RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SELENOS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075701

Ensembl transcript IDs: ENSMUST00000101801.8, ENSMUST00000205279.2, ENSMUST00000206044.2, ENSMUST00000206575.2

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AATGTCAGAGCGACACTAACAAGAGTCTTAGTTTCAGCCGCCAGATaGTGGGCCCCTGCGTCCAGGTCTCCAGGAGCAGGTTCCACCCCC +
Preference number: 1 (lower is better)
Translates to: NVRATLTRVLVSAAR*WAPASRSPGAGSTP
Trigger: GGGGGTGGAACCTGCTCCTGGAGACCTGGACGCAGGGGCCCATCATCTGGCGGCTGAAACTAAGACTCTTGTTAGTGTCGCTCTGACATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
3UTR GCA 90 bp TATAAGGAAGACATCATTCAACGCATCCCGTCACAGAGACCATCCTaGCAGCAAGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCT +
Preference number: 1 (lower is better)
Translates to: YKEDIIQRIPSQRPS*QQGLLPQSIITGPS
Trigger: AGAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCTTGCTGGCAGGATGGTCTCTGTGACGGGATGCGTTGAATGATGTCTTCCTTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
3UTR GCA 90 bp TTTAGATCTTCCTGCATTCTCAAACGAGCAGCTGCTAAAGCCTCTTaGCGCTTAACAACAACATCAGGTTCCAGAACAGTCTCGGCTTGG +
Preference number: 1 (lower is better)
Translates to: FRSSCILKRAAAKAS*RLTTTSGSRTVSAW
Trigger: CCAAGCCGAGACTGTTCTGGAACCTGATGTTGTTGTTAAGCGGCAAGAGGCTTTAGCAGCTGCTCGTTTGAGAATGCAGGAAGATCTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
3UTR CCA 90 bp GAGACCATCCTGCCAGCAAGGACTTCTACCCCAAAGTATCATCACTaGGCCTTCTTTATGAAGTCTGCTAAACAGCAAGAAGCCTTCAAC +
Preference number: 1 (lower is better)
Translates to: ETILPARTSTPKYHH*AFFMKSAKQQEAFN
Trigger: GTTGAAGGCTTCTTGCTGTTTAGCAGACTTCATAAAGAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCTTGCTGGCAGGATGGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
3UTR TCA 90 bp TCTCCTTGGCCAGTCACTGTGAAAGTGTGCGTAAGGCAATTGAGTTaGGGGTTAAAGGTTCACCTTGCTAATGTCAGAGCGACACTAACA +
Preference number: 1 (lower is better)
Translates to: SPWPVTVKVCVRQLS*GLKVHLANVRATLT
Trigger: TGTTAGTGTCGCTCTGACATTAGCAAGGTGAACCTTTAACCCTCAACTCAATTGCCTTACGCACACTTTCACAGTGACTGGCCAAGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000101801.8
ENSMUST00000205279.2
ENSMUST00000206044.2
ENSMUST00000206575.2
3UTR TCA 90 bp CAGCAAGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCTTTATaGAGTCTGCTAAACAGCAAGAAGCCTTCAACCTACCAACTAGCC +
Preference number: 1 (lower is better)
Translates to: QQGLLPQSIITGPSL*SLLNSKKPSTYQLA
Trigger: GGCTAGTTGGTAGGTTGAAGGCTTCTTGCTGTTTAGCAGACTTCATAAAGAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCTTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
3UTR CCA 90 bp TTCTCTTCTTCAAGCTGTCTTAGTTTTTCCTTATGTTTTTCAACTTaGGCATTTAGATCTTCCTGCATTCTCAAACGAGCAGCTGCTAAA +
Preference number: 1 (lower is better)
Translates to: FSSSSCLSFSLCFST*AFRSSCILKRAAAK
Trigger: TTTAGCAGCTGCTCGTTTGAGAATGCAGGAAGATCTAAATGCCCAAGTTGAAAAACATAAGGAAAAACTAAGACAGCTTGAAGAAGAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
