Pregenerated sensors for SELENOH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076437Ensembl transcript IDs: ENSMUST00000102646.4, ENSMUST00000102647.11, ENSMUST00000117299.10, ENSMUST00000189636.8, ENSMUST00000189988.3
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCTGCCTCACAACTGAACCATCACTTCTGGTGAGGAAGAAACTATaGCTTCAGGTGCATAGCTTAAGTTTGGCCATGCACCATCATAAA | + |
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Preference number: 1 (lower is better) Translates to: GCLTTEPSLLVRKKL*LQVHSLSLAMHHHK Trigger: TTTATGATGGTGCATGGCCAAACTTAAGCTATGCACCTGAAGCCATAGTTTCTTCCTCACCAGAAGTGATGGTTCAGTTGTGAGGCAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| 3UTR TCA 90 bp | CAGGAGTTCTACAATTTAGCTCCTCTTCGAAAATCCCAAATCCCATaGAAAATACACCGAAATGGTAAGGAGACGTTCCCTGTCTATCCC | + |
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Preference number: 1 (lower is better) Translates to: QEFYNLAPLRKSQIP*KIHRNGKETFPVYP Trigger: GGGATAGACAGGGAACGTCTCCTTACCATTTCGGTGTATTTTTCATGGGATTTGGGATTTTCGAAGAGGAGCTAAATTGTAGAACTCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| 3UTR-3UTR TCA 90 bp | GAGGGCTGCCTCACAACTGAACCATCACTTCTGGTGAGGAAGAAACTATGGCTTAACATCTCCAGGGACTaGAAGCTCAACATGAGGACT | + |
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Preference number: 2 (lower is better) Translates to: EGCLTTEPSLLVRKKLWLNISRD*KLNMRT Trigger: AGTCCTCATGTTGAGCTTTCAGTCCCTGGAGATGTT...AAGCCATAGTTTCTTCCTCACCAGAAGTGATGGTTCAGTTGTGAGGCAGCCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117299.10 |
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| 3UTR-3UTR TCA 90 bp | CACCAGAGGTGGAAAACTGAATTAGCAAACAAAACTTGCCTGTGCCCTCAGGCTATGCAAACCTCAACATaGGGACTCTTTCCCAACCTC | + |
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Preference number: 2 (lower is better) Translates to: HQRWKTELANKTCLCPQAMQTST*GLFPNL Trigger: GAGGTTGGGAAAGAGTCCTCATGTTGAGGTTTGCAT...AGCCTGAGGGCACAGGCAAGTTTTGTTTGCTAATTCAGTTTTCCACCTCTGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| 3UTR-3UTR TCA 90 bp | TTGTTTGGGGGTCGGGAGTGTTATCAGCAGGAGTTCTACAATTTAGCTCCTCTTAAATCCCAAATCCCATaGAAAATACACCGAAATGGT | + |
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Preference number: 2 (lower is better) Translates to: LFGGRECYQQEFYNLAPLKSQIP*KIHRNG Trigger: ACCATTTCGGTGTATTTTTCATGGGATTTGGGATTT...AAGAGGAGCTAAATTGTAGAACTCCTGCTGATAACACTCCCGACCCCCAAACAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| 3UTR GCA 72 bp | TCCCTGTCTATCCCAGTGTGCATGCCCTGGTCACGATaGAAACCTCAACATGAGGACTCTTTCCCAACCTCT | + |
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Preference number: 3 (lower is better) Translates to: SLSIPVCMPWSR*KPQHEDSFPTS Trigger: AGAGGTTGGGAAAGAGTCCTCATGTTGAGGTTTGCATCGTGACCAGGGCATGCACACTGGGATAGACAGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| 3UTR GCA 72 bp | GAAATGGTAAGGAGACGTTCCCTGTCTATCCCAGTGTaGATGCCCTGGTCACGATGCAAACCTCAACATGAG | + |
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Preference number: 3 (lower is better) Translates to: EMVRRRSLSIPV*MPWSRCKPQHE Trigger: CTCATGTTGAGGTTTGCATCGTGACCAGGGCATGCACACTGGGATAGACAGGGAACGTCTCCTTACCATTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| 3UTR TCA 72 bp | CTTTTACAATGTCTTGCTGGAGGGCTGCCTCACAACTaGACCATCACTTCTGGTGAGGAAGAAACTATGGCT | + |
