Pregenerated sensors for SELENOF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037072Ensembl transcript IDs: ENSMUST00000082437.11, ENSMUST00000106211.3, ENSMUST00000151086.3
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCAATTTCCGACAATGTACACTCACTCTGCTGTACAACCCACCGTaGTATAGTGAGAAACTTAGTGTGGGAGCACAGGCTCACAGTCTA | + |
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Preference number: 1 (lower is better) Translates to: FNFRQCTLTLLYNPP*YSEKLSVGAQAHSL Trigger: TAGACTGTGAGCCTGTGCTCCCACACTAAGTTTCTCACTATACCACGGTGGGTTGTACAGCAGAGTGAGTGTACATTGTCGGAAATTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| 3UTR TCA 90 bp | AAACCTGTATGTGGCACATTCATTACAAACTACAAATACTTGTACTaGAAAGAAAGCTGGGCATGCCAAGAGGCTCTGGGGTGGGTGCTG | + |
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Preference number: 1 (lower is better) Translates to: KPVCGTFITNYKYLY*KESWACQEALGWVL Trigger: CAGCACCCACCCCAGAGCCTCTTGGCATGCCCAGCTTTCTTTTCAGTACAAGTATTTGTAGTTTGTAATGAATGTGCCACATACAGGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| 3UTR-3UTR CCA 90 bp | GAAAGCTGGGCATGCCAAGAGGCTCTGGGGTGGGTGCTGCTGAGGCGCAGGGCAGATCCTGATATATTATaGACTGTGGTGCTACTTCAG | + |
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Preference number: 2 (lower is better) Translates to: ESWACQEALGWVLLRRRADPDIL*TVVLLQ Trigger: CTGAAGTAGCACCACAGTCCATAATATATCAGGATC...TGCCCTGCGCCTCAGCAGCACCCACCCCAGAGCCTCTTGGCATGCCCAGCTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| 3UTR-3UTR TCA 90 bp | CTTCAGAACACAGCTACAACTTGTGACCAGTTCCATGTGAAGGCAATGTGTTTGACTTCAGCTTTCTCGTaGGGACCCCAGCATGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: LQNTATTCDQFHVKAMCLTSAFS*GPQHGP Trigger: GGGGCCATGCTGGGGTCCTCACGAGAAAGCTGAAGT...CAAACACATTGCCTTCACATGGAACTGGTCACAAGTTGTAGCTGTGTTCTGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| 3UTR-3UTR CCA 90 bp | CAGCTACTTCAGAACACAGCTACAACTTGTGACCAGTTCCATGTGAAGGCAATGGTGAGGACCCCAGCATaGCCCCTTACCTTGATCTGT | + |
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Preference number: 2 (lower is better) Translates to: QLLQNTATTCDQFHVKAMVRTPA*PLTLIC Trigger: ACAGATCAAGGTAAGGGGCCATGCTGGGGTCCTCAC...CATTGCCTTCACATGGAACTGGTCACAAGTTGTAGCTGTGTTCTGAAGTAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| 3UTR CAA 90 bp | TGTGACTTCAGCTTTCTCGTGAGGACCCCAGCATGGCCCCTTACCTaGATCTGTAGACCTCTGAAGAGTTTGGGTTTATCACTTCTGACA | + |
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Preference number: 2 (lower is better) Translates to: CDFSFLVRTPAWPLT*ICRPLKSLGLSLLT Trigger: TGTCAGAAGTGATAAACCCAAACTCTTCAGAGGTCTACAGATCAAGGTAAGGGGCCATGCTGGGGTCCTCACGAGAAAGCTGAAGTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| 3UTR-3UTR CCA 90 bp | AGATCTTCAGTCTGTTCCATAATAATAAGCTACAAAACCTGTATGTGGCACATTCAAGAGGCTCTGGGGTaGGTGCTGCTGAGGCGCAGG | + |
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Preference number: 2 (lower is better) Translates to: RSSVCSIIISYKTCMWHIQEALG*VLLRRR Trigger: CCTGCGCCTCAGCAGCACCCACCCCAGAGCCTCTTG...AATGTGCCACATACAGGTTTTGTAGCTTATTATTATGGAACAGACTGAAGATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| 3UTR-3UTR GCA 90 bp | CTTCAGAACACAGCTACAACTTGTGACCAGTTCCATGTGAAGGCAATGTGTTTGAATGTACACTCACTCTaGTGTACAACCCACCGTGGT | + |