3UTR-3UTR TCA 90 bp GGAGCAGGTTCCACCCCCTTCACCCGTCAGAGGGTTATAACCACCTCCTCGCAAGGACCATCTTCTTCCTaGGGCCTTCCTGAATTTCTT +
Preference number: 2 (lower is better)
Translates to: GAGSTPFTRQRVITTSSQGPSSS*GLPEFL
Trigger: AAGAAATTCAGGAAGGCCTCAGGAAGAAGATGGTCC...TTGCGAGGAGGTGGTTATAACCCTCTGACGGGTGAAGGGGGTGGAACCTGCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
3UTR-3UTR CCA 90 bp TTCAACGCATCCCGTCACAGAGACCATCCTGCCAGCAAGGACTTCTACCCCAAAAGCCCCACCTCTCCTTaGCCAGTCACTGTGAAAGTG +
Preference number: 2 (lower is better)
Translates to: FNASRHRDHPASKDFYPKSPTSP*PVTVKV
Trigger: CACTTTCACAGTGACTGGCCAAGGAGAGGTGGGGCT...TTTGGGGTAGAAGTCCTTGCTGGCAGGATGGTCTCTGTGACGGGATGCGTTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
3UTR-3UTR CCA 90 bp AAGCCTTCAACCTACCAACTAGCCAGCAGCCATAAAAGCCATGGCTGTCTTGTCAGAACAGTCTCGGCTTaGTCCAGCTGTCTCTGCCTC +
Preference number: 2 (lower is better)
Translates to: KPSTYQLASSHKSHGCLVRTVSA*SSCLCL
Trigger: GAGGCAGAGACAGCTGGACCAAGCCGAGACTGTTCT...GACAAGACAGCCATGGCTTTTATGGCTGCTGGCTAGTTGGTAGGTTGAAGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
3UTR-3UTR CCA 90 bp AAGAAGCCTTCAACCTACCAACTAGCCAGCAGCCATAAAAGCCATGGCTGTCTTAGCCCCACCTCTCCTTaGCCAGTCACTGTGAAAGTG +
Preference number: 2 (lower is better)
Translates to: KKPSTYQLASSHKSHGCLSPTSP*PVTVKV
Trigger: CACTTTCACAGTGACTGGCCAAGGAGAGGTGGGGCT...AAGACAGCCATGGCTTTTATGGCTGCTGGCTAGTTGGTAGGTTGAAGGCTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000101801.8
ENSMUST00000205279.2
ENSMUST00000206044.2
ENSMUST00000206575.2
3UTR-3UTR GCA 90 bp CACTGTGAAAGTGTGCGTAAGGCAATTGAGTTGAGGGTTAAAGGTTCACCTTGCTCACAGAGACCATCCTaGCAGCAAGGACTTCTACCC +
Preference number: 2 (lower is better)
Translates to: HCESVRKAIELRVKGSPCSQRPS*QQGLLP
Trigger: GGGTAGAAGTCCTTGCTGGCAGGATGGTCTCTGTGA...GCAAGGTGAACCTTTAACCCTCAACTCAATTGCCTTACGCACACTTTCACAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
3UTR-3UTR TCA 90 bp CTGCTAAACAGCAAGAAGCCTTCAACCTACCAACTAGCCAGCAGCCATAAAAGCGTAAGGCAATTGAGTTaGGGGTTAAAGGTTCACCTT +
Preference number: 2 (lower is better)
Translates to: LLNSKKPSTYQLASSHKSVRQLS*GLKVHL
Trigger: AAGGTGAACCTTTAACCCTCAACTCAATTGCCTTAC...GCTTTTATGGCTGCTGGCTAGTTGGTAGGTTGAAGGCTTCTTGCTGTTTAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000101801.8
ENSMUST00000205279.2
ENSMUST00000206044.2
ENSMUST00000206575.2
3UTR-3UTR TCA 90 bp ATCCTGCCAGCAAGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCTTTATGGTAAGGCAATTGAGTTaGGGGTTAAAGGTTCACCTT +
Preference number: 2 (lower is better)
Translates to: ILPARTSTPKYHHWAFFMVRQLS*GLKVHL
Trigger: AAGGTGAACCTTTAACCCTCAACTCAATTGCCTTAC...CATAAAGAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCTTGCTGGCAGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
3UTR-3UTR CCA 90 bp CTGCTAAACAGCAAGAAGCCTTCAACCTACCAACTAGCCAGCAGCCATAAAAGCGTCTTGTCTAGAGTGTaGCCTAATGGCAATGTCTAT +
Preference number: 2 (lower is better)
Translates to: LLNSKKPSTYQLASSHKSVLSRV*PNGNVY
Trigger: ATAGACATTGCCATTAGGCCACACTCTAGACAAGAC...GCTTTTATGGCTGCTGGCTAGTTGGTAGGTTGAAGGCTTCTTGCTGTTTAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000101801.8
