTGTACTTGTTTGAGGTTTTGGGAGGTGGCGCAGCTCAGACACTTCTGGAGGACCTTGATGAAATaGGCACATTCTTTCAGGATA +
Preference number: 5 (lower is better)
Translates to: QVCTCLRFWEVAQLRHFWRTLMK*AHSFRI
Trigger: TATCCTGAAAGAATGTGCCAATTTCATCAAGGTCCT...CCAGAAGTGTCTGAGCTGCGCCACCTCCCAAAACCTCAAACAAGTACAAACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCATAAGGGACTCTTCCTaGGTAAGGCACCCACTGATA +
Preference number: 5 (lower is better)
Translates to: VTENRIFGGMWNHERVLCIRDSS*VRHPLI
Trigger: TATCAGTGGGTGCCTTACCAAGGAAGAGTCCCTTAT...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp ACTTTACAGTTGCTATCAGCGGGGCCTGCTCTCTCCACTGTGATGTATCTTTTTGCCAATGTACAGCTGTaGCTGTTTAGTAGAAAGCTC +
Preference number: 5 (lower is better)
Translates to: TLQLLSAGPALSTVMYLFANVQL*LFSRKL
Trigger: GAGCTTTCTACTAAACAGCAACAGCTGTACATTGGC...AAAAAGATACATCACAGTGGAGAGAGCAGGCCCCGCTGATAGCAACTGTAAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp AGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCCTCACACATCATGTCCCTTTTCCACACTaGTTCACAGAACTCATCCAT +
Preference number: 5 (lower is better)
Translates to: RIFGGMWNHERVLCLTHHVPFPH*FTELIH
Trigger: ATGGATGAGTTCTGTGAACAAGTGTGGAAAAGGGAC...ATGATGTGTGAGGCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR CAA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTACGGCCTTTGTCGGCGTaGCTTTCGGTCCCTTTTCCA +
Preference number: 5 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLRPLSA*LSVPFP
Trigger: TGGAAAAGGGACCGAAAGCAACGCCGACAAAGGCCG...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030714.9
CDS TCA 90 bp TCGGACTGCATTCCAAGAATGTACTACTGTTTTCCACTCCATAGATaGTTCTCTCTTCAAGGCTGGGCCCATGATGATTATCATGGTGCT +
Preference number: 5 (lower is better)
Translates to: SDCIPRMYYCFPLHR*FSLQGWAHDDYHGA
Trigger: AGCACCATGATAATCATCATGGGCCCAGCCTTGAAGAGAGAATCATCTATGGAGTGGAAAACAGTAGTACATTCTTGGAATGCAGTCCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp GTATGGGAAATCTTGCACTTGAGGATGATGGTGAACAAACTGGAATGGAGCATCCATTGTTCTTTCCGTTaGCATAGTTTGCTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: VWEILHLRMMVNKLEWSIHCSFR*HSLLWL
Trigger: CAGCCAGAGCAAACTATGCAAACGGAAAGAACAATG...GATGCTCCATTCCAGTTTGTTCACCATCATCCTCAAGTGCAAGATTTCCCATAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGATAAGGGACTCTTCCTaGGTAAGGCACCCACTGATA +
Preference number: 5 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWIRDSS*VRHPLI
Trigger: TATCAGTGGGTGCCTTACCAAGGAAGAGTCCCTTAT...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACCATCAGGAAGGTCCTTaGTGGAGTCAAATCCGCCAA +
Preference number: 5 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNHQEGP*WSQIRQ
Trigger: TTGGCGGATTTGACTCCACAAAGGACCTTCCTGATG...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCGCCAATGTACAGCTGTaGCTGTTTAGTAGAAAGCTC +
Preference number: 5 (lower is better)
Translates to: VTENRIFGGMWNHERVLCANVQL*LFSRKL
Trigger: GAGCTTTCTACTAAACAGCAACAGCTGTACATTGGC...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp AGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTTGCTATCAGCGACGGAGCAGGAGCCCTaGTTCTGTCCTGATGATATG +
