Pregenerated sensors for SELENOV (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046750Ensembl transcript IDs: ENSMUST00000056589.15, ENSMUST00000156408.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCTTGCATaGTTCCTCCTGGCCCTCCACAGCACCTCACTCATGTCCCCTCCG | + |
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Preference number: 1 (lower is better) Translates to: WQHFSPSHHPAEALA*FLLALHSTSLMSPP Trigger: CGGAGGGGACATGAGTGAGGTGCTGTGGAGGGCCAGGAGGAAGCATGCAAGAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| 3UTR TCA 90 bp | CAGGACTGGGCCTACGGCAGCAGATGGAGGAGGAAGTCTTGGAGATaGCAGTCACGTCAGGATCCTAAACGTTACTTTACACAGGTCAAT | + |
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Preference number: 1 (lower is better) Translates to: QDWAYGSRWRRKSWR*QSRQDPKRYFTQVN Trigger: ATTGACCTGTGTAAAGTAACGTTTAGGATCCTGACGTGACTGTCATCTCCAAGACTTCCTCCTCCATCTGCTGCCGTAGGCCCAGTCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156408.2 |
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| 3UTR-3UTR GCA 90 bp | TCCAGGACTGGGCCTACGGCAGCAGATGGAGGAGGAAGTCTTGGAGATGACAGTATCTCCAGCATTGCATaGTTCCTCCTGGCCCTCCAC | + |
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Preference number: 2 (lower is better) Translates to: SRTGPTAADGGGSLGDDSISSIA*FLLALH Trigger: GTGGAGGGCCAGGAGGAAGCATGCAATGCTGGAGAT...ACTGTCATCTCCAAGACTTCCTCCTCCATCTGCTGCCGTAGGCCCAGTCCTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156408.2 |
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| 3UTR CCA 72 bp | CTCATCATCCTGCTGAGGCTCTTGCATGCTTCCTCCTaGCCCTCCACAGCACCTCACTCATGTCCCCTCCGT | + |
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Preference number: 3 (lower is better) Translates to: LIILLRLLHASS*PSTAPHSCPLR Trigger: ACGGAGGGGACATGAGTGAGGTGCTGTGGAGGGCCAGGAGGAAGCATGCAAGAGCCTCAGCAGGATGATGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| 3UTR CCA 72 bp | CCCAAGCCCCAGCCACCATCAGAAAAGGACCTGGTTTaGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: PKPQPPSEKDLV*QHFSPSHHPAE Trigger: CTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTTCTGATGGTGGCTGGGGCTTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| 3UTR GCA 72 bp | CCTAAACGTTACTTTACACAGGTCAATCTCCAGCATTaGATGCTTCCTCCTGGCCCTCCACAGCACCTCACT | + |
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Preference number: 3 (lower is better) Translates to: PKRYFTQVNLQH*MLPPGPPQHLT Trigger: AGTGAGGTGCTGTGGAGGGCCAGGAGGAAGCATGCAATGCTGGAGATTGACCTGTGTAAAGTAACGTTTAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156408.2 |
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| 3UTR TCA 72 bp | GCCTACGGCAGCAGATGGAGGAGGAAGTCTTGGAGATaGCAGTCACGTCAGGATCCTAAACGTTACTTTACA | + |
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Preference number: 3 (lower is better) Translates to: AYGSRWRRKSWR*QSRQDPKRYFT Trigger: TGTAAAGTAACGTTTAGGATCCTGACGTGACTGTCATCTCCAAGACTTCCTCCTCCATCTGCTGCCGTAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156408.2 |
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| CDS-3UTR TCA 90 bp | GGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCTTGCATGCTTCCTCCGGTGTTTGCCCGGACTaGGGAGGGAGCGGGGACCCG | + |
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Preference number: 4 (lower is better) Translates to: GSISALLIILLRLLHASSGVCPD*GGSGDP Trigger: CGGGTCCCCGCTCCCTCCTCAGTCCGGGCAAACACC...GGAGGAAGCATGCAAGAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | AAAAGGACCTGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCGGTTGGGGCAGGGACTaGGGCTGGAGTTGGGAACCG | + |