ENSMUST00000205279.2
ENSMUST00000206044.2
ENSMUST00000206575.2
3UTR-3UTR TCA 90 bp ATAAAAGCCATGGCTGTCTTGTCTAGAGTGTGGCCTAATGGCAATGTCTATATCAAACCCCGTCAACTGTaGACATCAGTAATCCTCACT +
Preference number: 2 (lower is better)
Translates to: IKAMAVLSRVWPNGNVYIKPRQL*TSVILT
Trigger: AGTGAGGATTACTGATGTTCACAGTTGACGGGGTTT...GATATAGACATTGCCATTAGGCCACACTCTAGACAAGACAGCCATGGCTTTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
3UTR-3UTR CCA 90 bp AAGTATCATCACTGGGCCTTCTTTATGAAGTCTGCTAAACAGCAAGAAGCCTTCGTCTTGTCTAGAGTGTaGCCTAATGGCAATGTCTAT +
Preference number: 2 (lower is better)
Translates to: KYHHWAFFMKSAKQQEAFVLSRV*PNGNVY
Trigger: ATAGACATTGCCATTAGGCCACACTCTAGACAAGAC...GAAGGCTTCTTGCTGTTTAGCAGACTTCATAAAGAAGGCCCAGTGATGATACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
3UTR-3UTR TCA 90 bp AAAGCTGTTTACTGTCTGACAAAGTCAAGCTCACAAAGAAATTTCCTTGAGTTTAAACCCCGTCAACTGTaGACATCAGTAATCCTCACT +
Preference number: 2 (lower is better)
Translates to: KAVYCLTKSSSQRNFLEFKPRQL*TSVILT
Trigger: AGTGAGGATTACTGATGTTCACAGTTGACGGGGTTT...AAACTCAAGGAAATTTCTTTGTGAGCTTGACTTTGTCAGACAGTAAACAGCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
3UTR TCA 72 bp GCGACACTAACAAGAGTCTTAGTTTCAGCCGCCAGATaGTGGGCCCCTGCGTCCAGGTCTCCAGGAGCAGGT +
Preference number: 3 (lower is better)
Translates to: ATLTRVLVSAAR*WAPASRSPGAG
Trigger: ACCTGCTCCTGGAGACCTGGACGCAGGGGCCCATCATCTGGCGGCTGAAACTAAGACTCTTGTTAGTGTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
3UTR GCA 72 bp GACATCATTCAACGCATCCCGTCACAGAGACCATCCTaGCAGCAAGGACTTCTACCCCAAAGTATCATCACT +
Preference number: 3 (lower is better)
Translates to: DIIQRIPSQRPS*QQGLLPQSIIT
Trigger: AGTGATGATACTTTGGGGTAGAAGTCCTTGCTGGCAGGATGGTCTCTGTGACGGGATGCGTTGAATGATGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
3UTR GCA 72 bp TCCTGCATTCTCAAACGAGCAGCTGCTAAAGCCTCTTaGCGCTTAACAACAACATCAGGTTCCAGAACAGTC +
Preference number: 3 (lower is better)
Translates to: SCILKRAAAKAS*RLTTTSGSRTV
Trigger: GACTGTTCTGGAACCTGATGTTGTTGTTAAGCGGCAAGAGGCTTTAGCAGCTGCTCGTTTGAGAATGCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
3UTR-3UTR CAA 90 bp AGTACAAGTAGTTTAGAACAGAGAAAAGCCCCACCTCTCCTTGGCCAGTCACTGGTAACTTCTGCCTTCTaGCATGCTGTCCCACATTTC +
Preference number: 3 (lower is better)
Translates to: STSSLEQRKAPPLLGQSLVTSAF*HAVPHF
Trigger: GAAATGTGGGACAGCATGCAAGAAGGCAGAAGTTAC...CAGTGACTGGCCAAGGAGAGGTGGGGCTTTTCTCTGTTCTAAACTACTTGTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
3UTR TCA 72 bp CCAGTCACTGTGAAAGTGTGCGTAAGGCAATTGAGTTaGGGGTTAAAGGTTCACCTTGCTAATGTCAGAGCG +
Preference number: 3 (lower is better)
Translates to: PVTVKVCVRQLS*GLKVHLANVRA
Trigger: CGCTCTGACATTAGCAAGGTGAACCTTTAACCCTCAACTCAATTGCCTTACGCACACTTTCACAGTGACTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000101801.8
ENSMUST00000205279.2
ENSMUST00000206044.2
ENSMUST00000206575.2
3UTR GCA 72 bp TCCTTATGTTTTTCAACTTGGGCATTTAGATCTTCCTaGATTCTCAAACGAGCAGCTGCTAAAGCCTCTTGC +
