Pregenerated sensors for SELENOT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075700Ensembl transcript IDs: ENSMUST00000107924.3
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAATTACAAGTAGTAATGCTGTGTCAAGAAGAAACTATGACCAGTaGGCTGGGGAAGCTACACAGGATCACTGCACTACATGTATGTGC | + |
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Preference number: 1 (lower is better) Translates to: RITSSNAVSRRNYDQ*AGEATQDHCTTCMC Trigger: GCACATACATGTAGTGCAGTGATCCTGTGTAGCTTCCCCAGCCCACTGGTCATAGTTTCTTCTTGACACAGCATTACTACTTGTAATTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR GCA 90 bp | GCTCTTCCACTTAATCCCTTTCTGTTGCCACAGCTGCTATGTAACTaGTATTCAAAATTATGCTCTATTTCTGAGAAATCATTCTTATTG | + |
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Preference number: 1 (lower is better) Translates to: ALPLNPFLLPQLLCN*YSKLCSISEKSFLL Trigger: CAATAAGAATGATTTCTCAGAAATAGAGCATAATTTTGAATAGCAGTTACATAGCAGCTGTGGCAACAGAAAGGGATTAAGTGGAAGAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR GCA 90 bp | GATTACATTTGGCTCTTCCACTTAATCCCTTTCTGTTGCCACAGCTaGTATGTAACTGCTATTCAAAATTATGCTCTATTTCTGAGAAAT | + |
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Preference number: 1 (lower is better) Translates to: DYIWLFHLIPFCCHS*YVTAIQNYALFLRN Trigger: ATTTCTCAGAAATAGAGCATAATTTTGAATAGCAGTTACATAGCAGCTGTGGCAACAGAAAGGGATTAAGTGGAAGAGCCAAATGTAATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR TCA 90 bp | AAACCTTCCACAATAGCAACTGTGTTGAAAACACCAGTAAAATTAGCCAGCCTGGTCAAGAAGAAACTATaGCCAGTGGGCTGGGGAAGC | + |
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Preference number: 2 (lower is better) Translates to: KPSTIATVLKTPVKLASLVKKKL*PVGWGS Trigger: GCTTCCCCAGCCCACTGGTCATAGTTTCTTCTTGAC...CAGGCTGGCTAATTTTACTGGTGTTTTCAACACAGTTGCTATTGTGGAAGGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR GCA 90 bp | AAACCTTCCACAATAGCAACTGTGTTGAAAACACCAGTAAAATTAGCCAGCCTGCATCAAGTCTCCCATTaGAGTTCCTTCCCTCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: KPSTIATVLKTPVKLASLHQVSH*SSFPQL Trigger: GAGCTGAGGGAAGGAACTGCAATGGGAGACTTGATG...CAGGCTGGCTAATTTTACTGGTGTTTTCAACACAGTTGCTATTGTGGAAGGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR GCA 90 bp | CCCTCAGCTCATAACTTCCACTCACAAGTCCAGGATTACATTTGGCTCTTCCACTATAACTCAATGCTGTaGTTTCTCACACATGACCAA | + |
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Preference number: 2 (lower is better) Translates to: PSAHNFHSQVQDYIWLFHYNSML*FLTHDQ Trigger: TTGGTCATGTGTGAGAAAGCACAGCATTGAGTTATA...GTGGAAGAGCCAAATGTAATCCTGGACTTGTGAGTGGAAGTTATGAGCTGAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR GCA 90 bp | CCCTCAGCTCATAACTTCCACTCACAAGTCCAGGATTACATTTGGCTCTTCCACCAAGTTATAACTCAATaGTGTGCTTTCTCACACATG | + |
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Preference number: 2 (lower is better) Translates to: PSAHNFHSQVQDYIWLFHQVITQ*CAFSHM Trigger: CATGTGTGAGAAAGCACAGCATTGAGTTATAACTTG...GTGGAAGAGCCAAATGTAATCCTGGACTTGTGAGTGGAAGTTATGAGCTGAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR GCA 90 bp | AGCAACTGTGTTGAAAACACCAGTAAAATTAGCCAGCCTGCTGATACGTTGCGATCCGATGTTAAACTTTaGAAGATGTGGAGTCTGAAG | + |