Preference number: 5 (lower is better)
Translates to: RSNKCAFACIYTLQLLSATEQEP*FCPDDM
Trigger: CATATCATCAGGACAGAACAAGGGCTCCTGCTCCGT...CGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp GTGACTGAAAATAGAATCTTTGGTGGGATGTGGAATCATGAGCGAGTCCTATGCACCTTTCTTGCTCTCTaGCATGTGCTTCCACTTGTT +
Preference number: 5 (lower is better)
Translates to: VTENRIFGGMWNHERVLCTFLAL*HVLPLV
Trigger: AACAAGTGGAAGCACATGCAAGAGAGCAAGAAAGGT...GCATAGGACTCGCTCATGATTCCACATCCCACCAAAGATTCTATTTTCAGTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS-3UTR CAA 90 bp AAAGAAGACATCAGTAGTAGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTGTCATCTTCAGGGTaGTCACTCTCTGGGATGAGA +
Preference number: 5 (lower is better)
Translates to: KEDISSRSMYSITLDDGWLSSSG*SLSGMR
Trigger: TCTCATCCCAGAGAGTGACAACCCTGAAGATGACAA...CCACCCATCATCCAGAGTAATGGAGTACATTGATCTACTACTGATGTCTTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp GTATGGGAAATCTTGCACTTGAGGATGATGGTGAACAAACTGGAATGGAGCATCTACCTTAAGAAGAGTTaGCATGAATCCGTGTTCCAC +
Preference number: 5 (lower is better)
Translates to: VWEILHLRMMVNKLEWSIYLKKS*HESVFH
Trigger: GTGGAACACGGATTCATGCAAACTCTTCTTAAGGTA...GATGCTCCATTCCAGTTTGTTCACCATCATCCTCAAGTGCAAGATTTCCCATAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS TCA 90 bp ATCTTCATTTCTCCTCTGAAATTGCCAATATACCAAGGCTCTCTGTaGCTTCGGACTGCATTCCAAGAATGTACTACTGTTTTCCACTCC +
Preference number: 5 (lower is better)
Translates to: IFISPLKLPIYQGSL*LRTAFQECTTVFHS
Trigger: GGAGTGGAAAACAGTAGTACATTCTTGGAATGCAGTCCGAAGTCACAGAGAGCCTTGGTATATTGGCAATTTCAGAGGAGAAATGAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp ACATTCTTCTTCGTGCAAACTGTCCTCTCTCAATACACAATGGGAGGTTATAACTGCATTCATCTCTCCTaGTGTAAGATACTGGCCACA +
Preference number: 5 (lower is better)
Translates to: TFFFVQTVLSQYTMGGYNCIHLS*CKILAT
Trigger: TGTGGCCAGTATCTTACACAAGGAGAGATGAATGCA...GTTATAACCTCCCATTGTGTATTGAGAGAGGACAGTTTGCACGAAGAAGAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGACGGAGCAGGAGCCCTaGTTCTGTCCTGATGATATG +
Preference number: 5 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLTEQEP*FCPDDM
Trigger: CATATCATCAGGACAGAACAAGGGCTCCTGCTCCGT...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp CTCTCCACTGTGATGTATCTTTTTCAACTTGAGACTATTGTGAGACTGCTGTGGTACCTTAAGAAGAGTTaGCATGAATCCGTGTTCCAC +
Preference number: 5 (lower is better)
Translates to: LSTVMYLFQLETIVRLLWYLKKS*HESVFH
Trigger: GTGGAACACGGATTCATGCAAACTCTTCTTAAGGTA...CCACAGCAGTCTCACAATAGTCTCAAGTTGAAAAAGATACATCACAGTGGAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGCATTGTTCTTTCCGTTaGCATAGTTTGCTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMHCSFR*HSLLWL
Trigger: CAGCCAGAGCAAACTATGCAAACGGAAAGAACAATG...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGTGCATTCATCTCTCCTaGTGTAAGATACTGGCCACA +
Preference number: 5 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMCIHLS*CKILAT
Trigger: TGTGGCCAGTATCTTACACAAGGAGAGATGAATGCA...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTATTGTCATCTTCAGGGTaGTCACTCTCTGGGATGAGA +