Preference number: 3 (lower is better)
Translates to: SLCFSTWAFRSS*ILKRAAAKASC
Trigger: GCAAGAGGCTTTAGCAGCTGCTCGTTTGAGAATGCAGGAAGATCTAAATGCCCAAGTTGAAAAACATAAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
CDS-3UTR TCA 90 bp GCATTTAGATCTTCCTGCATTCTCAAACGAGCAGCTGCTAAAGCCTCTTGCCGCGGCGCCCGCCGCCCCTaGCCTGTCACGTGCAGGAAT +
Preference number: 4 (lower is better)
Translates to: AFRSSCILKRAAAKASCRGARRP*PVTCRN
Trigger: ATTCCTGCACGTGACAGGTCAGGGGCGGCGGGCGCC...GCGGCAAGAGGCTTTAGCAGCTGCTCGTTTGAGAATGCAGGAAGATCTAAATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
CDS-3UTR GCA 90 bp GAGACCATCCTGCCAGCAAGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCCAGATGATGGGCCCCTaGGTCCAGGTCTCCAGGAGC +
Preference number: 4 (lower is better)
Translates to: ETILPARTSTPKYHHWAFQMMGP*VQVSRS
Trigger: GCTCCTGGAGACCTGGACGCAGGGGCCCATCATCTG...GAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCTTGCTGGCAGGATGGTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR CCA 90 bp TTCAACGCATCCCGTCACAGAGACCATCCTGCCAGCAAGGACTTCTACCCCAAATGTACCAGCCATAGCTaGCCAGCAGGGAGCCCACTG +
Preference number: 4 (lower is better)
Translates to: FNASRHRDHPASKDFYPKCTSHS*PAGSPL
Trigger: CAGTGGGCTCCCTGCTGGCCAGCTATGGCTGGTACA...TTTGGGGTAGAAGTCCTTGCTGGCAGGATGGTCTCTGTGACGGGATGCGTTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp GCCAGTCACTGTGAAAGTGTGCGTAAGGCAATTGAGTTGAGGGTTAAAGGTTCAGTTTCAGCCGCCAGATaGTGGGCCCCTGCGTCCAGG +
Preference number: 4 (lower is better)
Translates to: ASHCESVRKAIELRVKGSVSAAR*WAPASR
Trigger: CCTGGACGCAGGGGCCCATCATCTGGCGGCTGAAAC...TGAACCTTTAACCCTCAACTCAATTGCCTTACGCACACTTTCACAGTGACTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101801.8
CDS-3UTR GCA 90 bp CATCCTGCCAGCAAGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCTTTATCAGATGATGGGCCCCTaGGTCCAGGTCTCCAGGAGC +
Preference number: 4 (lower is better)
Translates to: HPASKDFYPKVSSLGLLYQMMGP*VQVSRS
Trigger: GCTCCTGGAGACCTGGACGCAGGGGCCCATCATCTG...ATAAAGAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCTTGCTGGCAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR CCA 90 bp CTCTCCTTGGCCAGTCACTGTGAAAGTGTGCGTAAGGCAATTGAGTTGAGGGTTTGTACCAGCCATAGCTaGCCAGCAGGGAGCCCACTG +
Preference number: 4 (lower is better)
Translates to: LSLASHCESVRKAIELRVCTSHS*PAGSPL
Trigger: CAGTGGGCTCCCTGCTGGCCAGCTATGGCTGGTACA...AACCCTCAACTCAATTGCCTTACGCACACTTTCACAGTGACTGGCCAAGGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR CCA 90 bp TTCAACGCATCCCGTCACAGAGACCATCCTGCCAGCAAGGACTTCTACCCCAAAAGAACAGTCTCGGCTTaGTCCAGCTGTCTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: FNASRHRDHPASKDFYPKRTVSA*SSCLCL
Trigger: GAGGCAGAGACAGCTGGACCAAGCCGAGACTGTTCT...TTTGGGGTAGAAGTCCTTGCTGGCAGGATGGTCTCTGTGACGGGATGCGTTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp GAGACCATCCTGCCAGCAAGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCAGAGTAGGATGCAGCTaGAGAGGATGTACCAGCCAT +
Preference number: 4 (lower is better)