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Preference number: 2 (lower is better) Translates to: LQNTATTCDQFHVKAMCLNVHSL*CTTHRG Trigger: ACCACGGTGGGTTGTACAGCAGAGTGAGTGTACATT...CAAACACATTGCCTTCACATGGAACTGGTCACAAGTTGTAGCTGTGTTCTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| 3UTR-3UTR TCA 90 bp | CTACAAATACTTGTACTGAAAAGAAAGCTGGGCATGCCAAGAGGCTCTGGGGTGTACAAATACTTGTACTaGAAAGAAAGCTGGGCATGC | + |
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Preference number: 2 (lower is better) Translates to: LQILVLKRKLGMPRGSGVYKYLY*KESWAC Trigger: GCATGCCCAGCTTTCTTTTCAGTACAAGTATTTGTA...CACCCCAGAGCCTCTTGGCATGCCCAGCTTTCTTTTCAGTACAAGTATTTGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| 3UTR-3UTR CCA 90 bp | CTACTTCAGAACACAGCTACAACTTGTGACCAGTTCCATGTGAAGGCAATGTGTCTGTACAACCCACCGTaGTATAGTGAGAAACTTAGT | + |
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Preference number: 2 (lower is better) Translates to: LLQNTATTCDQFHVKAMCLYNPP*YSEKLS Trigger: ACTAAGTTTCTCACTATACCACGGTGGGTTGTACAG...ACACATTGCCTTCACATGGAACTGGTCACAAGTTGTAGCTGTGTTCTGAAGTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| 3UTR-3UTR GCA 90 bp | GACCAATGTAAGCATGCAAAACTAAGTTATTGTCTAGGTGCTGTGATAATTCATCTAAGCATGTTTATATaGGTTCCAACTTCTCGCTCA | + |
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Preference number: 2 (lower is better) Translates to: DQCKHAKLSYCLGAVIIHLSMFI*VPTSRS Trigger: TGAGCGAGAAGTTGGAACGCATATAAACATGCTTAG...ATGAATTATCACAGCACCTAGACAATAACTTAGTTTTGCATGCTTACATTGGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106211.3 |
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| 3UTR CCA 72 bp | CGACAATGTACACTCACTCTGCTGTACAACCCACCGTaGTATAGTGAGAAACTTAGTGTGGGAGCACAGGCT | + |
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Preference number: 3 (lower is better) Translates to: RQCTLTLLYNPP*YSEKLSVGAQA Trigger: AGCCTGTGCTCCCACACTAAGTTTCTCACTATACCACGGTGGGTTGTACAGCAGAGTGAGTGTACATTGTCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| 3UTR-3UTR CAA 90 bp | TGGTATAGTGAGAAACTTAGTGTGGGAGCACAGGCTCACAGTCTAGGGAAACATGCATGGCCCCTTACCTaGATCTGTAGACCTCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: WYSEKLSVGAQAHSLGKHAWPLT*ICRPLK Trigger: CTTCAGAGGTCTACAGATCAAGGTAAGGGGCCATGC...ATGTTTCCCTAGACTGTGAGCCTGTGCTCCCACACTAAGTTTCTCACTATACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| 3UTR TCA 72 bp | TGTGGCTCAGCTACTTCAGAACACAGCTACAACTTGTaGCCAGTTCCATGTGAAGGCAATGTGTTTGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: CGSATSEHSYNL*PVPCEGNVFAE Trigger: CTCAGCAAACACATTGCCTTCACATGGAACTGGTCACAAGTTGTAGCTGTGTTCTGAAGTAGCTGAGCCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| 3UTR CCA 72 bp | CTGGGTTCCTTAAGCTTGCCAGATCCTGATATATTATaGACTGTGGTGCTACTTCAGCTTCTTGTCAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: LGSLSLPDPDIL*TVVLLQLLVRR Trigger: TCTTCTGACAAGAAGCTGAAGTAGCACCACAGTCCATAATATATCAGGATCTGGCAAGCTTAAGGAACCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| 3UTR-3UTR CAA 90 bp | CATAATTACCCAGATGCCTCCTTACAAAGCGTTTCACTGGTGAGAGCAACAAGTCTGGGTTCCTTAAGCTaGCCAGATCCTGATATATTA | + |
