Pregenerated sensors for SELENOM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075702Ensembl transcript IDs: ENSMUST00000094469.6
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATTTCCGTTGCTTTGGAGACTGGCGTCGGCCCTCAGCAAGGGAGATaGTCCCGGGATACTGAGCGCTTCATTCTGTCTCCGGGGCGCTGG | + |
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Preference number: 1 (lower is better) Translates to: ISVALETGVGPQQGR*SRDTERFILSPGRW Trigger: CCAGCGCCCCGGAGACAGAATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCCGACGCCAGTCTCCAAAGCAACGGAAAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| 3UTR TCA 72 bp | CGTCGGCCCTCAGCAAGGGAGATGCTCCCGGGATACTaGGCGCTTCATTCTGTCTCCGGGGCGCTGGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: RRPSAREMLPGY*ALHSVSGALAG Trigger: CCCTGCCAGCGCCCCGGAGACAGAATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCCGACG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| 3UTR GCA 72 bp | GCTTTGGAGACTGGCGTCGGCCCTCAGCAAGGGAGATaGTCCCGGGATACTGAGCGCTTCATTCTGTCTCCG | + |
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Preference number: 3 (lower is better) Translates to: ALETGVGPQQGR*SRDTERFILSP Trigger: CGGAGACAGAATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCCGACGCCAGTCTCCAAAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR CCA 90 bp | CTCAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCATTCTGTCTCCGGGGCTCTCCACCCGCCCCCTaGCCAGGCCTCGAAGACGGT | + |
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Preference number: 4 (lower is better) Translates to: LSKGDAPGILSASFCLRGSPPAP*PGLEDG Trigger: ACCGTCTTCGAGGCCTGGCCAGGGGGCGGGTGGAGA...GCCCCGGAGACAGAATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR GCA 90 bp | AGACTGGCGTCGGCCCTCAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCACTTCCGGCGCCGACTTaGGGTAGAAGCCGAGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: RLASALSKGDAPGILSASLPAPT*GRSRAP Trigger: AGGAGCTCGGCTTCTACCGCAAGTCGGCGCCGGAAG...TGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCCGACGCCAGTCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR CCA 90 bp | CAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCATTCTGTCTCCGGGGCGCGGTGGTGGAGGTGGCTaGAGCCACAAGGGCTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: QQGRCSRDTERFILSPGRGGGGG*SHKGCK Trigger: CTTGCAGCCCTTGTGGCTCCAGCCACCTCCACCACC...GCGCCCCGGAGACAGAATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR CCA 90 bp | GCGTCGGCCCTCAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCATTCTGTCCGGTCGGTAGTTGGTaGTGGAGGTGGCTGGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: ASALSKGDAPGILSASFCPVGSW*WRWLEP Trigger: TGGCTCCAGCCACCTCCACCACCAACTACCGACCGG...ACAGAATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCCGACGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR GCA 90 bp | AGACTGGCGTCGGCCCTCAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCATCTGCCCCAGGGAGGTaGTTCATCACCAGGTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: RLASALSKGDAPGILSASSAPGR*FITRLW Trigger: CCACAACCTGGTGATGAAGCACCTCCCTGGGGCAGA...TGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCCGACGCCAGTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR GCA 90 bp | ACTGGCGTCGGCCCTCAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCATTCACGAGTTCGGGGTCTaGCCCAGGGAGGTGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: TGVGPQQGRCSRDTERFIHEFGV*PREVLH Trigger: ATGAAGCACCTCCCTGGGGCAGACCCCGAACTCGTG...AATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCCGACGCCAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR CCA 90 bp | GGCCCTCAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCATTCTGTCTCCGAGTTGGTGGTGGAGGTaGCTGGAGCCACAAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: GPQQGRCSRDTERFILSPSWWWR*LEPQGL Trigger: CAGCCCTTGTGGCTCCAGCCACCTCCACCACCAACT...CGGAGACAGAATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR CCA 90 bp | GGCGTCGGCCCTCAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCATTCTGGTCGGTAGTTGGTGGTaGAGGTGGCTGGAGCCACAA | + |
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Preference number: 4 (lower is better) Translates to: GVGPQQGRCSRDTERFILVGSWW*RWLEPQ Trigger: TTGTGGCTCCAGCCACCTCCACCACCAACTACCGAC...CAGAATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCCGACGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR CCA 90 bp | CAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCATTCTGTCTCCGGGGCGCAATCCGGTCGGTAGTTaGTGGTGGAGGTGGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: QQGRCSRDTERFILSPGRNPVGS*WWRWLE Trigger: CTCCAGCCACCTCCACCACCAACTACCGACCGGATT...GCGCCCCGGAGACAGAATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR CCA 90 bp | ACTGGCGTCGGCCCTCAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCATTTCGTCCCGGGTCATTTaGCTGAGTGGGATTCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: TGVGPQQGRCSRDTERFISSRVI*LSGIRS Trigger: AGAGCGAATCCCACTCAGCCAAATGACCCGGGACGA...AATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCCGACGCCAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS CCA 90 bp | GGCCTCGAAGACGGTTCCAATCCGGTCGGTAGTTGGTGGTGGAGGTaGCTGGAGCCACAAGGGCTGCAAGAAGCAGCAGCAGCGACGGCG | + |