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Preference number: 3 (lower is better) Translates to: LLQCLAGGLPHN*TITSGEEETMA Trigger: AGCCATAGTTTCTTCCTCACCAGAAGTGATGGTTCAGTTGTGAGGCAGCCCTCCAGCAAGACATTGTAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| 3UTR TCA 72 bp | TACAATTTAGCTCCTCTTCGAAAATCCCAAATCCCATaGAAAATACACCGAAATGGTAAGGAGACGTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: YNLAPLRKSQIP*KIHRNGKETFP Trigger: AGGGAACGTCTCCTTACCATTTCGGTGTATTTTTCATGGGATTTGGGATTTTCGAAGAGGAGCTAAATTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| CDS-3UTR GCA 90 bp | CACCGAAATGGTAAGGAGACGTTCCCTGTCTATCCCAGTGTGCATGCCCTGGTCTCTGGGGCCTCCAGTTaGAGAGCCTGGCTCAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: HRNGKETFPVYPSVHALVSGASS*RAWLKA Trigger: TGCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGA...GACCAGGGCATGCACACTGGGATAGACAGGGAACGTCTCCTTACCATTTCGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| CDS-3UTR GCA 90 bp | CACCAGAGGTGGAAAACTGAATTAGCAAACAAAACTTGCCTGTGCCCTCAGGCTGCGTCACCTCGAAGCTaGCCCTCCGCGGTTTGGACG | + |
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Preference number: 4 (lower is better) Translates to: HQRWKTELANKTCLCPQAASPRS*PSAVWT Trigger: CGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGACGC...AGCCTGAGGGCACAGGCAAGTTTTGTTTGCTAATTCAGTTTTCCACCTCTGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| CDS-3UTR GCA 90 bp | AAACACTTTTACAATGTCTTGCTGGAGGGCTGCCTCACAACTGAACCATCACTTGCGTCACCTCGAAGCTaGCCCTCCGCGGTTTGGACG | + |
|
Preference number: 4 (lower is better) Translates to: KHFYNVLLEGCLTTEPSLASPRS*PSAVWT Trigger: CGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGACGC...AAGTGATGGTTCAGTTGTGAGGCAGCCCTCCAGCAAGACATTGTAAAAGTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| CDS-3UTR GCA 90 bp | TCACTTCTGGTGAGGAAGAAACTATGGCTTCAGGTGCATAGCTTAAGTTTGGCCTCTGGGGCCTCCAGTTaGAGAGCCTGGCTCAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: SLLVRKKLWLQVHSLSLASGASS*RAWLKA Trigger: TGCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGA...GGCCAAACTTAAGCTATGCACCTGAAGCCATAGTTTCTTCCTCACCAGAAGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| CDS-3UTR GCA 90 bp | AAACTATGGCTTCAGGTGCATAGCTTAAGTTTGGCCATGCACCATCATAAATGCGCGTCACCTCGAAGCTaGCCCTCCGCGGTTTGGACG | + |
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Preference number: 4 (lower is better) Translates to: KLWLQVHSLSLAMHHHKCASPRS*PSAVWT Trigger: CGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGACGC...GCATTTATGATGGTGCATGGCCAAACTTAAGCTATGCACCTGAAGCCATAGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| CDS-3UTR GCA 90 bp | CCATCACTTCTGGTGAGGAAGAAACTATGGCTTCAGGTGCATAGCTTAAGTTTGTCTGGGGCCTCCAGTTaGAGAGCCTGGCTCAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: PSLLVRKKLWLQVHSLSLSGASS*RAWLKA Trigger: TGCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGA...CAAACTTAAGCTATGCACCTGAAGCCATAGTTTCTTCCTCACCAGAAGTGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| CDS-3UTR GCA 90 bp | GAAAAATACACCGAAATGGTAAGGAGACGTTCCCTGTCTATCCCAGTGTGCATGTTGGACGGGTTCACTTaGACAGGTAGCTCTGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: EKYTEMVRRRSLSIPVCMLDGFT*TGSSGA Trigger: GGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAA...CATGCACACTGGGATAGACAGGGAACGTCTCCTTACCATTTCGGTGTATTTTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| CDS-3UTR GCA 90 bp | AGGAAGAAACTATGGCTTCAGGTGCATAGCTTAAGTTTGGCCATGCACCATCATTTGGACGGGTTCACTTaGACAGGTAGCTCTGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: RKKLWLQVHSLSLAMHHHLDGFT*TGSSGA Trigger: GGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAA...ATGATGGTGCATGGCCAAACTTAAGCTATGCACCTGAAGCCATAGTTTCTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| CDS-3UTR CCA 90 bp | CTATGGCTTCAGGTGCATAGCTTAAGTTTGGCCATGCACCATCATAAATGCTTCAAATTTGAGCTTTCGTaGAGGGCCCTTCTTAATACC | + |