Preference number: 5 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLLSSSG*SLSGMR
Trigger: TCTCATCCCAGAGAGTGACAACCCTGAAGATGACAA...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTATAAGGGACTCTTCCTaGGTAAGGCACCCACTGATA +
Preference number: 5 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSIRDSS*VRHPLI
Trigger: TATCAGTGGGTGCCTTACCAAGGAAGAGTCCCTTAT...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGCATCAGGAAGGTCCTTaGTGGAGTCAAATCCGCCAA +
Preference number: 5 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLHQEGP*WSQIRQ
Trigger: TTGGCGGATTTGACTCCACAAAGGACCTTCCTGATG...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGTCCATTCCTTATATCTaGTCGTCTTGTGCGCCTCTT +
Preference number: 5 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMSIPYI*SSCAPL
Trigger: AAGAGGCGCACAAGACGACAAGATATAAGGAATGGA...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp AGAAGCAATAAGTGTGCATTTGCATGCATTTACACTTTACAGTTGCTATCAGCGGTCCCTTTTCCACACTaGTTCACAGAACTCATCCAT +
Preference number: 5 (lower is better)
Translates to: RSNKCAFACIYTLQLLSAVPFPH*FTELIH
Trigger: ATGGATGAGTTCTGTGAACAAGTGTGGAAAAGGGAC...CGCTGATAGCAACTGTAAAGTGTAAATGCATGCAAATGCACACTTATTGCTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030714.9
CDS-3UTR CAA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTATCCATTCCTTATATCTaGTCGTCTTGTGCGCCTCTT +
Preference number: 5 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLSIPYI*SSCAPL
Trigger: AAGAGGCGCACAAGACGACAAGATATAAGGAATGGA...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp CATCTAAATTACTTAGTAAATGGGACATTCTTCTTCGTGCAAACTGTCCTCTCTACCTTTCTTGCTCTCTaGCATGTGCTTCCACTTGTT +
Preference number: 5 (lower is better)
Translates to: HLNYLVNGTFFFVQTVLSTFLAL*HVLPLV
Trigger: AACAAGTGGAAGCACATGCAAGAGAGCAAGAAAGGT...AGAGAGGACAGTTTGCACGAAGAAGAATGTCCCATTTACTAAGTAATTTAGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030714.9
CDS CCA 90 bp TACATCTGTTTTGATCATGATCGGGCGATTATTTATAGGAAACACTaGGTTGTACATGGCTGGATGACTTCTTGCAAAAGTTATGACATC +
Preference number: 5 (lower is better)
Translates to: YICFDHDRAIIYRKH*VVHGWMTSCKSYDI
Trigger: GATGTCATAACTTTTGCAAGAAGTCATCCAGCCATGTACAACCCAGTGTTTCCTATAAATAATCGCCCGATCATGATCAAAACAGATGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp TTAAATTGGTGGAACCCGGTTGAACTTCCCATCATTGTAAACATCCACATAATGGATCCCTTAAAGATGTaGCTTGATGTTGTGAACACT +
Preference number: 5 (lower is better)
Translates to: LNWWNPVELPIIVNIHIMDPLKM*LDVVNT
Trigger: AGTGTTCACAACATCAAGCAACATCTTTAAGGGATC...CATTATGTGGATGTTTACAATGATGGGAAGTTCAACCGGGTTCCACCAATTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGTCCATTCCTTATATCTaGTCGTCTTGTGCGCCTCTT +
Preference number: 5 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLSIPYI*SSCAPL
Trigger: AAGAGGCGCACAAGACGACAAGATATAAGGAATGGA...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp AGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTTGTGTTTTTATATCTCACGATAATTTCAGTCTaGGCACATTGTTCTTTCCGT +
