RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SELE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026582

Ensembl transcript IDs: ENSMUST00000027874.6

Found 151 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTGCTATTCCAGCTCGCGCTCTCCCCCGTCCATTCACTCTCTTTTaGAGAGAGCACCTCCACCTTCTGTGGCAGCATGTTCTTCATACT +
Preference number: 1 (lower is better)
Translates to: SAIPARALPRPFTLF*REHLHLLWQHVLHT
Trigger: AGTATGAAGAACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGAGCGCGAGCTGGAATAGCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
3UTR CAA 90 bp TTCTGCTATTCCAGCTCGCGCTCTCCCCCGTCCATTCACTCTCTTTaGAAGAGAGCACCTCCACCTTCTGTGGCAGCATGTTCTTCATAC +
Preference number: 2 (lower is better)
Translates to: FCYSSSRSPPSIHSL*KRAPPPSVAACSSY
Trigger: GTATGAAGAACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGAGCGCGAGCTGGAATAGCAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
3UTR-3UTR GCA 90 bp TGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGCAGAGACAGTTCATTTCCTaGTGTCTTCAGCTTATCATT +
Preference number: 2 (lower is better)
Translates to: WPCHSVLIHGVGIPVFKQRQFIS*CLQLII
Trigger: AATGATAAGCTGAAGACAGCAGGAAATGAACTGTCT...CTGCTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
3UTR TCA 72 bp CCAGCTCGCGCTCTCCCCCGTCCATTCACTCTCTTTTaGAGAGAGCACCTCCACCTTCTGTGGCAGCATGTT +
Preference number: 3 (lower is better)
Translates to: PARALPRPFTLF*REHLHLLWQHV
Trigger: AACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGAGCGCGAGCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
3UTR TCA 72 bp GCAATAAAACGCTGTTTCTGTTCCCAAATTCTAGCATaGCTAAGAGTCAGAATGGATTCTGCTATTCCAGCT +
Preference number: 3 (lower is better)
Translates to: AIKRCFCSQILA*LRVRMDSAIPA
Trigger: AGCTGGAATAGCAGAATCCATTCTGACTCTTAGTCATGCTAGAATTTGGGAACAGAAACAGCGTTTTATTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTACGGGTGGGGCTGACTaGGGCTTCACAGGTAGGCGG +
Preference number: 4 (lower is better)
Translates to: EGWPCHSVLIHGVGIPVFTGGAD*GFTGRR
Trigger: CCGCCTACCTGTGAAGCCCCAGTCAGCCCCACCCGT...AAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
3UTR CAA 72 bp TCCAGCTCGCGCTCTCCCCCGTCCATTCACTCTCTTTaGAAGAGAGCACCTCCACCTTCTGTGGCAGCATGT +
Preference number: 4 (lower is better)
Translates to: SSSRSPPSIHSL*KRAPPPSVAAC
Trigger: ACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGAGCGCGAGCTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGGGGCCGAACGGGTaGGAGCAGTTCAGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: EGWPCHSVLIHGVGIPVFKGPNG*EQFRLP
Trigger: TGGAAGCCTGAACTGCTCCCACCCGTTCGGCCCCTT...AAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp TCTCCCCCGTCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCATTGAGGAACATTTCCTaGTACCGTGGGCAGGGTGGG +
Preference number: 4 (lower is better)
Translates to: SPPSIHSLLKRAPPPSVALRNIS*YRGQGG
Trigger: CCCACCCTGCCCACGGTATCAGGAAATGTTCCTCAA...TGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp TCTCCCCCGTCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCAAGCGCGAGGCATTCATaGCTCCAGCAGTTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: SPPSIHSLLKRAPPPSVASARHS*LQQLLS
Trigger: TGAAAGCAACTGCTGGAGTCATGAATGCCTCGCGCT...TGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp TCTCCCCCGTCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCATTGCAAGTCACAGCTTaGTCACAGTTGGGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: SPPSIHSLLKRAPPPSVALQVTA*SQLGPR
Trigger: CCTGGGACCCAACTGTGAGCAAGCTGTGACTTGCAA...TGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp TGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGCAGCGGTGGTCTCCATGCTaGTGGGCAGGTAGCCCCTTT +
Preference number: 4 (lower is better)
Translates to: WPCHSVLIHGVGIPVFKQRWSPC*WAGSPF
Trigger: AAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCG...CTGCTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp TCTCCCCCGTCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCAGGTGTTCCTGTGGTTTaGAAGTCACAGCTTGCTCAC +
Preference number: 4 (lower is better)
Translates to: SPPSIHSLLKRAPPPSVAGVPVV*KSQLAH
Trigger: GTGAGCAAGCTGTGACTTGCAAACCACAGGAACACC...TGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp TCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCAGCATGTTCTTGTCCACTGCCCTTGTaGGCTGCATTCAACCTGCGC +
Preference number: 4 (lower is better)
Translates to: SIHSLLKRAPPPSVAACSCPLPL*AAFNLR
Trigger: GCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACA...AGAACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp TGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGCAGCAGCTTGCTCACAGTTaGGTCCCAGGAAGCCAGGGT +
Preference number: 4 (lower is better)
Translates to: WPCHSVLIHGVGIPVFKQQLAHS*VPGSQG
Trigger: ACCCTGGCTTCCTGGGACCCAACTGTGAGCAAGCTG...CTGCTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GAGTCGGGATCCCAGTTTTTAAGCAGGCAAGAGGAACCAGGATTCTGTAGACAGGCATTCAACCTGCGCTaGCCCCTGCAACGTGAAACT +
Preference number: 4 (lower is better)
Translates to: ESGSQFLSRQEEPGFCRQAFNLR*PLQRET
Trigger: AGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGC...CTGTCTACAGAATCCTGGTTCCTCTTGCCTGCTTAAAAACTGGGATCCCGACTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GAGTCGGGATCCCAGTTTTTAAGCAGGCAAGAGGAACCAGGATTCTGTAGACAGGGACATTGTACCACTTaGCAGGAGGGGACTTCCTGG +
Preference number: 4 (lower is better)
Translates to: ESGSQFLSRQEEPGFCRQGHCTT*QEGTSW
Trigger: CCAGGAAGTCCCCTCCTGCCAAGTGGTACAATGTCC...CTGTCTACAGAATCCTGGTTCCTCTTGCCTGCTTAAAAACTGGGATCCCGACTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp GAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGTTCTCCAGCTGTTaGGTGGCTGCAGCTCACAAA +
Preference number: 4 (lower is better)
Translates to: EGWPCHSVLIHGVGIPVFKFSSC*VAAAHK
Trigger: TTTGTGAGCTGCAGCCACTCAACAGCTGGAGAACTT...AAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp AGAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTCCACACAGTCAAACGTaGATGTCGTGTTCCATGGGT +
Preference number: 4 (lower is better)
Translates to: RGLALSLSFDPWSRDPSFPHSQT*MSCSMG
