RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SEL1L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020964

Ensembl transcript IDs: ENSMUST00000021347.12, ENSMUST00000167466.2, ENSMUST00000178462.8

Found 386 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCATCCTCTGGCGTCTGGACTAGGGCTCTGTATATGCAACTCACATaGGTAGCTGGGGCAAAGTCCTCTGTGGGAGCACGGAGTCAGCTG +
Preference number: 1 (lower is better)
Translates to: SSSGVWTRALYMQLT*VAGAKSSVGARSQL
Trigger: CAGCTGACTCCGTGCTCCCACAGAGGACTTTGCCCCAGCTACTCATGTGAGTTGCATATACAGAGCCCTAGTCCAGACGCCAGAGGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 90 bp AAGCAGCTTCTGGGATTCAACACGCCTCACGCCTCTTCCAGGCGGTaGCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAA +
Preference number: 1 (lower is better)
Translates to: KQLLGFNTPHASSRR*HHPEPYIKCKRSQQ
Trigger: TTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCACCGCCTGGAAGAGGCGTGAGGCGTGTTGAATCCCAGAAGCTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 90 bp CCACTGAGAGTTGTCATTCCGTATGGCACTGAAACAAACATTCACTaGAGCTCTGCCGAGAGCCGCGCATCCCTGAAAAGGAAGGCAGCA +
Preference number: 1 (lower is better)
Translates to: PLRVVIPYGTETNIH*SSAESRASLKRKAA
Trigger: TGCTGCCTTCCTTTTCAGGGATGCGCGGCTCTCGGCAGAGCTGCAGTGAATGTTTGTTTCAGTGCCATACGGAATGACAACTCTCAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 90 bp CTGAAACAAACATTCACTGCAGCTCTGCCGAGAGCCGCGCATCCCTaGAAAGGAAGGCAGCAGGTTCTAAGCAGCTTCTGGGATTCAACA +
Preference number: 1 (lower is better)
Translates to: LKQTFTAALPRAAHP*KGRQQVLSSFWDST
Trigger: TGTTGAATCCCAGAAGCTGCTTAGAACCTGCTGCCTTCCTTTTCAGGGATGCGCGGCTCTCGGCAGAGCTGCAGTGAATGTTTGTTTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 90 bp TGGGAAGTAAAGATGGAGGCAAAACTGCTGCCATCCAAGGAGGCCTaGGGTGGATGGCACAGGAAAACCACAGAAGCCAGTGGCATCTTA +
Preference number: 1 (lower is better)
Translates to: WEVKMEAKLLPSKEA*GGWHRKTTEASGIL
Trigger: TAAGATGCCACTGGCTTCTGTGGTTTTCCTGTGCCATCCACCTCAGGCCTCCTTGGATGGCAGCAGTTTTGCCTCCATCTTTACTTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 90 bp AAAGGAAAGAGGAAAGCCACTGAGAGTTGTCATTCCGTATGGCACTaGAACAAACATTCACTGCAGCTCTGCCGAGAGCCGCGCATCCCT +
Preference number: 1 (lower is better)
Translates to: KGKRKATESCHSVWH*NKHSLQLCREPRIP
Trigger: AGGGATGCGCGGCTCTCGGCAGAGCTGCAGTGAATGTTTGTTTCAGTGCCATACGGAATGACAACTCTCAGTGGCTTTCCTCTTTCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 90 bp AGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTTCTaGTTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTC +
Preference number: 1 (lower is better)
Translates to: RACPRSHLKLVKAVF*FLHLDHPLASGLGL
Trigger: GAGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 90 bp TCCCACGTCCCACAGACTCTAGGTAAGAGAACAGAGCAAAGCGCTTaGGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGT +
Preference number: 1 (lower is better)
Translates to: SHVPQTLGKRTEQSA*DHLGKQQRELSSRS
Trigger: ACTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGGGACGTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 90 bp AAAGCTCCCGCAGCATACACAACGGTGCACCCAGGCCTTTGGTTTTaGCATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTT +
Preference number: 1 (lower is better)
Translates to: KAPAAYTTVHPGLWF*HALGLTHPPLSEYF
Trigger: AAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATGGCAAAACCAAAGGCCTGGGTGCACCGTTGTGTATGCTGCGGGAGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 90 bp TTTACAAGCCCAAAGCAACATTACATTTTTGAGAGGAATGCTGGCTaGCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTG +
Preference number: 1 (lower is better)
Translates to: FTSPKQHYIFERNAG*LSKICLSVAMSSNL
Trigger: CAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTCCTCTCAAAAATGTAATGTTGCTTTGGGCTTGTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 90 bp GCTCATAACCAAAGGGCCCTTCATATGCATACAAAATCGGCTTTCTaGTGTGTAAACAGGCTCTTTAACATAGAAATCATTGGTATATGG +
Preference number: 1 (lower is better)
Translates to: AHNQRALHMHTKSAF*CVNRLFNIEIIGIW
Trigger: CCATATACCAATGATTTCTATGTTAAAGAGCCTGTTTACACATCAGAAAGCCGATTTTGTATGCATATGAAGGGCCCTTTGGTTATGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
3UTR GCA 90 bp ATTTACAAAAAGTCTAGTATGGTGTTCCTTCATGACGTCAGCTTATaGTCTTTAAGCATGTCCCTCAACATCTCTAGTGGTCATACTTTG +
Preference number: 1 (lower is better)
Translates to: IYKKSSMVFLHDVSL*SLSMSLNISSGHTL
Trigger: CAAAGTATGACCACTAGAGATGTTGAGGGACATGCTTAAAGAGCATAAGCTGACGTCATGAAGGAACACCATACTAGACTTTTTGTAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACAAGCAGCTCCCCAGTaGTCACCGACCAAGGTGAGT +
Preference number: 2 (lower is better)
Translates to: EARQRALVGRKTDLRDRPQAAPQ*SPTKVS
Trigger: ACTCACCTTGGTCGGTGACCACTGGGGAGCTGCTTG...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp GGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACGAGATGGAGGCAAAACTaGTGCCATCCAAGGAGGCCT +
Preference number: 2 (lower is better)
Translates to: GSSESLGRPQDRPARQTTRWRQN*CHPRRP
Trigger: AGGCCTCCTTGGATGGCAGCAGTTTTGCCTCCATCT...CGTGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp GGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACGGAGCACGGAGTCAGCTaGCTGAGTTTGACTTCTACT +
Preference number: 2 (lower is better)
Translates to: GSSESLGRPQDRPARQTTEHGVS*LSLTST
Trigger: AGTAGAAGTCAAACTCAGTCAGCTGACTCCGTGCTC...CGTGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCATCATCCTCTGGCGTCTaGACTAGGGCTCTGTATATG +
Preference number: 2 (lower is better)
Translates to: EARQRALVGRKTDLRDRPSSSGV*TRALYM
Trigger: CATATACAGAGCCCTAGTCCAGACGCCAGAGGATGA...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp GGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACGGCAACATTACATTTTTaGGAGGAATGCTGGCTGCCT +
Preference number: 2 (lower is better)
Translates to: GSSESLGRPQDRPARQTTATLHF*EECWLP
Trigger: AGGCAGCCAGCATTCCTCTCAAAAATGTAATGTTGC...CGTGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCAGAGCCCTACATCAAATaGAAGCGTTCTCAGCAAGCA +
Preference number: 2 (lower is better)
Translates to: EARQRALVGRKTDLRDRPEPYIK*KRSQQA
Trigger: TGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTC...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCAGCACAGGACACCAAATaGGCCTTACTATTTACAAGC +
Preference number: 2 (lower is better)
Translates to: EARQRALVGRKTDLRDRPAQDTK*ALLFTS
Trigger: GCTTGTAAATAGTAAGGCTCATTTGGTGTCCTGTGC...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGCCATCCAAGGAGGCCTaGGGTGGATGGCACAGGAAA +
Preference number: 2 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQPSKEA*GGWHRK
Trigger: TTTCCTGTGCCATCCACCTCAGGCCTCCTTGGATGG...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp AAGAGAACCACCGAACCCAGTGCCTATTTGCTTCGGTCCCACGTCCCACAGACTACTCACATGAGTAGCTaGGGCAAAGTCCTCTGTGGG +
Preference number: 2 (lower is better)
Translates to: KRTTEPSAYLLRSHVPQTTHMSS*GKVLCG
Trigger: CCCACAGAGGACTTTGCCCCAGCTACTCATGTGAGT...AGTCTGTGGGACGTGGGACCGAAGCAAATAGGCACTGGGTTCGGTGGTTCTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp AAGAGAACCACCGAACCCAGTGCCTATTTGCTTCGGTCCCACGTCCCACAGACTTGCCTCTCAAAGATCTaGCTCTCTGTGGCCATGTCT +
Preference number: 2 (lower is better)
Translates to: KRTTEPSAYLLRSHVPQTCLSKI*LSVAMS
Trigger: AGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCA...AGTCTGTGGGACGTGGGACCGAAGCAAATAGGCACTGGGTTCGGTGGTTCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp GGCTGTTTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTAGAGCCGCGCATCCCTaGAAAGGAAGGCAGCAGGTT +
Preference number: 2 (lower is better)
Translates to: GCFLISPFRSSSGVWTRARAAHP*KGRQQV
Trigger: AACCTGCTGCCTTCCTTTTCAGGGATGCGCGGCTCT...AGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAAACAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACCAAGCAGCTCCCCAGTaGTCACCGACCAAGGTGAGT +
Preference number: 2 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDQAAPQ*SPTKVS
Trigger: ACTCACCTTGGTCGGTGACCACTGGGGAGCTGCTTG...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp GTTACTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTAGAGCCGCGCATCCCTaGAAAGGAAGGCAGCAGGTT +
Preference number: 2 (lower is better)
Translates to: VTAFPKHPEDVLLGLFCFRAAHP*KGRQQV
Trigger: AACCTGCTGCCTTCCTTTTCAGGGATGCGCGGCTCT...AAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAGTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp TGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGGAGGCCAGCATACACAACGGTaGACCCAGGCCTTTGGTTTT +
Preference number: 2 (lower is better)
Translates to: WLPLKDLPLCGHVFKFGGQHTQR*TQAFGF
Trigger: AAAACCAAAGGCCTGGGTGCACCGTTGTGTATGCTG...GCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGTGCCTCTCAAAGATCTaGCTCTCTGTGGCCATGTCT +
Preference number: 2 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQCLSKI*LSVAMS
Trigger: AGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCA...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp TTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATAGAGCCGCGCATCCCTaGAAAGGAAGGCAGCAGGTT +
Preference number: 2 (lower is better)
Translates to: FLISPFRSSSGVWTRALYRAAHP*KGRQQV
Trigger: AACCTGCTGCCTTCCTTTTCAGGGATGCGCGGCTCT...ATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp TATTTGCTTCGGTCCCACGTCCCACAGACTCTAGGTAAGAGAACAGAGCAAAGCGAGCACGGAGTCAGCTaGCTGAGTTTGACTTCTACT +
Preference number: 2 (lower is better)
Translates to: YLLRSHVPQTLGKRTEQSEHGVS*LSLTST
Trigger: AGTAGAAGTCAAACTCAGTCAGCTGACTCCGTGCTC...GCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGGGACGTGGGACCGAAGCAAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCCAAGCAGCTCCCCAGTaGTCACCGACCAAGGTGAGT +
Preference number: 2 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSQAAPQ*SPTKVS
Trigger: ACTCACCTTGGTCGGTGACCACTGGGGAGCTGCTTG...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp AAGAGAACCACCGAACCCAGTGCCTATTTGCTTCGGTCCCACGTCCCACAGACTAAACTTGCAACTAACTaGGTTTCCCCAGGTTGTCAA +
Preference number: 2 (lower is better)
Translates to: KRTTEPSAYLLRSHVPQTKLATN*VSPGCQ
Trigger: TTGACAACCTGGGGAAACCCAGTTAGTTGCAAGTTT...AGTCTGTGGGACGTGGGACCGAAGCAAATAGGCACTGGGTTCGGTGGTTCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp TATTTGCTTCGGTCCCACGTCCCACAGACTCTAGGTAAGAGAACAGAGCAAAGCTCATCCTCTGGCGTCTaGACTAGGGCTCTGTATATG +
Preference number: 2 (lower is better)
Translates to: YLLRSHVPQTLGKRTEQSSSSGV*TRALYM
Trigger: CATATACAGAGCCCTAGTCCAGACGCCAGAGGATGA...GCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGGGACGTGGGACCGAAGCAAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp GAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGTGCACCCAGGCCTTTaGTTTTGCCATGCATTGGGT +
Preference number: 2 (lower is better)
Translates to: ECWLPLKDLPLCGHVFKFVHPGL*FCHALG
Trigger: ACCCAATGCATGGCAAAACCAAAGGCCTGGGTGCAC...AAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 90 bp TCCGGTTACTTCTTGCGTATCTTCTTGCGTGTTTTGCAGATGTGGTaGGTCACTGGTTGCAAATGCCACACACACAAGGGGTTGAGGTCT +
Preference number: 2 (lower is better)
Translates to: SGYFLRIFLRVLQMW*VTGCKCHTHKGLRS
Trigger: AGACCTCAACCCCTTGTGTGTGTGGCATTTGCAACCAGTGACCAACCACATCTGCAAAACACGCAAGAAGATACGCAAGAAGTAACCGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCCCAGCCTACTGTGAGTaGCAGGAGACTGCAGCTACA +
Preference number: 2 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSPAYCE*QETAAT
Trigger: TGTAGCTGCAGTCTCCTGTCACTCACAGTAGGCTGG...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp GAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTCAGCATACACAACGGTaGACCCAGGCCTTTGGTTTT +
Preference number: 2 (lower is better)
Translates to: ECWLPLKDLPLCGHVFKFQHTQR*TQAFGF
Trigger: AAAACCAAAGGCCTGGGTGCACCGTTGTGTATGCTG...AAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp CCAATAAATAGTAAACAAAGAACATCTGGATGGCTCCCTGCTCATAACCAAAGGGCGTATTTCCTTTCCTaGGCTGAGGGAGGGGCTGGG +
Preference number: 2 (lower is better)
Translates to: PINSKQRTSGWLPAHNQRAYFLS*AEGGAG
Trigger: CCCAGCCCCTCCCTCAGCCCAGGAAAGGAAATACGC...CCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp AAGAGAACCACCGAACCCAGTGCCTATTTGCTTCGGTCCCACGTCCCACAGACTACAGATGAACTACATTaGATTCTCATGACAATCCCA +
Preference number: 2 (lower is better)
Translates to: KRTTEPSAYLLRSHVPQTTDELH*ILMTIP
Trigger: TGGGATTGTCATGAGAATTCAATGTAGTTCATCTGT...AGTCTGTGGGACGTGGGACCGAAGCAAATAGGCACTGGGTTCGGTGGTTCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp CCAATAAATAGTAAACAAAGAACATCTGGATGGCTCCCTGCTCATAACCAAAGGGCCGCAAGACAGACCTaGGAGACAGACCACGAAAGG +
Preference number: 2 (lower is better)
Translates to: PINSKQRTSGWLPAHNQRAARQT*ETDHER
Trigger: CCTTTCGTGGTCTGTCTCGCAGGTCTGTCTTGCGGC...CCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCACTCACATGAGTAGCTaGGGCAAAGTCCTCTGTGGG +
Preference number: 2 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSTHMSS*GKVLCG
Trigger: CCCACAGAGGACTTTGCCCCAGCTACTCATGTGAGT...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp CCAATAAATAGTAAACAAAGAACATCTGGATGGCTCCCTGCTCATAACCAAAGGGTTGAGGTCTGCATGTaGAGGCTGCCATGGCTGCTC +
Preference number: 2 (lower is better)
Translates to: PINSKQRTSGWLPAHNQRVEVCM*RLPWLL
Trigger: GAGCAGCCATGGCAGCCTCCACATGCAGACCTCAAC...CCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp TTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATATGCAACTCACATGAGCATTCCGTATGGCACTaGAACAAACATTCACTGCAG +
Preference number: 2 (lower is better)
Translates to: LDHPLASGLGLCICNSHEHSVWH*NKHSLQ
Trigger: CTGCAGTGAATGTTTGTTTCAGTGCCATACGGAATG...CTCATGTGAGTTGCATATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp TTACACAGACCACAAATTCAGCTTGGGCTTTGGGGTGATTATGTGAAGCTCTCAGAGCCCTACATCAAATaGAAGCGTTCTCAGCAAGCA +
Preference number: 2 (lower is better)
Translates to: LHRPQIQLGLWGDYVKLSEPYIK*KRSQQA
Trigger: TGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTC...TGAGAGCTTCACATAATCACCCCAAAGCCCAAGCTGAATTTGTGGTCTGTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCGAGCCCTACATCAAATaGAAGCGTTCTCAGCAAGCA +
Preference number: 2 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSEPYIK*KRSQQA
Trigger: TGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTC...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp TTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATCATTCCGTATGGCACTaGAACAAACATTCACTGCAG +
Preference number: 2 (lower is better)
Translates to: FLISPFRSSSGVWTRALYHSVWH*NKHSLQ