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Preference number: 4 (lower is better) Translates to: KRTWFGSISALLIILLRLGWGRD*GWSWEP Trigger: CGGTTCCCAACTCCAGCCCCAGTCCCTGCCCCAACC...GAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | AAAAGGACCTGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCAAAGGGGCTGTGCCGTaGGCGAGGCCAAGCTCGGGA | + |
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Preference number: 4 (lower is better) Translates to: KRTWFGSISALLIILLRLKGAVP*ARPSSG Trigger: TCCCGAGCTTGGCCTCGCCCACGGCACAGCCCCTTT...GAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | AAAAGGACCTGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCCGAGGGAGTGAGCACTaGAAGGGGCCCCTGGATGGC | + |
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Preference number: 4 (lower is better) Translates to: KRTWFGSISALLIILLRLRGSEH*KGPLDG Trigger: GCCATCCAGGGGCCCCTTCCAGTGCTCACTCCCTCG...GAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | TCAGAAAAGGACCTGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGACAGGGTTAGGGACTTaGGCAGGAGCCCGGACCCGG | + |
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Preference number: 4 (lower is better) Translates to: SEKDLVWQHFSPSHHPAETGLGT*AGARTR Trigger: CCGGGTCCGGGCTCCTGCCCAAGTCCCTAACCCTGT...CTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTTCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | CAGAAAAGGACCTGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGAGGCGGTGTCCGGTATaGAGCCTTGTGTCTTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: QKRTWFGSISALLIILLRRRCPV*SLVSWR Trigger: CCTCCAAGACACAAGGCTCCATACCGGACACCGCCT...CCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | CATCCTGCTGAGGCTCTTGCATGCTTCCTCCTGGCCCTCCACAGCACCTCACTCCCTTTCTTCTTGGAATaGATCAGCTTCCCATCCACA | + |
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Preference number: 4 (lower is better) Translates to: HPAEALACFLLALHSTSLPFFLE*ISFPST Trigger: TGTGGATGGGAAGCTGATCCATTCCAAGAAGAAAGG...GAGTGAGGTGCTGTGGAGGGCCAGGAGGAAGCATGCAAGAGCCTCAGCAGGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | AGGTCAATCTCCAGCATTGCATGCTTCCTCCTGGCCCTCCACAGCACCTCACTCCCTTTCTTCTTGGAATaGATCAGCTTCCCATCCACA | + |
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Preference number: 4 (lower is better) Translates to: RSISSIACFLLALHSTSLPFFLE*ISFPST Trigger: TGTGGATGGGAAGCTGATCCATTCCAAGAAGAAAGG...GAGTGAGGTGCTGTGGAGGGCCAGGAGGAAGCATGCAATGCTGGAGATTGACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156408.2 |
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| CDS-3UTR CCA 90 bp | CAGAAAAGGACCTGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGAGTTGGGAACCGGATTaGAACAGGGTTAGGGACTTG | + |
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Preference number: 4 (lower is better) Translates to: QKRTWFGSISALLIILLRSWEPD*NRVRDL Trigger: CAAGTCCCTAACCCTGTTCCAATCCGGTTCCCAACT...CCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | GGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCTTGCATGCTTCCTCCAAACTCCAGAAGGTTTaGGAATTGATGCTCCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: GSISALLIILLRLLHASSKLQKV*ELMLQG Trigger: ACCCTGGAGCATCAATTCCCAAACCTTCTGGAGTTT...GGAGGAAGCATGCAAGAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | GTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCTTGCATGCTTCAACTCCCCTGTAACCTaGGTAGCTCTTTCCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: VWQHFSPSHHPAEALACFNSPVT*VALSSS Trigger: TGAGGAGGAAAGAGCTACCCAGGTTACAGGGGAGTT...GAAGCATGCAAGAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR TCA 90 bp | TCAGAAAAGGACCTGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGAGAAGGTTTGGGAATTaGTGCTCCAGGGTCCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: SEKDLVWQHFSPSHHPAERRFGN*CSRVLF Trigger: GAAAAGGACCCTGGAGCATCAATTCCCAAACCTTCT...CTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTTCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | TGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCTTGCATGCTCATCACCTTTCTTCTTaGAATGGATCAGCTTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: WFGSISALLIILLRLLHAHHLSS*NGSASH Trigger: ATGGGAAGCTGATCCATTCCAAGAAGAAAGGTGATG...AGCATGCAAGAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CCA 90 bp | GATCCTAAACGTTACTTTACACAGGTCAATCTCCAGCATTGCATGCTTCCTCCTCATCACCTTTCTTCTTaGAATGGATCAGCTTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: DPKRYFTQVNLQHCMLPPHHLSS*NGSASH Trigger: ATGGGAAGCTGATCCATTCCAAGAAGAAAGGTGATG...AGGAGGAAGCATGCAATGCTGGAGATTGACCTGTGTAAAGTAACGTTTAGGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156408.2 |
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| CDS CCA 90 bp | AGTTCGGACTGGAGTCGAGTTGTGCGCTGGGTTCGGGGCCCTGACTaGGGTCGCGGTTCGGATGGGAGCGGGTGTCCGGGCCGGGGTGTT | + |
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Preference number: 5 (lower is better) Translates to: SSDWSRVVRWVRGPD*GRGSDGSGCPGRGV Trigger: AACACCCCGGCCCGGACACCCGCTCCCATCCGAACCGCGACCCCAGTCAGGGCCCCGAACCCAGCGCACAACTCGACTCCAGTCCGAACT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS GCA 90 bp | GCAGGAGCCCGGACCCGGATGGAAGTTCGGACTGGAGTCGAGTTGTaGGCTGGGTTCGGGGCCCTGACTGGGGTCGCGGTTCGGATGGGA | + |
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Preference number: 5 (lower is better) Translates to: AGARTRMEVRTGVEL*AGFGALTGVAVRMG Trigger: TCCCATCCGAACCGCGACCCCAGTCAGGGCCCCGAACCCAGCGCACAACTCGACTCCAGTCCGAACTTCCATCCGGGTCCGGGCTCCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CCA 90 bp | GTTAGGGACTTGGGCAGGAGCCCGGACCCGGATGGAAGTTCGGACTaGAGTCGAGTTGTGCGCTGGGTTCGGGGCCCTGACTGGGGTCGC | + |
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Preference number: 5 (lower is better) Translates to: VRDLGRSPDPDGSSD*SRVVRWVRGPDWGR Trigger: GCGACCCCAGTCAGGGCCCCGAACCCAGCGCACAACTCGACTCCAGTCCGAACTTCCATCCGGGTCCGGGCTCCTGCCCAAGTCCCTAAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS TCA 90 bp | AGGCGGTGTCCGGTATGGAGCCTTGTGTCTTGGAGGACGAGGGAGTaGGCACTGGAAGGGGCCCCTGGATGGCCTCCGCTAGGCTGTGGA | + |
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Preference number: 5 (lower is better) Translates to: RRCPVWSLVSWRTRE*ALEGAPGWPPLGCG Trigger: TCCACAGCCTAGCGGAGGCCATCCAGGGGCCCCTTCCAGTGCTCACTCCCTCGTCCTCCAAGACACAAGGCTCCATACCGGACACCGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CCA 90 bp | ACTGGGGCTGGAGTTGGGAACCGGATTGGAACAGGGTTAGGGACTTaGGCAGGAGCCCGGACCCGGATGGAAGTTCGGACTGGAGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: TGAGVGNRIGTGLGT*AGARTRMEVRTGVE Trigger: CTCGACTCCAGTCCGAACTTCCATCCGGGTCCGGGCTCCTGCCCAAGTCCCTAACCCTGTTCCAATCCGGTTCCCAACTCCAGCCCCAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CAA 90 bp | TCAGAAAAGGACCTGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGTCCGGGCCGGGGTGTTaGCCCGGACTGAGGAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: SEKDLVWQHFSPSHHPAESGPGC*PGLRRE Trigger: CTCCCTCCTCAGTCCGGGCAAACACCCCGGCCCGGA...CTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTTCTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CAA 90 bp | AAAAGGACCTGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCAACAGGGTTAGGGACTaGGGCAGGAGCCCGGACCCG | + |