Trigger: ACCCATGGAACACGACATGCACGTTTGACTGTGTGG...AAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp CTGAGTCATTCTAGTAGAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTTCCTGCCGCAGAAAGTaGAACTACCAAGGGACGGGT +
Preference number: 4 (lower is better)
Translates to: LSHSSRGLALSLSFDPWSSCRRK*NYQGTG
Trigger: ACCCGTCCCTTGGTAGTTGCACTTTCTGCGGCAGGA...ACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCTACTAGAATGACTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTCACTGCAGGATGCATTaGTACACGAAGCTGTGTAGC +
Preference number: 4 (lower is better)
Translates to: EGWPCHSVLIHGVGIPVFHCRMH*YTKLCS
Trigger: GCTACACAGCTTCGTGTACCAATGCATCCTGCAGTG...AAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp CTGAGTCATTCTAGTAGAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTTCACATTCAACCACATaGCAGGCTGGAGCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: LSHSSRGLALSLSFDPWSSHSTT*QAGAGA
Trigger: TGCGCCTGCTCCAGCCTGCCATGTGGTTGAATGTGA...ACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCTACTAGAATGACTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTGACAGCTTTGCAGACTaGGATTTGTGGTGTCCACTG +
Preference number: 4 (lower is better)
Translates to: EGWPCHSVLIHGVGIPVFDSFAD*DLWCPL
Trigger: CAGTGGACACCACAAATCCCAGTCTGCAAAGCTGTC...AAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp AGAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTAAGCCCTCATTGCATTaGAAGGCACATGAGGACTTG +
Preference number: 4 (lower is better)
Translates to: RGLALSLSFDPWSRDPSFKPSLH*KAHEDL
Trigger: CAAGTCCTCATGTGCCTTTCAATGCAATGAGGGCTT...AAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp CTGAGTCATTCTAGTAGAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTGCACTCAAGTTGAGCTaGGCCATGCAAGCTAAAGCC +
Preference number: 4 (lower is better)
Translates to: LSHSSRGLALSLSFDPWSALKLS*AMQAKA
Trigger: GGCTTTAGCTTGCATGGCTCAGCTCAACTTGAGTGC...ACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCTACTAGAATGACTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp GAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTATGACCACTGCAGGATaGATTGGTACACGAAGCTGT +
Preference number: 4 (lower is better)
Translates to: EGWPCHSVLIHGVGIPVFMTTAG*IGTRSC
Trigger: ACAGCTTCGTGTACCAATGCATCCTGCAGTGGTCAT...AAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp TCTCCCCCGTCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCATCTCGTTATCCCAGATaGCAGATGAGGTACACTGTA +
Preference number: 4 (lower is better)
Translates to: SPPSIHSLLKRAPPPSVASRYPR*QMRYTV
Trigger: TACAGTGTACCTCATCTGGCATCTGGGATAACGAGA...TGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp GGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGCACACTGGACAGCTTTaGAGACTGGGATTTGTGGTG +
Preference number: 4 (lower is better)
Translates to: GWPCHSVLIHGVGIPVFKHTGQL*RLGFVV
Trigger: CACCACAAATCCCAGTCTGCAAAGCTGTCCAGTGTG...CTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GGATCTCATGCTGGCTTCAGTGCCAGGACACAGAACACAATGTTCAAGAATACTTGGTCTCCATGCTGCTaGGCAGGTAGCCCCTTTTAC +
Preference number: 4 (lower is better)
Translates to: GSHAGFSARTQNTMFKNTWSPCC*AGSPFY
Trigger: GTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCA...AGTATTCTTGAACATTGTGTTCTGTGTCCTGGCACTGAAGCCAGCATGAGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GAGTCGGGATCCCAGTTTTTAAGCAGGCAAGAGGAACCAGGATTCTGTAGACAGGATAAGGCTTCACACTaGACAGCTTTGCAGACTGGG +
Preference number: 4 (lower is better)
Translates to: ESGSQFLSRQEEPGFCRQDKASH*TALQTG
Trigger: CCCAGTCTGCAAAGCTGTCCAGTGTGAAGCCTTATC...CTGTCTACAGAATCCTGGTTCCTCTTGCCTGCTTAAAAACTGGGATCCCGACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
3UTR CAA 72 bp AAGAGGAAACTGAGTCATTCTAGTAGAGGGCTGGCCTaGTCACTCAGTTTTGATCCATGGAGTCGGGATCCC +
Preference number: 4 (lower is better)
Translates to: KRKLSHSSRGLA*SLSFDPWSRDP
Trigger: GGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCTACTAGAATGACTCAGTTTCCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp GGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGGTAGCTCCCAGGATTTaGGGAACATTTCCTGATACC +
Preference number: 4 (lower is better)
Translates to: GWPCHSVLIHGVGIPVFKVAPRI*GTFPDT
Trigger: GGTATCAGGAAATGTTCCTCAAATCCTGGGAGCTAC...CTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp AGAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTGCATTGAAAGGCACATaGGGACTTGTAGGTGAATTC +
Preference number: 4 (lower is better)
Translates to: RGLALSLSFDPWSRDPSFALKGT*GLVGEF
Trigger: GAATTCACCTACAAGTCCTCATGTGCCTTTCAATGC...AAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp AGAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTGCAACGTGAAACTCTaGTCACAGGTGAAGTTACAG +
Preference number: 4 (lower is better)
Translates to: RGLALSLSFDPWSRDPSFCNVKL*SQVKLQ
Trigger: CTGTAACTTCACCTGTGAGCAGAGTTTCACGTTGCA...AAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp TGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGCAGCATTTCATGTTGCCCTaGTGTGGCGCAGATAAGGCT +
Preference number: 4 (lower is better)
Translates to: WPCHSVLIHGVGIPVFKQHFMLP*CGADKA
Trigger: AGCCTTATCTGCGCCACAGCAGGGCAACATGAAATG...CTGCTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp GAGTCGGGATCCCAGTTTTTAAGCAGGCAAGAGGAACCAGGATTCTGTAGACAGACTTTCCCTGAGATGTaGACTCAAGTTGAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: ESGSQFLSRQEEPGFCRQTFPEM*TQVELS
Trigger: GCTCAGCTCAACTTGAGTGCACATCTCAGGGAAAGT...CTGTCTACAGAATCCTGGTTCCTCTTGCCTGCTTAAAAACTGGGATCCCGACTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGCAACTGGACCCATTTTaGAAAGGTCCAGAAGCACTG +
Preference number: 4 (lower is better)
Translates to: GWPCHSVLIHGVGIPVFKQLDPF*KGPEAL
Trigger: CAGTGCTTCTGGACCTTTCCAAAATGGGTCCAGTTG...CTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
3UTR CAA 72 bp GTCATTCTAGTAGAGGGCTGGCCTTGTCACTCAGTTTaGATCCATGGAGTCGGGATCCCAGTTTTTAAGCAG +
Preference number: 4 (lower is better)
Translates to: VILVEGWPCHSV*IHGVGIPVFKQ
Trigger: CTGCTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCTACTAGAATGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp TTTGAAGAGAGCACCTCCACCTTCTGTGGCAGCATGTTCTTCATACTGTCACTACCTCTTGGACCACACTaGAGTCTTCTTGATCCCTTC +