Trigger: CTGCAGTGAATGTTTGTTTCAGTGCCATACGGAATG...ATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp CCAATAAATAGTAAACAAAGAACATCTGGATGGCTCCCTGCTCATAACCAAAGGCCAGGCCTTTGGTTTTaGCATGCATTGGGTCTAACC +
Preference number: 2 (lower is better)
Translates to: PINSKQRTSGWLPAHNQRPGLWF*HALGLT
Trigger: GGTTAGACCCAATGCATGGCAAAACCAAAGGCCTGG...CCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGGATTACAGAAAACAATaGAAAGGCGATAATGAACAG +
Preference number: 2 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQDYRKQ*KGDNEQ
Trigger: CTGTTCATTATCGCCTTTCCATTGTTTTCTGTAATC...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 90 bp TGGCAAGTTCTAGTCTCAGACTTAAGCATGTTTTTAGGGTTAAACTaGCAACTAACTGGGTTTCCCCAGGTTGTCAATGCTCAGGACCTT +
Preference number: 2 (lower is better)
Translates to: WQVLVSDLSMFLGLN*QLTGFPQVVNAQDL
Trigger: AAGGTCCTGAGCATTGACAACCTGGGGAAACCCAGTTAGTTGCAAGTTTAACCCTAAAAACATGCTTAAGTCTGAGACTAGAACTTGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCGAGCACGGAGTCAGCTaGCTGAGTTTGACTTCTACT +
Preference number: 2 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVEHGVS*LSLTST
Trigger: AGTAGAAGTCAAACTCAGTCAGCTGACTCCGTGCTC...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 90 bp CAAAGGAAGTCACCACCTGCCAATCTTGACAATAGCATTTCATATTaGAAGACTTTGGGAGGGTTGTCTGTTCTCTGTGCCATAAGAAAT +
Preference number: 2 (lower is better)
Translates to: QRKSPPANLDNSISY*KTLGGLSVLCAIRN
Trigger: ATTTCTTATGGCACAGAGAACAGACAACCCTCCCAAAGTCTTCAAATATGAAATGCTATTGTCAAGATTGGCAGGTGGTGACTTCCTTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCGCACAGGACACCAAATaGGCCTTACTATTTACAAGC +
Preference number: 2 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVAQDTK*ALLFTS
Trigger: GCTTGTAAATAGTAAGGCTCATTTGGTGTCCTGTGC...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCCCTTTGGTTTTGCCATaGATTGGGTCTAACCCATCC +
Preference number: 2 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCPLVLP*IGSNPS
Trigger: GGATGGGTTAGACCCAATGCATGGCAAAACCAAAGG...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCAGCAAGGGGCAAGTCTaGTACATGAAGAACAAACCT +
Preference number: 2 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVSKGQV*YMKNKP
Trigger: AGGTTTGTTCTTCATGTAGCAGACTTGCCCCTTGCT...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR TCA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCTTTCCCATAATACTGTaGGCACACACAAATGTACAC +
Preference number: 2 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVFPIIL*AHTNVH
Trigger: GTGTACATTTGTGTGTGCTCACAGTATTATGGGAAA...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR GCA 90 bp CCAATAAATAGTAAACAAAGAACATCTGGATGGCTCCCTGCTCATAACCAAAGGGAATCATGTAAAACCTaGCTTCTAAAGGAAGAGAGA +
Preference number: 2 (lower is better)
Translates to: PINSKQRTSGWLPAHNQRESCKT*LLKEER
Trigger: TCTCTCTTCCTTTAGAAGGCAGGTTTTACATGATTC...CCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp CATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTTAGTATTTTAGTAAAACTTGCAACTAACTaGGTTTCCCCAGGTTGTCAA +
Preference number: 2 (lower is better)
Translates to: HALGLTHPPLSEYFSILVKLATN*VSPGCQ
Trigger: TTGACAACCTGGGGAAACCCAGTTAGTTGCAAGTTT...TACTAAAATACTAAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CCA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCGATTACAGAAAACAATaGAAAGGCGATAATGAACAG +
Preference number: 2 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVDYRKQ*KGDNEQ
Trigger: CTGTTCATTATCGCCTTTCCATTGTTTTCTGTAATC...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 72 bp TCCAGGCGGTGCCACCATCCAGAGCCCTACATCAAATaGAAGCGTTCTCAGCAAGCAGCTCCCCAGTGGTCA +
Preference number: 3 (lower is better)
Translates to: SRRCHHPEPYIK*KRSQQAAPQWS
Trigger: TGACCACTGGGGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCACCGCCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CCA 72 bp ACACAAGGGGTTGAGGTCTGCATGTGGAGGCTGCCATaGCTGCTCCTAAGCACCAGAGAGCAAACCTGGGGA +
Preference number: 3 (lower is better)
Translates to: TQGVEVCMWRLP*LLLSTREQTWG
Trigger: TCCCCAGGTTTGCTCTCTGGTGCTTAGGAGCAGCCATGGCAGCCTCCACATGCAGACCTCAACCCCTTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCATGGTTTTGCCATGCATaGGGTCTAACCCATCCTCCA +
Preference number: 3 (lower is better)
Translates to: EARQRALVGRKTDLRDRPWFCHA*GLTHPP
Trigger: TGGAGGATGGGTTAGACCCAATGCATGGCAAAACCA...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 72 bp ACATTCACTGCAGCTCTGCCGAGAGCCGCGCATCCCTaGAAAGGAAGGCAGCAGGTTCTAAGCAGCTTCTGG +
Preference number: 3 (lower is better)
Translates to: TFTAALPRAAHP*KGRQQVLSSFW
Trigger: CCAGAAGCTGCTTAGAACCTGCTGCCTTCCTTTTCAGGGATGCGCGGCTCTCGGCAGAGCTGCAGTGAATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 72 bp GGCGTCTGGACTAGGGCTCTGTATATGCAACTCACATaGGTAGCTGGGGCAAAGTCCTCTGTGGGAGCACGG +
Preference number: 3 (lower is better)
Translates to: GVWTRALYMQLT*VAGAKSSVGAR
Trigger: CCGTGCTCCCACAGAGGACTTTGCCCCAGCTACTCATGTGAGTTGCATATACAGAGCCCTAGTCCAGACGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 72 bp TGGTTGCAAATGCCACACACACAAGGGGTTGAGGTCTaGATGTGGAGGCTGCCATGGCTGCTCCTAAGCACC +
Preference number: 3 (lower is better)
Translates to: WLQMPHTQGVEV*MWRLPWLLLST
Trigger: GGTGCTTAGGAGCAGCCATGGCAGCCTCCACATGCAGACCTCAACCCCTTGTGTGTGTGGCATTTGCAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CCA 72 bp GCTCCCGCAGCATACACAACGGTGCACCCAGGCCTTTaGTTTTGCCATGCATTGGGTCTAACCCATCCTCCA +
Preference number: 3 (lower is better)
Translates to: APAAYTTVHPGL*FCHALGLTHPP
Trigger: TGGAGGATGGGTTAGACCCAATGCATGGCAAAACCAAAGGCCTGGGTGCACCGTTGTGTATGCTGCGGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CCA 72 bp TGGAAAGGCGATAATGAACAGGGGCGTGAGCTCCCATaGGGTGCTGGCTACCCAACGCTACCATCCACAGAT +
Preference number: 3 (lower is better)
Translates to: WKGDNEQGRELP*GAGYPTLPSTD
Trigger: ATCTGTGGATGGTAGCGTTGGGTAGCCAGCACCCCATGGGAGCTCACGCCCCTGTTCATTATCGCCTTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 72 bp GCTGGGAGAGGAGGCAGGGCTAAGGACCCTGTTTACTaGACCGCTCACAATCTAGTCTTTCAGCACAGGACA +
Preference number: 3 (lower is better)
Translates to: AGRGGRAKDPVY*TAHNLVFQHRT
Trigger: TGTCCTGTGCTGAAAGACTAGATTGTGAGCGGTGCAGTAAACAGGGTCCTTAGCCCTGCCTCCTCTCCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTCTGAAGACGTCCTGCTaGGCTTGTTTTGCTTTTGAC +
Preference number: 3 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFLKTSC*ACFAFD
Trigger: GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAG...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 72 bp GTTGTCATTCCGTATGGCACTGAAACAAACATTCACTaGAGCTCTGCCGAGAGCCGCGCATCCCTGAAAAGG +
Preference number: 3 (lower is better)
Translates to: VVIPYGTETNIH*SSAESRASLKR
Trigger: CCTTTTCAGGGATGCGCGGCTCTCGGCAGAGCTGCAGTGAATGTTTGTTTCAGTGCCATACGGAATGACAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 72 bp GCAGCATACACAACGGTGCACCCAGGCCTTTGGTTTTaGCATGCATTGGGTCTAACCCATCCTCCATTGTCT +
Preference number: 3 (lower is better)
Translates to: AAYTTVHPGLWF*HALGLTHPPLS
Trigger: AGACAATGGAGGATGGGTTAGACCCAATGCATGGCAAAACCAAAGGCCTGGGTGCACCGTTGTGTATGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 72 bp ACCACTGTGCCCAGTTCCTGTGAATCATGTAAAACCTaGCTTCTAAAGGAAGAGAGACGGCAGAGACGGGCC +
Preference number: 3 (lower is better)
Translates to: TTVPSSCESCKT*LLKEERRQRRA
Trigger: GGCCCGTCTCTGCCGTCTCTCTTCCTTTAGAAGGCAGGTTTTACATGATTCACAGGAACTGGGCACAGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp AAGAGAACCACCGAACCCAGTGCCTATTTGCTTCGGTCCCACGTCCCACAGACTCTGAAGACGTCCTGCTaGGCTTGTTTTGCTTTTGAC +
Preference number: 3 (lower is better)
Translates to: KRTTEPSAYLLRSHVPQTLKTSC*ACFAFD
Trigger: GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAG...AGTCTGTGGGACGTGGGACCGAAGCAAATAGGCACTGGGTTCGGTGGTTCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp AAGAGAACCACCGAACCCAGTGCCTATTTGCTTCGGTCCCACGTCCCACAGACTAGCAACATTACATTTTaGAGAGGAATGCTGGCTGCC +
Preference number: 3 (lower is better)
Translates to: KRTTEPSAYLLRSHVPQTSNITF*RGMLAA
Trigger: GGCAGCCAGCATTCCTCTCAAAAATGTAATGTTGCT...AGTCTGTGGGACGTGGGACCGAAGCAAATAGGCACTGGGTTCGGTGGTTCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 72 bp AGGAAAGCCACTGAGAGTTGTCATTCCGTATGGCACTaGAACAAACATTCACTGCAGCTCTGCCGAGAGCCG +
Preference number: 3 (lower is better)
Translates to: RKATESCHSVWH*NKHSLQLCREP
Trigger: CGGCTCTCGGCAGAGCTGCAGTGAATGTTTGTTTCAGTGCCATACGGAATGACAACTCTCAGTGGCTTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 72 bp CCACAGACTCTAGGTAAGAGAACAGAGCAAAGCGCTTaGGATCATCTAGGAAAGCAGCAGCGAGAACTGAGT +
Preference number: 3 (lower is better)
Translates to: PQTLGKRTEQSA*DHLGKQQRELS
Trigger: ACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CCA 72 bp GGAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTaGCCATGTCTTCAAATTTGGAGGCAAATATCTTCG +
Preference number: 3 (lower is better)
Translates to: GMLAASQRSASL*PCLQIWRQISS
Trigger: CGAAGATATTTGCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CCA 72 bp TCTTGCGTATCTTCTTGCGTGTTTTGCAGATGTGGTTaGTCACTGGTTGCAAATGCCACACACACAAGGGGT +
Preference number: 3 (lower is better)
Translates to: SCVSSCVFCRCG*SLVANATHTRG
Trigger: ACCCCTTGTGTGTGTGGCATTTGCAACCAGTGACCAACCACATCTGCAAAACACGCAAGAAGATACGCAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCCCCAGGCCTTTGGTTTaGCCATGCATTGGGTCTAAC +
Preference number: 3 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSPRPLV*PCIGSN
Trigger: GTTAGACCCAATGCATGGCAAAACCAAAGGCCTGGG...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGCACCACCTGCCAATCTaGACAATAGCATTTCATATT +
Preference number: 3 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQHHLPI*TIAFHI
Trigger: AATATGAAATGCTATTGTCAAGATTGGCAGGTGGTG...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAACCCAGGCCTTTGGTTTaGCCATGCATTGGGTCTAAC +
Preference number: 3 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKPRPLV*PCIGSN
Trigger: GTTAGACCCAATGCATGGCAAAACCAAAGGCCTGGG...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp TATTTGCTTCGGTCCCACGTCCCACAGACTCTAGGTAAGAGAACAGAGCAAAGCGCCATGTCTTCAAATTaGGAGGCAAATATCTTCGAG +
Preference number: 3 (lower is better)
Translates to: YLLRSHVPQTLGKRTEQSAMSSN*EANIFE
Trigger: CTCGAAGATATTTGCCTCCAAATTTGAAGACATGGC...GCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGGGACGTGGGACCGAAGCAAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 72 bp GTCTGTTCTCTGTGCCATAAGAAATGTGAAGTAAAATaGGATCCGGGAAGCAACGAATCTACCCGAGGGAGG +
Preference number: 3 (lower is better)
Translates to: VCSLCHKKCEVK*DPGSNESTRGR
Trigger: CCTCCCTCGGGTAGATTCGTTGCTTCCCGGATCTCATTTTACTTCACATTTCTTATGGCACAGAGAACAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 72 bp ATTTTTGAGAGGAATGCTGGCTGCCTCTCAAAGATCTaGCTCTCTGTGGCCATGTCTTCAAATTTGGAGGCA +
Preference number: 3 (lower is better)
Translates to: IFERNAGCLSKI*LSVAMSSNLEA
Trigger: TGCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTCCTCTCAAAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 72 bp CCAAAGCAACATTACATTTTTGAGAGGAATGCTGGCTaGCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCT +
Preference number: 3 (lower is better)
Translates to: PKQHYIFERNAG*LSKICLSVAMS
Trigger: AGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTCCTCTCAAAAATGTAATGTTGCTTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp TTACACAGACCACAAATTCAGCTTGGGCTTTGGGGTGATTATGTGAAGCTCTCACTGAAGACGTCCTGCTaGGCTTGTTTTGCTTTTGAC +
Preference number: 3 (lower is better)
Translates to: LHRPQIQLGLWGDYVKLSLKTSC*ACFAFD
Trigger: GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAG...TGAGAGCTTCACATAATCACCCCAAAGCCCAAGCTGAATTTGTGGTCTGTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp GAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTCTTCGAGGAAAATTTTaGCTTCCTGGGTTTCCCATA +
Preference number: 3 (lower is better)
Translates to: ECWLPLKDLPLCGHVFKFLRGKF*LPGFPI
Trigger: TATGGGAAACCCAGGAAGCAAAAATTTTCCTCGAAG...AAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 72 bp ATTACACAGACCACAAATTCAGCTTGGGCTTTGGGGTaGTTATGTGAAGCTCTCAGTCGTTGTTTTCGCCTC +
Preference number: 3 (lower is better)
Translates to: ITQTTNSAWALG*LCEALSRCFRL
Trigger: GAGGCGAAAACAACGACTGAGAGCTTCACATAATCACCCCAAAGCCCAAGCTGAATTTGTGGTCTGTGTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCCCCAGGCCTTTGGTTTaGCCATGCATTGGGTCTAAC +
Preference number: 3 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVPRPLV*PCIGSN
Trigger: GTTAGACCCAATGCATGGCAAAACCAAAGGCCTGGG...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 72 bp CAGTTACTGCATTTCCCAAACACCCTGAAGACGTCCTaGTTGGCTTGTTTTGCTTTTGACTTAATGGCAAGT +
Preference number: 3 (lower is better)
Translates to: QLLHFPNTLKTS*LACFAFDLMAS
Trigger: ACTTGCCATTAAGTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAGTAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCTCATATTTGAAGACTTaGGGAGGGTTGTCTGTTCTC +
Preference number: 3 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSSYLKT*GGLSVL
Trigger: GAGAACAGACAACCCTCCCAAAGTCTTCAAATATGA...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCCTTCGAGGAAAATTTTaGCTTCCTGGGTTTCCCATA +
Preference number: 3 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSLRGKF*LPGFPI
Trigger: TATGGGAAACCCAGGAAGCAAAAATTTTCCTCGAAG...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 72 bp CGCTCACAATCTAGTCTTTCAGCACAGGACACCAAATaGGCCTTACTATTTACAAGCCCAAAGCAACATTAC +
Preference number: 3 (lower is better)
Translates to: RSQSSLSAQDTK*ALLFTSPKQHY
Trigger: GTAATGTTGCTTTGGGCTTGTAAATAGTAAGGCTCATTTGGTGTCCTGTGCTGAAAGACTAGATTGTGAGCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR GCA 72 bp AAGTCTAGTATGGTGTTCCTTCATGACGTCAGCTTATaGTCTTTAAGCATGTCCCTCAACATCTCTAGTGGT +
Preference number: 3 (lower is better)
Translates to: KSSMVFLHDVSL*SLSMSLNISSG
Trigger: ACCACTAGAGATGTTGAGGGACATGCTTAAAGAGCATAAGCTGACGTCATGAAGGAACACCATACTAGACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
3UTR CCA 72 bp CGTTCACCAATAAATAGTAAACAAAGAACATCTGGATaGCTCCCTGCTCATAACCAAAGGGCCCTTCATATG +
Preference number: 3 (lower is better)
Translates to: RSPINSKQRTSG*LPAHNQRALHM
Trigger: CATATGAAGGGCCCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGGTGAACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCAAAGCCTTTCAGTCTTaGAGGAAGAGAAGTTTGCTA +
Preference number: 3 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSKAFQS*RKRSLL
