Pregenerated sensors for SELENOW (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041571Ensembl transcript IDs: ENSMUST00000044355.11
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | GCACGGGTAGATTCTGGGGAGGCACCCACAGCCAGAATCCATCTCTaGCCTGACTTGGTGGCCGCAGGAACATCGAGGAAAGACCACAGG | + |
Preference number: 1 (lower is better) Translates to: ARVDSGEAPTARIHL*PDLVAAGTSRKDHR Trigger: CCTGTGGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGGCTGTGGGTGCCTCCCCAGAATCTACCCGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |
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3UTR CCA 90 bp | ATTCTGGGGAGGCACCCACAGCCAGAATCCATCTCTGGCCTGACTTaGTGGCCGCAGGAACATCGAGGAAAGACCACAGGTCTAAGACAT | + |
Preference number: 1 (lower is better) Translates to: ILGRHPQPESISGLT*WPQEHRGKTTGLRH Trigger: ATGTCTTAGACCTGTGGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGGCTGTGGGTGCCTCCCCAGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |
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3UTR-3UTR TCA 90 bp | CCAGAATCCATCTCTGGCCTGACTTGGTGGCCGCAGGAACATCGAGGAAAGACCCAGTCCTTCCTGTCATaGAGCGGCTGCCAAGGAAGG | + |
Preference number: 2 (lower is better) Translates to: PESISGLTWWPQEHRGKTQSFLS*SGCQGR Trigger: CCTTCCTTGGCAGCCGCTTCATGACAGGAAGGACTG...GGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |
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3UTR CAA 90 bp | GATTCTGGGGAGGCACCCACAGCCAGAATCCATCTCTGGCCTGACTaGGTGGCCGCAGGAACATCGAGGAAAGACCACAGGTCTAAGACA | + |
Preference number: 2 (lower is better) Translates to: DSGEAPTARIHLWPD*VAAGTSRKDHRSKT Trigger: TGTCTTAGACCTGTGGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGGCTGTGGGTGCCTCCCCAGAATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |
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3UTR TCA 72 bp | TGGGGAGGCACCCACAGCCAGAATCCATCTCTGGCCTaGCTTGGTGGCCGCAGGAACATCGAGGAAAGACCA | + |
Preference number: 3 (lower is better) Translates to: WGGTHSQNPSLA*LGGRRNIEERP Trigger: TGGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGGCTGTGGGTGCCTCCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |
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3UTR CAA 72 bp | GAGGCACCCACAGCCAGAATCCATCTCTGGCCTGACTaGGTGGCCGCAGGAACATCGAGGAAAGACCACAGG | + |
Preference number: 4 (lower is better) Translates to: EAPTARIHLWPD*VAAGTSRKDHR Trigger: CCTGTGGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGGCTGTGGGTGCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |
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CDS-3UTR TCA 90 bp | AAAGCAAAGCAGGAGGGTGGGTGGGAAACAATGGGGGAATTCAGAGAGAGAGGTGAGCCAAGGCAGCTTTaGTGGCGGTCACCAGTTTCC | + |
Preference number: 4 (lower is better) Translates to: KAKQEGGWETMGEFRERGEPRQL*WRSPVS Trigger: GGAAACTGGTGACCGCCATCAAAGCTGCCTTGGCTC...ACCTCTCTCTCTGAATTCCCCCATTGTTTCCCACCCACCCTCCTGCTTTGCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |
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CDS-3UTR CCA 90 bp | AAAGCAAAGCAGGAGGGTGGGTGGGAAACAATGGGGGAATTCAGAGAGAGAGGTCCTCTCTTCTTGGAGTaGACCAACTTCCCGGCTACT | + |
Preference number: 4 (lower is better) Translates to: KAKQEGGWETMGEFRERGPLFLE*TNFPAT Trigger: AGTAGCCGGGAAGTTGGTCCACTCCAAGAAGAGAGG...ACCTCTCTCTCTGAATTCCCCCATTGTTTCCCACCCACCCTCCTGCTTTGCTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |
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CDS-3UTR GCA 90 bp | AAGGGAAAGCAAAGCAGGAGGGTGGGTGGGAAACAATGGGGGAATTCAGAGAGACCAGTTTCCGGAACTTaGTCTCTGTATCCACATAGC | + |
Preference number: 4 (lower is better) Translates to: KGKQSRRVGGKQWGNSERPVSGT*SLYPHS Trigger: GCTATGTGGATACAGAGAGCAAGTTCCGGAAACTGG...TCTCTCTGAATTCCCCCATTGTTTCCCACCCACCCTCCTGCTTTGCTTTCCCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |
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CDS-3UTR CAA 90 bp | CCAGAATCCATCTCTGGCCTGACTTGGTGGCCGCAGGAACATCGAGGAAAGACCCCATCACCTCTCTTCTaGGAGTGGACCAACTTCCCG | + |
Preference number: 5 (lower is better) Translates to: PESISGLTWWPQEHRGKTPSPLF*EWTNFP Trigger: CGGGAAGTTGGTCCACTCCAAGAAGAGAGGTGATGG...GGTCTTTCCTCGATGTTCCTGCGGCCACCAAGTCAGGCCAGAGATGGATTCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |
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CDS-3UTR CAA 90 bp | GTGGCCGCAGGAACATCGAGGAAAGACCACAGGTCTAAGACATTTCAGTCCTTCTGTTCTAGCTTCTCCTaGAGCTGGAGGTACTTGGGC | + |
Preference number: 5 (lower is better) Translates to: VAAGTSRKDHRSKTFQSFCSSFS*SWRYLG Trigger: GCCCAAGTACCTCCAGCTCAAGGAGAAGCTAGAACA...GAAGGACTGAAATGTCTTAGACCTGTGGTCTTTCCTCGATGTTCCTGCGGCCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044355.11 |