Preference number: 4 (lower is better)
Translates to: FEESTSTFCGSMFFILSLPLGPH*SLLDPF
Trigger: GAAGGGATCAAGAAGACTTCAGTGTGGTCCAAGAGG...TAGTGACAGTATGAAGAACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp TTTGAAGAGAGCACCTCCACCTTCTGTGGCAGCATGTTCTTCATACTGTCACTAGATGTGCACTCAAGTTaGGCTGAGCCATGCAAGCTA +
Preference number: 4 (lower is better)
Translates to: FEESTSTFCGSMFFILSLDVHSS*AEPCKL
Trigger: TAGCTTGCATGGCTCAGCTCAACTTGAGTGCACATC...TAGTGACAGTATGAAGAACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp TTCAGCTTATCATTCTATTTCCCACGATGCATTTGTGTTCCTGATTGTTTTGAAGCACGGTGGTCTCCATaGTGCTGGGCAGGTAGCCCC +
Preference number: 4 (lower is better)
Translates to: FSLSFYFPRCICVPDCFEARWSP*CWAGSP
Trigger: GGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGC...TTCAAAACAATCAGGAACACAAATGCATCGTGGGAAATAGAATGATAAGCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp TCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCAGCATGTTCTCACAGGTCACAGCTTTaGATGATGGCGTCTCGTTAT +
Preference number: 4 (lower is better)
Translates to: SIHSLLKRAPPPSVAACSHRSQL*MMASRY
Trigger: ATAACGAGACGCCATCATGCAAAGCTGTGACCTGTG...AGAACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp TCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCAGCATGTTCTATCTCTTCCTTGTTCTaGATTGCCACCAGATGTGTG +
Preference number: 4 (lower is better)
Translates to: SIHSLLKRAPPPSVAACSISSLF*IATRCV
Trigger: CACACATCTGGTGGCAATTCAGAACAAGGAAGAGAT...AGAACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GAGTCGGGATCCCAGTTTTTAAGCAGGCAAGAGGAACCAGGATTCTGTAGACAGTCTTTGTTTGTTGTTTaGTTCACCTGGAGCCCAGTT +
Preference number: 4 (lower is better)
Translates to: ESGSQFLSRQEEPGFCRQSLFVV*FTWSPV
Trigger: AACTGGGCTCCAGGTGAACCAAACAACAAACAAAGA...CTGTCTACAGAATCCTGGTTCCTCTTGCCTGCTTAAAAACTGGGATCCCGACTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp CTGAGTCATTCTAGTAGAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTAAGGTCCAGAAGCACTaGGAAGACATTTCATGTTGC +
Preference number: 4 (lower is better)
Translates to: LSHSSRGLALSLSFDPWSKVQKH*EDISCC
Trigger: GCAACATGAAATGTCTTCCCAGTGCTTCTGGACCTT...ACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCTACTAGAATGACTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp TTTGAAGAGAGCACCTCCACCTTCTGTGGCAGCATGTTCTTCATACTGTCACTAATCCCATTCCCCTCTTaGACCACACTGAAGTCTTCT +
Preference number: 4 (lower is better)
Translates to: FEESTSTFCGSMFFILSLIPFPS*TTLKSS
Trigger: AGAAGACTTCAGTGTGGTCCAAGAGGGGAATGGGAT...TAGTGACAGTATGAAGAACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp GGATCTCATGCTGGCTTCAGTGCCAGGACACAGAACACAATGTTCAAGAATACTGGTGAAGTTACAGGATaGCTTAAACGCAAGTTCTCC +
Preference number: 4 (lower is better)
Translates to: GSHAGFSARTQNTMFKNTGEVTG*LKRKFS
Trigger: GGAGAACTTGCGTTTAAGTCATCCTGTAACTTCACC...AGTATTCTTGAACATTGTGTTCTGTGTCCTGGCACTGAAGCCAGCATGAGATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp GGATCTCATGCTGGCTTCAGTGCCAGGACACAGAACACAATGTTCAAGAATACTAGGAGAACTCACAACTaGACCCATTTTGGAAAGGTC +
Preference number: 4 (lower is better)
Translates to: GSHAGFSARTQNTMFKNTRRTHN*THFGKV
Trigger: GACCTTTCCAAAATGGGTCCAGTTGTGAGTTCTCCT...AGTATTCTTGAACATTGTGTTCTGTGTCCTGGCACTGAAGCCAGCATGAGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp GGATCTCATGCTGGCTTCAGTGCCAGGACACAGAACACAATGTTCAAGAATACTTGCAGGTGTAACTATTaGTGGTCTCTATGCATTCAC +
Preference number: 4 (lower is better)
Translates to: GSHAGFSARTQNTMFKNTCRCNY*WSLCIH
Trigger: GTGAATGCATAGAGACCATCAATAGTTACACCTGCA...AGTATTCTTGAACATTGTGTTCTGTGTCCTGGCACTGAAGCCAGCATGAGATCC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp TTCAGCTTATCATTCTATTTCCCACGATGCATTTGTGTTCCTGATTGTTTTGAAGGTCACAGCTTTGCATaGTGGCGTCTCGTTATCCCA +
Preference number: 4 (lower is better)
Translates to: FSLSFYFPRCICVPDCFEGHSFA*WRLVIP
Trigger: TGGGATAACGAGACGCCATCATGCAAAGCTGTGACC...TTCAAAACAATCAGGAACACAAATGCATCGTGGGAAATAGAATGATAAGCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp TTCAGCTTATCATTCTATTTCCCACGATGCATTTGTGTTCCTGATTGTTTTGAAAACACGTGGGCTTCTTaGTATCCCATTCCCCTCTTG +
Preference number: 4 (lower is better)
Translates to: FSLSFYFPRCICVPDCFENTWAS*YPIPLL
Trigger: CAAGAGGGGAATGGGATAGCAAGAAGCCCACGTGTT...TTCAAAACAATCAGGAACACAAATGCATCGTGGGAAATAGAATGATAAGCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp TTCAGCTTATCATTCTATTTCCCACGATGCATTTGTGTTCCTGATTGTTTTGAATCTATGCATTCACCATaGCCACTGCAGGATGCATTG +
Preference number: 4 (lower is better)
Translates to: FSLSFYFPRCICVPDCFESMHSP*PLQDAL
Trigger: CAATGCATCCTGCAGTGGTCATGGTGAATGCATAGA...TTCAAAACAATCAGGAACACAAATGCATCGTGGGAAATAGAATGATAAGCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CCA 90 bp TTCAGCTTATCATTCTATTTCCCACGATGCATTTGTGTTCCTGATTGTTTTGAATCACAGCTGAACACGTaGGCTTCTTGCTATCCCATT +
Preference number: 4 (lower is better)
Translates to: FSLSFYFPRCICVPDCFESQLNT*ASCYPI
Trigger: AATGGGATAGCAAGAAGCCCACGTGTTCAGCTGTGA...TTCAAAACAATCAGGAACACAAATGCATCGTGGGAAATAGAATGATAAGCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR TCA 90 bp TTCAGCTTATCATTCTATTTCCCACGATGCATTTGTGTTCCTGATTGTTTTGAAACACTGAAGTCTTCTTaGTCCCTTCAGTTCAAATCC +
Preference number: 4 (lower is better)
Translates to: FSLSFYFPRCICVPDCFETLKSS*SLQFKS
Trigger: GGATTTGAACTGAAGGGATCAAGAAGACTTCAGTGT...TTCAAAACAATCAGGAACACAAATGCATCGTGGGAAATAGAATGATAAGCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR GCA 90 bp TTCAGCTTATCATTCTATTTCCCACGATGCATTTGTGTTCCTGATTGTTTTGAATTCCTTGTTCTGAATTaGCACCAGATGTGTGTAGTC +
Preference number: 4 (lower is better)
Translates to: FSLSFYFPRCICVPDCFEFLVLN*HQMCVV
Trigger: GACTACACACATCTGGTGGCAATTCAGAACAAGGAA...TTCAAAACAATCAGGAACACAAATGCATCGTGGGAAATAGAATGATAAGCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp GCGCACTCCACTCTCCAGAGGACGTACACCGCACGGTGGTCTCCATaGTGCTGGGCAGGTAGCCCCTTTTACAGCCAAAGGAGCAGGAGG +
Preference number: 5 (lower is better)
Translates to: AHSTLQRTYTARWSP*CWAGSPFYSQRSRR
Trigger: CCTCCTGCTCCTTTGGCTGTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGTCCTCTGGAGAGTGGAGTGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 90 bp CTGGAGCAGGCGCACTCCACTCTCCAGAGGACGTACACCGCACGGTaGTCTCCATGCTGCTGGGCAGGTAGCCCCTTTTACAGCCAAAGG +