Trigger: TAGCAAACTTCTCTTCCTCAAAGACTGAAAGGCTTT...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAATCATATTTGAAGACTTaGGGAGGGTTGTCTGTTCTC +
Preference number: 3 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKSYLKT*GGLSVL
Trigger: GAGAACAGACAACCCTCCCAAAGTCTTCAAATATGA...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CCA 72 bp CAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTaGAGGCAAATATCTTCGAGGAAAATTTTTGCTTCC +
Preference number: 3 (lower is better)
Translates to: QRSASLWPCLQI*RQISSRKIFAS
Trigger: GGAAGCAAAAATTTTCCTCGAAGATATTTGCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp ATTTTCTTCAAGTACTTTCTGTGGGAAGTAAAGATGGAGGCAAAACTGCTGCCACACCACCTGCCAATCTaGACAATAGCATTTCATATT +
Preference number: 3 (lower is better)
Translates to: IFFKYFLWEVKMEAKLLPHHLPI*TIAFHI
Trigger: AATATGAAATGCTATTGTCAAGATTGGCAGGTGGTG...TGGCAGCAGTTTTGCCTCCATCTTTACTTCCCACAGAAAGTACTTGAAGAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCGCCATGTCTTCAAATTaGGAGGCAAATATCTTCGAG +
Preference number: 3 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVAMSSN*EANIFE
Trigger: CTCGAAGATATTTGCCTCCAAATTTGAAGACATGGC...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCTCATATTTGAAGACTTaGGGAGGGTTGTCTGTTCTC +
Preference number: 3 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCSYLKT*GGLSVL
Trigger: GAGAACAGACAACCCTCCCAAAGTCTTCAAATATGA...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR-3UTR CAA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAAAAAGCCTTTCAGTCTTaGAGGAAGAGAAGTTTGCTA +
Preference number: 3 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMEKAFQS*RKRSLL
Trigger: TAGCAAACTTCTCTTCCTCAAAGACTGAAAGGCTTT...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR TCA 72 bp CAAAGGGCCCTTCATATGCATACAAAATCGGCTTTCTaGTGTGTAAACAGGCTCTTTAACATAGAAATCATT +
Preference number: 3 (lower is better)
Translates to: QRALHMHTKSAF*CVNRLFNIEII
Trigger: AATGATTTCTATGTTAAAGAGCCTGTTTACACATCAGAAAGCCGATTTTGTATGCATATGAAGGGCCCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACGTGGCTGCTGCTCTGGTaGTCCTTCCTGCTGGGGAGG +
Preference number: 4 (lower is better)
Translates to: GSSESLGRPQDRPARQTTWLLLW*SFLLGR
Trigger: CCTCCCCAGCAGGAAGGACCACCAGAGCAGCAGCCA...CGTGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCGAGCCGAGCTGCAGCTaGCCGTCCACCCAGCCTTGC +
Preference number: 4 (lower is better)
Translates to: VPPSRALHQMQAFSASSSEPSCS*PSTQPC
Trigger: GCAAGGCTGGGTGGACGGGCAGCTGCAGCTCGGCTC...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACGATAGCTTGGGCGCTGTaGTGCTGCTCAGAAGCCAGG +
Preference number: 4 (lower is better)
Translates to: GSSESLGRPQDRPARQTTIAWAL*CCSEAR
Trigger: CCTGGCTTCTGAGCAGCAGCACAGCGCCCAAGCTAT...CGTGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp AAGAGAACCACCGAACCCAGTGCCTATTTGCTTCGGTCCCACGTCCCACAGACTTGGTGGCTGCTGCTCTaGTGGTCCTTCCTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: KRTTEPSAYLLRSHVPQTWWLLL*WSFLLG
Trigger: CCCCAGCAGGAAGGACCACCAGAGCAGCAGCCACCA...AGTCTGTGGGACGTGGGACCGAAGCAAATAGGCACTGGGTTCGGTGGTTCTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp AAGAGAACCACCGAACCCAGTGCCTATTTGCTTCGGTCCCACGTCCCACAGACTACTCCACGCCCTCCATaGAGATGCAGCTGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: KRTTEPSAYLLRSHVPQTTPRPP*RCSCPR
Trigger: CCTGGGACAGCTGCATCTGCATGGAGGGCGTGGAGT...AGTCTGTGGGACGTGGGACCGAAGCAAATAGGCACTGGGTTCGGTGGTTCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACTCTCTCCAGGGCTTTaGTGTGATTCATGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: EARQRALVGRKTDLRDRPLSPGL*CDSCLL
Trigger: CAGCAGGCATGAATCACACCAAAGCCCTGGAGAGAG...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACGAGGTTAAACATAGCTTaGGCGCTGTGCTGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: GSSESLGRPQDRPARQTTRLNIA*ALCCCS
Trigger: TGAGCAGCAGCACAGCGCCCAAGCTATGTTTAACCT...CGTGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGGTGGTCCTTCCTGCTaGGGAGGAGCCGGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: ECWLPLKDLPLCGHVFKFGGPSC*GGAGRG
Trigger: GCCACGGCCGGCTCCTCCCCAGCAGGAAGGACCACC...AAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACGGTGGTCCTTCCTGCTaGGGAGGAGCCGGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDGGPSC*GGAGRG
Trigger: GCCACGGCCGGCTCCTCCCCAGCAGGAAGGACCACC...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTTCCAGGGCTTTGGTGTaGTTCATGCCTGCTGCCTTC +
Preference number: 4 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFSRALV*FMPAAF
Trigger: GAAGGCAGCAGGCATGAATCACACCAAAGCCCTGGA...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCTGGCACACCACAGTCTaGCATCTTCCCTCCCGTCTG +
Preference number: 4 (lower is better)
Translates to: VPPSRALHQMQAFSASSSWHTTV*HLPSRL
Trigger: CAGACGGGAGGGAAGATGGCAGACTGTGGTGTGCCA...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021347.12
CDS-3UTR GCA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCAGAGGTACTGGACCACTaGAGCATTGTAGTCCTCATC +
Preference number: 4 (lower is better)
Translates to: EARQRALVGRKTDLRDRPEVLDH*SIVVLI
Trigger: GATGAGGACTACAATGCTGCAGTGGTCCAGTACCTC...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCTACTGTGGTGGCTGCTaGTCTGGTGGTCCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: VPPSRALHQMQAFSASSSYCGGC*SGGPSC
Trigger: GCAGGAAGGACCACCAGAGCAGCAGCCACCACAGTA...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATATGCAACTCACATGAGAGCCGGCCGTGGCCCTaGGGGCCTGGGAACTGGTAT +
Preference number: 4 (lower is better)
Translates to: LDHPLASGLGLCICNSHESRPWP*GPGNWY
Trigger: ATACCAGTTCCCAGGCCCCCAGGGCCACGGCCGGCT...CTCATGTGAGTTGCATATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACGTGTACCCAAGAGCAGTaGAATGATGGTCATGAGGTA +
Preference number: 4 (lower is better)
Translates to: GSSESLGRPQDRPARQTTCTQEQ*NDGHEV
Trigger: TACCTCATGACCATCATTGCACTGCTCTTGGGTACA...CGTGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTGACCAGTCTGTCCTTTaGGAGACCCTTCCTCAGTCA +
Preference number: 4 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFDQSVL*ETLPQS
Trigger: TGACTGAGGAAGGGTCTCCCAAAGGACAGACTGGTC...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGGAGGCGCCGACTCACAACTCTaGAGGACTCCGATGCCAGCC +
Preference number: 4 (lower is better)
Translates to: WLPLKDLPLCGHVFKFGGADSQL*RTPMPA
Trigger: GGCTGGCATCGGAGTCCTCCAGAGTTGTGAGTCGGC...GCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACGCATTCTCACCTACAATaGTTGCTTCTCTCTGGTCGA +
Preference number: 4 (lower is better)
Translates to: GSSESLGRPQDRPARQTTHSHLQ*LLLSGR
Trigger: TCGACCAGAGAGAAGCAACCATTGTAGGTGAGAATG...CGTGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TTACACAGACCACAAATTCAGCTTGGGCTTTGGGGTGATTATGTGAAGCTCTCAGGTGGTCCTTCCTGCTaGGGAGGAGCCGGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: LHRPQIQLGLWGDYVKLSGGPSC*GGAGRG
Trigger: GCCACGGCCGGCTCCTCCCCAGCAGGAAGGACCACC...TGAGAGCTTCACATAATCACCCCAAAGCCCAAGCTGAATTTGTGGTCTGTGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCGGTGTGGTCCTTCACTaGCTCATCTGTGGGCAAAGA +
Preference number: 4 (lower is better)
Translates to: VPPSRALHQMQAFSASSSGVVLH*LICGQR
Trigger: TCTTTGCCCACAGATGAGTCAGTGAAGGACCACACC...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTGCCGTCTCATTACTCTaGGGTACGATGTCACTTCCT +
Preference number: 4 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFAVSLL*GTMSLP
Trigger: AGGAAGTGACATCGTACCTCAGAGTAATGAGACGGC...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTTGGCAGGGCTCCCCGTaGGCCGTACCTTCAATGGCA +
Preference number: 4 (lower is better)
Translates to: ECWLPLKDLPLCGHVFKFWQGSP*AVPSMA
Trigger: TGCCATTGAAGGTACGGCGCACGGGGAGCCCTGCCA...AAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021347.12
CDS-3UTR GCA 90 bp TTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATATGCAACTCACATGAGCGCCCTCCATGCAGATaGAGCTGTCCCAGGCCAACC +
Preference number: 4 (lower is better)
Translates to: LDHPLASGLGLCICNSHERPPCR*SCPRPT
Trigger: GGTTGGCCTGGGACAGCTGCATCTGCATGGAGGGCG...CTCATGTGAGTTGCATATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp TTACACAGACCACAAATTCAGCTTGGGCTTTGGGGTGATTATGTGAAGCTCTCAGAGCCGAGCTGCAGCTaGCCGTCCACCCAGCCTTGC +
Preference number: 4 (lower is better)
Translates to: LHRPQIQLGLWGDYVKLSEPSCS*PSTQPC
Trigger: GCAAGGCTGGGTGGACGGGCAGCTGCAGCTCGGCTC...TGAGAGCTTCACATAATCACCCCAAAGCCCAAGCTGAATTTGTGGTCTGTGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp AAGAGAACCACCGAACCCAGTGCCTATTTGCTTCGGTCCCACGTCCCACAGACTAGGTACTTGTGCATCTaGGCTAGCTTCGGCTGCCAT +
Preference number: 4 (lower is better)
Translates to: KRTTEPSAYLLRSHVPQTRYLCI*ASFGCH
Trigger: ATGGCAGCCGAAGCTAGCCCAGATGCACAAGTACCT...AGTCTGTGGGACGTGGGACCGAAGCAAATAGGCACTGGGTTCGGTGGTTCTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TATTTGCTTCGGTCCCACGTCCCACAGACTCTAGGTAAGAGAACAGAGCAAAGCTGGGGGCCTGGGAACTaGTATGTCCTGGTGCTGTCG +
Preference number: 4 (lower is better)
Translates to: YLLRSHVPQTLGKRTEQSWGPGN*YVLVLS
Trigger: CGACAGCACCAGGACATACCAGTTCCCAGGCCCCCA...GCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGGGACGTGGGACCGAAGCAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GGCTGTTTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTGTGGCCCTGGGGGCCTaGGAACTGGTATGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: GCFLISPFRSSSGVWTRAVALGA*ELVCPG
Trigger: ACCAGGACATACCAGTTCCCAGGCCCCCAGGGCCAC...AGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAAACAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTTGGTGGCTGCTGCTCTaGTGGTCCTTCCTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: ECWLPLKDLPLCGHVFKFWWLLL*WSFLLG
Trigger: CCCCAGCAGGAAGGACCACCAGAGCAGCAGCCACCA...AAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCATGCCTGCTGCCTTCTaGAGGTACCGATATGCTTCT +
Preference number: 4 (lower is better)
Translates to: VPPSRALHQMQAFSASSSMPAAF*RYRYAS
Trigger: AGAAGCATATCGGTACCTTCAGAAGGCAGCAGGCAT...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCGAAGGCCATAGCATGTaGATTGCCAGCATTTGCTGC +
Preference number: 4 (lower is better)
Translates to: VPPSRALHQMQAFSASSSEGHSM*IASICC
Trigger: GCAGCAAATGCTGGCAATTCACATGCTATGGCCTTC...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp TATTTGCTTCGGTCCCACGTCCCACAGACTCTAGGTAAGAGAACAGAGCAAAGCAACTCCACTGCAGTGTaGCAGGACCGCATCACCCCT +
Preference number: 4 (lower is better)
Translates to: YLLRSHVPQTLGKRTEQSNSTAV*QDRITP
Trigger: AGGGGTGATGCGGTCCTGTCACACTGCAGTGGAGTT...GCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGGGACGTGGGACCGAAGCAAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp TTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATGCTTGGGCGCTGTGCTaGTGCTCAGAAGCCAGGCGG +
Preference number: 4 (lower is better)
Translates to: FLISPFRSSSGVWTRALYAWALC*CSEARR
Trigger: CCGCCTGGCTTCTGAGCAGCAGCACAGCGCCCAAGC...ATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp AAGGAAAGAGGAAAGCCACTGAGAGTTGTCATTCCGTATGGCACTGAAACAAACGCTTGGGCGCTGTGCTaGTGCTCAGAAGCCAGGCGG +
Preference number: 4 (lower is better)
Translates to: KERGKPLRVVIPYGTETNAWALC*CSEARR
Trigger: CCGCCTGGCTTCTGAGCAGCAGCACAGCGCCCAAGC...GTTTGTTTCAGTGCCATACGGAATGACAACTCTCAGTGGCTTTCCTCTTTCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCATCTAAGGAGTCATCCTaGTTAGTTTTGTCATCCGAG +
Preference number: 4 (lower is better)
Translates to: EARQRALVGRKTDLRDRPSKESS*LVLSSE
Trigger: CTCGGATGACAAAACTAACCAGGATGACTCCTTAGA...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TCATTCCGTATGGCACTGAAACAAACATTCACTGCAGCTCTGCCGAGAGCCGCGCTTCCTCCTGGGTCTTaGAGCTATCTTCCTCGTCCT +
Preference number: 4 (lower is better)
Translates to: SFRMALKQTFTAALPRAALPPGS*SYLPRP
Trigger: AGGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAG...CGCGGCTCTCGGCAGAGCTGCAGTGAATGTTTGTTTCAGTGCCATACGGAATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATATGCAACTCACATGAGGCCGACTCACAACTCTaGAGGACTCCGATGCCAGCC +
Preference number: 4 (lower is better)
Translates to: LDHPLASGLGLCICNSHEADSQL*RTPMPA
Trigger: GGCTGGCATCGGAGTCCTCCAGAGTTGTGAGTCGGC...CTCATGTGAGTTGCATATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCTCGGGTCCCAAAAGCTaGTCCATATCCAGTTGTGTG +
Preference number: 4 (lower is better)
Translates to: VPPSRALHQMQAFSASSSSGPKS*SISSCV
Trigger: CACACAACTGGATATGGACCAGCTTTTGGGACCCGA...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACAACTCCACTGCAGTGTaGCAGGACCGCATCACCCCT +
Preference number: 4 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDNSTAV*QDRITP
Trigger: AGGGGTGATGCGGTCCTGTCACACTGCAGTGGAGTT...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GGCTGTTTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTAACTCCACTGCAGTGTaGCAGGACCGCATCACCCCT +
Preference number: 4 (lower is better)
Translates to: GCFLISPFRSSSGVWTRANSTAV*QDRITP
Trigger: AGGGGTGATGCGGTCCTGTCACACTGCAGTGGAGTT...AGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAAACAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCCTTAAACAACTCCACTaGAGTGTGACAGGACCGCAT +
Preference number: 4 (lower is better)
Translates to: VPPSRALHQMQAFSASSSLKQLH*SVTGPH
Trigger: ATGCGGTCCTGTCACACTGCAGTGGAGTTGTTTAAG...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACATAGCTTGGGCGCTGTaGTGCTGCTCAGAAGCCAGG +
Preference number: 4 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDIAWAL*CCSEAR
Trigger: CCTGGCTTCTGAGCAGCAGCACAGCGCCCAAGCTAT...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGGACCAGTCTGTCCTTTaGGAGACCCTTCCTCAGTCA +
Preference number: 4 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQDQSVL*ETLPQS
Trigger: TGACTGAGGAAGGGTCTCCCAAAGGACAGACTGGTC...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp AAGGAAAGAGGAAAGCCACTGAGAGTTGTCATTCCGTATGGCACTGAAACAAACTGGCTGCTGCTCTGGTaGTCCTTCCTGCTGGGGAGG +
Preference number: 4 (lower is better)
Translates to: KERGKPLRVVIPYGTETNWLLLW*SFLLGR
Trigger: CCTCCCCAGCAGGAAGGACCACCAGAGCAGCAGCCA...GTTTGTTTCAGTGCCATACGGAATGACAACTCTCAGTGGCTTTCCTCTTTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TTACACAGACCACAAATTCAGCTTGGGCTTTGGGGTGATTATGTGAAGCTCTCATGGCTGCTGCTCTGGTaGTCCTTCCTGCTGGGGAGG +
Preference number: 4 (lower is better)
Translates to: LHRPQIQLGLWGDYVKLSWLLLW*SFLLGR
Trigger: CCTCCCCAGCAGGAAGGACCACCAGAGCAGCAGCCA...TGAGAGCTTCACATAATCACCCCAAAGCCCAAGCTGAATTTGTGGTCTGTGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp TATTTGCTTCGGTCCCACGTCCCACAGACTCTAGGTAAGAGAACAGAGCAAAGCATCTTCCCTCCCGTCTaGGGTGCACTCATCATACTC +