Preference number: 5 (lower is better)
Translates to: RSMYSITLDDGWFVFLYLTIISV*AHCSFR
Trigger: ACGGAAAGAACAATGTGCCAAGACTGAAATTATCGT...GAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp AGATCAATGTACTCCATTACTCTGGATGATGGGTGGTTTGTGTTTTTATATCTCAGGACCTTGATGAAATaGGCACATTCTTTCAGGATA +
Preference number: 5 (lower is better)
Translates to: RSMYSITLDDGWFVFLYLRTLMK*AHSFRI
Trigger: TATCCTGAAAGAATGTGCCAATTTCATCAAGGTCCT...GAGATATAAAAACACAAACCACCCATCATCCAGAGTAATGGAGTACATTGATCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp CAGGTCTTACCTGTGATGATACATGCATATGCCAAAGTCCATCTAAATTACTTAGATCCCTTAAAGATGTaGCTTGATGTTGTGAACACT +
Preference number: 5 (lower is better)
Translates to: QVLPVMIHAYAKVHLNYLDPLKM*LDVVNT
Trigger: AGTGTTCACAACATCAAGCAACATCTTTAAGGGATC...TAAGTAATTTAGATGGACTTTGGCATATGCATGTATCATCACAGGTAAGACCTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGTACCTTAAGAAGAGTTaGCATGAATCCGTGTTCCAC +
Preference number: 5 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLYLKKS*HESVFH
Trigger: GTGGAACACGGATTCATGCAAACTCTTCTTAAGGTA...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS-3UTR CAA 90 bp ACTTCCCATCATTGTAAACATCCACATAATGCCATGAAATGTTCATGTGTATTGACGATAATTTCAGTCTaGGCACATTGTTCTTTCCGT +
Preference number: 5 (lower is better)
Translates to: TSHHCKHPHNAMKCSCVLTIISV*AHCSFR
Trigger: ACGGAAAGAACAATGTGCCAAGACTGAAATTATCGT...CAATACACATGAACATTTCATGGCATTATGTGGATGTTTACAATGATGGGAAGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS TCA 72 bp AGCCACCGGGAGTCATGCTGCTCCGTCCTGATGGGGTaGTGGTGCCCCAGTGTTCTGAAGATAGCGAAGTCC +
Preference number: 6 (lower is better)
Translates to: SHRESCCSVLMG*WCPSVLKIAKS
Trigger: GGACTTCGCTATCTTCAGAACACTGGGGCACCATCACCCCATCAGGACGGAGCAGCATGACTCCCGGTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS GCA 72 bp AAGGGTCCCGAGCGAGGCAGCATTCTGCACAGGCTTTaGCATAGATGTCACAGCGGTGTAGAGGAAGCTGTG +
Preference number: 6 (lower is better)
Translates to: KGPERGSILHRL*HRCHSGVEEAV
Trigger: CACAGCTTCCTCTACACCGCTGTGACATCTATGGCAAAGCCTGTGCAGAATGCTGCCTCGCTCGGGACCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS TCA 72 bp GAATCCGTGTTCCACAGCGTGACACAGGTAATTGCCTaGATCCTTCTTCTGCAGGCTACGGAGCAGGAGCCC +
Preference number: 6 (lower is better)
Translates to: ESVFHSVTQVIA*ILLLQATEQEP
Trigger: GGGCTCCTGCTCCGTAGCCTGCAGAAGAAGGATTCAGGCAATTACCTGTGTCACGCTGTGGAACACGGATTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CAA 72 bp TCTGGGATGAGATGGGCACTGATGAATCTAGGATCATaGAGCCACCGGGAGTCATGCTGCTCCGTCCTGATG +
Preference number: 6 (lower is better)
Translates to: SGMRWALMNLGS*SHRESCCSVLM
Trigger: CATCAGGACGGAGCAGCATGACTCCCGGTGGCTCAATGATCCTAGATTCATCAGTGCCCATCTCATCCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CAA 72 bp GGGACAAGTTCCTGGCCGTGGATAAGGGACTCTTCCTaGGTAAGGCACCCACTGATAGTTGGGACCATCTCT +
Preference number: 6 (lower is better)
Translates to: GTSSWPWIRDSS*VRHPLIVGTIS