Preference number: 5 (lower is better)
Translates to: LEQAHSTLQRTYTAR*SPCCWAGSPFYSQR
Trigger: CCTTTGGCTGTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGTCCTCTGGAGAGTGGAGTGCGCCTGCTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 90 bp GTGGGCAGGGTGGGTCAAAGCTTCACATTCAACCACATGGCAGGCTaGAGCAGGCGCACTCCACTCTCCAGAGGACGTACACCGCACGGT +
Preference number: 5 (lower is better)
Translates to: VGRVGQSFTFNHMAG*SRRTPLSRGRTPHG
Trigger: ACCGTGCGGTGTACGTCCTCTGGAGAGTGGAGTGCGCCTGCTCCAGCCTGCCATGTGGTTGAATGTGAAGCTTTGACCCACCCTGCCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp CACTCCACTCTCCAGAGGACGTACACCGCACGGTGGTCTCCATGCTaGTGGGCAGGTAGCCCCTTTTACAGCCAAAGGAGCAGGAGGAAT +
Preference number: 5 (lower is better)
Translates to: HSTLQRTYTARWSPC*WAGSPFYSQRSRRN
Trigger: ATTCCTCCTGCTCCTTTGGCTGTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGTCCTCTGGAGAGTGGAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp GCTTCACACTGGACAGCTTTGCAGACTGGGATTTGTGGTGTCCACTaGCCTTGTGCGCTGCATTCAACCTGCGCTGGCCCCTGCAACGTG +
Preference number: 5 (lower is better)
Translates to: ASHWTALQTGICGVH*PCALHSTCAGPCNV
Trigger: CACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAGCTGTCCAGTGTGAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 90 bp CTGATACCGTGGGCAGGGTGGGTCAAAGCTTCACATTCAACCACATaGCAGGCTGGAGCAGGCGCACTCCACTCTCCAGAGGACGTACAC +
Preference number: 5 (lower is better)
Translates to: LIPWAGWVKASHSTT*QAGAGALHSPEDVH
Trigger: GTGTACGTCCTCTGGAGAGTGGAGTGCGCCTGCTCCAGCCTGCCATGTGGTTGAATGTGAAGCTTTGACCCACCCTGCCCACGGTATCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp CTGGACAGCTTTGCAGACTGGGATTTGTGGTGTCCACTGCCCTTGTaGGCTGCATTCAACCTGCGCTGGCCCCTGCAACGTGAAACTCTG +
Preference number: 5 (lower is better)
Translates to: LDSFADWDLWCPLPL*AAFNLRWPLQRETL
Trigger: CAGAGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAGCTGTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp GGTGGGAGCAGTTCAGGCTTCCATAGTCAGGGTGTTCCTGTGGTTTaGAAGTCACAGCTTGCTCACAGTTGGGTCCCAGGAAGCCAGGGT +
Preference number: 5 (lower is better)
Translates to: GGSSSGFHSQGVPVV*KSQLAHSWVPGSQG
Trigger: ACCCTGGCTTCCTGGGACCCAACTGTGAGCAAGCTGTGACTTGCAAACCACAGGAACACCCTGACTATGGAAGCCTGAACTGCTCCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 90 bp TCCACTCTCCAGAGGACGTACACCGCACGGTGGTCTCCATGCTGCTaGGCAGGTAGCCCCTTTTACAGCCAAAGGAGCAGGAGGAATTAT +
Preference number: 5 (lower is better)
Translates to: STLQRTYTARWSPCC*AGSPFYSQRSRRNY
Trigger: ATAATTCCTCCTGCTCCTTTGGCTGTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGTCCTCTGGAGAGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TCTCCCCCGTCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCAACAGCTTGCTCACAGTaGGGTCCCAGGAAGCCAGGG +
Preference number: 5 (lower is better)
Translates to: SPPSIHSLLKRAPPPSVATACSQ*GPRKPG
Trigger: CCCTGGCTTCCTGGGACCCAACTGTGAGCAAGCTGT...TGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp GGTGTCCACTGCCCTTGTGCGCTGCATTCAACCTGCGCTGGCCCCTaGAACGTGAAACTCTGCTCACAGGTGAAGTTACAGGATGACTTA +
Preference number: 5 (lower is better)
Translates to: GVHCPCALHSTCAGP*NVKLCSQVKLQDDL
Trigger: TAAGTCATCCTGTAACTTCACCTGTGAGCAGAGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp ACTGGGATTTGTGGTGTCCACTGCCCTTGTGCGCTGCATTCAACCTaGGCTGGCCCCTGCAACGTGAAACTCTGCTCACAGGTGAAGTTA +
Preference number: 5 (lower is better)
Translates to: TGICGVHCPCALHST*AGPCNVKLCSQVKL
Trigger: TAACTTCACCTGTGAGCAGAGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACAAATCCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 90 bp GATTTGTGGTGTCCACTGCCCTTGTGCGCTGCATTCAACCTGCGCTaGCCCCTGCAACGTGAAACTCTGCTCACAGGTGAAGTTACAGGA +
Preference number: 5 (lower is better)
Translates to: DLWCPLPLCAAFNLR*PLQRETLLTGEVTG
Trigger: TCCTGTAACTTCACCTGTGAGCAGAGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACAAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 90 bp TGTTCCGCTGCAGCTCATGTTCATCTTTCCCGGGACGTCAAGGCTTaGACATTGTACCACTTGGCAGGAGGGGACTTCCTGGGTCCACTT +
Preference number: 5 (lower is better)
Translates to: CSAAAHVHLSRDVKA*TLYHLAGGDFLGPL
Trigger: AAGTGGACCCAGGAAGTCCCCTCCTGCCAAGTGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAGATGAACATGAGCTGCAGCGGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 90 bp CATTCTGGGGCCGAGGGACATCATCACATTTCACAGCTGAACACGTaGGCTTCTTGCTATCCCATTCCCCTCTTGGACCACACTGAAGTC +
Preference number: 5 (lower is better)
Translates to: HSGAEGHHHISQLNT*ASCYPIPLLDHTEV
Trigger: GACTTCAGTGTGGTCCAAGAGGGGAATGGGATAGCAAGAAGCCCACGTGTTCAGCTGTGAAATGTGATGATGTCCCTCGGCCCCAGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TCTCCCCCGTCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCACAAGTTCTCCAGCTGTaGAGTGGCTGCAGCTCACAA +
Preference number: 5 (lower is better)
Translates to: SPPSIHSLLKRAPPPSVAQVLQL*SGCSSQ
Trigger: TTGTGAGCTGCAGCCACTCAACAGCTGGAGAACTTG...TGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 90 bp ACAGTCAAACGTGCATGTCGTGTTCCATGGGTAGCTCCCAGGATTTaGGGAACATTTCCTGATACCGTGGGCAGGGTGGGTCAAAGCTTC +
Preference number: 5 (lower is better)
Translates to: TVKRACRVPWVAPRI*GTFPDTVGRVGQSF
Trigger: GAAGCTTTGACCCACCCTGCCCACGGTATCAGGAAATGTTCCTCAAATCCTGGGAGCTACCCATGGAACACGACATGCACGTTTGACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 90 bp GGCGTCTCGTTATCCCAGATGCCAGATGAGGTACACTGTAGATTCTaGGCTCCAACTCGCCTGTACCCTTCCACACAGTCAAACGTGCAT +
Preference number: 5 (lower is better)
Translates to: GVSLSQMPDEVHCRF*APTRLYPSTQSNVH
Trigger: ATGCACGTTTGACTGTGTGGAAGGGTACAGGCGAGTTGGAGCTCAGAATCTACAGTGTACCTCATCTGGCATCTGGGATAACGAGACGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp CGTCACAGGTCACAGCTTTGCATGATGGCGTCTCGTTATCCCAGATaGCAGATGAGGTACACTGTAGATTCTGAGCTCCAACTCGCCTGT +
Preference number: 5 (lower is better)
Translates to: RHRSQLCMMASRYPR*QMRYTVDSELQLAC
Trigger: ACAGGCGAGTTGGAGCTCAGAATCTACAGTGTACCTCATCTGGCATCTGGGATAACGAGACGCCATCATGCAAAGCTGTGACCTGTGACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp TGTGCGCTGCATTCAACCTGCGCTGGCCCCTGCAACGTGAAACTCTaGTCACAGGTGAAGTTACAGGATGACTTAAACGCAAGTTCTCCA +
