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Pregenerated sensors for SELENOW (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041571

Ensembl transcript IDs: ENSMUST00000044355.11

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCACGGGTAGATTCTGGGGAGGCACCCACAGCCAGAATCCATCTCTaGCCTGACTTGGTGGCCGCAGGAACATCGAGGAAAGACCACAGG +
Preference number: 1 (lower is better)
Translates to: ARVDSGEAPTARIHL*PDLVAAGTSRKDHR
Trigger: CCTGTGGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGGCTGTGGGTGCCTCCCCAGAATCTACCCGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11
3UTR CCA 90 bp ATTCTGGGGAGGCACCCACAGCCAGAATCCATCTCTGGCCTGACTTaGTGGCCGCAGGAACATCGAGGAAAGACCACAGGTCTAAGACAT +
Preference number: 1 (lower is better)
Translates to: ILGRHPQPESISGLT*WPQEHRGKTTGLRH
Trigger: ATGTCTTAGACCTGTGGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGGCTGTGGGTGCCTCCCCAGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11
3UTR-3UTR TCA 90 bp CCAGAATCCATCTCTGGCCTGACTTGGTGGCCGCAGGAACATCGAGGAAAGACCCAGTCCTTCCTGTCATaGAGCGGCTGCCAAGGAAGG +
Preference number: 2 (lower is better)
Translates to: PESISGLTWWPQEHRGKTQSFLS*SGCQGR
Trigger: CCTTCCTTGGCAGCCGCTTCATGACAGGAAGGACTG...GGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11
3UTR CAA 90 bp GATTCTGGGGAGGCACCCACAGCCAGAATCCATCTCTGGCCTGACTaGGTGGCCGCAGGAACATCGAGGAAAGACCACAGGTCTAAGACA +
Preference number: 2 (lower is better)
Translates to: DSGEAPTARIHLWPD*VAAGTSRKDHRSKT
Trigger: TGTCTTAGACCTGTGGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGGCTGTGGGTGCCTCCCCAGAATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11
3UTR TCA 72 bp TGGGGAGGCACCCACAGCCAGAATCCATCTCTGGCCTaGCTTGGTGGCCGCAGGAACATCGAGGAAAGACCA +
Preference number: 3 (lower is better)
Translates to: WGGTHSQNPSLA*LGGRRNIEERP
Trigger: TGGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGGCTGTGGGTGCCTCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11
3UTR CAA 72 bp GAGGCACCCACAGCCAGAATCCATCTCTGGCCTGACTaGGTGGCCGCAGGAACATCGAGGAAAGACCACAGG +
Preference number: 4 (lower is better)
Translates to: EAPTARIHLWPD*VAAGTSRKDHR
Trigger: CCTGTGGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGGCTGTGGGTGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11
CDS-3UTR TCA 90 bp AAAGCAAAGCAGGAGGGTGGGTGGGAAACAATGGGGGAATTCAGAGAGAGAGGTGAGCCAAGGCAGCTTTaGTGGCGGTCACCAGTTTCC +
Preference number: 4 (lower is better)
Translates to: KAKQEGGWETMGEFRERGEPRQL*WRSPVS
Trigger: GGAAACTGGTGACCGCCATCAAAGCTGCCTTGGCTC...ACCTCTCTCTCTGAATTCCCCCATTGTTTCCCACCCACCCTCCTGCTTTGCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11
CDS-3UTR CCA 90 bp AAAGCAAAGCAGGAGGGTGGGTGGGAAACAATGGGGGAATTCAGAGAGAGAGGTCCTCTCTTCTTGGAGTaGACCAACTTCCCGGCTACT +
Preference number: 4 (lower is better)
Translates to: KAKQEGGWETMGEFRERGPLFLE*TNFPAT
Trigger: AGTAGCCGGGAAGTTGGTCCACTCCAAGAAGAGAGG...ACCTCTCTCTCTGAATTCCCCCATTGTTTCCCACCCACCCTCCTGCTTTGCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11
CDS-3UTR GCA 90 bp AAGGGAAAGCAAAGCAGGAGGGTGGGTGGGAAACAATGGGGGAATTCAGAGAGACCAGTTTCCGGAACTTaGTCTCTGTATCCACATAGC +
Preference number: 4 (lower is better)
Translates to: KGKQSRRVGGKQWGNSERPVSGT*SLYPHS
Trigger: GCTATGTGGATACAGAGAGCAAGTTCCGGAAACTGG...TCTCTCTGAATTCCCCCATTGTTTCCCACCCACCCTCCTGCTTTGCTTTCCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11
CDS-3UTR CAA 90 bp CCAGAATCCATCTCTGGCCTGACTTGGTGGCCGCAGGAACATCGAGGAAAGACCCCATCACCTCTCTTCTaGGAGTGGACCAACTTCCCG +
Preference number: 5 (lower is better)
Translates to: PESISGLTWWPQEHRGKTPSPLF*EWTNFP
Trigger: CGGGAAGTTGGTCCACTCCAAGAAGAGAGGTGATGG...GGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11
CDS-3UTR CAA 90 bp GTGGCCGCAGGAACATCGAGGAAAGACCACAGGTCTAAGACATTTCAGTCCTTCTGTTCTAGCTTCTCCTaGAGCTGGAGGTACTTGGGC +
Preference number: 5 (lower is better)
Translates to: VAAGTSRKDHRSKTFQSFCSSFS*SWRYLG
Trigger: GCCCAAGTACCTCCAGCTCAAGGAGAAGCTAGAACA...GAAGGACTGAAATGTCTTAGACCTGTGGTCTTTCCTCGATGTTCCTGCGGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044355.11