Trigger: AGAGATGGTCCCAACTATCAGTGGGTGCCTTACCAAGGAAGAGTCCCTTATCCACGGCCAGGAACTTGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CCA 72 bp TCCGCCAAATGTTTTACTGGGACAAGTTCCTGGCCGTaGATAAGGGACTCTTCCTTGGTAAGGCACCCACTG +
Preference number: 6 (lower is better)
Translates to: SAKCFTGTSSWP*IRDSSLVRHPL
Trigger: CAGTGGGTGCCTTACCAAGGAAGAGTCCCTTATCCACGGCCAGGAACTTGTCCCAGTAAAACATTTGGCGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CAA 90 bp TGTTTTACTGGGACAAGTTCCTGGCCGTGGATAAGGGACTCTTCCTaGGTAAGGCACCCACTGATAGTTGGGACCATCTCTGTGAGCATA +
Preference number: 6 (lower is better)
Translates to: CFTGTSSWPWIRDSS*VRHPLIVGTISVSI
Trigger: TATGCTCACAGAGATGGTCCCAACTATCAGTGGGTGCCTTACCAAGGAAGAGTCCCTTATCCACGGCCAGGAACTTGTCCCAGTAAAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CCA 72 bp TTGTCATCTTCAGGGTTGTCACTCTCTGGGATGAGATaGGCACTGATGAATCTAGGATCATTGAGCCACCGG +
Preference number: 6 (lower is better)
Translates to: LSSSGLSLSGMR*ALMNLGSLSHR
Trigger: CCGGTGGCTCAATGATCCTAGATTCATCAGTGCCCATCTCATCCCAGAGAGTGACAACCCTGAAGATGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CCA 72 bp AAGGGACTCTTCCTTGGTAAGGCACCCACTGATAGTTaGGACCATCTCTGTGAGCATATGGACCAAGGAACA +
Preference number: 6 (lower is better)
Translates to: KGLFLGKAPTDS*DHLCEHMDQGT
Trigger: TGTTCCTTGGTCCATATGCTCACAGAGATGGTCCCAACTATCAGTGGGTGCCTTACCAAGGAAGAGTCCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CCA 72 bp CACCCACTGATAGTTGGGACCATCTCTGTGAGCATATaGACCAAGGAACACCCTTCTTACATCACTCATGCT +
Preference number: 6 (lower is better)
Translates to: HPLIVGTISVSI*TKEHPSYITHA
Trigger: AGCATGAGTGATGTAAGAAGGGTGTTCCTTGGTCCATATGCTCACAGAGATGGTCCCAACTATCAGTGGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS TCA 72 bp CTACGGAGCAGGAGCCCTTGTTCTGTCCTGATGATATaGTCACCCATTCTGATCTCCTCTTTTCGATCTTCA +
Preference number: 6 (lower is better)
Translates to: LRSRSPCSVLMI*SPILISSFRSS
Trigger: TGAAGATCGAAAAGAGGAGATCAGAATGGGTGATCATATCATCAGGACAGAACAAGGGCTCCTGCTCCGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CCA 72 bp ACTCACCGTCTATTAGAAGAGAGGCAGTCAGTAGTTTaGGATCATAAGGGCTCTTCCCACGACCGTTTTCAA +
Preference number: 6 (lower is better)
Translates to: THRLLEERQSVV*DHKGSSHDRFQ
Trigger: TTGAAAACGGTCGTGGGAAGAGCCCTTATGATCCCAAACTACTGACTGCCTCTCTTCTAATAGACGGTGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CCA 72 bp TTAATGAGCTGCATGAAGTCTCGGTACCAGACTTTCTaGCTGGGCGTCATGCTGCTCGACATTTCTTTTATC +
Preference number: 6 (lower is better)
Translates to: LMSCMKSRYQTF*LGVMLLDISFI
Trigger: GATAAAAGAAATGTCGAGCAGCATGACGCCCAGCCAGAAAGTCTGGTACCGAGACTTCATGCAGCTCATTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
CDS CAA 72 bp TGTGTCAATGACTTCCAGGGTTACCTTAAGAAGAGTTaGCATGAATCCGTGTTCCACAGCGTGACACAGGTA +
Preference number: 6 (lower is better)
Translates to: CVNDFQGYLKKS*HESVFHSVTQV
Trigger: TACCTGTGTCACGCTGTGGAACACGGATTCATGCAAACTCTTCTTAAGGTAACCCTGGAAGTCATTGACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS GCA 72 bp AATGTACAGCTGTTGCTGTTTAGTAGAAAGCTCCATTaGCGAAATAGTTGTTGGTTCCCGGAAGACGGTCAT +
Preference number: 6 (lower is better)
Translates to: NVQLLLFSRKLH*RNSCWFPEDGH