Preference number: 5 (lower is better)
Translates to: CALHSTCAGPCNVKL*SQVKLQDDLNASSP
Trigger: TGGAGAACTTGCGTTTAAGTCATCCTGTAACTTCACCTGTGAGCAGAGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 90 bp AGACATTTCATGTTGCCCTGCTGTGGCGCAGATAAGGCTTCACACTaGACAGCTTTGCAGACTGGGATTTGTGGTGTCCACTGCCCTTGT +
Preference number: 5 (lower is better)
Translates to: RHFMLPCCGADKASH*TALQTGICGVHCPC
Trigger: ACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAGCTGTCCAGTGTGAAGCCTTATCTGCGCCACAGCAGGGCAACATGAAATGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGCAGTGGTGTCCACTGCCCTaGTGCGCTGCATTCAACCTG +
Preference number: 5 (lower is better)
Translates to: WPCHSVLIHGVGIPVFKQWCPLP*CAAFNL
Trigger: CAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCA...CTGCTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TCTCCCCCGTCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCATCACACTGGACAGCTTaGCAGACTGGGATTTGTGGT +
Preference number: 5 (lower is better)
Translates to: SPPSIHSLLKRAPPPSVASHWTA*QTGICG
Trigger: ACCACAAATCCCAGTCTGCAAAGCTGTCCAGTGTGA...TGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp GATTCTGAGCTCCAACTCGCCTGTACCCTTCCACACAGTCAAACGTaGATGTCGTGTTCCATGGGTAGCTCCCAGGATTTGAGGAACATT +
Preference number: 5 (lower is better)
Translates to: DSELQLACTLPHSQT*MSCSMGSSQDLRNI
Trigger: AATGTTCCTCAAATCCTGGGAGCTACCCATGGAACACGACATGCACGTTTGACTGTGTGGAAGGGTACAGGCGAGTTGGAGCTCAGAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp CTGAGTCATTCTAGTAGAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTTGGACATTGTACCACTaGGCAGGAGGGGACTTCCTG +
Preference number: 5 (lower is better)
Translates to: LSHSSRGLALSLSFDPWSWTLYH*AGGDFL
Trigger: CAGGAAGTCCCCTCCTGCCAAGTGGTACAATGTCCA...ACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCTACTAGAATGACTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 90 bp ATGTCGTGTTCCATGGGTAGCTCCCAGGATTTGAGGAACATTTCCTaGTACCGTGGGCAGGGTGGGTCAAAGCTTCACATTCAACCACAT +
Preference number: 5 (lower is better)
Translates to: MSCSMGSSQDLRNIS*YRGQGGSKLHIQPH
Trigger: ATGTGGTTGAATGTGAAGCTTTGACCCACCCTGCCCACGGTATCAGGAAATGTTCCTCAAATCCTGGGAGCTACCCATGGAACACGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp TTTTGGAAAGGTCCAGAAGCACTGGGAAGACATTTCATGTTGCCCTaGTGTGGCGCAGATAAGGCTTCACACTGGACAGCTTTGCAGACT +
Preference number: 5 (lower is better)
Translates to: FWKGPEALGRHFMLP*CGADKASHWTALQT
Trigger: AGTCTGCAAAGCTGTCCAGTGTGAAGCCTTATCTGCGCCACAGCAGGGCAACATGAAATGTCTTCCCAGTGCTTCTGGACCTTTCCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp TGTCCAATCATCAGGACATGTAAACTCACACACTGTGCCGAAAACTaGTGTTCCGCTGCAGCTCATGTTCATCTTTCCCGGGACGTCAAG +
Preference number: 5 (lower is better)
Translates to: CPIIRTCKLTHCAEN*CSAAAHVHLSRDVK
Trigger: CTTGACGTCCCGGGAAAGATGAACATGAGCTGCAGCGGAACAGCAGTTTTCGGCACAGTGTGTGAGTTTACATGTCCTGATGATTGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCAGCATGTTCTGGAAGACATTTCATGTaGCCCTGCTGTGGCGCAGAT +
Preference number: 5 (lower is better)
Translates to: SIHSLLKRAPPPSVAACSGRHFM*PCCGAD
Trigger: ATCTGCGCCACAGCAGGGCAACATGAAATGTCTTCC...AGAACATGCTGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp GAGTCGGGATCCCAGTTTTTAAGCAGGCAAGAGGAACCAGGATTCTGTAGACAGTATCCCATTCCCCTCTaGGACCACACTGAAGTCTTC +
Preference number: 5 (lower is better)
Translates to: ESGSQFLSRQEEPGFCRQYPIPL*DHTEVF
Trigger: GAAGACTTCAGTGTGGTCCAAGAGGGGAATGGGATA...CTGTCTACAGAATCCTGGTTCCTCTTGCCTGCTTAAAAACTGGGATCCCGACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp GAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTTTCTTTGTTTGTTGTTaGGTTCACCTGGAGCCCAGT +
Preference number: 5 (lower is better)
Translates to: EGWPCHSVLIHGVGIPVFFFVCC*VHLEPS
Trigger: ACTGGGCTCCAGGTGAACCAAACAACAAACAAAGAA...AAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTC
49% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 90 bp AGTTCAAATCCTTCTTCGCAGGAGAACTCACAACTGGACCCATTTTaGAAAGGTCCAGAAGCACTGGGAAGACATTTCATGTTGCCCTGC +
Preference number: 5 (lower is better)
Translates to: SSNPSSQENSQLDPF*KGPEALGRHFMLPC
Trigger: GCAGGGCAACATGAAATGTCTTCCCAGTGCTTCTGGACCTTTCCAAAATGGGTCCAGTTGTGAGTTCTCCTGCGAAGAAGGATTTGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TCTCCCCCGTCCATTCACTCTCTTTTGAAGAGAGCACCTCCACCTTCTGTGGCACAGATCCATACGTTATaGACTTTTCTGATTCCAATC +
Preference number: 5 (lower is better)
Translates to: SPPSIHSLLKRAPPPSVAQIHTL*TFLIPI
Trigger: GATTGGAATCAGAAAAGTCAATAACGTATGGATCTG...TGCCACAGAAGGTGGAGGTGCTCTCTTCAAAAGAGAGTGAATGGACGGGGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp GAGTCGGGATCCCAGTTTTTAAGCAGGCAAGAGGAACCAGGATTCTGTAGACAGTCATTTCTTTGTTTGTaGTTTGGTTCACCTGGAGCC +
Preference number: 5 (lower is better)
Translates to: ESGSQFLSRQEEPGFCRQSFLCL*FGSPGA
Trigger: GGCTCCAGGTGAACCAAACAACAAACAAAGAAATGA...CTGTCTACAGAATCCTGGTTCCTCTTGCCTGCTTAAAAACTGGGATCCCGACTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGCAGAGAACTGCAGATCCATaGAGTGTCCAATCATCAGGA +
Preference number: 5 (lower is better)
Translates to: WPCHSVLIHGVGIPVFKQRTADP*SVQSSG
Trigger: TCCTGATGATTGGACACTCAATGGATCTGCAGTTCT...CTGCTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 90 bp AGCACAGAGCCAGCTTCTTTTTGTTACATCTCTCGTCATTCCACATaGCCGAGTCTTTGGTTCGTTGGATGTAAATCTCTACACAGTCCT +
Preference number: 5 (lower is better)
Translates to: STEPASFCYISRHST*PSLWFVGCKSLHSP
Trigger: AGGACTGTGTAGAGATTTACATCCAACGAACCAAAGACTCGGGCATGTGGAATGACGAGAGATGTAACAAAAAGAAGCTGGCTCTGTGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 90 bp TTGATCCCTTCAGTTCAAATCCTTCTTCGCAGGAGAACTCACAACTaGACCCATTTTGGAAAGGTCCAGAAGCACTGGGAAGACATTTCA +
Preference number: 5 (lower is better)
Translates to: LIPSVQILLRRRTHN*THFGKVQKHWEDIS
Trigger: TGAAATGTCTTCCCAGTGCTTCTGGACCTTTCCAAAATGGGTCCAGTTGTGAGTTCTCCTGCGAAGAAGGATTTGAACTGAAGGGATCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TGGCCTTGTCACTCAGTTTTGATCCATGGAGTCGGGATCCCAGTTTTTAAGCAGAGAGCCAGCTTCTTTTaGTTACATCTCTCGTCATTC +
Preference number: 5 (lower is better)
Translates to: WPCHSVLIHGVGIPVFKQRASFF*LHLSSF