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Preference number: 5 (lower is better) Translates to: KRTWFGSISALLIILLRLNRVRD*GRSPDP Trigger: CGGGTCCGGGCTCCTGCCCAAGTCCCTAACCCTGTT...GAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CAA 90 bp | TTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCTTGCATGCTTCCGGACTGGGGCTGGAGTaGGGAACCGGATTGGAACAG | + |
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Preference number: 5 (lower is better) Translates to: FGSISALLIILLRLLHASGLGLE*GTGLEQ Trigger: CTGTTCCAATCCGGTTCCCAACTCCAGCCCCAGTCC...GGAAGCATGCAAGAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CAA 90 bp | GTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCTTGCATGCTTCGTCCGGTATGGAGCCTaGTGTCTTGGAGGACGAGGG | + |
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Preference number: 5 (lower is better) Translates to: VWQHFSPSHHPAEALACFVRYGA*CLGGRG Trigger: CCCTCGTCCTCCAAGACACAAGGCTCCATACCGGAC...GAAGCATGCAAGAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CAA 90 bp | GTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCTTGCATGCTTCATGGAGCCTTGTGTCTaGGAGGACGAGGGAGTGAGC | + |
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Preference number: 5 (lower is better) Translates to: VWQHFSPSHHPAEALACFMEPCV*EDEGVS Trigger: GCTCACTCCCTCGTCCTCCAAGACACAAGGCTCCAT...GAAGCATGCAAGAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CAA 90 bp | CATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCTTGCATGCTTCCTCCTGGCCCAAACTCCAGAAGGTTaGGGAATTGATGCTCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: HFSPSHHPAEALACFLLAQTPEG*GIDAPG Trigger: CCCTGGAGCATCAATTCCCAAACCTTCTGGAGTTTG...GGCCAGGAGGAAGCATGCAAGAGCCTCAGCAGGATGATGAGAAGGGCTGAAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CAA 90 bp | AGGACTGGGCCTACGGCAGCAGATGGAGGAGGAAGTCTTGGAGATGACAGTCACCCATCACCTTTCTTCTaGGAATGGATCAGCTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: RTGPTAADGGGSLGDDSHPSPFF*EWISFP Trigger: TGGGAAGCTGATCCATTCCAAGAAGAAAGGTGATGG...GTGACTGTCATCTCCAAGACTTCCTCCTCCATCTGCTGCCGTAGGCCCAGTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156408.2 |
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| CDS-3UTR CAA 90 bp | TGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCTTGCATGCTCAGAAGGTTTGGGAATaGATGCTCCAGGGTCCTTTT | + |
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Preference number: 5 (lower is better) Translates to: WFGSISALLIILLRLLHAQKVWE*MLQGPF Trigger: AAAAGGACCCTGGAGCATCAATTCCCAAACCTTCTG...AGCATGCAAGAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS-3UTR CAA 90 bp | AAAAGGACCTGGTTTGGCAGCATTTCAGCCCTTCTCATCATCCTGCTGAGGCTCCCATCACCTTTCTTCTaGGAATGGATCAGCTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: KRTWFGSISALLIILLRLPSPFF*EWISFP Trigger: TGGGAAGCTGATCCATTCCAAGAAGAAAGGTGATGG...GAGCCTCAGCAGGATGATGAGAAGGGCTGAAATGCTGCCAAACCAGGTCCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CAA 72 bp | CGGTTCGGATGGGAGCGGGTGTCCGGGCCGGGGTGTTaGCCCGGACTGAGGAGGGAGCGGGGACCCGCGCCT | + |