|
Preference number: 4 (lower is better) Translates to: LWLQVHSLSLAMHHHKCFKFELS*RALLNT Trigger: GGTATTAAGAAGGGCCCTCCACGAAAGCTCAAATTT...GAAGCATTTATGATGGTGCATGGCCAAACTTAAGCTATGCACCTGAAGCCATAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| CDS-3UTR CCA 90 bp | AGGAAGAAACTATGGCTTCAGGTGCATAGCTTAAGTTTGGCCATGCACCATCATAAATTTGAGCTTTCGTaGAGGGCCCTTCTTAATACC | + |
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Preference number: 4 (lower is better) Translates to: RKKLWLQVHSLSLAMHHHKFELS*RALLNT Trigger: GGTATTAAGAAGGGCCCTCCACGAAAGCTCAAATTT...ATGATGGTGCATGGCCAAACTTAAGCTATGCACCTGAAGCCATAGTTTCTTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| 3UTR CAA 72 bp | AGGAAGAAACTATGGCTTCAGGTGCATAGCTTAAGTTaGGCCATGCACCATCATAAATGCTTCAACATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: RKKLWLQVHSLS*AMHHHKCFNIS Trigger: GGAGATGTTGAAGCATTTATGATGGTGCATGGCCAAACTTAAGCTATGCACCTGAAGCCATAGTTTCTTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| CDS-3UTR CCA 90 bp | AACTCAAGAGAGTACAAATGGCTCTTAGATTTGTTTGGGGGTCGGGAGTGTTATAAATTTGAGCTTTCGTaGAGGGCCCTTCTTAATACC | + |
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Preference number: 4 (lower is better) Translates to: NSREYKWLLDLFGGRECYKFELS*RALLNT Trigger: GGTATTAAGAAGGGCCCTCCACGAAAGCTCAAATTT...ATAACACTCCCGACCCCCAAACAAATCTAAGAGCCATTTGTACTCTCTTGAGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| CDS CCA 90 bp | TGTCCGAGCGCAGCAGCGTCACCTCGAAGCTGCCCCTCCGCGGTTTaGACGGGTTCACTTGCACAGGTAGCTCTGGGGCCTCCAGTTGCA | + |
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Preference number: 5 (lower is better) Translates to: CPSAAASPRSCPSAV*TGSLAQVALGPPVA Trigger: TGCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCTCGGACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 |
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| CDS GCA 90 bp | GGTTTGGACGGGTTCACTTGCACAGGTAGCTCTGGGGCCTCCAGTTaGAGAGCCTGGCTCAAGGCAGCAGCATGGCGGCCGTACACGCGT | + |
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Preference number: 5 (lower is better) Translates to: GLDGFTCTGSSGASS*RAWLKAAAWRPYTR Trigger: ACGCGTGTACGGCCGCCATGCTGCTGCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 ENSMUST00000189988.3 |
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| CDS GCA 90 bp | AGCGTCACCTCGAAGCTGCCCCTCCGCGGTTTGGACGGGTTCACTTaGACAGGTAGCTCTGGGGCCTCCAGTTGCAGAGCCTGGCTCAAG | + |
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Preference number: 5 (lower is better) Translates to: SVTSKLPLRGLDGFT*TGSSGASSCRAWLK Trigger: CTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGACGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 |
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| CDS CCA 90 bp | GGGTTCACTTGCACAGGTAGCTCTGGGGCCTCCAGTTGCAGAGCCTaGCTCAAGGCAGCAGCATGGCGGCCGTACACGCGTCAGCTCGTA | + |
