Pregenerated sensors for SECTM1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039364Ensembl transcript IDs: ENSMUST00000039309.12, ENSMUST00000081499.9, ENSMUST00000130786.2, ENSMUST00000168459.8, ENSMUST00000170381.8
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCTTCAGGGGGCTACCCCTGAGGTTCCAATCGCCCATAAGGCTGTaGGCCTCCTCATCCGGAGAAAGAGGGAGTCAGAGAGGGAGGAAG | + |
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Preference number: 1 (lower is better) Translates to: FFRGLPLRFQSPIRL*ASSSGERGSQRGRK Trigger: CTTCCTCCCTCTCTGACTCCCTCTTTCTCCGGATGAGGAGGCTCACAGCCTTATGGGCGATTGGAACCTCAGGGGTAGCCCCCTGAAGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 90 bp | GAAGGAAGGGGAGAGGAGAGGGAAAAGCTGCCTGAGACCCTGGCTTaGGCCTGTGTGAGGCACAGATGCTGCAGCACAAAGAGCTTACAC | + |
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Preference number: 1 (lower is better) Translates to: EGRGEEREKLPETLA*ACVRHRCCSTKSLH Trigger: GTGTAAGCTCTTTGTGCTGCAGCATCTGTGCCTCACACAGGCCCAAGCCAGGGTCTCAGGCAGCTTTTCCCTCTCCTCTCCCCTTCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 90 bp | CGGAGAAAGAGGGAGTCAGAGAGGGAGGAAGAAAGGAAAGGCATGTaGAAGGAAGGGGAGAGGAGAGGGAAAAGCTGCCTGAGACCCTGG | + |
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Preference number: 1 (lower is better) Translates to: RRKRESEREEERKGM*KEGERRGKSCLRPW Trigger: CCAGGGTCTCAGGCAGCTTTTCCCTCTCCTCTCCCCTTCCTTCCACATGCCTTTCCTTTCTTCCTCCCTCTCTGACTCCCTCTTTCTCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR TCA 90 bp | GTGAGTCAGAAGACACGATCTATGTGCCAGGAGCAAAGCTGGTACTaGATCTCCCACAAGCCCCTGCTGGCACCGGAGACCATAGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: VSQKTRSMCQEQSWY*ISHKPLLAPETIGK Trigger: CTTCCCTATGGTCTCCGGTGCCAGCAGGGGCTTGTGGGAGATTCAGTACCAGCTTTGCTCCTGGCACATAGATCGTGTCTTCTGACTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 90 bp | AACAAGGTTCTTCCTTGCTGTTGCCAGTGGGTGGTGATAGGTCCATaGATGCTTGTAGGGTTACAGGGACTCCAAGTCCATGGTGTTGGC | + |
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Preference number: 1 (lower is better) Translates to: NKVLPCCCQWVVIGP*MLVGLQGLQVHGVG Trigger: GCCAACACCATGGACTTGGAGTCCCTGTAACCCTACAAGCATCCATGGACCTATCACCACCCACTGGCAACAGCAAGGAAGAACCTTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR GCA 90 bp | CATAAGACCGTGGACCCTGACAGCAAGACCTGGGAAACTAACTATTaGTGTGAGTCAGAAGACACGATCTATGTGCCAGGAGCAAAGCTG | + |
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Preference number: 1 (lower is better) Translates to: HKTVDPDSKTWETNY*CESEDTIYVPGAKL Trigger: CAGCTTTGCTCCTGGCACATAGATCGTGTCTTCTGACTCACAGCAATAGTTAGTTTCCCAGGTCTTGCTGTCAGGGTCCACGGTCTTATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 90 bp | GACCTCTATTTCTCACATAAGACCGTGGACCCTGACAGCAAGACCTaGGAAACTAACTATTGCTGTGAGTCAGAAGACACGATCTATGTG | + |
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Preference number: 1 (lower is better) Translates to: DLYFSHKTVDPDSKT*ETNYCCESEDTIYV Trigger: CACATAGATCGTGTCTTCTGACTCACAGCAATAGTTAGTTTCCCAGGTCTTGCTGTCAGGGTCCACGGTCTTATGTGAGAAATAGAGGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR-3UTR CCA 90 bp | CCAGGAGCAAAGCTGGTACTGAATCTCCCACAAGCCCCTGCTGGCACCGGAGACCCCAGACGTGAGACATaGGCTACTGTGCCTAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: PGAKLVLNLPQAPAGTGDPRRET*ATVPSK Trigger: TTTGCTAGGCACAGTAGCCCATGTCTCACGTCTGGG...GTCTCCGGTGCCAGCAGGGGCTTGTGGGAGATTCAGTACCAGCTTTGCTCCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR-3UTR GCA 90 bp | GCCCGAGAGGAACAGCAGGTGAGGGCGGAGGTAAGTAGAGAGTCAGGGAGAGGGAAGACACGATCTATGTaGCAGGAGCAAAGCTGGTAC | + |