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Preference number: 3 (lower is better) Translates to: HNYPDASLQSVSLVRATSLGSLS*PDPDIL Trigger: TAATATATCAGGATCTGGCAAGCTTAAGGAACCCAG...ACTTGTTGCTCTCACCAGTGAAACGCTTTGTAAGGAGGCATCTGGGTAATTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| 3UTR-3UTR CAA 90 bp | GTCAATTACTTTCAAAGAGCACACAGCAAGGGAGGTGTCTCCTTTATCCACTTCCTGGGTTCCTTAAGCTaGCCAGATCCTGATATATTA | + |
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Preference number: 3 (lower is better) Translates to: VNYFQRAHSKGGVSFIHFLGSLS*PDPDIL Trigger: TAATATATCAGGATCTGGCAAGCTTAAGGAACCCAG...GAAGTGGATAAAGGAGACACCTCCCTTGCTGTGTGCTCTTTGAAAGTAATTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR GCA 90 bp | AAGCTGGGCATGCCAAGAGGCTCTGGGGTGGGTGCTGCTGAGGCGCAGGGCATCTTCAAGGATGGCTCCTaGATACAGCTTTTTGGTTTC | + |
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Preference number: 4 (lower is better) Translates to: KLGMPRGSGVGAAEAQGIFKDGS*IQLFGF Trigger: GAAACCAAAAAGCTGTATGCAGGAGCCATCCTTGAA...GATGCCCTGCGCCTCAGCAGCACCCACCCCAGAGCCTCTTGGCATGCCCAGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR CCA 90 bp | GGGTGGGTGCTGCTGAGGCGCAGGGCATCCTACGTGTTTGTAGTTTTCTGTCAACGCAGACTTCAAGGATaGCTCCTGCATACAGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: GWVLLRRRASYVFVVFCQRRLQG*LLHTAF Trigger: AAAAGCTGTATGCAGGAGCCATCCTTGAAGTCTGCG...TTGACAGAAAACTACAAACACGTAGGATGCCCTGCGCCTCAGCAGCACCCACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| 3UTR CAA 72 bp | AGCTTTCTCGTGAGGACCCCAGCATGGCCCCTTACCTaGATCTGTAGACCTCTGAAGAGTTTGGGTTTATCA | + |
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Preference number: 4 (lower is better) Translates to: SFLVRTPAWPLT*ICRPLKSLGLS Trigger: TGATAAACCCAAACTCTTCAGAGGTCTACAGATCAAGGTAAGGGGCCATGCTGGGGTCCTCACGAGAAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| CDS-3UTR TCA 90 bp | GCTGCTGAGGCGCAGGGCATCCTACGTGTTTGTAGTTTTCTGTCAATTACTTTCAATTGTGCTTCTTCCTaGCAGCACCCTCTGCAAACA | + |
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Preference number: 4 (lower is better) Translates to: AAEAQGILRVCSFLSITFNCASS*QHPLQT Trigger: TGTTTGCAGAGGGTGCTGTCAGGAAGAAGCACAATT...GAAAGTAATTGACAGAAAACTACAAACACGTAGGATGCCCTGCGCCTCAGCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR GCA 90 bp | CTTAGTGTGGGAGCACAGGCTCACAGTCTAGGGAAACATGTGACTTCAGCTTTCTTCAAGGATGGCTCCTaGATACAGCTTTTTGGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LSVGAQAHSLGKHVTSAFFKDGS*IQLFGF Trigger: GAAACCAAAAAGCTGTATGCAGGAGCCATCCTTGAA...GAAAGCTGAAGTCACATGTTTCCCTAGACTGTGAGCCTGTGCTCCCACACTAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| CDS-3UTR CCA 90 bp | GGGTGGGTGCTGCTGAGGCGCAGGGCATCCTACGTGTTTGTAGTTTTCTGTCAACTGCATACAGCTTTTTaGTTTCAAATTGTGCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: GWVLLRRRASYVFVVFCQLHTAF*FQIVLL Trigger: AAGAAGCACAATTTGAAACCAAAAAGCTGTATGCAG...TTGACAGAAAACTACAAACACGTAGGATGCCCTGCGCCTCAGCAGCACCCACCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR TCA 90 bp | CCCCTTACCTTGATCTGTAGACCTCTGAAGAGTTTGGGTTTATCACTTCTGACAAATTGTGCTTCTTCCTaGCAGCACCCTCTGCAAACA | + |