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Preference number: 6 (lower is better) Translates to: RFGWERVSGPGC*PGLRRERGPAP Trigger: AGGCGCGGGTCCCCGCTCCCTCCTCAGTCCGGGCAAACACCCCGGCCCGGACACCCGCTCCCATCCGAACCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS TCA 72 bp | GGGAGCGGGTGTCCGGGCCGGGGTGTTTGCCCGGACTaGGGAGGGAGCGGGGACCCGCGCCTTGTTATTCAT | + |
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Preference number: 6 (lower is better) Translates to: GSGCPGRGVCPD*GGSGDPRLVIH Trigger: ATGAATAACAAGGCGCGGGTCCCCGCTCCCTCCTCAGTCCGGGCAAACACCCCGGCCCGGACACCCGCTCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS GCA 72 bp | GCCCGGACTGGTGCTGGAGTCCGCACCGGTGCTGCATaGCGGACTGGAGCTGGAGTTGGGGCTGGGGTTAGG | + |
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Preference number: 6 (lower is better) Translates to: ARTGAGVRTGAA*RTGAGVGAGVR Trigger: CCTAACCCCAGCCCCAACTCCAGCTCCAGTCCGGCATGCAGCACCGGTGCGGACTCCAGCACCAGTCCGGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS GCA 72 bp | ATTCGGGGCCCGGACTGGTGCTGGAGTCCGCACCGGTaGTGCATGCCGGACTGGAGCTGGAGTTGGGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: IRGPDWCWSPHR*CMPDWSWSWGW Trigger: CCAGCCCCAACTCCAGCTCCAGTCCGGCATGCAGCACCGGTGCGGACTCCAGCACCAGTCCGGGCCCCGAAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CAA 72 bp | GCCCGGACCCGGATGGAAGTTCGGACTGGAGTCGAGTaGTGCGCTGGGTTCGGGGCCCTGACTGGGGTCGCG | + |
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Preference number: 6 (lower is better) Translates to: ARTRMEVRTGVE*CAGFGALTGVA Trigger: CGCGACCCCAGTCAGGGCCCCGAACCCAGCGCACAACTCGACTCCAGTCCGAACTTCCATCCGGGTCCGGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CAA 90 bp | TGGGCAGGAGCCCGGACCCGGATGGAAGTTCGGACTGGAGTCGAGTaGTGCGCTGGGTTCGGGGCCCTGACTGGGGTCGCGGTTCGGATG | + |
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Preference number: 6 (lower is better) Translates to: WAGARTRMEVRTGVE*CAGFGALTGVAVRM Trigger: CATCCGAACCGCGACCCCAGTCAGGGCCCCGAACCCAGCGCACAACTCGACTCCAGTCCGAACTTCCATCCGGGTCCGGGCTCCTGCCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS GCA 72 bp | CGGACCCGGATGGAAGTTCGGACTGGAGTCGAGTTGTaGGCTGGGTTCGGGGCCCTGACTGGGGTCGCGGTT | + |
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Preference number: 6 (lower is better) Translates to: RTRMEVRTGVEL*AGFGALTGVAV Trigger: AACCGCGACCCCAGTCAGGGCCCCGAACCCAGCGCACAACTCGACTCCAGTCCGAACTTCCATCCGGGTCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CCA 72 bp | TTGGGCAGGAGCCCGGACCCGGATGGAAGTTCGGACTaGAGTCGAGTTGTGCGCTGGGTTCGGGGCCCTGAC | + |
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Preference number: 6 (lower is better) Translates to: LGRSPDPDGSSD*SRVVRWVRGPD Trigger: GTCAGGGCCCCGAACCCAGCGCACAACTCGACTCCAGTCCGAACTTCCATCCGGGTCCGGGCTCCTGCCCAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CCA 72 bp | CCGGATGGAAGTTCGGACTGGAGTCGAGTTGTGCGCTaGGTTCGGGGCCCTGACTGGGGTCGCGGTTCGGAT | + |
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Preference number: 6 (lower is better) Translates to: PDGSSDWSRVVR*VRGPDWGRGSD Trigger: ATCCGAACCGCGACCCCAGTCAGGGCCCCGAACCCAGCGCACAACTCGACTCCAGTCCGAACTTCCATCCGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS TCA 72 bp | CCGGTATGGAGCCTTGTGTCTTGGAGGACGAGGGAGTaGGCACTGGAAGGGGCCCCTGGATGGCCTCCGCTA | + |