Trigger: ATGACCGTCTTCCGGGAACCAACAACTATTTCGGCAATGGAGCTTTCTACTAAACAGCAACAGCTGTACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS TCA 72 bp TCTCCTCTGAAATTGCCAATATACCAAGGCTCTCTGTaGCTTCGGACTGCATTCCAAGAATGTACTACTGTT +
Preference number: 6 (lower is better)
Translates to: SPLKLPIYQGSL*LRTAFQECTTV
Trigger: AACAGTAGTACATTCTTGGAATGCAGTCCGAAGTCACAGAGAGCCTTGGTATATTGGCAATTTCAGAGGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS GCA 72 bp TGGCACATTCTTTCAGGATATCTTTTCCAGCCCATTTaGATTCATCTCTCCTTGTGTAAGATACTGGCCACA +
Preference number: 6 (lower is better)
Translates to: WHILSGYLFQPI*IHLSLCKILAT
Trigger: TGTGGCCAGTATCTTACACAAGGAGAGATGAATGCAAATGGGCTGGAAAAGATATCCTGAAAGAATGTGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS GCA 72 bp ATTGCCAATATACCAAGGCTCTCTGTGACTTCGGACTaGATTCCAAGAATGTACTACTGTTTTCCACTCCAT +
Preference number: 6 (lower is better)
Translates to: IANIPRLSVTSD*IPRMYYCFPLH
Trigger: ATGGAGTGGAAAACAGTAGTACATTCTTGGAATGCAGTCCGAAGTCACAGAGAGCCTTGGTATATTGGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CAA 90 bp AACATCATACTGGCCATCTTCTGCATCCACTCGGTCTACAACAATTaGTGTGAACTGATAATTTACATCTGTTTTGATCATGATCGGGCG +
Preference number: 6 (lower is better)
Translates to: NIILAIFCIHSVYNN*CELIIYICFDHDRA
Trigger: CGCCCGATCATGATCAAAACAGATGTAAATTATCAGTTCACACAAATTGTTGTAGACCGAGTGGATGCAGAAGATGGCCAGTATGATGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS TCA 72 bp ATTCCAAGAATGTACTACTGTTTTCCACTCCATAGATaGTTCTCTCTTCAAGGCTGGGCCCATGATGATTAT +
Preference number: 6 (lower is better)
Translates to: IPRMYYCFPLHR*FSLQGWAHDDY
Trigger: ATAATCATCATGGGCCCAGCCTTGAAGAGAGAATCATCTATGGAGTGGAAAACAGTAGTACATTCTTGGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CCA 72 bp AAAATATACTTTGTCATCTTCAGGGTTGTCACTCTCTaGGATGAGATGGGCACTGATGAATCTAGGATCATT +
Preference number: 6 (lower is better)
Translates to: KIYFVIFRVVTL*DEMGTDESRII
Trigger: AATGATCCTAGATTCATCAGTGCCCATCTCATCCCAGAGAGTGACAACCCTGAAGATGACAAAGTATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CCA 72 bp TTTGATCATGATCGGGCGATTATTTATAGGAAACACTaGGTTGTACATGGCTGGATGACTTCTTGCAAAAGT +
Preference number: 6 (lower is better)
Translates to: FDHDRAIIYRKH*VVHGWMTSCKS
Trigger: ACTTTTGCAAGAAGTCATCCAGCCATGTACAACCCAGTGTTTCCTATAAATAATCGCCCGATCATGATCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CAA 72 bp CTGGCCATCTTCTGCATCCACTCGGTCTACAACAATTaGTGTGAACTGATAATTTACATCTGTTTTGATCAT +
Preference number: 6 (lower is better)
Translates to: LAIFCIHSVYNN*CELIIYICFDH
Trigger: ATGATCAAAACAGATGTAAATTATCAGTTCACACAAATTGTTGTAGACCGAGTGGATGCAGAAGATGGCCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10
CDS CCA 72 bp AGCCCATTTGCATTCATCTCTCCTTGTGTAAGATACTaGCCACACAATCTTTTGAAAATCTTTAATGTTCAC +
Preference number: 6 (lower is better)
Translates to: SPFAFISPCVRY*PHNLLKIFNVH
Trigger: GTGAACATTAAAGATTTTCAAAAGATTGTGTGGCCAGTATCTTACACAAGGAGAGATGAATGCAAATGGGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030714.9
ENSMUST00000095012.11
ENSMUST00000137798.10