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Preference number: 4 (lower is better) Translates to: PLTLICRPLKSLGLSLLTNCASS*QHPLQT Trigger: TGTTTGCAGAGGGTGCTGTCAGGAAGAAGCACAATT...TGTCAGAAGTGATAAACCCAAACTCTTCAGAGGTCTACAGATCAAGGTAAGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| CDS-3UTR GCA 90 bp | AATTACCCAGATGCCTCCTTACAAAGCGTTTCACTGGTGAGAGCAACAAGTGTAAGAAACCCAACTCTCTaGATGCCTCTGACGCAAACT | + |
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Preference number: 4 (lower is better) Translates to: NYPDASLQSVSLVRATSVRNPTL*MPLTQT Trigger: AGTTTGCGTCAGAGGCATGCAGAGAGTTGGGTTTCT...TACACTTGTTGCTCTCACCAGTGAAACGCTTTGTAAGGAGGCATCTGGGTAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR GCA 90 bp | GTCAATTACTTTCAAAGAGCACACAGCAAGGGAGGTGTCTCCTTTATCCACTTCAGAAACCCAACTCTCTaGATGCCTCTGACGCAAACT | + |
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Preference number: 4 (lower is better) Translates to: VNYFQRAHSKGGVSFIHFRNPTL*MPLTQT Trigger: AGTTTGCGTCAGAGGCATGCAGAGAGTTGGGTTTCT...GAAGTGGATAAAGGAGACACCTCCCTTGCTGTGTGCTCTTTGAAAGTAATTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR GCA 90 bp | CTACAAATACTTGTACTGAAAAGAAAGCTGGGCATGCCAAGAGGCTCTGGGGTGTTTGGTTTCAAATTGTaGTTCTTCCTGACAGCACCC | + |
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Preference number: 4 (lower is better) Translates to: LQILVLKRKLGMPRGSGVFGFKL*FFLTAP Trigger: GGGTGCTGTCAGGAAGAAGCACAATTTGAAACCAAA...CACCCCAGAGCCTCTTGGCATGCCCAGCTTTCTTTTCAGTACAAGTATTTGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR CCA 90 bp | TCCTTAAGCTTGCCAGATCCTGATATATTATGGACTGTGGTGCTACTTCAGCTTCGCAGACTTCAAGGATaGCTCCTGCATACAGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: SLSLPDPDILWTVVLLQLRRLQG*LLHTAF Trigger: AAAAGCTGTATGCAGGAGCCATCCTTGAAGTCTGCG...AAGCTGAAGTAGCACCACAGTCCATAATATATCAGGATCTGGCAAGCTTAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR TCA 90 bp | AAGAGCACACAGCAAGGGAGGTGTCTCCTTTATCCACTTCCTCTATTTAAAATTAATTGTGCTTCTTCCTaGCAGCACCCTCTGCAAACA | + |
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Preference number: 4 (lower is better) Translates to: KSTQQGRCLLYPLPLFKINCASS*QHPLQT Trigger: TGTTTGCAGAGGGTGCTGTCAGGAAGAAGCACAATT...AATTTTAAATAGAGGAAGTGGATAAAGGAGACACCTCCCTTGCTGTGTGCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR GCA 90 bp | GCACATTCATTACAAACTACAAATACTTGTACTGAAAAGAAAGCTGGGCATGCCAGCTGCAGAGCAAGTTaGTGGAGAAACCCAACTCTC | + |
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Preference number: 4 (lower is better) Translates to: AHSLQTTNTCTEKKAGHASCRAS*WRNPTL Trigger: GAGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGCT...GGCATGCCCAGCTTTCTTTTCAGTACAAGTATTTGTAGTTTGTAATGAATGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR GCA 90 bp | AAATTCGTACTGCAGATCTTCAGTCTGTTCCATAATAATAAGCTACAAAACCTGAGCTGCAGAGCAAGTTaGTGGAGAAACCCAACTCTC | + |
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Preference number: 4 (lower is better) Translates to: KFVLQIFSLFHNNKLQNLSCRAS*WRNPTL Trigger: GAGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGCT...CAGGTTTTGTAGCTTATTATTATGGAACAGACTGAAGATCTGCAGTACGAATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR GCA 90 bp | ACACAGCAAGGGAGGTGTCTCCTTTATCCACTTCCTCTATTTAAAATTCTGTTGTTCAAGGATGGCTCCTaGATACAGCTTTTTGGTTTC | + |