Translates to: ETILPARTSTPKYHHWAFRVGCS*RGCTSH
Trigger: ATGGCTGGTACATCCTCTTCAGCTGCATCCTACTCT...GAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCTTGCTGGCAGGATGGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR CCA 90 bp GCAGCCATAAAAGCCATGGCTGTCTTGTCTAGAGTGTGGCCTAATGGCAATGTCAGAACAGTCTCGGCTTaGTCCAGCTGTCTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: AAIKAMAVLSRVWPNGNVRTVSA*SSCLCL
Trigger: GAGGCAGAGACAGCTGGACCAAGCCGAGACTGTTCT...GACATTGCCATTAGGCCACACTCTAGACAAGACAGCCATGGCTTTTATGGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR CCA 90 bp GATTTTCCTTTGGGGATGACAGATGAAGTAGAAGGTCCAGGACCATCTTCTTCCTGTACCAGCCATAGCTaGCCAGCAGGGAGCCCACGA +
Preference number: 4 (lower is better)
Translates to: DFPLGMTDEVEGPGPSSSCTSHS*PAGSPR
Trigger: TCGTGGGCTCCCTGCTGGCCAGCTATGGCTGGTACA...GGAAGAAGATGGTCCTGGACCTTCTACTTCATCTGTCATCCCCAAAGGAAAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
CDS-3UTR GCA 90 bp ATAAAAGCCATGGCTGTCTTGTCTAGAGTGTGGCCTAATGGCAATGTCTATATCCAGATGATGGGCCCCTaGGTCCAGGTCTCCAGGAGC +
Preference number: 4 (lower is better)
Translates to: IKAMAVLSRVWPNGNVYIQMMGP*VQVSRS
Trigger: GCTCCTGGAGACCTGGACGCAGGGGCCCATCATCTG...GATATAGACATTGCCATTAGGCCACACTCTAGACAAGACAGCCATGGCTTTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp GACATCATTCAACGCATCCCGTCACAGAGACCATCCTGCCAGCAAGGACTTCTAGGACCATCTTCTTCCTaGGGCCTTCCTGAATTTCTT +
Preference number: 4 (lower is better)
Translates to: DIIQRIPSQRPSCQQGLLGPSSS*GLPEFL
Trigger: AAGAAATTCAGGAAGGCCTCAGGAAGAAGATGGTCC...TAGAAGTCCTTGCTGGCAGGATGGTCTCTGTGACGGGATGCGTTGAATGATGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp CTCTCCTTGGCCAGTCACTGTGAAAGTGTGCGTAAGGCAATTGAGTTGAGGGTTTTTGGGGATGACAGATaGAGTAGAAGGTCCAGGACC +
Preference number: 4 (lower is better)
Translates to: LSLASHCESVRKAIELRVFGDDR*SRRSRT
Trigger: GGTCCTGGACCTTCTACTTCATCTGTCATCCCCAAA...AACCCTCAACTCAATTGCCTTACGCACACTTTCACAGTGACTGGCCAAGGAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp AAGCCTTCAACCTACCAACTAGCCAGCAGCCATAAAAGCCATGGCTGTCTTGTCTTTGGGGATGACAGATaGAGTAGAAGGTCCAGGACC +
Preference number: 4 (lower is better)
Translates to: KPSTYQLASSHKSHGCLVFGDDR*SRRSRT
Trigger: GGTCCTGGACCTTCTACTTCATCTGTCATCCCCAAA...GACAAGACAGCCATGGCTTTTATGGCTGCTGGCTAGTTGGTAGGTTGAAGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp CTCTCCTTGGCCAGTCACTGTGAAAGTGTGCGTAAGGCAATTGAGTTGAGGGTTGGACCATCTTCTTCCTaGGGCCTTCCTGAATTTCTT +
Preference number: 4 (lower is better)
Translates to: LSLASHCESVRKAIELRVGPSSS*GLPEFL
Trigger: AAGAAATTCAGGAAGGCCTCAGGAAGAAGATGGTCC...AACCCTCAACTCAATTGCCTTACGCACACTTTCACAGTGACTGGCCAAGGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp CTGCTAAACAGCAAGAAGCCTTCAACCTACCAACTAGCCAGCAGCCATAAAAGCTTTGGGGATGACAGATaGAGTAGAAGGTCCAGGACC +
Preference number: 4 (lower is better)
Translates to: LLNSKKPSTYQLASSHKSFGDDR*SRRSRT