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Preference number: 2 (lower is better) Translates to: AREEQQVRAEVSRESGRGKTRSM*QEQSWY Trigger: GTACCAGCTTTGCTCCTGGCACATAGATCGTGTCTT...CCCTCTCCCTGACTCTCTACTTACCTCCGCCCTCACCTGCTGTTCCTCTCGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR-3UTR CCA 90 bp | AGGAGCAAAGCTGGTACTGAATCTCCCACAAGCCCCTGCTGGCACCGGAGACCATGGGACCTCCAAGAATaGGAGGTCATTCTTCAGGGG | + |
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Preference number: 2 (lower is better) Translates to: RSKAGTESPTSPCWHRRPWDLQE*EVILQG Trigger: CCCCTGAAGAATGACCTCCCATTCTTGGAGGTCCCA...TGGTCTCCGGTGCCAGCAGGGGCTTGTGGGAGATTCAGTACCAGCTTTGCTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR-3UTR TCA 90 bp | CCAGGAGCAAAGCTGGTACTGAATCTCCCACAAGCCCCTGCTGGCACCGGAGACTACTCTGAAATACTTTaGTGTCCCCCAAGCCCCAAC | + |
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Preference number: 2 (lower is better) Translates to: PGAKLVLNLPQAPAGTGDYSEIL*CPPSPN Trigger: GTTGGGGCTTGGGGGACATCAAAGTATTTCAGAGTA...GTCTCCGGTGCCAGCAGGGGCTTGTGGGAGATTCAGTACCAGCTTTGCTCCTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR-3UTR TCA 90 bp | AGGAGCAAAGCTGGTACTGAATCTCCCACAAGCCCCTGCTGGCACCGGAGACCACCCTTGAGTATCTTTTaGGGCAGGAATTGGGAGACT | + |
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Preference number: 2 (lower is better) Translates to: RSKAGTESPTSPCWHRRPPLSIF*GRNWET Trigger: AGTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGG...TGGTCTCCGGTGCCAGCAGGGGCTTGTGGGAGATTCAGTACCAGCTTTGCTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR-3UTR TCA 90 bp | GAGGTCATTCTTCAGGGGGCTACCCCTGAGGTTCCAATCGCCCATAAGGCTGTGGCTACTAAGGTCCCTTaGGTATCTTTTGAGGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: EVILQGATPEVPIAHKAVATKVP*VSFEAG Trigger: TCCTGCCTCAAAAGATACTCAAGGGACCTTAGTAGC...CACAGCCTTATGGGCGATTGGAACCTCAGGGGTAGCCCCCTGAAGAATGACCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR-3UTR TCA 90 bp | GGTGATGCATCATTTTGGACCTCTATTTCTCACATAAGACCGTGGACCCTGACATCGCCCATAAGGCTGTaGGCCTCCTCATCCGGAGAA | + |
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Preference number: 2 (lower is better) Translates to: GDASFWTSISHIRPWTLTSPIRL*ASSSGE Trigger: TTCTCCGGATGAGGAGGCTCACAGCCTTATGGGCGA...TGTCAGGGTCCACGGTCTTATGTGAGAAATAGAGGTCCAAAATGATGCATCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CAA 90 bp | GAGACATGGGCTACTGTGCCTAGCAAATACAAACAAGGTTCTTCCTaGCTGTTGCCAGTGGGTGGTGATAGGTCCATGGATGCTTGTAGG | + |
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Preference number: 2 (lower is better) Translates to: ETWATVPSKYKQGSS*LLPVGGDRSMDACR Trigger: CCTACAAGCATCCATGGACCTATCACCACCCACTGGCAACAGCAAGGAAGAACCTTGTTTGTATTTGCTAGGCACAGTAGCCCATGTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR-3UTR TCA 90 bp | GGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCTTGGATTGTCAGGTTCTCTGTAGCCTaGTGTTTGGAGCTACTAAGG | + |