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Preference number: 4 (lower is better) Translates to: TQQGRCLLYPLPLFKILLFKDGS*IQLFGF Trigger: GAAACCAAAAAGCTGTATGCAGGAGCCATCCTTGAA...CAACAGAATTTTAAATAGAGGAAGTGGATAAAGGAGACACCTCCCTTGCTGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR CCA 90 bp | CTTCAGAACACAGCTACAACTTGTGACCAGTTCCATGTGAAGGCAATGTGTTTGCTGCATACAGCTTTTTaGTTTCAAATTGTGCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: LQNTATTCDQFHVKAMCLLHTAF*FQIVLL Trigger: AAGAAGCACAATTTGAAACCAAAAAGCTGTATGCAG...CAAACACATTGCCTTCACATGGAACTGGTCACAAGTTGTAGCTGTGTTCTGAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| CDS-3UTR TCA 90 bp | GATGACCAATGTAAGCATGCAAAACTAAGTTATTGTCTAGGTGCTGTGATAATTTGTCTGTGTTCCACTTaGGGATGCTTAGTTCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: DDQCKHAKLSYCLGAVIICLCST*GCLVLQ Trigger: CTGAAGAACTAAGCATCCTCAAGTGGAACACAGACA...AATTATCACAGCACCTAGACAATAACTTAGTTTTGCATGCTTACATTGGTCATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082437.11 |
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| CDS-3UTR CCA 90 bp | AAATTCGTACTGCAGATCTTCAGTCTGTTCCATAATAATAAGCTACAAAACCTGCTGCATACAGCTTTTTaGTTTCAAATTGTGCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: KFVLQIFSLFHNNKLQNLLHTAF*FQIVLL Trigger: AAGAAGCACAATTTGAAACCAAAAAGCTGTATGCAG...CAGGTTTTGTAGCTTATTATTATGGAACAGACTGAAGATCTGCAGTACGAATTT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS TCA 90 bp | CTGCATGCCTCTGACGCAAACTCTGCCCCCAGAGCAGACGCCGCTTaGAACGCAGTCGCCAGCAGCAAGCGCAGCCCCAGAGCGGGCCGC | + |
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Preference number: 5 (lower is better) Translates to: LHASDANSAPRADAA*NAVASSKRSPRAGR Trigger: GCGGCCCGCTCTGGGGCTGCGCTTGCTGCTGGCGACTGCGTTTCAAGCGGCGTCTGCTCTGGGGGCAGAGTTTGCGTCAGAGGCATGCAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS TCA 90 bp | GCTGCAGAGCAAGTTGCTGGAGAAACCCAACTCTCTGCATGCCTCTaGCGCAAACTCTGCCCCCAGAGCAGACGCCGCTTGAAACGCAGT | + |
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Preference number: 5 (lower is better) Translates to: AAEQVAGETQLSACL*RKLCPQSRRRLKRS Trigger: ACTGCGTTTCAAGCGGCGTCTGCTCTGGGGGCAGAGTTTGCGTCAGAGGCATGCAGAGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS GCA 90 bp | GATCGCAAGAGCTGCAGAGCAAGTTGCTGGAGAAACCCAACTCTCTaGATGCCTCTGACGCAAACTCTGCCCCCAGAGCAGACGCCGCTT | + |
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Preference number: 5 (lower is better) Translates to: DRKSCRASCWRNPTL*MPLTQTLPPEQTPL Trigger: AAGCGGCGTCTGCTCTGGGGGCAGAGTTTGCGTCAGAGGCATGCAGAGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGCTCTTGCGATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR CAA 90 bp | AAAAGAAAGCTGGGCATGCCAAGAGGCTCTGGGGTGGGTGCTGCTGAGGCGCAGCTTTTTGGTTTCAAATaGTGCTTCTTCCTGACAGCA | + |