Trigger: GAATGACGAGAGATGTAACAAAAAGAAGCTGGCTCT...CTGCTTAAAAACTGGGATCCCGACTCCATGGATCAAAACTGAGTGACAAGGCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp CTGAGTCATTCTAGTAGAGGGCTGGCCTTGTCACTCAGTTTTGATCCATGGAGTCACACTGAAGTCTTCTaGATCCCTTCAGTTCAAATC +
Preference number: 5 (lower is better)
Translates to: LSHSSRGLALSLSFDPWSHTEVF*IPSVQI
Trigger: GATTTGAACTGAAGGGATCAAGAAGACTTCAGTGTG...ACTCCATGGATCAAAACTGAGTGACAAGGCCAGCCCTCTACTAGAATGACTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp GAGTCGGGATCCCAGTTTTTAAGCAGGCAAGAGGAACCAGGATTCTGTAGACAGCAGGAACAAATTTCTTaGCTTTCTTCCGAAAGTATC +
Preference number: 5 (lower is better)
Translates to: ESGSQFLSRQEEPGFCRQQEQIS*LSSESI
Trigger: GATACTTTCGGAAGAAAGCAAAGAAATTTGTTCCTG...CTGTCTACAGAATCCTGGTTCCTCTTGCCTGCTTAAAAACTGGGATCCCGACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp GGATCTCATGCTGGCTTCAGTGCCAGGACACAGAACACAATGTTCAAGAATACTACAGTCCTCATTTCTTaGTTTGTTGTTTGGTTCACC +
Preference number: 5 (lower is better)
Translates to: GSHAGFSARTQNTMFKNTTVLIS*FVVWFT
Trigger: GGTGAACCAAACAACAAACAAAGAAATGAGGACTGT...AGTATTCTTGAACATTGTGTTCTGTGTCCTGGCACTGAAGCCAGCATGAGATCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TTCAGCTTATCATTCTATTTCCCACGATGCATTTGTGTTCCTGATTGTTTTGAATTTGCAGACTGGGATTaGTGGTGTCCACTGCCCTTG +
Preference number: 5 (lower is better)
Translates to: FSLSFYFPRCICVPDCFEFADWD*WCPLPL
Trigger: CAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAA...TTCAAAACAATCAGGAACACAAATGCATCGTGGGAAATAGAATGATAAGCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TTCAGCTTATCATTCTATTTCCCACGATGCATTTGTGTTCCTGATTGTTTTGAAACAACTGGACCCATTTaGGAAAGGTCCAGAAGCACT +
Preference number: 5 (lower is better)
Translates to: FSLSFYFPRCICVPDCFETTGPI*ERSRST
Trigger: AGTGCTTCTGGACCTTTCCAAAATGGGTCCAGTTGT...TTCAAAACAATCAGGAACACAAATGCATCGTGGGAAATAGAATGATAAGCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 90 bp CCATACGTTATTGACTTTTCTGATTCCAATCCAGTAGTAACTCGGTaGATGTTTCAGATTGGAGTTAAGGTAGTTGATCTCTTCCTTGTT +
Preference number: 5 (lower is better)
Translates to: PYVIDFSDSNPVVTR*MFQIGVKVVDLFLV
Trigger: AACAAGGAAGAGATCAACTACCTTAACTCCAATCTGAAACATTCACCGAGTTACTACTGGATTGGAATCAGAAAAGTCAATAACGTATGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS-3UTR CAA 90 bp TTCAGCTTATCATTCTATTTCCCACGATGCATTTGTGTTCCTGATTGTTTTGAATCCTCATTTCTTTGTTaGTTGTTTGGTTCACCTGGA +
Preference number: 5 (lower is better)
Translates to: FSLSFYFPRCICVPDCFESSFLC*LFGSPG
Trigger: TCCAGGTGAACCAAACAACAAACAAAGAAATGAGGA...TTCAAAACAATCAGGAACACAAATGCATCGTGGGAAATAGAATGATAAGCTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp GCGCACTCCACTCTCCAGAGGACGTACACCGCACGGTaGTCTCCATGCTGCTGGGCAGGTAGCCCCTTTTAC +
Preference number: 6 (lower is better)
Translates to: AHSTLQRTYTAR*SPCCWAGSPFY
Trigger: GTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGTCCTCTGGAGAGTGGAGTGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp AGAAAGTGCAACTACCAAGGGACGGGTGGGGCTGACTaGGGCTTCACAGGTAGGCGGCATCCCAGACCAGCG +
Preference number: 6 (lower is better)
Translates to: RKCNYQGTGGAD*GFTGRRHPRPA
Trigger: CGCTGGTCTGGGATGCCGCCTACCTGTGAAGCCCCAGTCAGCCCCACCCGTCCCTTGGTAGTTGCACTTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp CTCCAGAGGACGTACACCGCACGGTGGTCTCCATGCTaGTGGGCAGGTAGCCCCTTTTACAGCCAAAGGAGC +
Preference number: 6 (lower is better)
Translates to: LQRTYTARWSPC*WAGSPFYSQRS
Trigger: GCTCCTTTGGCTGTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGTCCTCTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp CAGAGGACGTACACCGCACGGTGGTCTCCATGCTGCTaGGCAGGTAGCCCCTTTTACAGCCAAAGGAGCAGG +
Preference number: 6 (lower is better)
Translates to: QRTYTARWSPCC*AGSPFYSQRSR
Trigger: CCTGCTCCTTTGGCTGTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGTCCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp ACTCTCCAGAGGACGTACACCGCACGGTGGTCTCCATaGTGCTGGGCAGGTAGCCCCTTTTACAGCCAAAGG +
Preference number: 6 (lower is better)
Translates to: TLQRTYTARWSP*CWAGSPFYSQR
Trigger: CCTTTGGCTGTAAAAGGGGCTACCTGCCCAGCAGCATGGAGACCACCGTGCGGTGTACGTCCTCTGGAGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp TGTGGTGTCCACTGCCCTTGTGCGCTGCATTCAACCTaGGCTGGCCCCTGCAACGTGAAACTCTGCTCACAG +
Preference number: 6 (lower is better)
Translates to: CGVHCPCALHST*AGPCNVKLCSQ
Trigger: CTGTGAGCAGAGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp TGGACAGCTTTGCAGACTGGGATTTGTGGTGTCCACTaGCCTTGTGCGCTGCATTCAACCTGCGCTGGCCCC +
Preference number: 6 (lower is better)
Translates to: WTALQTGICGVH*PCALHSTCAGP
Trigger: GGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAGCTGTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp TGTCCACTGCCCTTGTGCGCTGCATTCAACCTGCGCTaGCCCCTGCAACGTGAAACTCTGCTCACAGGTGAA +
Preference number: 6 (lower is better)
Translates to: CPLPLCAAFNLR*PLQRETLLTGE
Trigger: TTCACCTGTGAGCAGAGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 72 bp AGCTTTGCAGACTGGGATTTGTGGTGTCCACTGCCCTaGTGCGCTGCATTCAACCTGCGCTGGCCCCTGCAA +
Preference number: 6 (lower is better)
Translates to: SFADWDLWCPLP*CAAFNLRWPLQ
Trigger: TTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 72 bp CTTTCCCGGGACGTCAAGGCTTGGACATTGTACCACTaGGCAGGAGGGGACTTCCTGGGTCCACTTTCCCTG +
Preference number: 6 (lower is better)
Translates to: LSRDVKAWTLYH*AGGDFLGPLSL
Trigger: CAGGGAAAGTGGACCCAGGAAGTCCCCTCCTGCCAAGTGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 90 bp CAGGCTTCCATAGTCAGGGTGTTCCTGTGGTTTGCAAGTCACAGCTaGCTCACAGTTGGGTCCCAGGAAGCCAGGGTGGCACTTGCAGGT +
Preference number: 6 (lower is better)
Translates to: QASIVRVFLWFASHS*LTVGSQEARVALAG
Trigger: ACCTGCAAGTGCCACCCTGGCTTCCTGGGACCCAACTGTGAGCAAGCTGTGACTTGCAAACCACAGGAACACCCTGACTATGGAAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 90 bp ACACTGGACAGCTTTGCAGACTGGGATTTGTGGTGTCCACTGCCCTaGTGCGCTGCATTCAACCTGCGCTGGCCCCTGCAACGTGAAACT +
Preference number: 6 (lower is better)
Translates to: TLDSFADWDLWCPLP*CAAFNLRWPLQRET
Trigger: AGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAGCTGTCCAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 90 bp GCTGCAGCTCATGTTCATCTTTCCCGGGACGTCAAGGCTTGGACATaGTACCACTTGGCAGGAGGGGACTTCCTGGGTCCACTTTCCCTG +