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Preference number: 5 (lower is better) Translates to: GFTCTGSSGASSCRA*LKAAAWRPYTRQLV Trigger: TACGAGCTGACGCGTGTACGGCCGCCATGCTGCTGCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 ENSMUST00000189988.3 |
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| CDS GCA 90 bp | GTTCAACACGGCTGTTGTCCGAGCGCAGCAGCGTCACCTCGAAGCTaGCCCTCCGCGGTTTGGACGGGTTCACTTGCACAGGTAGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: VQHGCCPSAAASPRS*PSAVWTGSLAQVAL Trigger: CAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCTCGGACAACAGCCGTGTTGAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 |
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| CDS CCA 90 bp | AGCTCTGGGGCCTCCAGTTGCAGAGCCTGGCTCAAGGCAGCAGCATaGCGGCCGTACACGCGTCAGCTCGTACAATGCTCAATGACCACG | + |
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Preference number: 5 (lower is better) Translates to: SSGASSCRAWLKAAA*RPYTRQLVQCSMTT Trigger: CGTGGTCATTGAGCATTGTACGAGCTGACGCGTGTACGGCCGCCATGCTGCTGCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 ENSMUST00000189988.3 |
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| CDS GCA 90 bp | TTCAACACCTCGAAGCTGCCCCTCCGCGGTTTGGACGGGTTCACTTaGACAGGTAGCTCTGGGGCCTCCAGTTGCAGAGCCTGGCTCAAG | + |
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Preference number: 5 (lower is better) Translates to: FNTSKLPLRGLDGFT*TGSSGASSCRAWLK Trigger: CTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGTTGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000189988.3 |
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| CDS-3UTR CAA 90 bp | CACCGAAATGGTAAGGAGACGTTCCCTGTCTATCCCAGTGTGCATGCCCTGGTCCTCTGGGGCCTCCAGTaGCAGAGCCTGGCTCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: HRNGKETFPVYPSVHALVLWGLQ*QSLAQG Trigger: GCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAG...GACCAGGGCATGCACACTGGGATAGACAGGGAACGTCTCCTTACCATTTCGGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102646.4 |
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| CDS CCA 90 bp | ATACCAGTCCAGAGTTCAACACCTCGAAGCTGCCCCTCCGCGGTTTaGACGGGTTCACTTGCACAGGTAGCTCTGGGGCCTCCAGTTGCA | + |
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Preference number: 5 (lower is better) Translates to: IPVQSSTPRSCPSAV*TGSLAQVALGPPVA Trigger: TGCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGTTGAACTCTGGACTGGTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000189988.3 |
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| CDS-3UTR CAA 90 bp | GGCTGCCTCACAACTGAACCATCACTTCTGGTGAGGAAGAAACTATGGCTTCAGCTCTGGGGCCTCCAGTaGCAGAGCCTGGCTCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: GCLTTEPSLLVRKKLWLQLWGLQ*QSLAQG Trigger: GCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAG...CTGAAGCCATAGTTTCTTCCTCACCAGAAGTGATGGTTCAGTTGTGAGGCAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| CDS-3UTR CAA 90 bp | GTGCATAGCTTAAGTTTGGCCATGCACCATCATAAATGCTTCAACATCTCCAGGCTCTGGGGCCTCCAGTaGCAGAGCCTGGCTCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: VHSLSLAMHHHKCFNISRLWGLQ*QSLAQG Trigger: GCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAG...CCTGGAGATGTTGAAGCATTTATGATGGTGCATGGCCAAACTTAAGCTATGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| CDS CCA 90 bp | CAATTCTTCAACCACCTCTTGAGGCTCAGGAAATTTGAGCTTTCGTaGAGGGCCCTTCTTAATACCAGTCCAGAGTTCAACACGGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: QFFNHLLRLRKFELS*RALLNTSPEFNTAV Trigger: AACAGCCGTGTTGAACTCTGGACTGGTATTAAGAAGGGCCCTCCACGAAAGCTCAAATTTCCTGAGCCTCAAGAGGTGGTTGAAGAATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 |