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Preference number: 5 (lower is better) Translates to: KRKLGMPRGSGVGAAEAQLFGFK*CFFLTA Trigger: TGCTGTCAGGAAGAAGCACAATTTGAAACCAAAAAG...CTGCGCCTCAGCAGCACCCACCCCAGAGCCTCTTGGCATGCCCAGCTTTCTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS CCA 90 bp | AAATTGTGCTTCTTCCTGACAGCACCCTCTGCAAACAGGATCCAGTaGGAGCAGATTAAACTGTCCAAGAAGATCGCAAGAGCTGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: KLCFFLTAPSANRIQ*EQIKLSKKIARAAE Trigger: CTCTGCAGCTCTTGCGATCTTCTTGGACAGTTTAATCTGCTCCCACTGGATCCTGTTTGCAGAGGGTGCTGTCAGGAAGAAGCACAATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 ENSMUST00000151086.3 |
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| CDS-3UTR CAA 90 bp | TTACTTTCAAAGAGCACACAGCAAGGGAGGTGTCTCCTTTATCCACTTCCTCTAGAGCTGCAGAGCAAGTaGCTGGAGAAACCCAACTCT | + |
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Preference number: 5 (lower is better) Translates to: LLSKSTQQGRCLLYPLPLELQSK*LEKPNS Trigger: AGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGCTC...TAGAGGAAGTGGATAAAGGAGACACCTCCCTTGCTGTGTGCTCTTTGAAAGTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS TCA 90 bp | ATGGCTCCTGCATACAGCTTTTTGGTTTCAAATTGTGCTTCTTCCTaGCAGCACCCTCTGCAAACAGGATCCAGTGGGAGCAGATTAAAC | + |
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Preference number: 5 (lower is better) Translates to: MAPAYSFLVSNCASS*QHPLQTGSSGSRLN Trigger: GTTTAATCTGCTCCCACTGGATCCTGTTTGCAGAGGGTGCTGTCAGGAAGAAGCACAATTTGAAACCAAAAAGCTGTATGCAGGAGCCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 ENSMUST00000151086.3 |
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| CDS-3UTR CAA 90 bp | GCTGCTGAGGCGCAGGGCATCCTACGTGTTTGTAGTTTTCTGTCAATTACTTTCCTGTCTGTGTTCCACTaGAGGATGCTTAGTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: AAEAQGILRVCSFLSITFLSVFH*RMLSSS Trigger: TGAAGAACTAAGCATCCTCAAGTGGAACACAGACAG...GAAAGTAATTGACAGAAAACTACAAACACGTAGGATGCCCTGCGCCTCAGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082437.11 |
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| CDS-3UTR CAA 90 bp | CAGCTACTTCAGAACACAGCTACAACTTGTGACCAGTTCCATGTGAAGGCAATGCCTGCATACAGCTTTTaGGTTTCAAATTGTGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: QLLQNTATTCDQFHVKAMPAYSF*VSNCAS Trigger: AGAAGCACAATTTGAAACCAAAAAGCTGTATGCAGG...CATTGCCTTCACATGGAACTGGTCACAAGTTGTAGCTGTGTTCTGAAGTAGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| CDS-3UTR CAA 90 bp | TCAATTACTTTCAAAGAGCACACAGCAAGGGAGGTGTCTCCTTTATCCACTTCCAGACCTCTGAAGAGTTaGGGTTTATCACTTCTGACA | + |
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Preference number: 5 (lower is better) Translates to: SITFKEHTAREVSPLSTSRPLKS*GLSLLT Trigger: TGTCAGAAGTGATAAACCCAAACTCTTCAGAGGTCT...GGAAGTGGATAAAGGAGACACCTCCCTTGCTGTGTGCTCTTTGAAAGTAATTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082437.11 |
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| CDS-3UTR CAA 90 bp | TTACAAACTACAAATACTTGTACTGAAAAGAAAGCTGGGCATGCCAAGAGGCTCGAGCCTCGAACATACTaGATCTGTAGACCTCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: LQTTNTCTEKKAGHAKRLEPRTY*ICRPLK Trigger: CTTCAGAGGTCTACAGATCAAGTATGTTCGAGGCTC...GAGCCTCTTGGCATGCCCAGCTTTCTTTTCAGTACAAGTATTTGTAGTTTGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082437.11 |