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Preference number: 2 (lower is better) Translates to: SNCVENTSKISQPADTLRSDVKL*KMWSLK Trigger: CTTCAGACTCCACATCTTGCAAAGTTTAACATCGGA...TCGCAACGTATCAGCAGGCTGGCTAATTTTACTGGTGTTTTCAACACAGTTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR CCA 90 bp | AAACCTTCCACAATAGCAACTGTGTTGAAAACACCAGTAAAATTAGCCAGCCTGCATCTAAGAGTCAGGTaGCATCAACATCAAGTCTCC | + |
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Preference number: 2 (lower is better) Translates to: KPSTIATVLKTPVKLASLHLRVR*HQHQVS Trigger: GGAGACTTGATGTTGATGCCACCTGACTCTTAGATG...CAGGCTGGCTAATTTTACTGGTGTTTTCAACACAGTTGCTATTGTGGAAGGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR GCA 90 bp | AGCAACTGTGTTGAAAACACCAGTAAAATTAGCCAGCCTGCTGATACGTTGCGAACTAGACTATCTTCCTaGTATCTGAAGATCACAGTA | + |
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Preference number: 2 (lower is better) Translates to: SNCVENTSKISQPADTLRTRLSS*YLKITV Trigger: TACTGTGATCTTCAGATAGCAGGAAGATAGTCTAGT...TCGCAACGTATCAGCAGGCTGGCTAATTTTACTGGTGTTTTCAACACAGTTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR CCA 90 bp | TTACATTTGGCTCTTCCACTTAATCCCTTTCTGTTGCCACAGCTGCTATGTAACCTCTTAAAAATTATTTaGGAACTTCAGGTGTTGCCC | + |
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Preference number: 2 (lower is better) Translates to: LHLALPLNPFLLPQLLCNLLKII*ELQVLP Trigger: GGGCAACACCTGAAGTTCCCAAATAATTTTTAAGAG...GTTACATAGCAGCTGTGGCAACAGAAAGGGATTAAGTGGAAGAGCCAAATGTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR CCA 90 bp | AGCAACTGTGTTGAAAACACCAGTAAAATTAGCCAGCCTGCTGATACGTTGCGAAACCTAAGGCATACATaGAGAAAGTTAGATTTGACA | + |
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Preference number: 2 (lower is better) Translates to: SNCVENTSKISQPADTLRNLRHT*RKLDLT Trigger: TGTCAAATCTAACTTTCTCCATGTATGCCTTAGGTT...TCGCAACGTATCAGCAGGCTGGCTAATTTTACTGGTGTTTTCAACACAGTTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR CCA 90 bp | CTTAATCCCTTTCTGTTGCCACAGCTGCTATGTAACTGCTATTCAAAATTATGCCAGAGTAGAGTATTCTaGATATTGGATTTCCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: LNPFLLPQLLCNCYSKLCQSRVF*ILDFLS Trigger: GGAGAGGAAATCCAATATCCAGAATACTCTACTCTG...GCATAATTTTGAATAGCAGTTACATAGCAGCTGTGGCAACAGAAAGGGATTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR GCA 72 bp | CAGCTGTTCAGGCTGAGCAGCTGTCACGAATGCGAGTaGACAGCCACTGCCACTCACACACTGAGAGCACGT | + |
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Preference number: 3 (lower is better) Translates to: QLFRLSSCHECE*TATATHTLRAR Trigger: ACGTGCTCTCAGTGTGTGAGTGGCAGTGGCTGTGCACTCGCATTCGTGACAGCTGCTCAGCCTGAACAGCTG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR TCA 72 bp | ACGAATGCGAGTGCACAGCCACTGCCACTCACACACTaGGAGCACGTGTTCTCTACATCTGACACGCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: TNASAQPLPLTH*EHVFSTSDTLR Trigger: CCTCAGCGTGTCAGATGTAGAGAACACGTGCTCTCAGTGTGTGAGTGGCAGTGGCTGTGCACTCGCATTCGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR GCA 72 bp | ATTGCACAGCTGTTCAGGCTGAGCAGCTGTCACGAATaGGAGTGCACAGCCACTGCCACTCACACACTGAGA | + |
