RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SELENOK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042682

Ensembl transcript IDs: ENSMUST00000112268.4, ENSMUST00000223998.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp ACATGCGTAACCTTAGTACCCCGGAGGCAGGCAGGCAGCGCTCAGGCTCCAGTTTACAACGTAACAAGTTaGGCAAGCACTGAGAACAAG +
Preference number: 2 (lower is better)
Translates to: TCVTLVPRRQAGSAQAPVYNVTS*ASTENK
Trigger: CTTGTTCTCAGTGCTTGCTCAACTTGTTACGTTGTA...AACTGGAGCCTGAGCGCTGCCTGCCTGCCTCCGGGGTACTAAGGTTACGCATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR CAA 90 bp CAGGCAGCGCTCAGGCTCCAGTTCAAGGCCAGCCTGGGCTATAGTTaGCTTTTGTTAGTTTTTCAGAACTTAGAAGTCCCTGGGAAGAGG +
Preference number: 2 (lower is better)
Translates to: QAALRLQFKASLGYS*LLLVFQNLEVPGKR
Trigger: CCTCTTCCCAGGGACTTCTAAGTTCTGAAAAACTAACAAAAGCAAACTATAGCCCAGGCTGGCCTTGAACTGGAGCCTGAGCGCTGCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR CAA 90 bp TTTGGACATACACCATCTTCTCCTGCACGAGCCGCTCTTCACCGCTaGATGGCTTCCTTCTACACGTGTGTATGTCTAGTTGTCTGCTTC +
Preference number: 2 (lower is better)
Translates to: FGHTPSSPARAALHR*MASFYTCVCLVVCF
Trigger: GAAGCAGACAACTAGACATACACACGTGTAGAAGGAAGCCATCAAGCGGTGAAGAGCGGCTCGTGCAGGAGAAGATGGTGTATGTCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112268.4
ENSMUST00000223998.2
3UTR CAA 90 bp GCGCTCAGGCTCCAGTTCAAGGCCAGCCTGGGCTATAGTTTGCTTTaGTTAGTTTTTCAGAACTTAGAAGTCCCTGGGAAGAGGAACCTC +
Preference number: 2 (lower is better)
Translates to: ALRLQFKASLGYSLL*LVFQNLEVPGKRNL
Trigger: GAGGTTCCTCTTCCCAGGGACTTCTAAGTTCTGAAAAACTAACAAAAGCAAACTATAGCCCAGGCTGGCCTTGAACTGGAGCCTGAGCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR-3UTR CCA 90 bp GAGAACAAGCCAGTAAGCAGTGTTCCCCATGGTCTCTGCCCTAACTTCCCTCCGCCAGGACTAAATACATaGCCTTTATTTCTTCCGGAT +
Preference number: 2 (lower is better)
Translates to: ENKPVSSVPHGLCPNFPPPGLNT*PLFLPD
Trigger: ATCCGGAAGAAATAAAGGCCATGTATTTAGTCCTGG...CGGAGGGAAGTTAGGGCAGAGACCATGGGGAACACTGCTTACTGGCTTGTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR CAA 90 bp GTTAGTTTTTCAGAACTTAGAAGTCCCTGGGAAGAGGAACCTCAGTaGAGAAGATGCCTTTATCACACAGCCTATAGAGAAGTCTGTAGG +
Preference number: 2 (lower is better)
Translates to: VSFSELRSPWEEEPQ*RRCLYHTAYREVCR
Trigger: CCTACAGACTTCTCTATAGGCTGTGTGATAAAGGCATCTTCTCAACTGAGGTTCCTCTTCCCAGGGACTTCTAAGTTCTGAAAAACTAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR-3UTR CAA 90 bp ACATGCGTAACCTTAGTACCCCGGAGGCAGGCAGGCAGCGCTCAGGCTCCAGTTCAGAGCAATCCTTGTTaGGACATACACCATCTTCTC +
Preference number: 3 (lower is better)
Translates to: TCVTLVPRRQAGSAQAPVQSNPC*DIHHLL