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| CDS-3UTR CAA 90 bp | AGATCTTCAGTCTGTTCCATAATAATAAGCTACAAAACCTGTATGTGGCACATTGAGCTGCAGAGCAAGTaGCTGGAGAAACCCAACTCT | + |
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Preference number: 5 (lower is better) Translates to: RSSVCSIIISYKTCMWHIELQSK*LEKPNS Trigger: AGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGCTC...AATGTGCCACATACAGGTTTTGTAGCTTATTATTATGGAACAGACTGAAGATCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR CAA 90 bp | CTACTTCAGAACACAGCTACAACTTGTGACCAGTTCCATGTGAAGGCAATGTGTCTTTTTGGTTTCAAATaGTGCTTCTTCCTGACAGCA | + |
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Preference number: 5 (lower is better) Translates to: LLQNTATTCDQFHVKAMCLFGFK*CFFLTA Trigger: TGCTGTCAGGAAGAAGCACAATTTGAAACCAAAAAG...ACACATTGCCTTCACATGGAACTGGTCACAAGTTGTAGCTGTGTTCTGAAGTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151086.3 |
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| CDS-3UTR CAA 90 bp | TCCTTAAGCTTGCCAGATCCTGATATATTATGGACTGTGGTGCTACTTCAGCTTCCTGCATACAGCTTTTaGGTTTCAAATTGTGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SLSLPDPDILWTVVLLQLPAYSF*VSNCAS Trigger: AGAAGCACAATTTGAAACCAAAAAGCTGTATGCAGG...AAGCTGAAGTAGCACCACAGTCCATAATATATCAGGATCTGGCAAGCTTAAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR CAA 90 bp | GATGACCAATGTAAGCATGCAAAACTAAGTTATTGTCTAGGTGCTGTGATAATTTCAGCAATGTTCCCGTaGTCGTCCAAAAGCTTTAGT | + |
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Preference number: 5 (lower is better) Translates to: DDQCKHAKLSYCLGAVIISAMFP*SSKSFS Trigger: ACTAAAGCTTTTGGACGACAACGGGAACATTGCTGA...AATTATCACAGCACCTAGACAATAACTTAGTTTTGCATGCTTACATTGGTCATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR CAA 90 bp | TTCGTACTGCAGATCTTCAGTCTGTTCCATAATAATAAGCTACAAAACCTGTATTCAGCAATGTTCCCGTaGTCGTCCAAAAGCTTTAGT | + |
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Preference number: 5 (lower is better) Translates to: FVLQIFSLFHNNKLQNLYSAMFP*SSKSFS Trigger: ACTAAAGCTTTTGGACGACAACGGGAACATTGCTGA...ATACAGGTTTTGTAGCTTATTATTATGGAACAGACTGAAGATCTGCAGTACGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR CAA 90 bp | AGATCTTCAGTCTGTTCCATAATAATAAGCTACAAAACCTGTATGTGGCACATTCTTTTTGGTTTCAAATaGTGCTTCTTCCTGACAGCA | + |
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Preference number: 5 (lower is better) Translates to: RSSVCSIIISYKTCMWHILFGFK*CFFLTA Trigger: TGCTGTCAGGAAGAAGCACAATTTGAAACCAAAAAG...AATGTGCCACATACAGGTTTTGTAGCTTATTATTATGGAACAGACTGAAGATCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS-3UTR CAA 90 bp | AAATTCGTACTGCAGATCTTCAGTCTGTTCCATAATAATAAGCTACAAAACCTGCCTGCATACAGCTTTTaGGTTTCAAATTGTGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: KFVLQIFSLFHNNKLQNLPAYSF*VSNCAS Trigger: AGAAGCACAATTTGAAACCAAAAAGCTGTATGCAGG...CAGGTTTTGTAGCTTATTATTATGGAACAGACTGAAGATCTGCAGTACGAATTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS TCA 72 bp | CAAGTTGCTGGAGAAACCCAACTCTCTGCATGCCTCTaGCGCAAACTCTGCCCCCAGAGCAGACGCCGCTTG | + |