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Preference number: 3 (lower is better) Translates to: IAQLFRLSSCHE*ECTATATHTLR Trigger: TCTCAGTGTGTGAGTGGCAGTGGCTGTGCACTCGCATTCGTGACAGCTGCTCAGCCTGAACAGCTGTGCAAT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR GCA 72 bp | TATGACCAGTGGGCTGGGGAAGCTACACAGGATCACTaGACTACATGTATGTGCAGAATTCAGCATGGGCCA | + |
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Preference number: 3 (lower is better) Translates to: YDQWAGEATQDH*TTCMCRIQHGP Trigger: TGGCCCATGCTGAATTCTGCACATACATGTAGTGCAGTGATCCTGTGTAGCTTCCCCAGCCCACTGGTCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR GCA 72 bp | GGGGAAGCTACACAGGATCACTGCACTACATGTATGTaGAGAATTCAGCATGGGCCAGCATGGAAAACTGTC | + |
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Preference number: 3 (lower is better) Translates to: GEATQDHCTTCM*RIQHGPAWKTV Trigger: GACAGTTTTCCATGCTGGCCCATGCTGAATTCTGCACATACATGTAGTGCAGTGATCCTGTGTAGCTTCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR GCA 72 bp | CTAAGAGTCAGGTGGCATCAACATCAAGTCTCCCATTaGAGTTCCTTCCCTCAGCTCATAACTTCCACTCAC | + |
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Preference number: 3 (lower is better) Translates to: LRVRWHQHQVSH*SSFPQLITSTH Trigger: GTGAGTGGAAGTTATGAGCTGAGGGAAGGAACTGCAATGGGAGACTTGATGTTGATGCCACCTGACTCTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR CAA 90 bp | AGCAACTGTGTTGAAAACACCAGTAAAATTAGCCAGCCTGCTGATACGTTGCGACTTAATCCCTTTCTGTaGCCACAGCTGCTATGTAAC | + |
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Preference number: 3 (lower is better) Translates to: SNCVENTSKISQPADTLRLNPFL*PQLLCN Trigger: GTTACATAGCAGCTGTGGCAACAGAAAGGGATTAAG...TCGCAACGTATCAGCAGGCTGGCTAATTTTACTGGTGTTTTCAACACAGTTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR CAA 90 bp | AAACCTTCCACAATAGCAACTGTGTTGAAAACACCAGTAAAATTAGCCAGCCTGACATCAAGTCTCCCATaGCAGTTCCTTCCCTCAGCT | + |
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Preference number: 3 (lower is better) Translates to: KPSTIATVLKTPVKLASLTSSLP*QFLPSA Trigger: AGCTGAGGGAAGGAACTGCAATGGGAGACTTGATGT...CAGGCTGGCTAATTTTACTGGTGTTTTCAACACAGTTGCTATTGTGGAAGGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR-3UTR CAA 90 bp | TCACAATGCCACAAAGAAGTCCCAAATCTTTACAATTCTTTACTTGCTTCTCATAGTCCAGGATTACATTaGGCTCTTCCACTTAATCCC | + |
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Preference number: 3 (lower is better) Translates to: SQCHKEVPNLYNSLLASHSPGLH*ALPLNP Trigger: GGGATTAAGTGGAAGAGCCAAATGTAATCCTGGACT...ATGAGAAGCAAGTAAAGAATTGTAAAGATTTGGGACTTCTTTGTGGCATTGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR GCA 72 bp | TGGCTCTTCCACTTAATCCCTTTCTGTTGCCACAGCTaGTATGTAACTGCTATTCAAAATTATGCTCTATTT | + |