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| CDS CCA 90 bp | CAATTCTTCAACCACCTCTTGAGGCTCAGGAAATTTGAGCTTTCGTaGAGGGCCCTTCTTAATACCAGTCCAGAGTTCAACACCTCGAAG | + |
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Preference number: 5 (lower is better) Translates to: QFFNHLLRLRKFELS*RALLNTSPEFNTSK Trigger: CTTCGAGGTGTTGAACTCTGGACTGGTATTAAGAAGGGCCCTCCACGAAAGCTCAAATTTCCTGAGCCTCAAGAGGTGGTTGAAGAATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189988.3 |
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| CDS TCA 90 bp | TGCACCATCATAAATGCTTCAACATCTCCAGGGACTGAAAGCTCTTaGGGCTCAGGAAATTTGAGCTTTCGTGGAGGGCCCTTCTTAATA | + |
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Preference number: 5 (lower is better) Translates to: CTIINASTSPGTESS*GSGNLSFRGGPFLI Trigger: TATTAAGAAGGGCCCTCCACGAAAGCTCAAATTTCCTGAGCCTCAAGAGCTTTCAGTCCCTGGAGATGTTGAAGCATTTATGATGGTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189636.8 |
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| CDS CAA 72 bp | CGCAGCAGCGTCACCTCGAAGCTGCCCCTCCGCGGTTaGGACGGGTTCACTTGCACAGGTAGCTCTGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: RSSVTSKLPLRG*DGFTCTGSSGA Trigger: GGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 |
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| CDS GCA 72 bp | GGGTTCACTTGCACAGGTAGCTCTGGGGCCTCCAGTTaGAGAGCCTGGCTCAAGGCAGCAGCATGGCGGCCG | + |
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Preference number: 6 (lower is better) Translates to: GFTCTGSSGASS*RAWLKAAAWRP Trigger: CGGCCGCCATGCTGCTGCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 ENSMUST00000189988.3 |
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| CDS GCA 72 bp | GGCTGTTGTCCGAGCGCAGCAGCGTCACCTCGAAGCTaGCCCTCCGCGGTTTGGACGGGTTCACTTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: GCCPSAAASPRS*PSAVWTGSLAQ Trigger: CTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCTCGGACAACAGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 |
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| CDS CCA 72 bp | TGCACAGGTAGCTCTGGGGCCTCCAGTTGCAGAGCCTaGCTCAAGGCAGCAGCATGGCGGCCGTACACGCGT | + |
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Preference number: 6 (lower is better) Translates to: CTGSSGASSCRA*LKAAAWRPYTR Trigger: ACGCGTGTACGGCCGCCATGCTGCTGCCTTGAGCCAGGCTCTGCAACTGGAGGCCCCAGAGCTACCTGTGCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 ENSMUST00000189988.3 |
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| CDS CCA 72 bp | GCAGCAGCGTCACCTCGAAGCTGCCCCTCCGCGGTTTaGACGGGTTCACTTGCACAGGTAGCTCTGGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: AAASPRSCPSAV*TGSLAQVALGP Trigger: AGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGACGCTGCTGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 |
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| CDS CAA 90 bp | TTGTCCGAGCGCAGCAGCGTCACCTCGAAGCTGCCCCTCCGCGGTTaGGACGGGTTCACTTGCACAGGTAGCTCTGGGGCCTCCAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: LSERSSVTSKLPLRG*DGFTCTGSSGASSC Trigger: GCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCTCGGACAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 |