Preference number: 4 (lower is better)
Translates to: YLLRSHVPQTLGKRTEQSIFPPV*GALIIL
Trigger: GAGTATGATGAGTGCACCTCAGACGGGAGGGAAGAT...GCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGGGACGTGGGACCGAAGCAAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021347.12
CDS-3UTR TCA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTCCTGGATATTCTGTGTaGGGTAATCACCAAACAAGA +
Preference number: 4 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFPGYSV*GNHQTR
Trigger: TCTTGTTTGGTGATTACCTCACACAGAATATCCAGG...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTAAGCGTTTTGCAAGGTaGATGTCCTGTTTAATGCCT +
Preference number: 4 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFKRFAR*MSCLMP
Trigger: AGGCATTAAACAGGACATTCACCTTGCAAAACGCTT...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp TCATTCCGTATGGCACTGAAACAAACATTCACTGCAGCTCTGCCGAGAGCCGCGCTTTGGTGTGATTCATaGCTGCTGCCTTCTGAAGGT +
Preference number: 4 (lower is better)
Translates to: SFRMALKQTFTAALPRAALWCDS*LLPSEG
Trigger: ACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAG...CGCGGCTCTCGGCAGAGCTGCAGTGAATGTTTGTTTCAGTGCCATACGGAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAACGCCCTCCATGCAGATaGAGCTGTCCCAGGCCAACC +
Preference number: 4 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKRPPCR*SCPRPT
Trigger: GGTTGGCCTGGGACAGCTGCATCTGCATGGAGGGCG...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp TTTCCCCAGGTTGTCAATGCTCAGGACCTTAGAAGACAGGTAAGAAGTTATGCAACTCCACGCCCTCCATaGAGATGCAGCTGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: FPQVVNAQDLRRQVRSYATPRPP*RCSCPR
Trigger: CCTGGGACAGCTGCATCTGCATGGAGGGCGTGGAGT...TGCATAACTTCTTACCTGTCTTCTAAGGTCCTGAGCATTGACAACCTGGGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTCATAATCCACATCAGTaGCAAAGCCATAGAAGTGGT +
Preference number: 4 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFHNPHQ*QSHRSG
Trigger: ACCACTTCTATGGCTTTGGCACTGATGTGGATTATG...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCAGTCATAAAAGCGTTTTaGAAGGTGAATGTCCTGTTT +
Preference number: 4 (lower is better)
Translates to: EARQRALVGRKTDLRDRPVIKAF*KVNVLF
Trigger: AAACAGGACATTCACCTTGCAAAACGCTTTTATGAC...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GTTACTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTACTGTGGTGGCTGCTaGTCTGGTGGTCCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: VTAFPKHPEDVLLGLFCFYCGGC*SGGPSC
Trigger: GCAGGAAGGACCACCAGAGCAGCAGCCACCACAGTA...AAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAGTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTTCACTGACTCATCTGTaGGCAAAGAACTCTTGGAAT +
Preference number: 4 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFSLTHL*AKNSWN
Trigger: ATTCCAAGAGTTCTTTGCCCACAGATGAGTCAGTGA...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TATTTGCTTCGGTCCCACGTCCCACAGACTCTAGGTAAGAGAACAGAGCAAAGCGACCAGTCTGTCCTTTaGGAGACCCTTCCTCAGTCA +
Preference number: 4 (lower is better)
Translates to: YLLRSHVPQTLGKRTEQSDQSVL*ETLPQS
Trigger: TGACTGAGGAAGGGTCTCCCAAAGGACAGACTGGTC...GCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGGGACGTGGGACCGAAGCAAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCGCCGACTCACAACTCTaGAGGACTCCGATGCCAGCC +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSADSQL*RTPMPA
Trigger: GGCTGGCATCGGAGTCCTCCAGAGTTGTGAGTCGGC...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAATGGTGGCTGCTGCTCTaGTGGTCCTTCCTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKWWLLL*WSFLLG
Trigger: CCCCAGCAGGAAGGACCACCAGAGCAGCAGCCACCA...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 72 bp CTTCTTGCGTGTTTTGCAGATGTGGTTGGTCACTGGTaGCAAATGCCACACACACAAGGGGTTGAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: LLACFADVVGHW*QMPHTQGVEVC
Trigger: GCAGACCTCAACCCCTTGTGTGTGTGGCATTTGCAACCAGTGACCAACCACATCTGCAAAACACGCAAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp TGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGGAGGCAGCCTTTGCCTGACTTaGATTAACACCAAGCCCAGA +
Preference number: 4 (lower is better)
Translates to: WLPLKDLPLCGHVFKFGGSLCLT*INTKPR
Trigger: TCTGGGCTTGGTGTTAATTCAAGTCAGGCAAAGGCT...GCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGCTGCCTGTAAGCTATaGCTGTACCCAAGAGCAGTG +
Preference number: 4 (lower is better)
Translates to: ECWLPLKDLPLCGHVFKFAACKL*LYPRAV
Trigger: CACTGCTCTTGGGTACAGTCATAGCTTACAGGCAGC...AAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCCTTAAAGTAGTGAAGTaGCGTCTCATTACTCTGAGG +
Preference number: 4 (lower is better)
Translates to: VPPSRALHQMQAFSASSSLKVVK*RLITLR
Trigger: CCTCAGAGTAATGAGACGGCACTTCACTACTTTAAG...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAAGAGCCGAGCTGCAGCTaGCCGTCCACCCAGCCTTGC +
Preference number: 4 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMEEPSCS*PSTQPC
Trigger: GCAAGGCTGGGTGGACGGGCAGCTGCAGCTCGGCTC...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCGCTTGGGCGCTGTGCTaGTGCTCAGAAGCCAGGCGG +
Preference number: 4 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVAWALC*CSEARR
Trigger: CCGCCTGGCTTCTGAGCAGCAGCACAGCGCCCAAGC...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGTGTAGTCATAGGTTGTaGCACACCACAGTCTGCCAT +
Preference number: 4 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQCSHRL*HTTVCH
Trigger: ATGGCAGACTGTGGTGTGCCACAACCTATGACTACA...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021347.12
CDS-3UTR CCA 90 bp TCATTCCGTATGGCACTGAAACAAACATTCACTGCAGCTCTGCCGAGAGCCGCGCATTCTCACCTACAATaGTTGCTTCTCTCTGGTCGA +
Preference number: 4 (lower is better)
Translates to: SFRMALKQTFTAALPRAAHSHLQ*LLLSGR
Trigger: TCGACCAGAGAGAAGCAACCATTGTAGGTGAGAATG...CGCGGCTCTCGGCAGAGCTGCAGTGAATGTTTGTTTCAGTGCCATACGGAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAAAGCCGGCCGTGGCCCTaGGGGCCTGGGAACTGGTAT +
Preference number: 4 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMESRPWP*GPGNWY
Trigger: ATACCAGTTCCCAGGCCCCCAGGGCCACGGCCGGCT...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTTAGTATTTTAGTAAGCCGGCCGTGGCCCTaGGGGCCTGGGAACTGGTAT +
Preference number: 4 (lower is better)
Translates to: HALGLTHPPLSEYFSILVSRPWP*GPGNWY
Trigger: ATACCAGTTCCCAGGCCCCCAGGGCCACGGCCGGCT...TACTAAAATACTAAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp TTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATTCCAGGGCTTTGGTGTaGTTCATGCCTGCTGCCTTC +
Preference number: 4 (lower is better)
Translates to: FLISPFRSSSGVWTRALYSRALV*FMPAAF
Trigger: GAAGGCAGCAGGCATGAATCACACCAAAGCCCTGGA...ATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGACAAGAGCCTTTGCCTaGCTTGAATTAACACCAAGC +
Preference number: 4 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQTRAFA*LELTPS
Trigger: GCTTGGTGTTAATTCAAGTCAGGCAAAGGCTCTTGT...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGAAGGCCATAGCATGTaGATTGCCAGCATTTGCTGC +
Preference number: 4 (lower is better)
Translates to: ECWLPLKDLPLCGHVFKFEGHSM*IASICC
Trigger: GCAGCAAATGCTGGCAATTCACATGCTATGGCCTTC...AAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTAAGGGATTCCACTTCTaGTTCTTCAGAATCAACAAA +
Preference number: 4 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFKGFHF*FFRINK
Trigger: TTTGTTGATTCTGAAGAAGCAGAAGTGGAATCCCTT...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCCCGTCCACCCAGCCTTaGTCAGCAGCTTTCTGGAAA +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSPSTQP*SAAFWK
Trigger: TTTCCAGAAAGCTGCTGAGCAAGGCTGGGTGGACGG...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGGAGGCCATTCTCACCTACAATaGTTGCTTCTCTCTGGTCGA +
Preference number: 4 (lower is better)
Translates to: WLPLKDLPLCGHVFKFGGHSHLQ*LLLSGR
Trigger: TCGACCAGAGAGAAGCAACCATTGTAGGTGAGAATG...GCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCAATGCAGTAAAGCTCTaGGGTAAGTTTCATTCTCAC +
Preference number: 4 (lower is better)
Translates to: VPPSRALHQMQAFSASSSNAVKL*GKFHSH
Trigger: GTGAGAATGAAACTTACCCCAGAGCTTTACTGCATT...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GTTACTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTAGGTACTTGTGCATCTaGGCTAGCTTCGGCTGCCAT +
Preference number: 4 (lower is better)
Translates to: VTAFPKHPEDVLLGLFCFRYLCI*ASFGCH
Trigger: ATGGCAGCCGAAGCTAGCCCAGATGCACAAGTACCT...AAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAGTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GGCTGTTTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTTCGGGTCCCAAAAGCTaGTCCATATCCAGTTGTGTG +
Preference number: 4 (lower is better)
Translates to: GCFLISPFRSSSGVWTRASGPKS*SISSCV
Trigger: CACACAACTGGATATGGACCAGCTTTTGGGACCCGA...AGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAAACAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 72 bp ACAACGGTGCACCCAGGCCTTTGGTTTTGCCATGCATaGGGTCTAACCCATCCTCCATTGTCTGAGTATTTT +
Preference number: 4 (lower is better)
Translates to: TTVHPGLWFCHA*GLTHPPLSEYF
Trigger: AAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATGGCAAAACCAAAGGCCTGGGTGCACCGTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 72 bp TTCTTGCGTATCTTCTTGCGTGTTTTGCAGATGTGGTaGGTCACTGGTTGCAAATGCCACACACACAAGGGG +
Preference number: 4 (lower is better)
Translates to: FLRIFLRVLQMW*VTGCKCHTHKG
Trigger: CCCCTTGTGTGTGTGGCATTTGCAACCAGTGACCAACCACATCTGCAAAACACGCAAGAAGATACGCAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp TATTTGCTTCGGTCCCACGTCCCACAGACTCTAGGTAAGAGAACAGAGCAAAGCGAGATTCTAAAAAGCTaGTCTCTTCCTCCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: YLLRSHVPQTLGKRTEQSEILKS*SLPPGS
Trigger: AGACCCAGGAGGAAGAGATCAGCTTTTTAGAATCTC...GCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGGGACGTGGGACCGAAGCAAATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp TGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGGAGGCCATTTGCTGCTAAGTTaGAGTAGTCAAACGCTCTCT +
Preference number: 4 (lower is better)
Translates to: WLPLKDLPLCGHVFKFGGHLLLS*SSQTLS
Trigger: AGAGAGCGTTTGACTACTTCAACTTAGCAGCAAATG...GCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAACGCCCTCCATGCAGATaGAGCTGTCCCAGGCCAACC +
Preference number: 4 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMERPPCR*SCPRPT
Trigger: GGTTGGCCTGGGACAGCTGCATCTGCATGGAGGGCG...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGCTTAAAGTAGTGAAGTaGCGTCTCATTACTCTGAGG +
Preference number: 4 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQLKVVK*RLITLR
Trigger: CCTCAGAGTAATGAGACGGCACTTCACTACTTTAAG...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp TTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATATGCAACTCACATGAGTGGGCTAGCTTCGGCTaGCATGTCATAAAAGCGTTT +
Preference number: 4 (lower is better)
Translates to: LDHPLASGLGLCICNSHEWASFG*HVIKAF
Trigger: AAACGCTTTTATGACATGGCAGCCGAAGCTAGCCCA...CTCATGTGAGTTGCATATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CCAATAAATAGTAAACAAAGAACATCTGGATGGCTCCCTGCTCATAACCAAAGGTACTGTGGTGGCTGCTaGTCTGGTGGTCCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: PINSKQRTSGWLPAHNQRYCGGC*SGGPSC
Trigger: GCAGGAAGGACCACCAGAGCAGCAGCCACCACAGTA...CCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGGAGGCTCTAAGGAGTCATCCTaGTTAGTTTTGTCATCCGAG +
Preference number: 4 (lower is better)
Translates to: WLPLKDLPLCGHVFKFGGSKESS*LVLSSE
Trigger: CTCGGATGACAAAACTAACCAGGATGACTCCTTAGA...GCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCCTTCCTCCTGGGTCTTaGAGCTATCTTCCTCGTCCT +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSLPPGS*SYLPRP
Trigger: AGGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAG...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GTTACTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTCTGATCTCTTCCTCCTaGGTCTTGGAGCTATCTTCC +
Preference number: 4 (lower is better)
Translates to: VTAFPKHPEDVLLGLFCFLISSS*VLELSS
Trigger: GGAAGATAGCTCCAAGACCCAGGAGGAAGAGATCAG...AAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAGTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCCTCTCTCCAGGGCTTTaGTGTGATTCATGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSLSPGL*CDSCLL
Trigger: CAGCAGGCATGAATCACACCAAAGCCCTGGAGAGAG...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCATGGTTGCTTCTCTCTaGTCGAGGATGAAGGCTGCG +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSMVASL*SRMKAA
Trigger: CGCAGCCTTCATCCTCGACCAGAGAGAAGCAACCAT...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp TTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATATGGTTGCTTCTCTCTaGTCGAGGATGAAGGCTGCG +
Preference number: 4 (lower is better)
Translates to: FLISPFRSSSGVWTRALYMVASL*SRMKAA
Trigger: CGCAGCCTTCATCCTCGACCAGAGAGAAGCAACCAT...ATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTTAGTATTTTAGTAGTGGCCCTGGGGGCCTaGGAACTGGTATGTCCTGGT +
Preference number: 4 (lower is better)
Translates to: HALGLTHPPLSEYFSILVVALGA*ELVCPG
Trigger: ACCAGGACATACCAGTTCCCAGGCCCCCAGGGCCAC...TACTAAAATACTAAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCATGCCTGCTGCCTTCTaGAGGTACCGATATGCTTCT +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSMPAAF*RYRYAS
Trigger: AGAAGCATATCGGTACCTTCAGAAGGCAGCAGGCAT...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp TTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATGCCGTCTCATTACTCTaGGGTACGATGTCACTTCCT +
Preference number: 4 (lower is better)
Translates to: FLISPFRSSSGVWTRALYAVSLL*GTMSLP
Trigger: AGGAAGTGACATCGTACCTCAGAGTAATGAGACGGC...ATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp TCATTCCGTATGGCACTGAAACAAACATTCACTGCAGCTCTGCCGAGAGCCGCGAAGGGATTCCACTTCTaGTTCTTCAGAATCAACAAA +
Preference number: 4 (lower is better)
Translates to: SFRMALKQTFTAALPRAAKGFHF*FFRINK
Trigger: TTTGTTGATTCTGAAGAAGCAGAAGTGGAATCCCTT...CGCGGCTCTCGGCAGAGCTGCAGTGAATGTTTGTTTCAGTGCCATACGGAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCACTCCACGCCCTCCATaGAGATGCAGCTGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCTPRPP*RCSCPR
Trigger: CCTGGGACAGCTGCATCTGCATGGAGGGCGTGGAGT...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ATTTTCTTCAAGTACTTTCTGTGGGAAGTAAAGATGGAGGCAAAACTGCTGCCACCGTCCACCCAGCCTTaGTCAGCAGCTTTCTGGAAA +
Preference number: 4 (lower is better)
Translates to: IFFKYFLWEVKMEAKLLPPSTQP*SAAFWK
