Pregenerated sensors for SEM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042541

Ensembl transcript IDs: ENSMUST00000041111.10

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	CTGTCAGCTCTGTCCAAATGGCAAGTGGTCGTTTCCCTTTCAGTGTaGTTAATGTGGATACTGGAATTCTCTCTCTTAATGAAGAATGCA	+
Preference number: 1 (lower is better) Translates to: LSALSKWQVVVSLSV*LMWILEFSLLMKNA Trigger: TGCATTCTTCATTAAGAGAGAGAATTCCAGTATCCACATTAACCACACTGAAAGGGAAACGACCACTTGCCATTTGGACAGAGCTGACAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041111.10
3UTR-3UTR TCA 90 bp	TCATTTGTATTTCAGGACACCAACTATTTTGGTGTCTGTTTACTGACTTATGCACTTTGTTGTGTAAGATaGCTGTATGCAGTACTTGAG	+
Preference number: 2 (lower is better) Translates to: SFVFQDTNYFGVCLLTYALCCVR*LYAVLE Trigger: CTCAAGTACTGCATACAGTCATCTTACACAACAAAG...TGCATAAGTCAGTAAACAGACACCAAAATAGTTGGTGTCCTGAAATACAAATGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041111.10
3UTR-3UTR CCA 90 bp	TCATTTGTATTTCAGGACACCAACTATTTTGGTGTCTGTTTACTGACTTATGCATCAGTGTGGTTAATGTaGATACTGGAATTCTCTCTC	+
Preference number: 2 (lower is better) Translates to: SFVFQDTNYFGVCLLTYASVWLM*ILEFSL Trigger: GAGAGAGAATTCCAGTATCCACATTAACCACACTGA...TGCATAAGTCAGTAAACAGACACCAAAATAGTTGGTGTCCTGAAATACAAATGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041111.10
3UTR CCA 72 bp	AGTTCAAAGTGGTACAAACTGTCAGCTCTGTCCAAATaGCAAGTGGTCGTTTCCCTTTCAGTGTGGTTAATG	+
Preference number: 3 (lower is better) Translates to: SSKWYKLSALSK*QVVVSLSVWLM Trigger: CATTAACCACACTGAAAGGGAAACGACCACTTGCCATTTGGACAGAGCTGACAGTTTGTACCACTTTGAACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041111.10
3UTR CCA 72 bp	CTGTCCAAATGGCAAGTGGTCGTTTCCCTTTCAGTGTaGTTAATGTGGATACTGGAATTCTCTCTCTTAATG	+
Preference number: 3 (lower is better) Translates to: LSKWQVVVSLSV*LMWILEFSLLM Trigger: CATTAAGAGAGAGAATTCCAGTATCCACATTAACCACACTGAAAGGGAAACGACCACTTGCCATTTGGACAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041111.10
3UTR-3UTR CAA 90 bp	CTTATGCAAGATAAAACTTATTCAGGGATAGAATACAGAAGAAAGCTAAGGCTGGACTGTATGCAGTACTaGAGAATATACATACTGCTA	+
Preference number: 3 (lower is better) Translates to: LMQDKTYSGIEYRRKLRLDCMQY*RIYILL Trigger: TAGCAGTATGTATATTCTCAAGTACTGCATACAGTC...CAGCCTTAGCTTTCTTCTGTATTCTATCCCTGAATAAGTTTTATCTTGCATAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041111.10
CDS-3UTR CCA 90 bp	AGCTCTGTCCAAATGGCAAGTGGTCGTTTCCCTTTCAGTGTGGTTAATGTGGATAGCTCAGCACGTAACTaGTTAGAGAAGTCATCTTCT	+
Preference number: 4 (lower is better) Translates to: SSVQMASGRFPFSVVNVDSSARN*LEKSSS Trigger: AGAAGATGACTTCTCTAACCAGTTACGTGCTGAGCT...ATCCACATTAACCACACTGAAAGGGAAACGACCACTTGCCATTTGGACAGAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041111.10

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