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Preference number: 5 (lower is better) Translates to: GLEDGSNPVGSWWWR*LEPQGLQEAAAATA Trigger: CGCCGTCGCTGCTGCTGCTTCTTGCAGCCCTTGTGGCTCCAGCCACCTCCACCACCAACTACCGACCGGATTGGAACCGTCTTCGAGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS CCA 90 bp | GCCCCCTGGCCAGGCCTCGAAGACGGTTCCAATCCGGTCGGTAGTTaGTGGTGGAGGTGGCTGGAGCCACAAGGGCTGCAAGAAGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: APWPGLEDGSNPVGS*WWRWLEPQGLQEAA Trigger: TGCTGCTTCTTGCAGCCCTTGTGGCTCCAGCCACCTCCACCACCAACTACCGACCGGATTGGAACCGTCTTCGAGGCCTGGCCAGGGGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS CCA 90 bp | TCGAAGACGGTTCCAATCCGGTCGGTAGTTGGTGGTGGAGGTGGCTaGAGCCACAAGGGCTGCAAGAAGCAGCAGCAGCGACGGCGGCGA | + |
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Preference number: 5 (lower is better) Translates to: SKTVPIRSVVGGGGG*SHKGCKKQQQRRRR Trigger: TCGCCGCCGTCGCTGCTGCTGCTTCTTGCAGCCCTTGTGGCTCCAGCCACCTCCACCACCAACTACCGACCGGATTGGAACCGTCTTCGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS CCA 90 bp | TGGCCAGGCCTCGAAGACGGTTCCAATCCGGTCGGTAGTTGGTGGTaGAGGTGGCTGGAGCCACAAGGGCTGCAAGAAGCAGCAGCAGCG | + |
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Preference number: 5 (lower is better) Translates to: WPGLEDGSNPVGSWW*RWLEPQGLQEAAAA Trigger: CGCTGCTGCTGCTTCTTGCAGCCCTTGTGGCTCCAGCCACCTCCACCACCAACTACCGACCGGATTGGAACCGTCTTCGAGGCCTGGCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS-3UTR CAA 90 bp | GGCGTCGGCCCTCAGCAAGGGAGATGCTCCCGGGATACTGAGCGCTTCATTCTGCTCGTCCCGGGTCATTaGGCTGAGTGGGATTCGCTC | + |
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Preference number: 5 (lower is better) Translates to: GVGPQQGRCSRDTERFILLVPGH*AEWDSL Trigger: GAGCGAATCCCACTCAGCCAAATGACCCGGGACGAG...CAGAATGAAGCGCTCAGTATCCCGGGAGCATCTCCCTTGCTGAGGGCCGACGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS TCA 90 bp | GGGTCTGCCCCAGGGAGGTGCTTCATCACCAGGTTGTGGTACAGTTaGATGTCCTCGGTGACAAAGGCCTTCACCTCCTTTAGGCGATTC | + |
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Preference number: 5 (lower is better) Translates to: GSAPGRCFITRLWYS*MSSVTKAFTSFRRF Trigger: GAATCGCCTAAAGGAGGTGAAGGCCTTTGTCACCGAGGACATTCAACTGTACCACAACCTGGTGATGAAGCACCTCCCTGGGGCAGACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS TCA 90 bp | GGAGGTGCTTCATCACCAGGTTGTGGTACAGTTGAATGTCCTCGGTaGCAAAGGCCTTCACCTCCTTTAGGCGATTCAACTGTCATCCTC | + |
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Preference number: 5 (lower is better) Translates to: GGASSPGCGTVECPR*QRPSPPLGDSTVIL Trigger: GAGGATGACAGTTGAATCGCCTAAAGGAGGTGAAGGCCTTTGTCACCGAGGACATTCAACTGTACCACAACCTGGTGATGAAGCACCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS CCA 72 bp | TCAACTGTCATCCTCCACAGGTCTCCACCCGCCCCCTaGCCAGGCCTCGAAGACGGTTCCAATCCGGTCGGT | + |
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Preference number: 6 (lower is better) Translates to: STVILHRSPPAP*PGLEDGSNPVG Trigger: ACCGACCGGATTGGAACCGTCTTCGAGGCCTGGCCAGGGGGCGGGTGGAGACCTGTGGAGGATGACAGTTGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS CCA 72 bp | CCAGGCCTCGAAGACGGTTCCAATCCGGTCGGTAGTTaGTGGTGGAGGTGGCTGGAGCCACAAGGGCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: PGLEDGSNPVGS*WWRWLEPQGLQ Trigger: TTGCAGCCCTTGTGGCTCCAGCCACCTCCACCACCAACTACCGACCGGATTGGAACCGTCTTCGAGGCCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS CAA 72 bp | CCCAGGGAGGTGCTTCATCACCAGGTTGTGGTACAGTaGAATGTCCTCGGTGACAAAGGCCTTCACCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: PREVLHHQVVVQ*NVLGDKGLHLL Trigger: AAGGAGGTGAAGGCCTTTGTCACCGAGGACATTCAACTGTACCACAACCTGGTGATGAAGCACCTCCCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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| CDS TCA 72 bp | CCAGGGAGGTGCTTCATCACCAGGTTGTGGTACAGTTaGATGTCCTCGGTGACAAAGGCCTTCACCTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: PGRCFITRLWYS*MSSVTKAFTSF Trigger: AAAGGAGGTGAAGGCCTTTGTCACCGAGGACATTCAACTGTACCACAACCTGGTGATGAAGCACCTCCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094469.6 |
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