Trigger: TTTCCAGAAAGCTGCTGAGCAAGGCTGGGTGGACGG...TGGCAGCAGTTTTGCCTCCATCTTTACTTCCCACAGAAAGTACTTGAAGAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCGAGGTACTGGACCACTaGAGCATTGTAGTCCTCATC +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSEVLDH*SIVVLI
Trigger: GATGAGGACTACAATGCTGCAGTGGTCCAGTACCTC...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGAATGCAGTAAAGCTCTaGGGTAAGTTTCATTCTCAC +
Preference number: 4 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQNAVKL*GKFHSH
Trigger: GTGAGAATGAAACTTACCCCAGAGCTTTACTGCATT...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAATGGGGGCCTGGGAACTaGTATGTCCTGGTGCTGTCG +
Preference number: 4 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMEWGPGN*YVLVLS
Trigger: CGACAGCACCAGGACATACCAGTTCCCAGGCCCCCA...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCTGGGGGCCTGGGAACTaGTATGTCCTGGTGCTGTCG +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCWGPGN*YVLVLS
Trigger: CGACAGCACCAGGACATACCAGTTCCCAGGCCCCCA...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCCTATCTTCCTCGTCCTaGAGAAGGGATTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSLSSSS*RRDSTS
Trigger: AGAAGTGGAATCCCTTCTTCAGGACGAGGAAGATAG...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACCCTGGATATTCTGTGTaGGGTAATCACCAAACAAGA +
Preference number: 4 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDPGYSV*GNHQTR
Trigger: TCTTGTTTGGTGATTACCTCACACAGAATATCCAGG...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GTTACTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTACAAGAGCCTTTGCCTaGCTTGAATTAACACCAAGC +
Preference number: 4 (lower is better)
Translates to: VTAFPKHPEDVLLGLFCFTRAFA*LELTPS
Trigger: GCTTGGTGTTAATTCAAGTCAGGCAAAGGCTCTTGT...AAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAGTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACCATTTGCTGCTAAGTTaGAGTAGTCAAACGCTCTCT +
Preference number: 4 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDHLLLS*SSQTLS
Trigger: AGAGAGCGTTTGACTACTTCAACTTAGCAGCAAATG...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ATTTTCTTCAAGTACTTTCTGTGGGAAGTAAAGATGGAGGCAAAACTGCTGCCAGCTGCCTGTAAGCTATaGCTGTACCCAAGAGCAGTG +
Preference number: 4 (lower is better)
Translates to: IFFKYFLWEVKMEAKLLPAACKL*LYPRAV
Trigger: CACTGCTCTTGGGTACAGTCATAGCTTACAGGCAGC...TGGCAGCAGTTTTGCCTCCATCTTTACTTCCCACAGAAAGTACTTGAAGAAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp TTTCCCCAGGTTGTCAATGCTCAGGACCTTAGAAGACAGGTAAGAAGTTATGCACTTTGGTGTGATTCATaGCTGCTGCCTTCTGAAGGT +
Preference number: 4 (lower is better)
Translates to: FPQVVNAQDLRRQVRSYALWCDS*LLPSEG
Trigger: ACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAG...TGCATAACTTCTTACCTGTCTTCTAAGGTCCTGAGCATTGACAACCTGGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp TTTCCCCAGGTTGTCAATGCTCAGGACCTTAGAAGACAGGTAAGAAGTTATGCACTTAAACAACTCCACTaGAGTGTGACAGGACCGCAT +
Preference number: 4 (lower is better)
Translates to: FPQVVNAQDLRRQVRSYALKQLH*SVTGPH
Trigger: ATGCGGTCCTGTCACACTGCAGTGGAGTTGTTTAAG...TGCATAACTTCTTACCTGTCTTCTAAGGTCCTGAGCATTGACAACCTGGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp TTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATCTTAAACAACTCCACTaGAGTGTGACAGGACCGCAT +
Preference number: 4 (lower is better)
Translates to: FLISPFRSSSGVWTRALYLKQLH*SVTGPH
Trigger: ATGCGGTCCTGTCACACTGCAGTGGAGTTGTTTAAG...ATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTTAGTATTTTAGTAATAGCTTGGGCGCTGTaGTGCTGCTCAGAAGCCAGG +
Preference number: 4 (lower is better)
Translates to: HALGLTHPPLSEYFSILVIAWAL*CCSEAR
Trigger: CCTGGCTTCTGAGCAGCAGCACAGCGCCCAAGCTAT...TACTAAAATACTAAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCTGGGCTAGCTTCGGCTaGCATGTCATAAAAGCGTTT +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSWASFG*HVIKAF
Trigger: AAACGCTTTTATGACATGGCAGCCGAAGCTAGCCCA...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CCAATAAATAGTAAACAAAGAACATCTGGATGGCTCCCTGCTCATAACCAAAGGCTTCCTCCTGGGTCTTaGAGCTATCTTCCTCGTCCT +
Preference number: 4 (lower is better)
Translates to: PINSKQRTSGWLPAHNQRLPPGS*SYLPRP
Trigger: AGGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAG...CCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACGCATCTGTCGTCTTTTaGCAGCATCTTCTTCAGTTT +
Preference number: 4 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDASVVF*QHLLQF
Trigger: AAACTGAAGAAGATGCTGCCAAAAGACGACAGATGC...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021347.12
CDS-3UTR CCA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAAAGGTTAAACATAGCTTaGGCGCTGTGCTGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKRLNIA*ALCCCS
Trigger: TGAGCAGCAGCACAGCGCCCAAGCTATGTTTAACCT...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAATCGGGTCCCAAAAGCTaGTCCATATCCAGTTGTGTG +
Preference number: 4 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKSGPKS*SISSCV
Trigger: CACACAACTGGATATGGACCAGCTTTTGGGACCCGA...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp GTTACTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTGCATCTGTCGTCTTTTaGCAGCATCTTCTTCAGCTT +
Preference number: 4 (lower is better)
Translates to: VTAFPKHPEDVLLGLFCFASVVF*QHLLQL
Trigger: AAGCTGAAGAAGATGCTGCCAAAAGACGACAGATGC...AAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAGTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 72 bp GTTTTCCTTTGTTCCGGTTACTTCTTGCGTATCTTCTaGCGTGTTTTGCAGATGTGGTTGGTCACTGGTTGC +
Preference number: 4 (lower is better)
Translates to: VFLCSGYFLRIF*RVLQMWLVTGC
Trigger: GCAACCAGTGACCAACCACATCTGCAAAACACGCAAGAAGATACGCAAGAAGTAACCGGAACAAAGGAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCGGTGTGGTCCTTCACTaGCTCATCTGTGGGCAAAGA +
Preference number: 4 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVGVVLH*LICGQR
Trigger: TCTTTGCCCACAGATGAGTCAGTGAAGGACCACACC...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAACTATCTTCCTCGTCCTaGAGAAGGGATTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKLSSSS*RRDSTS
Trigger: AGAAGTGGAATCCCTTCTTCAGGACGAGGAAGATAG...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAATCCAGGGCTTTGGTGTaGTTCATGCCTGCTGCCTTC +
Preference number: 4 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMESRALV*FMPAAF
Trigger: GAAGGCAGCAGGCATGAATCACACCAAAGCCCTGGA...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAAAGCCTTTGCCTGACTTaGATTAACACCAAGCCCAGA +
Preference number: 4 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKSLCLT*INTKPR
Trigger: TCTGGGCTTGGTGTTAATTCAAGTCAGGCAAAGGCT...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp TTACACAGACCACAAATTCAGCTTGGGCTTTGGGGTGATTATGTGAAGCTCTCAACAAGAGCCTTTGCCTaGCTTGAATTAACACCAAGC +
Preference number: 4 (lower is better)
Translates to: LHRPQIQLGLWGDYVKLSTRAFA*LELTPS
Trigger: GCTTGGTGTTAATTCAAGTCAGGCAAAGGCTCTTGT...TGAGAGCTTCACATAATCACCCCAAAGCCCAAGCTGAATTTGTGGTCTGTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GGCTGTTTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTGCTTATAATCTCTCTTaGCTCCAATGCCATTGTAGT +
Preference number: 4 (lower is better)
Translates to: GCFLISPFRSSSGVWTRAAYNLS*LQCHCS
Trigger: ACTACAATGGCATTGGAGTCAAGAGAGATTATAAGC...AGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAAACAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCCTGATAGATCATCTCTaGTTCCTGCATCTGTCGTCT +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSLIDHL*FLHLSS
Trigger: AGACGACAGATGCAGGAAGCAGAGATGATCTATCAG...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCCCGTCCACCCAGCCTTaGTCAGCAGCTTTCTGGAAA +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCPSTQP*SAAFWK
Trigger: TTTCCAGAAAGCTGCTGAGCAAGGCTGGGTGGACGG...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CCAATAAATAGTAAACAAAGAACATCTGGATGGCTCCCTGCTCATAACCAAAGGAGGTTAAACATAGCTTaGGCGCTGTGCTGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: PINSKQRTSGWLPAHNQRRLNIA*ALCCCS
Trigger: TGAGCAGCAGCACAGCGCCCAAGCTATGTTTAACCT...CCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTTAGTATTTTAGTAGGTGTGGTCCTTCACTaGCTCATCTGTGGGCAAAGA +
Preference number: 4 (lower is better)
Translates to: HALGLTHPPLSEYFSILVGVVLH*LICGQR
Trigger: TCTTTGCCCACAGATGAGTCAGTGAAGGACCACACC...TACTAAAATACTAAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAAGAGATTCTAAAAAGCTaGTCTCTTCCTCCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKEILKS*SLPPGS
Trigger: AGACCCAGGAGGAAGAGATCAGCTTTTTAGAATCTC...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp TTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATCCTGGATATTCTGTGTaGGGTAATCACCAAACAAGA +
Preference number: 4 (lower is better)
Translates to: FLISPFRSSSGVWTRALYPGYSV*GNHQTR
Trigger: TCTTGTTTGGTGATTACCTCACACAGAATATCCAGG...ATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCGCCGTCTCATTACTCTaGGGTACGATGTCACTTCCT +
Preference number: 4 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVAVSLL*GTMSLP
Trigger: AGGAAGTGACATCGTACCTCAGAGTAATGAGACGGC...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAAGCTGCCTGTAAGCTATaGCTGTACCCAAGAGCAGTG +
Preference number: 4 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMEAACKL*LYPRAV
Trigger: CACTGCTCTTGGGTACAGTCATAGCTTACAGGCAGC...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GGCTGTTTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTAAGGGATTCCACTTCTaGTTCTTCAGAATCAACAAA +
Preference number: 4 (lower is better)
Translates to: GCFLISPFRSSSGVWTRAKGFHF*FFRINK
Trigger: TTTGTTGATTCTGAAGAAGCAGAAGTGGAATCCCTT...AGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAAACAGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACTTTGGCTCTTCCTATTaGTTCCATTCAGTATCTTCA +
Preference number: 4 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDFGSSY*FHSVSS
Trigger: TGAAGATACTGAATGGAAGCAATAGGAAGAGCCAAA...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp TTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATCATAATCCACATCAGTaGCAAAGCCATAGAAGTGGT +
Preference number: 4 (lower is better)
Translates to: FLISPFRSSSGVWTRALYHNPHQ*QSHRSG
Trigger: ACCACTTCTATGGCTTTGGCACTGATGTGGATTATG...ATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGTCATAAAAGCGTTTTaGAAGGTGAATGTCCTGTTT +
Preference number: 4 (lower is better)
Translates to: ECWLPLKDLPLCGHVFKFVIKAF*KVNVLF
Trigger: AAACAGGACATTCACCTTGCAAAACGCTTTTATGAC...AAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACGTCATAAAAGCGTTTTaGAAGGTGAATGTCCTGTTT +
Preference number: 4 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDVIKAF*KVNVLF
Trigger: AAACAGGACATTCACCTTGCAAAACGCTTTTATGAC...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp CATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTTAGTATTTTAGTACTCTCTCCAGGGCTTTaGTGTGATTCATGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: HALGLTHPPLSEYFSILVLSPGL*CDSCLL
Trigger: CAGCAGGCATGAATCACACCAAAGCCCTGGAGAGAG...TACTAAAATACTAAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCATGGTTGCTTCTCTCTaGTCGAGGATGAAGGCTGCG +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCMVASL*SRMKAA
Trigger: CGCAGCCTTCATCCTCGACCAGAGAGAAGCAACCAT...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 72 bp TTTAGCAAAGCCTTTCAGTCTTTGAGGAAGAGAAGTTaGCTAGGAAGTGTCAGAGTCACAGTACAGGAATCC +
Preference number: 4 (lower is better)
Translates to: FSKAFQSLRKRS*LGSVRVTVQES
Trigger: GGATTCCTGTACTGTGACTCTGACACTTCCTAGCAAACTTCTCTTCCTCAAAGACTGAAAGGCTTTGCTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 72 bp CATCACGAAGAAGTCTTTAGCAAAGCCTTTCAGTCTTaGAGGAAGAGAAGTTTGCTAGGAAGTGTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: HHEEVFSKAFQS*RKRSLLGSVRV
Trigger: GACTCTGACACTTCCTAGCAAACTTCTCTTCCTCAAAGACTGAAAGGCTTTGCTAAAGACTTCTTCGTGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCATGCCTGCTGCCTTCTaGAGGTACCGATATGCTTCT +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCMPAAF*RYRYAS
Trigger: AGAAGCATATCGGTACCTTCAGAAGGCAGCAGGCAT...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAACATTTGCTGCTAAGTTaGAGTAGTCAAACGCTCTCT +
Preference number: 4 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKHLLLS*SSQTLS
Trigger: AGAGAGCGTTTGACTACTTCAACTTAGCAGCAAATG...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCGAAGGCCATAGCATGTaGATTGCCAGCATTTGCTGC +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCEGHSM*IASICC
Trigger: GCAGCAAATGCTGGCAATTCACATGCTATGGCCTTC...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp AAGGAAAGAGGAAAGCCACTGAGAGTTGTCATTCCGTATGGCACTGAAACAAACGCTTATAATCTCTCTTaGCTCCAATGCCATTGTAGT +
Preference number: 4 (lower is better)
Translates to: KERGKPLRVVIPYGTETNAYNLS*LQCHCS
Trigger: ACTACAATGGCATTGGAGTCAAGAGAGATTATAAGC...GTTTGTTTCAGTGCCATACGGAATGACAACTCTCAGTGGCTTTCCTCTTTCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ATTTTCTTCAAGTACTTTCTGTGGGAAGTAAAGATGGAGGCAAAACTGCTGCCACTGATAGATCATCTCTaGTTCCTGCATCTGTCGTCT +
Preference number: 4 (lower is better)
Translates to: IFFKYFLWEVKMEAKLLPLIDHL*FLHLSS
Trigger: AGACGACAGATGCAGGAAGCAGAGATGATCTATCAG...TGGCAGCAGTTTTGCCTCCATCTTTACTTCCCACAGAAAGTACTTGAAGAAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp GTAAATCTAAATCCTAATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCTGGGCTAGCTTCGGCTaGCATGTCATAAAAGCGTTT +
Preference number: 4 (lower is better)
Translates to: VNLNPNAKTPESWSWLNVWASFG*HVIKAF
Trigger: AAACGCTTTTATGACATGGCAGCCGAAGCTAGCCCA...GACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCATTAGGATTTAGATTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAATCTAAGGAGTCATCCTaGTTAGTTTTGTCATCCGAG +
Preference number: 4 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKSKESS*LVLSSE
Trigger: CTCGGATGACAAAACTAACCAGGATGACTCCTTAGA...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCCTGATCTCTTCCTCCTaGGTCTTGGAGCTATCTTCC +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCLISSS*VLELSS
Trigger: GGAAGATAGCTCCAAGACCCAGGAGGAAGAGATCAG...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 72 bp CTAGTCTCAGACTTAAGCATGTTTTTAGGGTTAAACTaGCAACTAACTGGGTTTCCCCAGGTTGTCAATGCT +
Preference number: 4 (lower is better)
Translates to: LVSDLSMFLGLN*QLTGFPQVVNA
Trigger: AGCATTGACAACCTGGGGAAACCCAGTTAGTTGCAAGTTTAACCCTAAAAACATGCTTAAGTCTGAGACTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCAGCCTTTGCCTGACTTaGATTAACACCAAGCCCAGA +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCSLCLT*INTKPR