Trigger: GGTCCTGGACCTTCTACTTCATCTGTCATCCCCAAA...GCTTTTATGGCTGCTGGCTAGTTGGTAGGTTGAAGGCTTCTTGCTGTTTAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR GCA 90 bp CACAGAGACCATCCTGCCAGCAAGGACTTCTACCCCAAAGTATCATCACTGGGCTTCTTTTGTAACTTCTaGCTTCTTGCATGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: HRDHPASKDFYPKVSSLGFFCNF*LLACCP
Trigger: GGGACAGCATGCAAGAAGGCAGAAGTTACAAAAGAA...GCCCAGTGATGATACTTTGGGGTAGAAGTCCTTGCTGGCAGGATGGTCTCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp TGTCTAGAGTGTGGCCTAATGGCAATGTCTATATCTCATGCTGACCAAAGCCCTAGAGTAGGATGCAGCTaGAGAGGATGTACCAGCCAT +
Preference number: 4 (lower is better)
Translates to: CLECGLMAMSISHADQSPRVGCS*RGCTSH
Trigger: ATGGCTGGTACATCCTCTTCAGCTGCATCCTACTCT...AGGGCTTTGGTCAGCATGAGATATAGACATTGCCATTAGGCCACACTCTAGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000205279.2
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp AAAGCCATGGCTGTCTTGTCTAGAGTGTGGCCTAATGGCAATGTCTATATCTCAAGAGTAGGATGCAGCTaGAGAGGATGTACCAGCCAT +
Preference number: 4 (lower is better)
Translates to: KAMAVLSRVWPNGNVYISRVGCS*RGCTSH
Trigger: ATGGCTGGTACATCCTCTTCAGCTGCATCCTACTCT...TGAGATATAGACATTGCCATTAGGCCACACTCTAGACAAGACAGCCATGGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000205279.2
ENSMUST00000206575.2
CDS-3UTR GCA 90 bp GCAGCCATAAAAGCCATGGCTGTCTTGTCTAGAGTGTGGCCTAATGGCAATGTCGCATTTAGATCTTCCTaGATTCTCAAACGAGCAGCT +
Preference number: 4 (lower is better)
Translates to: AAIKAMAVLSRVWPNGNVAFRSS*ILKRAA
Trigger: AGCTGCTCGTTTGAGAATGCAGGAAGATCTAAATGC...GACATTGCCATTAGGCCACACTCTAGACAAGACAGCCATGGCTTTTATGGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR GCA 90 bp ACATCAGTAATCCTCACTGGTGGGTTCACCATTTATAAGGAAGACATCATTCAATGGTCCAGCTGTCTCTaGCTCAAAGCCCTCAGTCGA +
Preference number: 4 (lower is better)
Translates to: TSVILTGGFTIYKEDIIQWSSCL*LKALSR
Trigger: TCGACTGAGGGCTTTGAGGCAGAGACAGCTGGACCA...TTGAATGATGTCTTCCTTATAAATGGTGAACCCACCAGTGAGGATTACTGATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp AAGTATCATCACTGGGCCTTCTTTATGAAGTCTGCTAAACAGCAAGAAGCCTTCGGACCATCTTCTTCCTaGGGCCTTCCTGAATTTCTT +
Preference number: 4 (lower is better)
Translates to: KYHHWAFFMKSAKQQEAFGPSSS*GLPEFL
Trigger: AAGAAATTCAGGAAGGCCTCAGGAAGAAGATGGTCC...GAAGGCTTCTTGCTGTTTAGCAGACTTCATAAAGAAGGCCCAGTGATGATACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR GCA 90 bp TGGCTGTCTTGTCTAGAGTGTGGCCTAATGGCAATGTCTATATCTCATGCTGACGCATTTAGATCTTCCTaGATTCTCAAACGAGCAGCT +
Preference number: 4 (lower is better)
Translates to: WLSCLECGLMAMSISHADAFRSS*ILKRAA
Trigger: AGCTGCTCGTTTGAGAATGCAGGAAGATCTAAATGC...GTCAGCATGAGATATAGACATTGCCATTAGGCCACACTCTAGACAAGACAGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp GCCATAAAAGCCATGGCTGTCTTGTCTAGAGTGTGGCCTAATGGCAATGTCTATTTCCTGAGGCCTTCCTaGATTTCTTTTGTAACTTCT +
Preference number: 4 (lower is better)
Translates to: AIKAMAVLSRVWPNGNVYFLRPS*ISFVTS
Trigger: AGAAGTTACAAAAGAAATTCAGGAAGGCCTCAGGAA...ATAGACATTGCCATTAGGCCACACTCTAGACAAGACAGCCATGGCTTTTATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR TCA 90 bp TGTCTAGAGTGTGGCCTAATGGCAATGTCTATATCTCATGCTGACCAAAGCCCTTTCCTGAGGCCTTCCTaGATTTCTTTTGTAACTTCT +