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Preference number: 2 (lower is better) Translates to: GLGRQRVPVILSIRAWIVRFSVA*CLELLR Trigger: CCTTAGTAGCTCCAAACATCAGGCTACAGAGAACCT...GACAATCCAAGCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| 3UTR-3UTR TCA 90 bp | GATGCTGCAGCACAAAGAGCTTACACAAATAAGCAGGTACACCACGCACACTTGGTCCCAAGGTCAAAATaGGGGCTTGGGAGACAGAGA | + |
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Preference number: 2 (lower is better) Translates to: DAAAQRAYTNKQVHHAHLVPRSK*GLGRQR Trigger: TCTCTGTCTCCCAAGCCCTCATTTTGACCTTGGGAC...CAAGTGTGCGTGGTGTACCTGCTTATTTGTGTAAGCTCTTTGTGCTGCAGCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CAA 90 bp | TGGGCTACTGTGCCTAGCAAATACAAACAAGGTTCTTCCTTGCTGTaGCCAGTGGGTGGTGATAGGTCCATGGATGCTTGTAGGGTTACA | + |
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Preference number: 2 (lower is better) Translates to: WATVPSKYKQGSSLL*PVGGDRSMDACRVT Trigger: TGTAACCCTACAAGCATCCATGGACCTATCACCACCCACTGGCAACAGCAAGGAAGAACCTTGTTTGTATTTGCTAGGCACAGTAGCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR-3UTR TCA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCCCCTTGAGTATCTTTTaGGGCAGGAATTGGGAGACT | + |
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Preference number: 2 (lower is better) Translates to: VKMRAWETESSCDLVNQGPLSIF*GRNWET Trigger: AGTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGG...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| 3UTR-3UTR TCA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCGCTACTAAGGTCCCTTaGGTATCTTTTGAGGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: VKMRAWETESSCDLVNQGATKVP*VSFEAG Trigger: TCCTGCCTCAAAAGATACTCAAGGGACCTTAGTAGC...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| 3UTR-3UTR CAA 90 bp | GCCCGAGAGGAACAGCAGGTGAGGGCGGAGGTAAGTAGAGAGTCAGGGAGAGGGCCCTCAGTGAGCTCCTaGTCCCTGAGGTTTCCCCGC | + |
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Preference number: 3 (lower is better) Translates to: AREEQQVRAEVSRESGRGPSVSS*SLRFPR Trigger: GCGGGGAAACCTCAGGGACAAGGAGCTCACTGAGGG...CCCTCTCCCTGACTCTCTACTTACCTCCGCCCTCACCTGCTGTTCCTCTCGGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR TCA 72 bp | CACAAGCCCCTGCTGGCACCGGAGACCATAGGGAAGTaGAGTGAGTTTAGCAGGGAAGGACCTCAGGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: HKPLLAPETIGK*SEFSREGPQAS Trigger: GGAGGCCTGAGGTCCTTCCCTGCTAAACTCACTTCACTTCCCTATGGTCTCCGGTGCCAGCAGGGGCTTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR TCA 72 bp | GGGCTACCCCTGAGGTTCCAATCGCCCATAAGGCTGTaGGCCTCCTCATCCGGAGAAAGAGGGAGTCAGAGA | + |
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Preference number: 3 (lower is better) Translates to: GLPLRFQSPIRL*ASSSGERGSQR Trigger: TCTCTGACTCCCTCTTTCTCCGGATGAGGAGGCTCACAGCCTTATGGGCGATTGGAACCTCAGGGGTAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR TCA 72 bp | AAGACACGATCTATGTGCCAGGAGCAAAGCTGGTACTaGATCTCCCACAAGCCCCTGCTGGCACCGGAGACC | + |
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Preference number: 3 (lower is better) Translates to: KTRSMCQEQSWY*ISHKPLLAPET Trigger: GGTCTCCGGTGCCAGCAGGGGCTTGTGGGAGATTCAGTACCAGCTTTGCTCCTGGCACATAGATCGTGTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 72 bp | TACAGGGACTCCAAGTCCATGGTGTTGGCCTTGTTCTaGGACCTCCAAGAATGGGAGGTCATTCTTCAGGGG | + |