Trigger: TCTGGGCTTGGTGTTAATTCAAGTCAGGCAAAGGCT...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCTTTGGCTCTTCCTATTaGTTCCATTCAGTATCTTCA +
Preference number: 4 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSFGSSY*FHSVSS
Trigger: TGAAGATACTGAATGGAAGCAATAGGAAGAGCCAAA...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTTAGTATTTTAGTACTTTGGTGTGATTCATaGCTGCTGCCTTCTGAAGGT +
Preference number: 4 (lower is better)
Translates to: HALGLTHPPLSEYFSILVLWCDS*LLPSEG
Trigger: ACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAG...TACTAAAATACTAAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTTAGTATTTTAGTAGAGATTCTAAAAAGCTaGTCTCTTCCTCCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: HALGLTHPPLSEYFSILVEILKS*SLPPGS
Trigger: AGACCCAGGAGGAAGAGATCAGCTTTTTAGAATCTC...TACTAAAATACTAAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ATTTTCTTCAAGTACTTTCTGTGGGAAGTAAAGATGGAGGCAAAACTGCTGCCAGCTTATAATCTCTCTTaGCTCCAATGCCATTGTAGT +
Preference number: 4 (lower is better)
Translates to: IFFKYFLWEVKMEAKLLPAYNLS*LQCHCS
Trigger: ACTACAATGGCATTGGAGTCAAGAGAGATTATAAGC...TGGCAGCAGTTTTGCCTCCATCTTTACTTCCCACAGAAAGTACTTGAAGAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAACTGATAGATCATCTCTaGTTCCTGCATCTGTCGTCT +
Preference number: 4 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMELIDHL*FLHLSS
Trigger: AGACGACAGATGCAGGAAGCAGAGATGATCTATCAG...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAATTTGGCTCTTCCTATTaGTTCCATTCAGTATCTTCA +
Preference number: 4 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKFGSSY*FHSVSS
Trigger: TGAAGATACTGAATGGAAGCAATAGGAAGAGCCAAA...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CCAATAAATAGTAAACAAAGAACATCTGGATGGCTCCCTGCTCATAACCAAAGGGCGGTAATGAATAAATaGGGTCTCATAATCCACATC +
Preference number: 4 (lower is better)
Translates to: PINSKQRTSGWLPAHNQRAVMNK*GLIIHI
Trigger: GATGTGGATTATGAGACCGCATTTATTCATTACCGC...CCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021347.12
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ATTTTCTTCAAGTACTTTCTGTGGGAAGTAAAGATGGAGGCAAAACTGCTGCCAGCGGTAATGAATAAATaGGGTCTCATAATCCACATC +
Preference number: 4 (lower is better)
Translates to: IFFKYFLWEVKMEAKLLPAVMNK*GLIIHI
Trigger: GATGTGGATTATGAGACCGCATTTATTCATTACCGC...TGGCAGCAGTTTTGCCTCCATCTTTACTTCCCACAGAAAGTACTTGAAGAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAATGTACCCAAGAGCAGTaGAATGATGGTCATGAGGTA +
Preference number: 4 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMECTQEQ*NDGHEV
Trigger: TACCTCATGACCATCATTGCACTGCTCTTGGGTACA...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCGCATCTGTCGTCTTTTaGCAGCATCTTCTTCAGCTT +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCASVVF*QHLLQL
Trigger: AAGCTGAAGAAGATGCTGCCAAAAGACGACAGATGC...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167466.2
ENSMUST00000178462.8
3UTR CAA 72 bp TCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTaGGAGGCAAATATCTTCGAGGAAAATTTTTGCTTC +
Preference number: 4 (lower is better)
Translates to: SKICLSVAMSSN*EANIFEENFCF
Trigger: GAAGCAAAAATTTTCCTCGAAGATATTTGCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCAAGCGTTTTGCAAGGTaGATGTCCTGTTTAATGCCT +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCKRFAR*MSCLMP
Trigger: AGGCATTAAACAGGACATTCACCTTGCAAAACGCTT...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR TCA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAAAAGCGTTTTGCAAGGTaGATGTCCTGTTTAATGCCT +
Preference number: 4 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMEKRFAR*MSCLMP
Trigger: AGGCATTAAACAGGACATTCACCTTGCAAAACGCTT...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCCTTAAAGTAGTGAAGTaGCGTCTCATTACTCTGAGG +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCLKVVK*RLITLR
Trigger: CCTCAGAGTAATGAGACGGCACTTCACTACTTTAAG...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCCATAATCCACATCAGTaGCAAAGCCATAGAAGTGGT +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCHNPHQ*QSHRSG
Trigger: ACCACTTCTATGGCTTTGGCACTGATGTGGATTATG...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCTCACTGACTCATCTGTaGGCAAAGAACTCTTGGAAT +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCSLTHL*AKNSWN
Trigger: ATTCCAAGAGTTCTTTGCCCACAGATGAGTCAGTGA...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR GCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCGCGGTAATGAATAAATaGGGTCTCATAATCCACATC +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCAVMNK*GLIIHI
Trigger: GATGTGGATTATGAGACCGCATTTATTCATTACCGC...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CCA 90 bp ACATTCAAACTCAAAGCTTTCCAAACTCCACAAGTGATAAAGTCGTTTCATTGCAATGCAGTAAAGCTCTaGGGTAAGTTTCATTCTCAC +
Preference number: 4 (lower is better)
Translates to: TFKLKAFQTPQVIKSFHCNAVKL*GKFHSH
Trigger: GTGAGAATGAAACTTACCCCAGAGCTTTACTGCATT...GCAATGAAACGACTTTATCACTTGTGGAGTTTGGAAAGCTTTGAGTTTGAATGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACGTCTTCCTCCTGGGTCTaGGAGCTATCTTCCTCGTCC +
Preference number: 5 (lower is better)
Translates to: GSSESLGRPQDRPARQTTSSSWV*ELSSSS
Trigger: GGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAGA...CGTGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACGGAGGAACACAGGTACTaGTGCATCTGGGCTAGCTTC +
Preference number: 5 (lower is better)
Translates to: GSSESLGRPQDRPARQTTEEHRY*CIWASF
Trigger: GAAGCTAGCCCAGATGCACAAGTACCTGTGTTCCTC...CGTGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp AAGAGAACCACCGAACCCAGTGCCTATTTGCTTCGGTCCCACGTCCCACAGACTCAGGCCAACCTGTGCTaGGACGTCACCCTTCTCAGC +
Preference number: 5 (lower is better)
Translates to: KRTTEPSAYLLRSHVPQTQANLC*DVTLLS
Trigger: GCTGAGAAGGGTGACGTCCAAGCACAGGTTGGCCTG...AGTCTGTGGGACGTGGGACCGAAGCAAATAGGCACTGGGTTCGGTGGTTCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCAGCCACAGTGTAACCTaGGGAGGCGGCCCTGTTCCA +
Preference number: 5 (lower is better)
Translates to: VPPSRALHQMQAFSASSSSHSVT*GGGPVP
Trigger: TGGAACAGGGCCGCCTCCCAAGGTTACACTGTGGCT...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp AGTGTGACAGGACCGCATCACCCCTGTGCCGCTGGCGTGCATCTGTaGGAGGTTATAGAAAGCCAAGATATGGCCTCCTTGAGAAGCCAG +
Preference number: 5 (lower is better)
Translates to: SVTGPHHPCAAGVHL*EVIESQDMASLRSQ
Trigger: CTGGCTTCTCAAGGAGGCCATATCTTGGCTTTCTATAACCTCGCACAGATGCACGCCAGCGGCACAGGGGTGATGCGGTCCTGTCACACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 90 bp ACAACTCCACTGCAGTGTGACAGGACCGCATCACCCCTGTGCCGCTaGCGTGCATCTGTGCGAGGTTATAGAAAGCCAAGATATGGCCTC +
Preference number: 5 (lower is better)
Translates to: TTPLQCDRTASPLCR*RASVRGYRKPRYGL
Trigger: GAGGCCATATCTTGGCTTTCTATAACCTCGCACAGATGCACGCCAGCGGCACAGGGGTGATGCGGTCCTGTCACACTGCAGTGGAGTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTTCTTCCTCCTGGGTCTaGGAGCTATCTTCCTCGTCC +
Preference number: 5 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFSSSWV*ELSSSS
Trigger: GGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAGA...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTAGACCAGTCTGTCCTTaGGGAGACCCTTCCTCAGTC +
Preference number: 5 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFRPVCP*GDPSSV
Trigger: GACTGAGGAAGGGTCTCCCAAAGGACAGACTGGTCT...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCATCTCACCTACAATGGTaGCTTCTCTCTGGTCGAGGA +
Preference number: 5 (lower is better)
Translates to: EARQRALVGRKTDLRDRPSHLQW*LLSGRG
Trigger: TCCTCGACCAGAGAGAAGCAACCATTGTAGGTGAGA...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp CGCCACCTCGTAGCCCTGCTCAGCCAGCAGGAGGTACTGGACCACTaGAGCATTGTAGTCCTCATCCTTATAGCTGTTGTAGGCAGTCAT +
Preference number: 5 (lower is better)
Translates to: RHLVALLSQQEVLDH*SIVVLILIAVVGSH
Trigger: ATGACTGCCTACAACAGCTATAAGGATGAGGACTACAATGCTGCAGTGGTCCAGTACCTCCTGCTGGCTGAGCAGGGCTACGAGGTGGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGCAGGCCAACCTGTGCTaGGACGTCACCCTTCTCAGC +
Preference number: 5 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQQANLC*DVTLLS
Trigger: GCTGAGAAGGGTGACGTCCAAGCACAGGTTGGCCTG...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp GACGATAATGGGTCAGTGCCGACTCACAACTCTGGAGGACTCCGATaGCAGCCCAGTAGCGGTAACCCAAAATCATATGGGCTATCAGGT +
Preference number: 5 (lower is better)
Translates to: DDNGSVPTHNSGGLR*QPSSGNPKSYGLSG
Trigger: ACCTGATAGCCCATATGATTTTGGGTTACCGCTACTGGGCTGGCATCGGAGTCCTCCAGAGTTGTGAGTCGGCACTGACCCATTATCGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp CTGGTGCTGTCGCTGCCTGTAAGCTATGACTGTACCCAAGAGCAGTaGAATGATGGTCATGAGGTAAAGGTCCCACTCGGGTCCCAAAAG +
Preference number: 5 (lower is better)
Translates to: LVLSLPVSYDCTQEQ*NDGHEVKVPLGSQK
Trigger: CTTTTGGGACCCGAGTGGGACCTTTACCTCATGACCATCATTGCACTGCTCTTGGGTACAGTCATAGCTTACAGGCAGCGACAGCACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GGCTGTTTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTCAGGCCAACCTGTGCTaGGACGTCACCCTTCTCAGC +
Preference number: 5 (lower is better)
Translates to: GCFLISPFRSSSGVWTRAQANLC*DVTLLS
Trigger: GCTGAGAAGGGTGACGTCCAAGCACAGGTTGGCCTG...AGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAAACAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACCTCTGTCCCACGGGGTaGCCCATGTCAGCAGCTTTC +
Preference number: 5 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDLCPTG*PMSAAF
Trigger: GAAAGCTGCTGACATGGGCAACCCCGTGGGACAGAG...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GTGCCACCATCCAGAGCCCTACATCAAATGCAAGCGTTCTCAGCAAGCAGCTCCTCTCACCTACAATGGTaGCTTCTCTCTGGTCGAGGA +
Preference number: 5 (lower is better)
Translates to: VPPSRALHQMQAFSASSSSHLQW*LLSGRG
Trigger: TCCTCGACCAGAGAGAAGCAACCATTGTAGGTGAGA...GGAGCTGCTTGCTGAGAACGCTTGCATTTGATGTAGGGCTCTGGATGGTGGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp GATATCACTAGCAACATGATTGGCAACAAGACGATAATGGGTCAGTaGCGACTCACAACTCTGGAGGACTCCGATGCCAGCCCAGTAGCG +
Preference number: 5 (lower is better)
Translates to: DITSNMIGNKTIMGQ*RLTTLEDSDASPVA
Trigger: CGCTACTGGGCTGGCATCGGAGTCCTCCAGAGTTGTGAGTCGGCACTGACCCATTATCGTCTTGTTGCCAATCATGTTGCTAGTGATATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GAGGCTCGTCAGAGAGCCTTGGTAGGCCGCAAGACAGACCTGCGAGACAGACCACAAGATATGGCCTCCTaGAGAAGCCAGATTAAAATA +
Preference number: 5 (lower is better)
Translates to: EARQRALVGRKTDLRDRPQDMAS*RSQIKI
Trigger: TATTTTAATCTGGCTTCTCAAGGAGGCCATATCTTG...TGGTCTGTCTCGCAGGTCTGTCTTGCGGCCTACCAAGGCTCTCTGACGAGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GGCTGTTTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTAGACCAGTCTGTCCTTaGGGAGACCCTTCCTCAGTC +
Preference number: 5 (lower is better)
Translates to: GCFLISPFRSSSGVWTRARPVCP*GDPSSV
Trigger: GACTGAGGAAGGGTCTCCCAAAGGACAGACTGGTCT...AGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAAACAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp TGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGGAGGCATATGGGCTATCAGGTaGCCTCCAAGAGCTCCGAAA +
Preference number: 5 (lower is better)
Translates to: WLPLKDLPLCGHVFKFGGIWAIR*PPRAPK
Trigger: TTTCGGAGCTCTTGGAGGCAACCTGATAGCCCATAT...GCCTCCAAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp TTTCCCCAGGTTGTCAATGCTCAGGACCTTAGAAGACAGGTAAGAAGTTATGCACTCTGTCCCACGGGGTaGCCCATGTCAGCAGCTTTC +
Preference number: 5 (lower is better)
Translates to: FPQVVNAQDLRRQVRSYALCPTG*PMSAAF
Trigger: GAAAGCTGCTGACATGGGCAACCCCGTGGGACAGAG...TGCATAACTTCTTACCTGTCTTCTAAGGTCCTGAGCATTGACAACCTGGGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCCTCTGTCCCACGGGGTaGCCCATGTCAGCAGCTTTC +
Preference number: 5 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSLCPTG*PMSAAF
Trigger: GAAAGCTGCTGACATGGGCAACCCCGTGGGACAGAG...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp TTACACAGACCACAAATTCAGCTTGGGCTTTGGGGTGATTATGTGAAGCTCTCAAGCCACAGTGTAACCTaGGGAGGCGGCCCTGTTCCA +
Preference number: 5 (lower is better)
Translates to: LHRPQIQLGLWGDYVKLSSHSVT*GGGPVP
Trigger: TGGAACAGGGCCGCCTCCCAAGGTTACACTGTGGCT...TGAGAGCTTCACATAATCACCCCAAAGCCCAAGCTGAATTTGTGGTCTGTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCAGCCACAGTGTAACCTaGGGAGGCGGCCCTGTTCCA +
Preference number: 5 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSSHSVT*GGGPVP
Trigger: TGGAACAGGGCCGCCTCCCAAGGTTACACTGTGGCT...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp AGCATAGGACACTCTCTCCAGGGCTTTGGTGTGATTCATGCCTGCTaGCTTCTGAAGGTACCGATATGCTTCTCTCTTTTGGCTCTTCCT +
Preference number: 5 (lower is better)
Translates to: SIGHSLQGFGVIHAC*LLKVPICFSLLALP
Trigger: AGGAAGAGCCAAAAGAGAGAAGCATATCGGTACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAGCCCTGGAGAGAGTGTCCTATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp GAGAGCATAGGACACTCTCTCCAGGGCTTTGGTGTGATTCATGCCTaGTGCCTTCTGAAGGTACCGATATGCTTCTCTCTTTTGGCTCTT +
Preference number: 5 (lower is better)
Translates to: ESIGHSLQGFGVIHA*CLLKVPICFSLLAL
Trigger: AAGAGCCAAAAGAGAGAAGCATATCGGTACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAGCCCTGGAGAGAGTGTCCTATGCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp ACAAGAGAGCATAGGACACTCTCTCCAGGGCTTTGGTGTGATTCATaGCTGCTGCCTTCTGAAGGTACCGATATGCTTCTCTCTTTTGGC +
Preference number: 5 (lower is better)
Translates to: TREHRTLSPGLWCDS*LLPSEGTDMLLSFG
Trigger: GCCAAAAGAGAGAAGCATATCGGTACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAGCCCTGGAGAGAGTGTCCTATGCTCTCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp TTGGGCGCTGTGCTGCTGCTCAGAAGCCAGGCGGTAATGAATAAATaGGGTCTCATAATCCACATCAGTGCCAAAGCCATAGAAGTGGTA +
Preference number: 5 (lower is better)
Translates to: LGAVLLLRSQAVMNK*GLIIHISAKAIEVV
Trigger: TACCACTTCTATGGCTTTGGCACTGATGTGGATTATGAGACCGCATTTATTCATTACCGCCTGGCTTCTGAGCAGCAGCACAGCGCCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 90 bp CAGTGTAACCTTGGGAGGCGGCCCTGTTCCAATGCAGTAAAGCTCTaGGGTAAGTTTCATTCTCACCTACAATGGTTGCTTCTCTCTGGT +
Preference number: 5 (lower is better)
Translates to: QCNLGRRPCSNAVKL*GKFHSHLQWLLLSG
Trigger: ACCAGAGAGAAGCAACCATTGTAGGTGAGAATGAAACTTACCCCAGAGCTTTACTGCATTGGAACAGGGCCGCCTCCCAAGGTTACACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GTTACTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTCAGGTTAAACATAGCTaGGGCGCTGTGCTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: VTAFPKHPEDVLLGLFCFQVKHS*GAVLLL