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| CDS GCA 72 bp | TCGAAGCTGCCCCTCCGCGGTTTGGACGGGTTCACTTaGACAGGTAGCTCTGGGGCCTCCAGTTGCAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: SKLPLRGLDGFT*TGSSGASSCRA Trigger: GGCTCTGCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 ENSMUST00000189988.3 |
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| CDS CCA 72 bp | GCCTCCAGTTGCAGAGCCTGGCTCAAGGCAGCAGCATaGCGGCCGTACACGCGTCAGCTCGTACAATGCTCA | + |
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Preference number: 6 (lower is better) Translates to: ASSCRAWLKAAA*RPYTRQLVQCS Trigger: TGAGCATTGTACGAGCTGACGCGTGTACGGCCGCCATGCTGCTGCCTTGAGCCAGGCTCTGCAACTGGAGGC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 ENSMUST00000189988.3 |
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| CDS CCA 72 bp | CAGAGTTCAACACCTCGAAGCTGCCCCTCCGCGGTTTaGACGGGTTCACTTGCACAGGTAGCTCTGGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: QSSTPRSCPSAV*TGSLAQVALGP Trigger: AGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGTTGAACTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000189988.3 |
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| CDS CAA 90 bp | AATACCAGTCCAGAGTTCAACACCTCGAAGCTGCCCCTCCGCGGTTaGGACGGGTTCACTTGCACAGGTAGCTCTGGGGCCTCCAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: NTSPEFNTSKLPLRG*DGFTCTGSSGASSC Trigger: GCAACTGGAGGCCCCAGAGCTACCTGTGCAAGTGAACCCGTCCAAACCGCGGAGGGGCAGCTTCGAGGTGTTGAACTCTGGACTGGTATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000189988.3 |
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| CDS CAA 72 bp | CCCTTCTTAATACCAGTCCAGAGTTCAACACGGCTGTaGTCCGAGCGCAGCAGCGTCACCTCGAAGCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: PFLIPVQSSTRL*SERSSVTSKLP Trigger: GGGCAGCTTCGAGGTGACGCTGCTGCGCTCGGACAACAGCCGTGTTGAACTCTGGACTGGTATTAAGAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189636.8 |
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| CDS TCA 72 bp | ATAAATGCTTCAACATCTCCAGGGACTGAAAGCTCTTaGGGCTCAGGAAATTTGAGCTTTCGTGGAGGGCCC | + |
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Preference number: 6 (lower is better) Translates to: INASTSPGTESS*GSGNLSFRGGP Trigger: GGGCCCTCCACGAAAGCTCAAATTTCCTGAGCCTCAAGAGCTTTCAGTCCCTGGAGATGTTGAAGCATTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189636.8 |
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| CDS CCA 72 bp | AACCACCTCTTGAGGCTCAGGAAATTTGAGCTTTCGTaGAGGGCCCTTCTTAATACCAGTCCAGAGTTCAAC | + |
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Preference number: 6 (lower is better) Translates to: NHLLRLRKFELS*RALLNTSPEFN Trigger: GTTGAACTCTGGACTGGTATTAAGAAGGGCCCTCCACGAAAGCTCAAATTTCCTGAGCCTCAAGAGGTGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 ENSMUST00000189988.3 |
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| CDS TCA 72 bp | TATGAAAGGTACTTCTTCAATTCTTCAACCACCTCTTaGGGCTCAGGAAATTTGAGCTTTCGTGGAGGGCCC | + |
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Preference number: 6 (lower is better) Translates to: YERYFFNSSTTS*GSGNLSFRGGP Trigger: GGGCCCTCCACGAAAGCTCAAATTTCCTGAGCCTCAAGAGGTGGTTGAAGAATTGAAGAAGTACCTTTCATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102646.4 ENSMUST00000102647.11 ENSMUST00000117299.10 |
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