Preference number: 4 (lower is better)
Translates to: CLECGLMAMSISHADQSPFLRPS*ISFVTS
Trigger: AGAAGTTACAAAAGAAATTCAGGAAGGCCTCAGGAA...AGGGCTTTGGTCAGCATGAGATATAGACATTGCCATTAGGCCACACTCTAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR GCA 90 bp AGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCTTTATGAAGTCTGCTAAAGCTGCTAAAGCCTCTTaGCGCTTAACAACAACATCA +
Preference number: 4 (lower is better)
Translates to: RTSTPKYHHWAFFMKSAKAAKAS*RLTTTS
Trigger: TGATGTTGTTGTTAAGCGGCAAGAGGCTTTAGCAGC...TTTAGCAGACTTCATAAAGAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR GCA 90 bp CATCACTGGGCCTTCTTTATGAAGTCTGCTAAACAGCAAGAAGCCTTCAACCTATTCTTTTGTAACTTCTaGCTTCTTGCATGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: HHWAFFMKSAKQQEAFNLFFCNF*LLACCP
Trigger: GGGACAGCATGCAAGAAGGCAGAAGTTACAAAAGAA...TAGGTTGAAGGCTTCTTGCTGTTTAGCAGACTTCATAAAGAAGGCCCAGTGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR GCA 90 bp ATAAAAGCCATGGCTGTCTTGTCTAGAGTGTGGCCTAATGGCAATGTCTATATCTTCTTTTGTAACTTCTaGCTTCTTGCATGCTGTCCC +
Preference number: 4 (lower is better)
Translates to: IKAMAVLSRVWPNGNVYIFFCNF*LLACCP
Trigger: GGGACAGCATGCAAGAAGGCAGAAGTTACAAAAGAA...GATATAGACATTGCCATTAGGCCACACTCTAGACAAGACAGCCATGGCTTTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR GCA 90 bp AAAGCTGTTTACTGTCTGACAAAGTCAAGCTCACAAAGAAATTTCCTTGAGTTTGCTGCTAAAGCCTCTTaGCGCTTAACAACAACATCA +
Preference number: 4 (lower is better)
Translates to: KAVYCLTKSSSQRNFLEFAAKAS*RLTTTS
Trigger: TGATGTTGTTGTTAAGCGGCAAGAGGCTTTAGCAGC...AAACTCAAGGAAATTTCTTTGTGAGCTTGACTTTGTCAGACAGTAAACAGCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR CCA 90 bp AGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCTTTATGAAGTCTGCTAAATTATGTTTTTCAACTTaGGCATTTAGATCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: RTSTPKYHHWAFFMKSAKLCFST*AFRSSC
Trigger: GCAGGAAGATCTAAATGCCCAAGTTGAAAAACATAA...TTTAGCAGACTTCATAAAGAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS CCA 90 bp AGAGGATGTACCAGCCATAGCTGGCCAGCAGGGAGCCCACGAGCATaGCGGCGCCCGCCGCCCCTGACCTGTCACGTGCAGGAATCGCAG +
Preference number: 5 (lower is better)
Translates to: RGCTSHSWPAGSPRA*RRPPPLTCHVQESQ
Trigger: CTGCGATTCCTGCACGTGACAGGTCAGGGGCGGCGGGCGCCGCCATGCTCGTGGGCTCCCTGCTGGCCAGCTATGGCTGGTACATCCTCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2
CDS GCA 90 bp ACAACATCAGGTTCCAGAACAGTCTCGGCTTGGTCCAGCTGTCTCTaGCTCAAAGCCCTCAGTCGAAGGGAGAGCCTCTGGATGACAATG +
Preference number: 5 (lower is better)
Translates to: TTSGSRTVSAWSSCL*LKALSRRESLWMTM
Trigger: CATTGTCATCCAGAGGCTCTCCCTTCGACTGAGGGCTTTGAGGCAGAGACAGCTGGACCAAGCCGAGACTGTTCTGGAACCTGATGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR CAA 90 bp GAGACCATCCTGCCAGCAAGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCCCTCGCAAAGGCTTTTaGTCAGATTTTCCTTTGGGG +
Preference number: 5 (lower is better)
Translates to: ETILPARTSTPKYHHWAFPRKGF*SDFPLG