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Preference number: 6 (lower is better) Translates to: PVWSLVSWRTRE*ALEGAPGWPPL Trigger: TAGCGGAGGCCATCCAGGGGCCCCTTCCAGTGCTCACTCCCTCGTCCTCCAAGACACAAGGCTCCATACCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CCA 72 bp | TTGGAGGACGAGGGAGTGAGCACTGGAAGGGGCCCCTaGATGGCCTCCGCTAGGCTGTGGATCGAGGGTTTC | + |
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Preference number: 6 (lower is better) Translates to: LEDEGVSTGRGP*MASARLWIEGF Trigger: GAAACCCTCGATCCACAGCCTAGCGGAGGCCATCCAGGGGCCCCTTCCAGTGCTCACTCCCTCGTCCTCCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CAA 72 bp | ATGGGAGAGGCGGTGTCCGGTATGGAGCCTTGTGTCTaGGAGGACGAGGGAGTGAGCACTGGAAGGGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: MGEAVSGMEPCV*EDEGVSTGRGP Trigger: GGGGCCCCTTCCAGTGCTCACTCCCTCGTCCTCCAAGACACAAGGCTCCATACCGGACACCGCCTCTCCCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CAA 90 bp | GACTGGGGCTGGAGTTGGGAACCGGATTGGAACAGGGTTAGGGACTaGGGCAGGAGCCCGGACCCGGATGGAAGTTCGGACTGGAGTCGA | + |
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Preference number: 6 (lower is better) Translates to: DWGWSWEPDWNRVRD*GRSPDPDGSSDWSR Trigger: TCGACTCCAGTCCGAACTTCCATCCGGGTCCGGGCTCCTGCCCAAGTCCCTAACCCTGTTCCAATCCGGTTCCCAACTCCAGCCCCAGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CAA 90 bp | AAGGAGTCTATGGGAGAGGCGGTGTCCGGTATGGAGCCTTGTGTCTaGGAGGACGAGGGAGTGAGCACTGGAAGGGGCCCCTGGATGGCC | + |
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Preference number: 6 (lower is better) Translates to: KESMGEAVSGMEPCV*EDEGVSTGRGPWMA Trigger: GGCCATCCAGGGGCCCCTTCCAGTGCTCACTCCCTCGTCCTCCAAGACACAAGGCTCCATACCGGACACCGCCTCTCCCATAGACTCCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CAA 90 bp | AGAAGCCAAGGAGTCTATGGGAGAGGCGGTGTCCGGTATGGAGCCTaGTGTCTTGGAGGACGAGGGAGTGAGCACTGGAAGGGGCCCCTG | + |
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Preference number: 6 (lower is better) Translates to: RSQGVYGRGGVRYGA*CLGGRGSEHWKGPL Trigger: CAGGGGCCCCTTCCAGTGCTCACTCCCTCGTCCTCCAAGACACAAGGCTCCATACCGGACACCGCCTCTCCCATAGACTCCTTGGCTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CCA 72 bp | GGAGTTGGGAACCGGATTGGAACAGGGTTAGGGACTTaGGCAGGAGCCCGGACCCGGATGGAAGTTCGGACT | + |
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Preference number: 6 (lower is better) Translates to: GVGNRIGTGLGT*AGARTRMEVRT Trigger: AGTCCGAACTTCCATCCGGGTCCGGGCTCCTGCCCAAGTCCCTAACCCTGTTCCAATCCGGTTCCCAACTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CAA 72 bp | TGGAGTTGGGAACCGGATTGGAACAGGGTTAGGGACTaGGGCAGGAGCCCGGACCCGGATGGAAGTTCGGAC | + |
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Preference number: 6 (lower is better) Translates to: WSWEPDWNRVRD*GRSPDPDGSSD Trigger: GTCCGAACTTCCATCCGGGTCCGGGCTCCTGCCCAAGTCCCTAACCCTGTTCCAATCCGGTTCCCAACTCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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| CDS CAA 90 bp | AACCTGGGTAGCTCTTTCCTCCTCAAACTCCAGAAGGTTTGGGAATaGATGCTCCAGGGTCCTTTTCAGTATAATGTACCGAAGGCCATA | + |
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Preference number: 6 (lower is better) Translates to: NLGSSFLLKLQKVWE*MLQGPFQYNVPKAI Trigger: TATGGCCTTCGGTACATTATACTGAAAAGGACCCTGGAGCATCAATTCCCAAACCTTCTGGAGTTTGAGGAGGAAAGAGCTACCCAGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056589.15 |
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