Trigger: GAGAAGATGGTGTATGTCCAAACAAGGATTGCTCTG...AACTGGAGCCTGAGCGCTGCCTGCCTGCCTCCGGGGTACTAAGGTTACGCATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR CCA 72 bp GTTCCCCATGGTCTCTGCCCTAACTTCCCTCCGCGATaGACTGTGAGCTATAAGATAGCAAAAACAGAAACA +
Preference number: 3 (lower is better)
Translates to: VPHGLCPNFPPR*TVSYKIAKTET
Trigger: TGTTTCTGTTTTTGCTATCTTATAGCTCACAGTCCATCGCGGAGGGAAGTTAGGGCAGAGACCATGGGGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR TCA 72 bp CCTGAAGGTGGTCTTGGGTTGTACAACGTAACAAGTTaGGCAAGCACTGAGAACAAGCCAGTAAGCAGTGTT +
Preference number: 3 (lower is better)
Translates to: PEGGLGLYNVTS*ASTENKPVSSV
Trigger: AACACTGCTTACTGGCTTGTTCTCAGTGCTTGCTCAACTTGTTACGTTGTACAACCCAAGACCACCTTCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR TCA 72 bp CAGAACTTAGAAGTCCCTGGGAAGAGGAACCTCAGTTaGGAAGATGCCTTTATCACACAGCCTATAGAGAAG +
Preference number: 3 (lower is better)
Translates to: QNLEVPGKRNLS*EDAFITQPIEK
Trigger: CTTCTCTATAGGCTGTGTGATAAAGGCATCTTCTCAACTGAGGTTCCTCTTCCCAGGGACTTCTAAGTTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR CCA 72 bp AATAAAGACAGCAGTGAAGTCCATGGGTTTCAAGACTaGGGAGCATACAGTCAGTCATTTCAAGCTCATTTC +
Preference number: 3 (lower is better)
Translates to: NKDSSEVHGFQD*GAYSQSFQAHF
Trigger: GAAATGAGCTTGAAATGACTGACTGTATGCTCCCCAGTCTTGAAACCCATGGACTTCACTGCTGTCTTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
CDS-3UTR TCA 90 bp GTTTCAAGACTGGGGAGCATACAGTCAGTCATTTCAAGCTCATTTCTGATGACTACTCTCCATGGGGACTaGTTCCTGCTGTCCAACACC +
Preference number: 4 (lower is better)
Translates to: VSRLGSIQSVISSSFLMTTLHGD*FLLSNT
Trigger: GGTGTTGGACAGCAGGAATCAGTCCCCATGGAGAGT...AGTCATCAGAAATGAGCTTGAAATGACTGACTGTATGCTCCCCAGTCTTGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
CDS-3UTR TCA 90 bp GTTTCAAGACTGGGGAGCATACAGTCAGTCATTTCAAGCTCATTTCTGATGACTGGCCACGAAGGTGACTaGTCCTACCCATTCTTCGTG +
Preference number: 4 (lower is better)
Translates to: VSRLGSIQSVISSSFLMTGHEGD*SYPFFV
Trigger: CACGAAGAATGGGTAGGATCAGTCACCTTCGTGGCC...AGTCATCAGAAATGAGCTTGAAATGACTGACTGTATGCTCCCCAGTCTTGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR CAA 72 bp CTCCAGTTCAAGGCCAGCCTGGGCTATAGTTTGCTTTaGTTAGTTTTTCAGAACTTAGAAGTCCCTGGGAAG +
Preference number: 4 (lower is better)
Translates to: LQFKASLGYSLL*LVFQNLEVPGK
Trigger: CTTCCCAGGGACTTCTAAGTTCTGAAAAACTAACAAAAGCAAACTATAGCCCAGGCTGGCCTTGAACTGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4
3UTR CAA 72 bp TCAGAACTTAGAAGTCCCTGGGAAGAGGAACCTCAGTaGAGAAGATGCCTTTATCACACAGCCTATAGAGAA +
Preference number: 4 (lower is better)
Translates to: SELRSPWEEEPQ*RRCLYHTAYRE
Trigger: TTCTCTATAGGCTGTGTGATAAAGGCATCTTCTCAACTGAGGTTCCTCTTCCCAGGGACTTCTAAGTTCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112268.4