Trigger: CCCCAAAGGAAAATCTGACAAAAAGCCTTTGCGAGG...GAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCTTGCTGGCAGGATGGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR CAA 90 bp CTCTCCTTGGCCAGTCACTGTGAAAGTGTGCGTAAGGCAATTGAGTTGAGGGTTGTAACTTCTGCCTTCTaGCATGCTGTCCCACATTTC +
Preference number: 5 (lower is better)
Translates to: LSLASHCESVRKAIELRVVTSAF*HAVPHF
Trigger: GAAATGTGGGACAGCATGCAAGAAGGCAGAAGTTAC...AACCCTCAACTCAATTGCCTTACGCACACTTTCACAGTGACTGGCCAAGGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR CAA 90 bp ATGAAGTCTGCTAAACAGCAAGAAGCCTTCAACCTACCAACTAGCCAGCAGCCACCTCGCAAAGGCTTTTaGTCAGATTTTCCTTTGGGG +
Preference number: 5 (lower is better)
Translates to: MKSAKQQEAFNLPTSQQPPRKGF*SDFPLG
Trigger: CCCCAAAGGAAAATCTGACAAAAAGCCTTTGCGAGG...TGGCTGCTGGCTAGTTGGTAGGTTGAAGGCTTCTTGCTGTTTAGCAGACTTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR CAA 90 bp ACATCATTCAACGCATCCCGTCACAGAGACCATCCTGCCAGCAAGGACTTCTACTTGTCAGATTTTCCTTaGGGGATGACAGATGAAGTA +
Preference number: 5 (lower is better)
Translates to: TSFNASRHRDHPASKDFYLSDFP*GMTDEV
Trigger: TACTTCATCTGTCATCCCCAAAGGAAAATCTGACAA...GTAGAAGTCCTTGCTGGCAGGATGGTCTCTGTGACGGGATGCGTTGAATGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101801.8
ENSMUST00000206575.2
CDS-3UTR CAA 90 bp CACCTCTCCTTGGCCAGTCACTGTGAAAGTGTGCGTAAGGCAATTGAGTTGAGGTTGTCAGATTTTCCTTaGGGGATGACAGATGAAGTA +
Preference number: 5 (lower is better)
Translates to: HLSLASHCESVRKAIELRLSDFP*GMTDEV
Trigger: TACTTCATCTGTCATCCCCAAAGGAAAATCTGACAA...CCTCAACTCAATTGCCTTACGCACACTTTCACAGTGACTGGCCAAGGAGAGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR CAA 90 bp TGGCTGTCTTGTCTAGAGTGTGGCCTAATGGCAATGTCTATATCTCATGCTGACCCTCGCAAAGGCTTTTaGTCAGATTTTCCTTTGGGG +
Preference number: 5 (lower is better)
Translates to: WLSCLECGLMAMSISHADPRKGF*SDFPLG
Trigger: CCCCAAAGGAAAATCTGACAAAAAGCCTTTGCGAGG...GTCAGCATGAGATATAGACATTGCCATTAGGCCACACTCTAGACAAGACAGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR CAA 90 bp AGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCTTTATGAAGTCTGCTAAAGTAACTTCTGCCTTCTaGCATGCTGTCCCACATTTC +
Preference number: 5 (lower is better)
Translates to: RTSTPKYHHWAFFMKSAKVTSAF*HAVPHF
Trigger: GAAATGTGGGACAGCATGCAAGAAGGCAGAAGTTAC...TTTAGCAGACTTCATAAAGAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS-3UTR CAA 90 bp CATCCTGCCAGCAAGGACTTCTACCCCAAAGTATCATCACTGGGCCTTCTTTATTTGTCAGATTTTCCTTaGGGGATGACAGATGAAGTA +
Preference number: 5 (lower is better)
Translates to: HPASKDFYPKVSSLGLLYLSDFP*GMTDEV
Trigger: TACTTCATCTGTCATCCCCAAAGGAAAATCTGACAA...ATAAAGAAGGCCCAGTGATGATACTTTGGGGTAGAAGTCCTTGCTGGCAGGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000101801.8
ENSMUST00000206044.2
ENSMUST00000206575.2
CDS TCA 72 bp CAGGGAGCCCACGAGCATGGCGGCGCCCGCCGCCCCTaGCCTGTCACGTGCAGGAATCGCAGGCTCTCGGTC +
Preference number: 6 (lower is better)
Translates to: QGAHEHGGARRP*PVTCRNRRLSV
Trigger: GACCGAGAGCCTGCGATTCCTGCACGTGACAGGTCAGGGGCGGCGGGCGCCGCCATGCTCGTGGGCTCCCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205279.2