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Preference number: 3 (lower is better) Translates to: YRDSKSMVLALF*DLQEWEVILQG Trigger: CCCCTGAAGAATGACCTCCCATTCTTGGAGGTCCCAGAACAAGGCCAACACCATGGACTTGGAGTCCCTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 72 bp | CTTCCTTGCTGTTGCCAGTGGGTGGTGATAGGTCCATaGATGCTTGTAGGGTTACAGGGACTCCAAGTCCAT | + |
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Preference number: 3 (lower is better) Translates to: LPCCCQWVVIGP*MLVGLQGLQVH Trigger: ATGGACTTGGAGTCCCTGTAACCCTACAAGCATCCATGGACCTATCACCACCCACTGGCAACAGCAAGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR GCA 72 bp | CCGTGCTTCTCCCCAGACGTGAGACATGGGCTACTGTaGCTAGCAAATACAAACAAGGTTCTTCCTTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: PCFSPDVRHGLL*LANTNKVLPCC Trigger: ACAGCAAGGAAGAACCTTGTTTGTATTTGCTAGGCACAGTAGCCCATGTCTCACGTCTGGGGAGAAGCACGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 72 bp | CTGACGTCTACCTGTCCCAAGGTCAAAATGAGGGCTTaGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAG | + |
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Preference number: 3 (lower is better) Translates to: LTSTCPKVKMRA*ETESSCDLVNQ Trigger: CTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGACCTTGGGACAGGTAGACGTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| 3UTR-3UTR CAA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCTCCCTTGAGTATCTTTaGAGGCAGGAATTGGGAGAC | + |
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Preference number: 3 (lower is better) Translates to: VKMRAWETESSCDLVNQGSLEYL*RQELGD Trigger: GTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGGA...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| 3UTR GCA 72 bp | CTACTGTGCCTAGCAAATACAAACAAGGTTCTTCCTTaGTGTTGCCAGTGGGTGGTGATAGGTCCATGGATG | + |
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Preference number: 3 (lower is better) Translates to: LLCLANTNKVLP*CCQWVVIGPWM Trigger: CATCCATGGACCTATCACCACCCACTGGCAACAGCAAGGAAGAACCTTGTTTGTATTTGCTAGGCACAGTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 72 bp | AGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCTTaGATTGTCAGCCATAGCCAGGTGAGGTTCTCTGTA | + |
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Preference number: 3 (lower is better) Translates to: RQRVPVILSIRA*IVSHSQVRFSV Trigger: TACAGAGAACCTCACCTGGCTATGGCTGACAATCCAAGCCCTGATTGACAAGATCACAGGAACTCTCTGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| 3UTR CCA 72 bp | TTCTCACATAAGACCGTGGACCCTGACAGCAAGACCTaGGAAACTAACTATTGCTGTGAGTCAGAAGACACG | + |
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Preference number: 3 (lower is better) Translates to: FSHKTVDPDSKT*ETNYCCESEDT Trigger: CGTGTCTTCTGACTCACAGCAATAGTTAGTTTCCCAGGTCTTGCTGTCAGGGTCCACGGTCTTATGTGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR-3UTR CAA 90 bp | GGTGATGCATCATTTTGGACCTCTATTTCTCACATAAGACCGTGGACCCTGACATCCCTTGAGTATCTTTaGAGGCAGGAATTGGGAGAC | + |