Preference number: 6 (lower is better)
Translates to: AAAHVHLSRDVKAWT*YHLAGGDFLGPLSL
Trigger: CAGGGAAAGTGGACCCAGGAAGTCCCCTCCTGCCAAGTGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAGATGAACATGAGCTGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 90 bp CTGTTCCGCTGCAGCTCATGTTCATCTTTCCCGGGACGTCAAGGCTaGGACATTGTACCACTTGGCAGGAGGGGACTTCCTGGGTCCACT +
Preference number: 6 (lower is better)
Translates to: LFRCSSCSSFPGRQG*DIVPLGRRGLPGST
Trigger: AGTGGACCCAGGAAGTCCCCTCCTGCCAAGTGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAGATGAACATGAGCTGCAGCGGAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp TGCCCTTGTGCGCTGCATTCAACCTGCGCTGGCCCCTaGAACGTGAAACTCTGCTCACAGGTGAAGTTACAG +
Preference number: 6 (lower is better)
Translates to: CPCALHSTCAGP*NVKLCSQVKLQ
Trigger: CTGTAACTTCACCTGTGAGCAGAGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATGCAGCGCACAAGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp GTTCCTGTGGTTTGCAAGTCACAGCTTGCTCACAGTTaGGTCCCAGGAAGCCAGGGTGGCACTTGCAGGTGT +
Preference number: 6 (lower is better)
Translates to: VPVVCKSQLAHS*VPGSQGGTCRC
Trigger: ACACCTGCAAGTGCCACCCTGGCTTCCTGGGACCCAACTGTGAGCAAGCTGTGACTTGCAAACCACAGGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp GTGGGTCAAAGCTTCACATTCAACCACATGGCAGGCTaGAGCAGGCGCACTCCACTCTCCAGAGGACGTACA +
Preference number: 6 (lower is better)
Translates to: VGQSFTFNHMAG*SRRTPLSRGRT
Trigger: TGTACGTCCTCTGGAGAGTGGAGTGCGCCTGCTCCAGCCTGCCATGTGGTTGAATGTGAAGCTTTGACCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 90 bp ATGTTGCCCTGCTGTGGCGCAGATAAGGCTTCACACTGGACAGCTTaGCAGACTGGGATTTGTGGTGTCCACTGCCCTTGTGCGCTGCAT +
Preference number: 6 (lower is better)
Translates to: MLPCCGADKASHWTA*QTGICGVHCPCALH
Trigger: ATGCAGCGCACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAGCTGTCCAGTGTGAAGCCTTATCTGCGCCACAGCAGGGCAACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 72 bp CCCTTTTACAGCCAAAGGAGCAGGAGGAATTATAGCTaGAGGGGCCGAACGGGTGGGAGCAGTTCAGGCTTC +
Preference number: 6 (lower is better)
Translates to: PFYSQRSRRNYS*RGRTGGSSSGF
Trigger: GAAGCCTGAACTGCTCCCACCCGTTCGGCCCCTTCAGCTATAATTCCTCCTGCTCCTTTGGCTGTAAAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 72 bp CGTGCATGTCGTGTTCCATGGGTAGCTCCCAGGATTTaGGGAACATTTCCTGATACCGTGGGCAGGGTGGGT +
Preference number: 6 (lower is better)
Translates to: RACRVPWVAPRI*GTFPDTVGRVG
Trigger: ACCCACCCTGCCCACGGTATCAGGAAATGTTCCTCAAATCCTGGGAGCTACCCATGGAACACGACATGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp CCCAGACCAGCGTCCCGTGGCACCACACGTCAGAACTaGAGATCCATTGAGTGTCCAATCATCAGGACATGT +
Preference number: 6 (lower is better)
Translates to: PRPASRGTTRQN*RSIECPIIRTC
Trigger: ACATGTCCTGATGATTGGACACTCAATGGATCTGCAGTTCTGACGTGTGGTGCCACGGGACGCTGGTCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp GGCTTCACACTGGACAGCTTTGCAGACTGGGATTTGTaGTGTCCACTGCCCTTGTGCGCTGCATTCAACCTG +
Preference number: 6 (lower is better)
Translates to: GFTLDSFADWDL*CPLPLCAAFNL
Trigger: CAGGTTGAATGCAGCGCACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAGCTGTCCAGTGTGAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp GCAGCTCATGTTCATCTTTCCCGGGACGTCAAGGCTTaGACATTGTACCACTTGGCAGGAGGGGACTTCCTG +
Preference number: 6 (lower is better)
Translates to: AAHVHLSRDVKA*TLYHLAGGDFL
Trigger: CAGGAAGTCCCCTCCTGCCAAGTGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAGATGAACATGAGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 72 bp ATAGTCAGGGTGTTCCTGTGGTTTGCAAGTCACAGCTaGCTCACAGTTGGGTCCCAGGAAGCCAGGGTGGCA +
Preference number: 6 (lower is better)
Translates to: IVRVFLWFASHS*LTVGSQEARVA
Trigger: TGCCACCCTGGCTTCCTGGGACCCAACTGTGAGCAAGCTGTGACTTGCAAACCACAGGAACACCCTGACTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 72 bp CATGTTCATCTTTCCCGGGACGTCAAGGCTTGGACATaGTACCACTTGGCAGGAGGGGACTTCCTGGGTCCA +
Preference number: 6 (lower is better)
Translates to: HVHLSRDVKAWT*YHLAGGDFLGP
Trigger: TGGACCCAGGAAGTCCCCTCCTGCCAAGTGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAGATGAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp CTCCAACTCGCCTGTACCCTTCCACACAGTCAAACGTaGATGTCGTGTTCCATGGGTAGCTCCCAGGATTTG +
Preference number: 6 (lower is better)
Translates to: LQLACTLPHSQT*MSCSMGSSQDL
Trigger: CAAATCCTGGGAGCTACCCATGGAACACGACATGCACGTTTGACTGTGTGGAAGGGTACAGGCGAGTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp GGTCCAGAAGCACTGGGAAGACATTTCATGTTGCCCTaGTGTGGCGCAGATAAGGCTTCACACTGGACAGCT +
Preference number: 6 (lower is better)
Translates to: GPEALGRHFMLP*CGADKASHWTA
Trigger: AGCTGTCCAGTGTGAAGCCTTATCTGCGCCACAGCAGGGCAACATGAAATGTCTTCCCAGTGCTTCTGGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp GGAGCAGTTCAGGCTTCCATAGTCAGGGTGTTCCTGTaGTTTGCAAGTCACAGCTTGCTCACAGTTGGGTCC +
Preference number: 6 (lower is better)
Translates to: GAVQASIVRVFL*FASHSLLTVGS
Trigger: GGACCCAACTGTGAGCAAGCTGTGACTTGCAAACCACAGGAACACCCTGACTATGGAAGCCTGAACTGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp ATGTTGCCCTGCTGTGGCGCAGATAAGGCTTCACACTaGACAGCTTTGCAGACTGGGATTTGTGGTGTCCAC +
Preference number: 6 (lower is better)
Translates to: MLPCCGADKASH*TALQTGICGVH
Trigger: GTGGACACCACAAATCCCAGTCTGCAAAGCTGTCCAGTGTGAAGCCTTATCTGCGCCACAGCAGGGCAACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 72 bp TGCTGTGGCGCAGATAAGGCTTCACACTGGACAGCTTaGCAGACTGGGATTTGTGGTGTCCACTGCCCTTGT +
Preference number: 6 (lower is better)
Translates to: CCGADKASHWTA*QTGICGVHCPC
Trigger: ACAAGGGCAGTGGACACCACAAATCCCAGTCTGCAAAGCTGTCCAGTGTGAAGCCTTATCTGCGCCACAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 72 bp TGCAGCTCATGTTCATCTTTCCCGGGACGTCAAGGCTaGGACATTGTACCACTTGGCAGGAGGGGACTTCCT +
Preference number: 6 (lower is better)
Translates to: CSSCSSFPGRQG*DIVPLGRRGLP
Trigger: AGGAAGTCCCCTCCTGCCAAGTGGTACAATGTCCAAGCCTTGACGTCCCGGGAAAGATGAACATGAGCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp AGTTCAGGCTTCCATAGTCAGGGTGTTCCTGTGGTTTaGAAGTCACAGCTTGCTCACAGTTGGGTCCCAGGA +