Trigger: GAGCAGCAGCACAGCGCCCAAGCTATGTTTAACCTG...AAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAGTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp CTACCCGAGGGAGGGCATGTCCCAGGTCCCACCTCAAGTTGGTTAAGGCTGTTTTGTCATAAAAGCGTTTaGCAAGGTGAATGTCCTGTT +
Preference number: 5 (lower is better)
Translates to: LPEGGHVPGPTSSWLRLFCHKSV*QGECPV
Trigger: AACAGGACATTCACCTTGCAAAACGCTTTTATGACA...AAACAGCCTTAACCAACTTGAGGTGGGACCTGGGACATGCCCTCCCTCGGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS TCA 90 bp GTAGTCCTCATCCTTATAGCTGTTGTAGGCAGTCATCAGTCTCTCTaGCCAGCGACCTCGCTCACACACATTCTTAAACAACTCCACTGC +
Preference number: 5 (lower is better)
Translates to: VVLILIAVVGSHQSL*PATSLTHILKQLHC
Trigger: GCAGTGGAGTTGTTTAAGAATGTGTGTGAGCGAGGTCGCTGGTCAGAGAGACTGATGACTGCCTACAACAGCTATAAGGATGAGGACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp ACTTCTCATCTGTCTTGTAGTCATAGGTTGTGGCACACCACAGTCTaGCATCTTCCCTCCCGTCTGAGGTGCACTCATCATACTCCTTAT +
Preference number: 5 (lower is better)
Translates to: TSHLSCSHRLWHTTV*HLPSRLRCTHHTPY
Trigger: ATAAGGAGTATGATGAGTGCACCTCAGACGGGAGGGAAGATGGCAGACTGTGGTGTGCCACAACCTATGACTACAAGACAGATGAGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021347.12
CDS CCA 90 bp GGTAATCACCAAACAAGAGAGCATAGGACACTCTCTCCAGGGCTTTaGTGTGATTCATGCCTGCTGCCTTCTGAAGGTACCGATATGCTT +
Preference number: 5 (lower is better)
Translates to: GNHQTREHRTLSPGL*CDSCLLPSEGTDML
Trigger: AAGCATATCGGTACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAGCCCTGGAGAGAGTGTCCTATGCTCTCTTGTTTGGTGATTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 90 bp CTTCCTGCATCTGTCGTCTTTTGGCAGCATCTTCTTCAGCTTCAATaGCAGTCAAGACTGGCTTCCGCACTCTCTTTAGTTCTTCGTAGG +
Preference number: 5 (lower is better)
Translates to: LPASVVFWQHLLQLQ*QSRLASALSLVLRR
Trigger: CCTACGAAGAACTAAAGAGAGTGCGGAAGCCAGTCTTGACTGCCATTGAAGCTGAAGAAGATGCTGCCAAAAGACGACAGATGCAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167466.2
CDS-3UTR CAA 90 bp AAGGAAAGAGGAAAGCCACTGAGAGTTGTCATTCCGTATGGCACTGAAACAAACTCTTCCTCCTGGGTCTaGGAGCTATCTTCCTCGTCC +
Preference number: 5 (lower is better)
Translates to: KERGKPLRVVIPYGTETNSSSWV*ELSSSS
Trigger: GGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAGA...GTTTGTTTCAGTGCCATACGGAATGACAACTCTCAGTGGCTTTCCTCTTTCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGTGCATCTGTCGTCTTTaGGCAGCATCTTCTTCAGTT +
Preference number: 5 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQCICRL*AASSSV
Trigger: AACTGAAGAAGATGCTGCCAAAAGACGACAGATGCA...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021347.12
CDS-3UTR CAA 90 bp TTACACAGACCACAAATTCAGCTTGGGCTTTGGGGTGATTATGTGAAGCTCTCACAGGTTAAACATAGCTaGGGCGCTGTGCTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: LHRPQIQLGLWGDYVKLSQVKHS*GAVLLL
Trigger: GAGCAGCAGCACAGCGCCCAAGCTATGTTTAACCTG...TGAGAGCTTCACATAATCACCCCAAAGCCCAAGCTGAATTTGTGGTCTGTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp AAGGAAAGAGGAAAGCCACTGAGAGTTGTCATTCCGTATGGCACTGAAACAAACCAGGTTAAACATAGCTaGGGCGCTGTGCTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: KERGKPLRVVIPYGTETNQVKHS*GAVLLL
Trigger: GAGCAGCAGCACAGCGCCCAAGCTATGTTTAACCTG...GTTTGTTTCAGTGCCATACGGAATGACAACTCTCAGTGGCTTTCCTCTTTCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS TCA 90 bp GTTCTTCGTAGGTCTTGCTGCTTGGATTCGGAGATTCTAAAAAGCTaGTCTCTTCCTCCTGGGTCTTGGAGCTATCTTCCTCGTCCTGAA +
Preference number: 5 (lower is better)
Translates to: VLRRSCCLDSEILKS*SLPPGSWSYLPRPE
Trigger: TTCAGGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAGAGATCAGCTTTTTAGAATCTCCGAATCCAAGCAGCAAGACCTACGAAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp TGCCAGCCCAGTAGCGGTAACCCAAAATCATATGGGCTATCAGGTTaGCTCCAAGAGCTCCGAAAGTATAATATACAAGAGCCTTTGCCT +
Preference number: 5 (lower is better)
Translates to: CQPSSGNPKSYGLSG*LQELRKYNIQEPLP
Trigger: AGGCAAAGGCTCTTGTATATTATACTTTCGGAGCTCTTGGAGGCAACCTGATAGCCCATATGATTTTGGGTTACCGCTACTGGGCTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp TCCCACGGGGTTGCCCATGTCAGCAGCTTTCTTAAAGTAGTGAAGTaGCGTCTCATTACTCTGAGGTACGATGTCACTTCCTTCAGAATA +
Preference number: 5 (lower is better)
Translates to: SHGVAHVSSFLKVVK*RLITLRYDVTSFRI
Trigger: TATTCTGAAGGAAGTGACATCGTACCTCAGAGTAATGAGACGGCACTTCACTACTTTAAGAAAGCTGCTGACATGGGCAACCCCGTGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 90 bp GAATCAACAAATATCTGGCCAGCAACTACTTTGCCCGTGGTGGTGTaGTCCTTCACTGACTCATCTGTGGGCAAAGAACTCTTGGAATCT +
Preference number: 5 (lower is better)
Translates to: ESTNIWPATTLPVVV*SFTDSSVGKELLES
Trigger: AGATTCCAAGAGTTCTTTGCCCACAGATGAGTCAGTGAAGGACCACACCACCACGGGCAAAGTAGTTGCTGGCCAGATATTTGTTGATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAAAGACCAGTCTGTCCTTaGGGAGACCCTTCCTCAGTC +
Preference number: 5 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKRPVCP*GDPSSV
Trigger: GACTGAGGAAGGGTCTCCCAAAGGACAGACTGGTCT...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GAATGCTGGCTGCCTCTCAAAGATCTGCCTCTCTGTGGCCATGTCTTCAAATTTGCCATAGCATGTGAATaGCCAGCATTTGCTGCTAAG +
Preference number: 5 (lower is better)
Translates to: ECWLPLKDLPLCGHVFKFAIACE*PAFAAK
Trigger: CTTAGCAGCAAATGCTGGCAATTCACATGCTATGGC...AAATTTGAAGACATGGCCACAGAGAGGCAGATCTTTGAGAGGCAGCCAGCATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GGCTGTTTTCTGATTTCTCCATTTAGATCATCCTCTGGCGTCTGGACTAGGGCTGCCATAGCATGTGAATaGCCAGCATTTGCTGCTAAG +
Preference number: 5 (lower is better)
Translates to: GCFLISPFRSSSGVWTRAAIACE*PAFAAK
Trigger: CTTAGCAGCAAATGCTGGCAATTCACATGCTATGGC...AGCCCTAGTCCAGACGCCAGAGGATGATCTAAATGGAGAAATCAGAAAACAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp TTTCCCCAGGTTGTCAATGCTCAGGACCTTAGAAGACAGGTAAGAAGTTATGCAGAGGAACACAGGTACTaGTGCATCTGGGCTAGCTTC +
Preference number: 5 (lower is better)
Translates to: FPQVVNAQDLRRQVRSYAEEHRY*CIWASF
Trigger: GAAGCTAGCCCAGATGCACAAGTACCTGTGTTCCTC...TGCATAACTTCTTACCTGTCTTCTAAGGTCCTGAGCATTGACAACCTGGGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCGAGGAACACAGGTACTaGTGCATCTGGGCTAGCTTC +
Preference number: 5 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSEEHRY*CIWASF
Trigger: GAAGCTAGCCCAGATGCACAAGTACCTGTGTTCCTC...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS TCA 90 bp CAGTCAGTTTCTCAAACATCTCTTTGGCTGCCTGGATATTCTGTGTaGGGTAATCACCAAACAAGAGAGCATAGGACACTCTCTCCAGGG +
Preference number: 5 (lower is better)
Translates to: QSVSQTSLWLPGYSV*GNHQTREHRTLSPG
Trigger: CCCTGGAGAGAGTGTCCTATGCTCTCTTGTTTGGTGATTACCTCACACAGAATATCCAGGCAGCCAAAGAGATGTTTGAGAAACTGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp ATTGCTTCCATTCAGTATCTTCATCCCGGCCTGATAGATCATCTCTaGTTCCTGCATCTGTCGTCTTTTGGCAGCATCTTCTTCAGCTTC +
Preference number: 5 (lower is better)
Translates to: IASIQYLHPGLIDHL*FLHLSSFGSIFFSF
Trigger: GAAGCTGAAGAAGATGCTGCCAAAAGACGACAGATGCAGGAAGCAGAGATGATCTATCAGGCCGGGATGAAGATACTGAATGGAAGCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167466.2
CDS-3UTR CAA 90 bp GCAAAGCGCTTGAGATCATCTAGGAAAGCAGCAGCGAGAACTGAGTTCTCGCAGTTTTGGCTCTTCCTATaGCTTCCATTCAGTATCTTC +
Preference number: 5 (lower is better)
Translates to: AKRLRSSRKAAARTEFSQFWLFL*LPFSIF
Trigger: GAAGATACTGAATGGAAGCAATAGGAAGAGCCAAAA...CTGCGAGAACTCAGTTCTCGCTGCTGCTTTCCTAGATGATCTCAAGCGCTTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCATATGGGCTATCAGGTaGCCTCCAAGAGCTCCGAAA +
Preference number: 5 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSIWAIR*PPRAPK
Trigger: TTTCGGAGCTCTTGGAGGCAACCTGATAGCCCATAT...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp AAGGAAAGAGGAAAGCCACTGAGAGTTGTCATTCCGTATGGCACTGAAACAAACTCTCACCTACAATGGTaGCTTCTCTCTGGTCGAGGA +
Preference number: 5 (lower is better)
Translates to: KERGKPLRVVIPYGTETNSHLQW*LLSGRG
Trigger: TCCTCGACCAGAGAGAAGCAACCATTGTAGGTGAGA...GTTTGTTTCAGTGCCATACGGAATGACAACTCTCAGTGGCTTTCCTCTTTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS TCA 90 bp AAGCTGATCTCTTCCTCCTGGGTCTTGGAGCTATCTTCCTCGTCCTaGAGAAGGGATTCCACTTCTGCTTCTTCAGAATCAACAAATATC +
Preference number: 5 (lower is better)
Translates to: KLISSSWVLELSSSS*RRDSTSASSESTNI
Trigger: GATATTTGTTGATTCTGAAGAAGCAGAAGTGGAATCCCTTCTTCAGGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAGAGATCAGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp ATTGCTTCCATTCAGTATCTTCATCCCGGCCTGATAGATCATCTCTaGTTCCTGCATCTGTCGTCTTTTGGCAGCATCTTCTTCAGTTTC +
Preference number: 5 (lower is better)
Translates to: IASIQYLHPGLIDHL*FLHLSSFGSIFFSF
Trigger: GAAACTGAAGAAGATGCTGCCAAAAGACGACAGATGCAGGAAGCAGAGATGATCTATCAGGCCGGGATGAAGATACTGAATGGAAGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021347.12
CDS GCA 90 bp CCTTCTGAAGGTACCGATATGCTTCTCTCTTTTGGCTCTTCCTATTaGTTCCATTCAGTATCTTCATCCCGGCCTGATAGATCATCTCTG +
Preference number: 5 (lower is better)
Translates to: PSEGTDMLLSFGSSY*FHSVSSSRPDRSSL
Trigger: CAGAGATGATCTATCAGGCCGGGATGAAGATACTGAATGGAAGCAATAGGAAGAGCCAAAAGAGAGAAGCATATCGGTACCTTCAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp GGCTTTGGTGTGATTCATGCCTGCTGCCTTCTGAAGGTACCGATATaGTTCTCTCTTTTGGCTCTTCCTATTGCTTCCATTCAGTATCTT +
Preference number: 5 (lower is better)
Translates to: GFGVIHACCLLKVPI*FSLLALPIASIQYL
Trigger: AAGATACTGAATGGAAGCAATAGGAAGAGCCAAAAGAGAGAAGCATATCGGTACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 90 bp ATTGCTTCCATTCAGTATCTTCATCCCGGCCTGATAGATCATCTCTaGTTCCTGCATCTGTCGTCTTTTGGCAGCATCTTCTTCAGCTTT +
Preference number: 5 (lower is better)
Translates to: IASIQYLHPGLIDHL*FLHLSSFGSIFFSF
Trigger: AAAGCTGAAGAAGATGCTGCCAAAAGACGACAGATGCAGGAAGCAGAGATGATCTATCAGGCCGGGATGAAGATACTGAATGGAAGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp GTTACTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTCGTAGGTCTTGCTGCTaGGATTCGGAGATTCTAAAA +
Preference number: 5 (lower is better)
Translates to: VTAFPKHPEDVLLGLFCFRRSCC*DSEILK
Trigger: TTTTAGAATCTCCGAATCCAAGCAGCAAGACCTACG...AAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAGTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp TATTTGCTTCGGTCCCACGTCCCACAGACTCTAGGTAAGAGAACAGAGCAAAGCTTTTGGCTCTTCCTATaGCTTCCATTCAGTATCTTC +
Preference number: 5 (lower is better)
Translates to: YLLRSHVPQTLGKRTEQSFWLFL*LPFSIF
Trigger: GAAGATACTGAATGGAAGCAATAGGAAGAGCCAAAA...GCTTTGCTCTGTTCTCTTACCTAGAGTCTGTGGGACGTGGGACCGAAGCAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp TTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATATGCAACTCACATGAGTTCTCAAACATCTCTTaGGCTGCCTGGATATTCTGT +
Preference number: 5 (lower is better)
Translates to: LDHPLASGLGLCICNSHEFSNIS*AAWIFC
Trigger: ACAGAATATCCAGGCAGCCAAAGAGATGTTTGAGAA...CTCATGTGAGTTGCATATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp TTTCCCCAGGTTGTCAATGCTCAGGACCTTAGAAGACAGGTAAGAAGTTATGCAGCCATAGCATGTGAATaGCCAGCATTTGCTGCTAAG +
Preference number: 5 (lower is better)
Translates to: FPQVVNAQDLRRQVRSYAAIACE*PAFAAK
Trigger: CTTAGCAGCAAATGCTGGCAATTCACATGCTATGGC...TGCATAACTTCTTACCTGTCTTCTAAGGTCCTGAGCATTGACAACCTGGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp ATGCTAAAACTCCCGAATCCTGGAGTTGGCTTAATGTCACTGACATCAACTAGCTGCATCTGTCGTCTTTaGGCAGCATCTTCTTCAGCT +
Preference number: 5 (lower is better)
Translates to: MLKLPNPGVGLMSLTSTSCICRL*AASSSA
Trigger: AGCTGAAGAAGATGCTGCCAAAAGACGACAGATGCA...GCTAGTTGATGTCAGTGACATTAAGCCAACTCCAGGATTCGGGAGTTTTAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp TTTCCCCAGGTTGTCAATGCTCAGGACCTTAGAAGACAGGTAAGAAGTTATGCATGCATCTGTCGTCTTTaGGCAGCATCTTCTTCAGCT +
Preference number: 5 (lower is better)
Translates to: FPQVVNAQDLRRQVRSYACICRL*AASSSA
Trigger: AGCTGAAGAAGATGCTGCCAAAAGACGACAGATGCA...TGCATAACTTCTTACCTGTCTTCTAAGGTCCTGAGCATTGACAACCTGGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp TTACACAGACCACAAATTCAGCTTGGGCTTTGGGGTGATTATGTGAAGCTCTCACGTAGGTCTTGCTGCTaGGATTCGGAGATTCTAAAA +
Preference number: 5 (lower is better)
Translates to: LHRPQIQLGLWGDYVKLSRRSCC*DSEILK
Trigger: TTTTAGAATCTCCGAATCCAAGCAGCAAGACCTACG...TGAGAGCTTCACATAATCACCCCAAAGCCCAAGCTGAATTTGTGGTCTGTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp CCAATAAATAGTAAACAAAGAACATCTGGATGGCTCCCTGCTCATAACCAAAGGTCTTGTAGTCATAGGTaGTGGCACACCACAGTCTGC +
Preference number: 5 (lower is better)
Translates to: PINSKQRTSGWLPAHNQRSCSHR*WHTTVC
Trigger: GCAGACTGTGGTGTGCCACAACCTATGACTACAAGA...CCTTTGGTTATGAGCAGGGAGCCATCCAGATGTTCTTTGTTTACTATTTATTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021347.12
CDS-3UTR CAA 90 bp CTGCATTTCCCAAACACCCTGAAGACGTCCTGCTTGGCTTGTTTTGCTTTTGACTTTTGGCTCTTCCTATaGCTTCCATTCAGTATCTTC +
Preference number: 5 (lower is better)
Translates to: LHFPNTLKTSCLACFAFDFWLFL*LPFSIF
Trigger: GAAGATACTGAATGGAAGCAATAGGAAGAGCCAAAA...GTCAAAAGCAAAACAAGCCAAGCAGGACGTCTTCAGGGTGTTTGGGAAATGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp TTAGATCATCCTCTGGCGTCTGGACTAGGGCTCTGTATATGCAACTCACATGAGCAAGATATGGCCTCCTaGAGAAGCCAGATTAAAATA +
Preference number: 5 (lower is better)
Translates to: LDHPLASGLGLCICNSHEQDMAS*RSQIKI
Trigger: TATTTTAATCTGGCTTCTCAAGGAGGCCATATCTTG...CTCATGTGAGTTGCATATACAGAGCCCTAGTCCAGACGCCAGAGGATGATCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp ACAGCTACTCAGTGGCTGACTTTCTACAGCCACATCAAACCGTCAGAAATAAAATTCTCAAACATCTCTTaGGCTGCCTGGATATTCTGT +
Preference number: 5 (lower is better)
Translates to: TATQWLTFYSHIKPSEIKFSNIS*AAWIFC
Trigger: ACAGAATATCCAGGCAGCCAAAGAGATGTTTGAGAA...TTTTATTTCTGACGGTTTGATGTGGCTGTAGAAAGTCAGCCACTGAGTAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp CATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTTAGTATTTTAGTAATATGGGCTATCAGGTaGCCTCCAAGAGCTCCGAAA +
Preference number: 5 (lower is better)
Translates to: HALGLTHPPLSEYFSILVIWAIR*PPRAPK
Trigger: TTTCGGAGCTCTTGGAGGCAACCTGATAGCCCATAT...TACTAAAATACTAAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp ATTTTCTTCAAGTACTTTCTGTGGGAAGTAAAGATGGAGGCAAAACTGCTGCCATTCTCAAACATCTCTTaGGCTGCCTGGATATTCTGT +
Preference number: 5 (lower is better)
Translates to: IFFKYFLWEVKMEAKLLPFSNIS*AAWIFC
Trigger: ACAGAATATCCAGGCAGCCAAAGAGATGTTTGAGAA...TGGCAGCAGTTTTGCCTCCATCTTTACTTCCCACAGAAAGTACTTGAAGAAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp ATTTTCTTCAAGTACTTTCTGTGGGAAGTAAAGATGGAGGCAAAACTGCTGCCATGTCATAAAAGCGTTTaGCAAGGTGAATGTCCTGTT +
Preference number: 5 (lower is better)
Translates to: IFFKYFLWEVKMEAKLLPCHKSV*QGECPV