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Preference number: 6 (lower is better) Translates to: QVAGETQLSACL*RKLCPQSRRRL Trigger: CAAGCGGCGTCTGCTCTGGGGGCAGAGTTTGCGTCAGAGGCATGCAGAGAGTTGGGTTTCTCCAGCAACTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS CCA 72 bp | GTCCAAGAAGATCGCAAGAGCTGCAGAGCAAGTTGCTaGAGAAACCCAACTCTCTGCATGCCTCTGACGCAA | + |
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Preference number: 6 (lower is better) Translates to: VQEDRKSCRASC*RNPTLCMPLTQ Trigger: TTGCGTCAGAGGCATGCAGAGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGCTCTTGCGATCTTCTTGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS CAA 72 bp | AACTGTCCAAGAAGATCGCAAGAGCTGCAGAGCAAGTaGCTGGAGAAACCCAACTCTCTGCATGCCTCTGAC | + |
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Preference number: 6 (lower is better) Translates to: NCPRRSQELQSK*LEKPNSLHASD Trigger: GTCAGAGGCATGCAGAGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGCTCTTGCGATCTTCTTGGACAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS CAA 90 bp | AGCAGATTAAACTGTCCAAGAAGATCGCAAGAGCTGCAGAGCAAGTaGCTGGAGAAACCCAACTCTCTGCATGCCTCTGACGCAAACTCT | + |
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Preference number: 6 (lower is better) Translates to: SRLNCPRRSQELQSK*LEKPNSLHASDANS Trigger: AGAGTTTGCGTCAGAGGCATGCAGAGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGCTCTTGCGATCTTCTTGGACAGTTTAATCTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 |
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| CDS TCA 72 bp | GCATACAGCTTTTTGGTTTCAAATTGTGCTTCTTCCTaGCAGCACCCTCTGCAAACAGGATCCAGTGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: AYSFLVSNCASS*QHPLQTGSSGS Trigger: GCTCCCACTGGATCCTGTTTGCAGAGGGTGCTGTCAGGAAGAAGCACAATTTGAAACCAAAAAGCTGTATGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 ENSMUST00000151086.3 |
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| CDS CCA 72 bp | TTCTTCCTGACAGCACCCTCTGCAAACAGGATCCAGTaGGAGCAGATTAAACTGTCCAAGAAGATCGCAAGA | + |
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Preference number: 6 (lower is better) Translates to: FFLTAPSANRIQ*EQIKLSKKIAR Trigger: TCTTGCGATCTTCTTGGACAGTTTAATCTGCTCCCACTGGATCCTGTTTGCAGAGGGTGCTGTCAGGAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 ENSMUST00000151086.3 |
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| CDS CAA 90 bp | TCCAACTTCTCGCTCAGGAACTCTTCCACACTGTCTGTGTTCCACTaGAGGATGCTTAGTTCTTCAGCAATGTTCCCGTTGTCGTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: SNFSLRNSSTLSVFH*RMLSSSAMFPLSSK Trigger: TTTGGACGACAACGGGAACATTGCTGAAGAACTAAGCATCCTCAAGTGGAACACAGACAGTGTGGAAGAGTTCCTGAGCGAGAAGTTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082437.11 |
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| CDS GCA 72 bp | GATGGCTCCTGCATACAGCTTTTTGGTTTCAAATTGTaGTTCTTCCTGACAGCACCCTCTGCAAACAGGATC | + |
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Preference number: 6 (lower is better) Translates to: DGSCIQLFGFKL*FFLTAPSANRI Trigger: GATCCTGTTTGCAGAGGGTGCTGTCAGGAAGAAGCACAATTTGAAACCAAAAAGCTGTATGCAGGAGCCATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000082437.11 ENSMUST00000106211.3 ENSMUST00000151086.3 |
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