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Preference number: 3 (lower is better) Translates to: GDASFWTSISHIRPWTLTSLEYL*RQELGD Trigger: GTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGGA...TGTCAGGGTCCACGGTCTTATGTGAGAAATAGAGGTCCAAAATGATGCATCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR TCA 72 bp | ATTGTCAGCCATAGCCAGGTGAGGTTCTCTGTAGCCTaGTGTTTGGAGCTACTAAGGTCCCTTGAGTATCTT | + |
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Preference number: 3 (lower is better) Translates to: IVSHSQVRFSVA*CLELLRSLEYL Trigger: AAGATACTCAAGGGACCTTAGTAGCTCCAAACATCAGGCTACAGAGAACCTCACCTGGCTATGGCTGACAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| 3UTR TCA 72 bp | ACAGGCCCACACCACCACCTAGTGGTAGGAATGTGGTaGTGCATCATTTTGGACCTCTATTTCTCACATAAG | + |
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Preference number: 3 (lower is better) Translates to: TGPHHHLVVGMW*CIILDLYFSHK Trigger: CTTATGTGAGAAATAGAGGTCCAAAATGATGCATCACCACATTCCTACCACTAGGTGGTGGTGTGGGCCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR GCA 72 bp | TGCCTAGCAAATACAAACAAGGTTCTTCCTTGCTGTTaGCAGTGGGTGGTGATAGGTCCATGGATGCTTGTA | + |
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Preference number: 3 (lower is better) Translates to: CLANTNKVLPCC*QWVVIGPWMLV Trigger: TACAAGCATCCATGGACCTATCACCACCCACTGGCAACAGCAAGGAAGAACCTTGTTTGTATTTGCTAGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 72 bp | GAGCTTACACAAATAAGCAGGTACACCACGCACACTTaGGATACTCTGAAATACTTTGATGTCCCCCAAGCC | + |
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Preference number: 3 (lower is better) Translates to: ELTQISRYTTHT*DTLKYFDVPQA Trigger: GGCTTGGGGGACATCAAAGTATTTCAGAGTATCCCAAGTGTGCGTGGTGTACCTGCTTATTTGTGTAAGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 72 bp | GCAAATACAAACAAGGTTCTTCCTTGCTGTTGCCAGTaGGTGGTGATAGGTCCATGGATGCTTGTAGGGTTA | + |
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Preference number: 3 (lower is better) Translates to: ANTNKVLPCCCQ*VVIGPWMLVGL Trigger: TAACCCTACAAGCATCCATGGACCTATCACCACCCACTGGCAACAGCAAGGAAGAACCTTGTTTGTATTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CCA 72 bp | GCATCATTTTGGACCTCTATTTCTCACATAAGACCGTaGACCCTGACAGCAAGACCTGGGAAACTAACTATT | + |
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Preference number: 3 (lower is better) Translates to: ASFWTSISHIRP*TLTARPGKLTI Trigger: AATAGTTAGTTTCCCAGGTCTTGCTGTCAGGGTCCACGGTCTTATGTGAGAAATAGAGGTCCAAAATGATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR TCA 90 bp | GAGGTCATTCTTCAGGGGGCTACCCCTGAGGTTCCAATCGCCCATAAGGCTGTGCCACCAGTACTCCCCTaGGTGTTTGCCCTGAGCATC | + |
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Preference number: 4 (lower is better) Translates to: EVILQGATPEVPIAHKAVPPVLP*VFALSI Trigger: GATGCTCAGGGCAAACACTCAGGGGAGTACTGGTGG...CACAGCCTTATGGGCGATTGGAACCTCAGGGGTAGCCCCCTGAAGAATGACCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR CCA 90 bp | CCAGGAGCAAAGCTGGTACTGAATCTCCCACAAGCCCCTGCTGGCACCGGAGACAGGGACCTTAGTGACTaGCAAGTCCTCTGTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: PGAKLVLNLPQAPAGTGDRDLSD*QVLCLL Trigger: CAGAAGACAGAGGACTTGCCAGTCACTAAGGTCCCT...GTCTCCGGTGCCAGCAGGGGCTTGTGGGAGATTCAGTACCAGCTTTGCTCCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR TCA 90 bp | GGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCTTGGATTGTCCCACCAGTACTCCCCTaGGTGTTTGCCCTGAGCATC | + |