Trigger: AACAGGACATTCACCTTGCAAAACGCTTTTATGACA...TGGCAGCAGTTTTGCCTCCATCTTTACTTCCCACAGAAAGTACTTGAAGAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp CATGCATTGGGTCTAACCCATCCTCCATTGTCTGAGTATTTTAGTATTTTAGTACAAGATATGGCCTCCTaGAGAAGCCAGATTAAAATA +
Preference number: 5 (lower is better)
Translates to: HALGLTHPPLSEYFSILVQDMAS*RSQIKI
Trigger: TATTTTAATCTGGCTTCTCAAGGAGGCCATATCTTG...TACTAAAATACTAAAATACTCAGACAATGGAGGATGGGTTAGACCCAATGCATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS-3UTR CAA 90 bp CCACAAGTGATAAAGTCGTTTCATTGCAGACAAGGATTACAGAAAACAATGGAATGTCATAAAAGCGTTTaGCAAGGTGAATGTCCTGTT +
Preference number: 5 (lower is better)
Translates to: PQVIKSFHCRQGLQKTMECHKSV*QGECPV
Trigger: AACAGGACATTCACCTTGCAAAACGCTTTTATGACA...TTCCATTGTTTTCTGTAATCCTTGTCTGCAATGAAACGACTTTATCACTTGTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp GGGAGGAGCCGGCCGTGGCCCTGGGGGCCTGGGAACTaGTATGTCCTGGTGCTGTCGCTGCCTGTAAGCTAT +
Preference number: 6 (lower is better)
Translates to: GRSRPWPWGPGN*YVLVLSLPVSY
Trigger: ATAGCTTACAGGCAGCGACAGCACCAGGACATACCAGTTCCCAGGCCCCCAGGGCCACGGCCGGCTCCTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp ATAGAGCCGAGCTGCAGCTGCCCGTCCACCCAGCCTTaGTCAGCAGCTTTCTGGAAATACTTGAGGGCCAGG +
Preference number: 6 (lower is better)
Translates to: IEPSCSCPSTQP*SAAFWKYLRAR
Trigger: CCTGGCCCTCAAGTATTTCCAGAAAGCTGCTGAGCAAGGCTGGGTGGACGGGCAGCTGCAGCTCGGCTCTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CAA 90 bp GTGGGCAAAGAACTCTTGGAATCTAAGGAGTCATCCTGGTTAGTTTaGTCATCCGAGGTCGCGGCTGCCGAGCCCAGGAGCACCGCGCAG +
Preference number: 6 (lower is better)
Translates to: VGKELLESKESSWLV*SSEVAAAEPRSTAQ
Trigger: CTGCGCGGTGCTCCTGGGCTCGGCAGCCGCGACCTCGGATGACAAAACTAACCAGGATGACTCCTTAGATTCCAAGAGTTCTTTGCCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS TCA 72 bp CGCTCACACACATTCTTAAACAACTCCACTGCAGTGTaGCAGGACCGCATCACCCCTGTGCCGCTGGCGTGC +
Preference number: 6 (lower is better)
Translates to: RSHTFLNNSTAV*QDRITPVPLAC
Trigger: GCACGCCAGCGGCACAGGGGTGATGCGGTCCTGTCACACTGCAGTGGAGTTGTTTAAGAATGTGTGTGAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp GGACCGCATCACCCCTGTGCCGCTGGCGTGCATCTGTaGGAGGTTATAGAAAGCCAAGATATGGCCTCCTTG +
Preference number: 6 (lower is better)
Translates to: GPHHPCAAGVHL*EVIESQDMASL
Trigger: CAAGGAGGCCATATCTTGGCTTTCTATAACCTCGCACAGATGCACGCCAGCGGCACAGGGGTGATGCGGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp ACTCCACTGCAGTGTGACAGGACCGCATCACCCCTGTaGCGCTGGCGTGCATCTGTGCGAGGTTATAGAAAG +
Preference number: 6 (lower is better)
Translates to: TPLQCDRTASPL*RWRASVRGYRK
Trigger: CTTTCTATAACCTCGCACAGATGCACGCCAGCGGCACAGGGGTGATGCGGTCCTGTCACACTGCAGTGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp TACAATGGTTGCTTCTCTCTGGTCGAGGATGAAGGCTaGGTTGCTCTGCGCCACCTCGTAGCCCTGCTCAGC +
Preference number: 6 (lower is better)
Translates to: YNGCFSLVEDEG*VALRHLVALLS
Trigger: GCTGAGCAGGGCTACGAGGTGGCGCAGAGCAACGCAGCCTTCATCCTCGACCAGAGAGAAGCAACCATTGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp GGAAGTGGCAGGGCTCCCCGTGCGCCGTACCTTCAATaGCAGTCAAGACTGGCTTCCGCACTCTCTTTAGTT +
Preference number: 6 (lower is better)
Translates to: GSGRAPRAPYLQ*QSRLASALSLV
Trigger: AACTAAAGAGAGTGCGGAAGCCAGTCTTGACTGCCATTGAAGGTACGGCGCACGGGGAGCCCTGCCACTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021347.12
CDS CCA 72 bp CTGCAGTGTGACAGGACCGCATCACCCCTGTGCCGCTaGCGTGCATCTGTGCGAGGTTATAGAAAGCCAAGA +
Preference number: 6 (lower is better)
Translates to: LQCDRTASPLCR*RASVRGYRKPR
Trigger: TCTTGGCTTTCTATAACCTCGCACAGATGCACGCCAGCGGCACAGGGGTGATGCGGTCCTGTCACACTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CAA 72 bp GCCCTTCTCGTGCATGTAGCCCAGGTTAAACATAGCTaGGGCGCTGTGCTGCTGCTCAGAAGCCAGGCGGTA +
Preference number: 6 (lower is better)
Translates to: ALLVHVAQVKHS*GAVLLLRSQAV
Trigger: TACCGCCTGGCTTCTGAGCAGCAGCACAGCGCCCAAGCTATGTTTAACCTGGGCTACATGCACGAGAAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS TCA 72 bp TCTCACCTACAATGGTTGCTTCTCTCTGGTCGAGGATaGAGGCTGCGTTGCTCTGCGCCACCTCGTAGCCCT +
Preference number: 6 (lower is better)
Translates to: SHLQWLLLSGRG*RLRCSAPPRSP
Trigger: AGGGCTACGAGGTGGCGCAGAGCAACGCAGCCTTCATCCTCGACCAGAGAGAAGCAACCATTGTAGGTGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp GCGACCTCGCTCACACACATTCTTAAACAACTCCACTaGAGTGTGACAGGACCGCATCACCCCTGTGCCGCT +
Preference number: 6 (lower is better)
Translates to: ATSLTHILKQLH*SVTGPHHPCAA
Trigger: AGCGGCACAGGGGTGATGCGGTCCTGTCACACTGCAGTGGAGTTGTTTAAGAATGTGTGTGAGCGAGGTCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CAA 72 bp GAACTCTTGGAATCTAAGGAGTCATCCTGGTTAGTTTaGTCATCCGAGGTCGCGGCTGCCGAGCCCAGGAGC +
Preference number: 6 (lower is better)
Translates to: ELLESKESSWLV*SSEVAAAEPRS
Trigger: GCTCCTGGGCTCGGCAGCCGCGACCTCGGATGACAAAACTAACCAGGATGACTCCTTAGATTCCAAGAGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp AGCAACATGATTGGCAACAAGACGATAATGGGTCAGTaGCGACTCACAACTCTGGAGGACTCCGATGCCAGC +
Preference number: 6 (lower is better)
Translates to: SNMIGNKTIMGQ*RLTTLEDSDAS
Trigger: GCTGGCATCGGAGTCCTCCAGAGTTGTGAGTCGGCACTGACCCATTATCGTCTTGTTGCCAATCATGTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp GTAGCCCTGCTCAGCCAGCAGGAGGTACTGGACCACTaGAGCATTGTAGTCCTCATCCTTATAGCTGTTGTA +
Preference number: 6 (lower is better)
Translates to: VALLSQQEVLDH*SIVVLILIAVV
Trigger: TACAACAGCTATAAGGATGAGGACTACAATGCTGCAGTGGTCCAGTACCTCCTGCTGGCTGAGCAGGGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp TCGCTGCCTGTAAGCTATGACTGTACCCAAGAGCAGTaGAATGATGGTCATGAGGTAAAGGTCCCACTCGGG +
Preference number: 6 (lower is better)
Translates to: SLPVSYDCTQEQ*NDGHEVKVPLG
Trigger: CCCGAGTGGGACCTTTACCTCATGACCATCATTGCACTGCTCTTGGGTACAGTCATAGCTTACAGGCAGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp GTGGGCAAAGAACTCTTGGAATCTAAGGAGTCATCCTaGTTAGTTTTGTCATCCGAGGTCGCGGCTGCCGAG +
Preference number: 6 (lower is better)
Translates to: VGKELLESKESS*LVLSSEVAAAE
Trigger: CTCGGCAGCCGCGACCTCGGATGACAAAACTAACCAGGATGACTCCTTAGATTCCAAGAGTTCTTTGCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp GGACACTCTCTCCAGGGCTTTGGTGTGATTCATGCCTaGTGCCTTCTGAAGGTACCGATATGCTTCTCTCTT +
Preference number: 6 (lower is better)
Translates to: GHSLQGFGVIHA*CLLKVPICFSL
Trigger: AAGAGAGAAGCATATCGGTACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAGCCCTGGAGAGAGTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp CATAGGACACTCTCTCCAGGGCTTTGGTGTGATTCATaGCTGCTGCCTTCTGAAGGTACCGATATGCTTCTC +
Preference number: 6 (lower is better)
Translates to: HRTLSPGLWCDS*LLPSEGTDMLL
Trigger: GAGAAGCATATCGGTACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAGCCCTGGAGAGAGTGTCCTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp TGCCCGTGGTGGTGTGGTCCTTCACTGACTCATCTGTaGGCAAAGAACTCTTGGAATCTAAGGAGTCATCCT +
Preference number: 6 (lower is better)
Translates to: CPWWCGPSLTHL*AKNSWNLRSHP
Trigger: AGGATGACTCCTTAGATTCCAAGAGTTCTTTGCCCACAGATGAGTCAGTGAAGGACCACACCACCACGGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp AATATCTGGCCAGCAACTACTTTGCCCGTGGTGGTGTaGTCCTTCACTGACTCATCTGTGGGCAAAGAACTC +
Preference number: 6 (lower is better)
Translates to: NIWPATTLPVVV*SFTDSSVGKEL
Trigger: GAGTTCTTTGCCCACAGATGAGTCAGTGAAGGACCACACCACCACGGGCAAAGTAGTTGCTGGCCAGATATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp CAACAAATATCTGGCCAGCAACTACTTTGCCCGTGGTaGTGTGGTCCTTCACTGACTCATCTGTGGGCAAAG +
Preference number: 6 (lower is better)
Translates to: QQISGQQLLCPW*CGPSLTHLWAK
Trigger: CTTTGCCCACAGATGAGTCAGTGAAGGACCACACCACCACGGGCAAAGTAGTTGCTGGCCAGATATTTGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp CAAACAAGAGAGCATAGGACACTCTCTCCAGGGCTTTaGTGTGATTCATGCCTGCTGCCTTCTGAAGGTACC +
Preference number: 6 (lower is better)
Translates to: QTREHRTLSPGL*CDSCLLPSEGT
Trigger: GGTACCTTCAGAAGGCAGCAGGCATGAATCACACCAAAGCCCTGGAGAGAGTGTCCTATGCTCTCTTGTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp AGCTCTGGGGTAAGTTTCATTCTCACCTACAATGGTTaGTTCTCTCTGGTCGAGGATGAAGGCTGCGTTGCT +
Preference number: 6 (lower is better)
Translates to: SSGVSFILTYNG*FSLVEDEGCVA
Trigger: AGCAACGCAGCCTTCATCCTCGACCAGAGAGAAGCAACCATTGTAGGTGAGAATGAAACTTACCCCAGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp AATCAACAAATATCTGGCCAGCAACTACTTTGCCCGTaGTGGTGTGGTCCTTCACTGACTCATCTGTGGGCA +
Preference number: 6 (lower is better)
Translates to: NQQISGQQLLCP*WCGPSLTHLWA
Trigger: TGCCCACAGATGAGTCAGTGAAGGACCACACCACCACGGGCAAAGTAGTTGCTGGCCAGATATTTGTTGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp CTTGGGAGGCGGCCCTGTTCCAATGCAGTAAAGCTCTaGGGTAAGTTTCATTCTCACCTACAATGGTTGCTT +
Preference number: 6 (lower is better)
Translates to: LGRRPCSNAVKL*GKFHSHLQWLL
Trigger: AAGCAACCATTGTAGGTGAGAATGAAACTTACCCCAGAGCTTTACTGCATTGGAACAGGGCCGCCTCCCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp TTTGCAGAGTGCGAGGAACACAGGTACTTGTGCATCTaGGCTAGCTTCGGCTGCCATGTCATAAAAGCGTTT +
Preference number: 6 (lower is better)
Translates to: FAECEEHRYLCI*ASFGCHVIKAF
Trigger: AAACGCTTTTATGACATGGCAGCCGAAGCTAGCCCAGATGCACAAGTACCTGTGTTCCTCGCACTCTGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CAA 90 bp GTGGTGGTGTGGTCCTTCACTGACTCATCTGTGGGCAAAGAACTCTaGGAATCTAAGGAGTCATCCTGGTTAGTTTTGTCATCCGAGGTC +
Preference number: 6 (lower is better)
Translates to: VVVWSFTDSSVGKEL*ESKESSWLVLSSEV
Trigger: GACCTCGGATGACAAAACTAACCAGGATGACTCCTTAGATTCCAAGAGTTCTTTGCCCACAGATGAGTCAGTGAAGGACCACACCACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS TCA 72 bp TCTTCCTCCTGGGTCTTGGAGCTATCTTCCTCGTCCTaGAGAAGGGATTCCACTTCTGCTTCTTCAGAATCA +
Preference number: 6 (lower is better)
Translates to: SSSWVLELSSSS*RRDSTSASSES
Trigger: TGATTCTGAAGAAGCAGAAGTGGAATCCCTTCTTCAGGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp GTGCTGCTGCTCAGAAGCCAGGCGGTAATGAATAAATaGGGTCTCATAATCCACATCAGTGCCAAAGCCATA +
Preference number: 6 (lower is better)
Translates to: VLLLRSQAVMNK*GLIIHISAKAI
Trigger: TATGGCTTTGGCACTGATGTGGATTATGAGACCGCATTTATTCATTACCGCCTGGCTTCTGAGCAGCAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp GAACACAGGTACTTGTGCATCTGGGCTAGCTTCGGCTaGCATGTCATAAAAGCGTTTTGCAAGGTGAATGTC +
Preference number: 6 (lower is better)
Translates to: EHRYLCIWASFG*HVIKAFCKVNV
Trigger: GACATTCACCTTGCAAAACGCTTTTATGACATGGCAGCCGAAGCTAGCCCAGATGCACAAGTACCTGTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp CAGAAGCGTAGAGAAAGCCAAGACCAGTCTGTCCTTTaGGAGACCCTTCCTCAGTCAGTTTCTCAAACATCT +
Preference number: 6 (lower is better)
Translates to: QKRRESQDQSVL*ETLPQSVSQTS
Trigger: AGATGTTTGAGAAACTGACTGAGGAAGGGTCTCCCAAAGGACAGACTGGTCTTGGCTTTCTCTACGCTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS TCA 72 bp AGGTCTTGCTGCTTGGATTCGGAGATTCTAAAAAGCTaGTCTCTTCCTCCTGGGTCTTGGAGCTATCTTCCT +
Preference number: 6 (lower is better)
Translates to: RSCCLDSEILKS*SLPPGSWSYLP
Trigger: AGGAAGATAGCTCCAAGACCCAGGAGGAAGAGATCAGCTTTTTAGAATCTCCGAATCCAAGCAGCAAGACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp ATTCAGTATCTTCATCCCGGCCTGATAGATCATCTCTaGTTCCTGCATCTGTCGTCTTTTGGCAGCATCTTC +
Preference number: 6 (lower is better)
Translates to: IQYLHPGLIDHL*FLHLSSFGSIF
Trigger: GAAGATGCTGCCAAAAGACGACAGATGCAGGAAGCAGAGATGATCTATCAGGCCGGGATGAAGATACTGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp GTTGCCCATGTCAGCAGCTTTCTTAAAGTAGTGAAGTaGCGTCTCATTACTCTGAGGTACGATGTCACTTCC +
Preference number: 6 (lower is better)
Translates to: VAHVSSFLKVVK*RLITLRYDVTS
Trigger: GGAAGTGACATCGTACCTCAGAGTAATGAGACGGCACTTCACTACTTTAAGAAAGCTGCTGACATGGGCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CCA 72 bp TCTGTCGTCTTTTGGCAGCATCTTCTTCAGCTTCAATaGCAGTCAAGACTGGCTTCCGCACTCTCTTTAGTT +
Preference number: 6 (lower is better)
Translates to: SVVFWQHLLQLQ*QSRLASALSLV
Trigger: AACTAAAGAGAGTGCGGAAGCCAGTCTTGACTGCCATTGAAGCTGAAGAAGATGCTGCCAAAAGACGACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167466.2
CDS TCA 72 bp ATCCTTATAGCTGTTGTAGGCAGTCATCAGTCTCTCTaGCCAGCGACCTCGCTCACACACATTCTTAAACAA +
Preference number: 6 (lower is better)
Translates to: ILIAVVGSHQSL*PATSLTHILKQ
Trigger: TTGTTTAAGAATGTGTGTGAGCGAGGTCGCTGGTCAGAGAGACTGATGACTGCCTACAACAGCTATAAGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS TCA 72 bp ACTCGGGTCCCAAAAGCTGGTCCATATCCAGTTGTGTaGATAGATCTCGAATGTTTGCTTCCCGTATGTACT +
Preference number: 6 (lower is better)
Translates to: TRVPKAGPYPVV*IDLECLLPVCT
Trigger: AGTACATACGGGAAGCAAACATTCGAGATCTATTCACACAACTGGATATGGACCAGCTTTTGGGACCCGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp GCTATCTTCCTCGTCCTGAAGAAGGGATTCCACTTCTaGTTCTTCAGAATCAACAAATATCTGGCCAGCAAC +
Preference number: 6 (lower is better)
Translates to: AIFLVLKKGFHF*FFRINKYLASN
Trigger: GTTGCTGGCCAGATATTTGTTGATTCTGAAGAAGCAGAAGTGGAATCCCTTCTTCAGGACGAGGAAGATAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp GGTACCGATATGCTTCTCTCTTTTGGCTCTTCCTATTaGTTCCATTCAGTATCTTCATCCCGGCCTGATAGA +
Preference number: 6 (lower is better)
Translates to: GTDMLLSFGSSY*FHSVSSSRPDR
Trigger: TCTATCAGGCCGGGATGAAGATACTGAATGGAAGCAATAGGAAGAGCCAAAAGAGAGAAGCATATCGGTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp CCCGTATGTACTGTAAGAAATAGACGACACCTAATTTaGAGAGTGCGAGGAACACAGGTACTTGTGCATCTG +
Preference number: 6 (lower is better)
Translates to: PVCTVRNRRHLI*RVRGTQVLVHL
Trigger: CAGATGCACAAGTACCTGTGTTCCTCGCACTCTGCAAATTAGGTGTCGTCTATTTCTTACAGTACATACGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS TCA 72 bp TCTCAAACATCTCTTTGGCTGCCTGGATATTCTGTGTaGGGTAATCACCAAACAAGAGAGCATAGGACACTC +
Preference number: 6 (lower is better)
Translates to: SQTSLWLPGYSV*GNHQTREHRTL
Trigger: GAGTGTCCTATGCTCTCTTGTTTGGTGATTACCTCACACAGAATATCCAGGCAGCCAAAGAGATGTTTGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS CAA 72 bp TGGTCCTTCACTGACTCATCTGTGGGCAAAGAACTCTaGGAATCTAAGGAGTCATCCTGGTTAGTTTTGTCA +
Preference number: 6 (lower is better)
Translates to: WSFTDSSVGKEL*ESKESSWLVLS
Trigger: TGACAAAACTAACCAGGATGACTCCTTAGATTCCAAGAGTTCTTTGCCCACAGATGAGTCAGTGAAGGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8
CDS GCA 72 bp AGTAGCGGTAACCCAAAATCATATGGGCTATCAGGTTaGCTCCAAGAGCTCCGAAAGTATAATATACAAGAG +
Preference number: 6 (lower is better)
Translates to: SSGNPKSYGLSG*LQELRKYNIQE
Trigger: CTCTTGTATATTATACTTTCGGAGCTCTTGGAGGCAACCTGATAGCCCATATGATTTTGGGTTACCGCTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021347.12
ENSMUST00000167466.2
ENSMUST00000178462.8