Preference number: 6 (lower is better)
Translates to: SSGFHSQGVPVV*KSQLAHSWVPG
Trigger: TCCTGGGACCCAACTGTGAGCAAGCTGTGACTTGCAAACCACAGGAACACCCTGACTATGGAAGCCTGAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp GGAAAGGTCCAGAAGCACTGGGAAGACATTTCATGTTaGCCTGCTGTGGCGCAGATAAGGCTTCACACTGGA +
Preference number: 6 (lower is better)
Translates to: GKVQKHWEDISC*PAVAQIRLHTG
Trigger: TCCAGTGTGAAGCCTTATCTGCGCCACAGCAGGGCAACATGAAATGTCTTCCCAGTGCTTCTGGACCTTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 72 bp TGGAAAGGTCCAGAAGCACTGGGAAGACATTTCATGTaGCCCTGCTGTGGCGCAGATAAGGCTTCACACTGG +
Preference number: 6 (lower is better)
Translates to: WKGPEALGRHFM*PCCGADKASHW
Trigger: CCAGTGTGAAGCCTTATCTGCGCCACAGCAGGGCAACATGAAATGTCTTCCCAGTGCTTCTGGACCTTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 72 bp TCCATGGGTAGCTCCCAGGATTTGAGGAACATTTCCTaGTACCGTGGGCAGGGTGGGTCAAAGCTTCACATT +
Preference number: 6 (lower is better)
Translates to: SMGSSQDLRNIS*YRGQGGSKLHI
Trigger: AATGTGAAGCTTTGACCCACCCTGCCCACGGTATCAGGAAATGTTCCTCAAATCCTGGGAGCTACCCATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp CATTCAACCTGCGCTGGCCCCTGCAACGTGAAACTCTaGTCACAGGTGAAGTTACAGGATGACTTAAACGCA +
Preference number: 6 (lower is better)
Translates to: HSTCAGPCNVKL*SQVKLQDDLNA
Trigger: TGCGTTTAAGTCATCCTGTAACTTCACCTGTGAGCAGAGTTTCACGTTGCAGGGGCCAGCGCAGGTTGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 72 bp TTATCCCAGATGCCAGATGAGGTACACTGTAGATTCTaGGCTCCAACTCGCCTGTACCCTTCCACACAGTCA +
Preference number: 6 (lower is better)
Translates to: LSQMPDEVHCRF*APTRLYPSTQS
Trigger: TGACTGTGTGGAAGGGTACAGGCGAGTTGGAGCTCAGAATCTACAGTGTACCTCATCTGGCATCTGGGATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp ATCAGGACATGTAAACTCACACACTGTGCCGAAAACTaGTGTTCCGCTGCAGCTCATGTTCATCTTTCCCGG +
Preference number: 6 (lower is better)
Translates to: IRTCKLTHCAEN*CSAAAHVHLSR
Trigger: CCGGGAAAGATGAACATGAGCTGCAGCGGAACAGCAGTTTTCGGCACAGTGTGTGAGTTTACATGTCCTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp TCTCTATGCATTCACCATGACCACTGCAGGATGCATTaGTACACGAAGCTGTGTAGCACAGAGCCAGCTTCT +
Preference number: 6 (lower is better)
Translates to: SLCIHHDHCRMH*YTKLCSTEPAS
Trigger: AGAAGCTGGCTCTGTGCTACACAGCTTCGTGTACCAATGCATCCTGCAGTGGTCATGGTGAATGCATAGAGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 72 bp GGTCCACTTTCCCTGAGATGTGCACTCAAGTTGAGCTaGGCCATGCAAGCTAAAGCCCTCATTGCATTGAAA +
Preference number: 6 (lower is better)
Translates to: GPLSLRCALKLS*AMQAKALIALK
Trigger: TTTCAATGCAATGAGGGCTTTAGCTTGCATGGCTCAGCTCAACTTGAGTGCACATCTCAGGGAAAGTGGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp TCACAGCTTTGCATGATGGCGTCTCGTTATCCCAGATaGCAGATGAGGTACACTGTAGATTCTGAGCTCCAA +
Preference number: 6 (lower is better)
Translates to: SQLCMMASRYPR*QMRYTVDSELQ
Trigger: TTGGAGCTCAGAATCTACAGTGTACCTCATCTGGCATCTGGGATAACGAGACGCCATCATGCAAAGCTGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 90 bp CAGTTCAAATCCTTCTTCGCAGGAGAACTCACAACTGGACCCATTTaGGAAAGGTCCAGAAGCACTGGGAAGACATTTCATGTTGCCCTG +
Preference number: 6 (lower is better)
Translates to: QFKSFFAGELTTGPI*ERSRSTGKTFHVAL
Trigger: CAGGGCAACATGAAATGTCTTCCCAGTGCTTCTGGACCTTTCCAAAATGGGTCCAGTTGTGAGTTCTCCTGCGAAGAAGGATTTGAACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp GGAGTTAAGGTAGTTGATCTCTTCCTTGTTCTGAATTaGCACCAGATGTGTGTAGTCCCGCTGACAGTATGC +
Preference number: 6 (lower is better)
Translates to: GVKVVDLFLVLN*HQMCVVPLTVC
Trigger: GCATACTGTCAGCGGGACTACACACATCTGGTGGCAATTCAGAACAAGGAAGAGATCAACTACCTTAACTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 72 bp TCCTTCTTCGCAGGAGAACTCACAACTGGACCCATTTaGGAAAGGTCCAGAAGCACTGGGAAGACATTTCAT +
Preference number: 6 (lower is better)
Translates to: SFFAGELTTGPI*ERSRSTGKTFH
Trigger: ATGAAATGTCTTCCCAGTGCTTCTGGACCTTTCCAAAATGGGTCCAGTTGTGAGTTCTCCTGCGAAGAAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 72 bp ATGCAAGCTAAAGCCCTCATTGCATTGAAAGGCACATaGGGACTTGTAGGTGAATTCTCCAGTAGTAGCATG +
Preference number: 6 (lower is better)
Translates to: MQAKALIALKGT*GLVGEFSSSSM
Trigger: CATGCTACTACTGGAGAATTCACCTACAAGTCCTCATGTGCCTTTCAATGCAATGAGGGCTTTAGCTTGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CCA 72 bp TGTTACATCTCTCGTCATTCCACATGCCCGAGTCTTTaGTTCGTTGGATGTAAATCTCTACACAGTCCTCAT +
Preference number: 6 (lower is better)
Translates to: CYISRHSTCPSL*FVGCKSLHSPH
Trigger: ATGAGGACTGTGTAGAGATTTACATCCAACGAACCAAAGACTCGGGCATGTGGAATGACGAGAGATGTAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS GCA 72 bp CCAGCTTCTTTTTGTTACATCTCTCGTCATTCCACATaGCCGAGTCTTTGGTTCGTTGGATGTAAATCTCTA +
Preference number: 6 (lower is better)
Translates to: PASFCYISRHST*PSLWFVGCKSL
Trigger: TAGAGATTTACATCCAACGAACCAAAGACTCGGGCATGTGGAATGACGAGAGATGTAACAAAAAGAAGCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 72 bp GACGTTGTAAGAAGGCACATGGTAGTTTTCAAACGATaGAAGGCTTTGGCAGCTGCTAGCAGGAACAAATTT +
Preference number: 6 (lower is better)
Translates to: DVVRRHMVVFKR*KALAAASRNKF
Trigger: AAATTTGTTCCTGCTAGCAGCTGCCAAAGCCTTCAATCGTTTGAAAACTACCATGTGCCTTCTTACAACGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 90 bp GACGTTGTAAGAAGGCACATGGTAGTTTTCAAACGATTGAAGGCTTaGGCAGCTGCTAGCAGGAACAAATTTCTTTGCTTTCTTCCGAAA +
Preference number: 6 (lower is better)
Translates to: DVVRRHMVVFKRLKA*AAASRNKFLCFLPK
Trigger: TTTCGGAAGAAAGCAAAGAAATTTGTTCCTGCTAGCAGCTGCCAAAGCCTTCAATCGTTTGAAAACTACCATGTGCCTTCTTACAACGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS CAA 72 bp AGAAGGCACATGGTAGTTTTCAAACGATTGAAGGCTTaGGCAGCTGCTAGCAGGAACAAATTTCTTTGCTTT +
Preference number: 6 (lower is better)
Translates to: RRHMVVFKRLKA*AAASRNKFLCF
Trigger: AAAGCAAAGAAATTTGTTCCTGCTAGCAGCTGCCAAAGCCTTCAATCGTTTGAAAACTACCATGTGCCTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6
CDS TCA 72 bp ATTGACTTTTCTGATTCCAATCCAGTAGTAACTCGGTaGATGTTTCAGATTGGAGTTAAGGTAGTTGATCTC +
Preference number: 6 (lower is better)
Translates to: IDFSDSNPVVTR*MFQIGVKVVDL
Trigger: GAGATCAACTACCTTAACTCCAATCTGAAACATTCACCGAGTTACTACTGGATTGGAATCAGAAAAGTCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027874.6