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Preference number: 3 (lower is better) Translates to: WLFHLIPFCCHS*YVTAIQNYALF Trigger: AAATAGAGCATAATTTTGAATAGCAGTTACATAGCAGCTGTGGCAACAGAAAGGGATTAAGTGGAAGAGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR GCA 72 bp | GATTACATTTGGCTCTTCCACTTAATCCCTTTCTGTTaGCACAGCTGCTATGTAACTGCTATTCAAAATTAT | + |
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Preference number: 3 (lower is better) Translates to: DYIWLFHLIPFC*HSCYVTAIQNY Trigger: ATAATTTTGAATAGCAGTTACATAGCAGCTGTGGCAACAGAAAGGGATTAAGTGGAAGAGCCAAATGTAATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| CDS-3UTR GCA 90 bp | ATGCTAAGAGAGGCACTGAGCAGTAAACTTTCATTTAACTTAACATCTGCTCAGTGGCAGAGGCCTCGCTaGGGACCACCGCCGACGCCG | + |
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Preference number: 4 (lower is better) Translates to: MLREALSSKLSFNLTSAQWQRPR*GPPPTP Trigger: CGGCGTCGGCGGTGGTCCGCAGCGAGGCCTCTGCCA...CTGAGCAGATGTTAAGTTAAATGAAAGTTTACTGCTCAGTGCCTCTCTTAGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| CDS-3UTR CCA 90 bp | GATCACTGCACTACATGTATGTGCAGAATTCAGCATGGGCCAGCATGGAAAACTTTCAATGCGGATGTCTaGATACCGCTGGCTGATAAC | + |
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Preference number: 4 (lower is better) Translates to: DHCTTCMCRIQHGPAWKTFNADV*IPLADN Trigger: GTTATCAGCCAGCGGTATCCAGACATCCGCATTGAA...AGTTTTCCATGCTGGCCCATGCTGAATTCTGCACATACATGTAGTGCAGTGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR CAA 72 bp | TCTAAGAGTCAGGTGGCATCAACATCAAGTCTCCCATaGCAGTTCCTTCCCTCAGCTCATAACTTCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: SKSQVASTSSLP*QFLPSAHNFHS Trigger: TGAGTGGAAGTTATGAGCTGAGGGAAGGAACTGCAATGGGAGACTTGATGTTGATGCCACCTGACTCTTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| CDS-3UTR CCA 90 bp | TCACAATGCCACAAAGAAGTCCCAAATCTTTACAATTCTTTACTTGCTTCTCATATGTCTGGATACCGCTaGCTGATAACCCGCATGTAC | + |
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Preference number: 4 (lower is better) Translates to: SQCHKEVPNLYNSLLASHMSGYR*LITRMY Trigger: GTACATGCGGGTTATCAGCCAGCGGTATCCAGACAT...ATGAGAAGCAAGTAAAGAATTGTAAAGATTTGGGACTTCTTTGTGGCATTGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR CAA 72 bp | GGATTACATTTGGCTCTTCCACTTAATCCCTTTCTGTaGCCACAGCTGCTATGTAACTGCTATTCAAAATTA | + |
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Preference number: 4 (lower is better) Translates to: GLHLALPLNPFL*PQLLCNCYSKL Trigger: TAATTTTGAATAGCAGTTACATAGCAGCTGTGGCAACAGAAAGGGATTAAGTGGAAGAGCCAAATGTAATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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| 3UTR CAA 72 bp | ATGGAGAAAGTTAGATTTGACATTGTCCTTCATAGTTaGACCTGTCAAGTACACATGAACATCCATGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: MEKVRFDIVLHS*TCQVHMNIHGS Trigger: TGAGCCATGGATGTTCATGTGTACTTGACAGGTCAAACTATGAAGGACAATGTCAAATCTAACTTTCTCCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107924.3 |
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