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Preference number: 4 (lower is better) Translates to: GLGRQRVPVILSIRAWIVPPVLP*VFALSI Trigger: GATGCTCAGGGCAAACACTCAGGGGAGTACTGGTGG...GACAATCCAAGCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CCA 90 bp | GGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCTTGGATTGTCGGGCCCAGAGCATTCTaGGAAACAGGCCAGAGGATG | + |
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Preference number: 4 (lower is better) Translates to: GLGRQRVPVILSIRAWIVGPRAF*ETGQRM Trigger: CATCCTCTGGCCTGTTTCCCAGAATGCTCTGGGCCC...GACAATCCAAGCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| 3UTR CAA 72 bp | AGTAAGCAGGTATCGATCACAGGGGAAAGTGTGTTATaGAGAGCCAGAGAGGCCCGGATCATCAGGCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: SKQVSITGESVL*RAREARIIRPV Trigger: GACAGGCCTGATGATCCGGGCCTCTCTGGCTCTCAATAACACACTTTCCCCTGTGATCGATACCTGCTTACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| 3UTR CAA 72 bp | TCAGGGAGAGGGTCTACAAAGAGGTTCATGGGGAATTaGAAGGTCCAGCTATCCTCCCACAAAAGCGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: SGRGSTKRFMGN*KVQLSSHKSGA Trigger: GGCACCGCTTTTGTGGGAGGATAGCTGGACCTTCAAATTCCCCATGAACCTCTTTGTAGACCCTCTCCCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR CCA 90 bp | GGTGATGCATCATTTTGGACCTCTATTTCTCACATAAGACCGTGGACCCTGACAGGGCCCAGAGCATTCTaGGAAACAGGCCAGAGGATG | + |
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Preference number: 4 (lower is better) Translates to: GDASFWTSISHIRPWTLTGPRAF*ETGQRM Trigger: CATCCTCTGGCCTGTTTCCCAGAATGCTCTGGGCCC...TGTCAGGGTCCACGGTCTTATGTGAGAAATAGAGGTCCAAAATGATGCATCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR CCA 90 bp | TGTTTGGAGCTACTAAGGTCCCTTGAGTATCTTTTGAGGCAGGAATTGGGAGACGGGCCCAGAGCATTCTaGGAAACAGGCCAGAGGATG | + |
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Preference number: 4 (lower is better) Translates to: CLELLRSLEYLLRQELGDGPRAF*ETGQRM Trigger: CATCCTCTGGCCTGTTTCCCAGAATGCTCTGGGCCC...GTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGGACCTTAGTAGCTCCAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CCA 90 bp | GGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCTTGGATTGTCAGGGACCTTAGTGACTaGCAAGTCCTCTGTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: GLGRQRVPVILSIRAWIVRDLSD*QVLCLL Trigger: CAGAAGACAGAGGACTTGCCAGTCACTAAGGTCCCT...GACAATCCAAGCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR TCA 90 bp | GAGGTCATTCTTCAGGGGGCTACCCCTGAGGTTCCAATCGCCCATAAGGCTGTGAATATGAAGCTGCCATaGATCCTTAGAGTAGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: EVILQGATPEVPIAHKAVNMKLP*ILRVVS Trigger: GGAAACTACTCTAAGGATTCATGGCAGCTTCATATT...CACAGCCTTATGGGCGATTGGAACCTCAGGGGTAGCCCCCTGAAGAATGACCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR CCA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCAGGGACCTTAGTGACTaGCAAGTCCTCTGTCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: VKMRAWETESSCDLVNQGRDLSD*QVLCLL Trigger: CAGAAGACAGAGGACTTGCCAGTCACTAAGGTCCCT...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| 3UTR CAA 72 bp | GTGCCTAGCAAATACAAACAAGGTTCTTCCTTGCTGTaGCCAGTGGGTGGTGATAGGTCCATGGATGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: VPSKYKQGSSLL*PVGGDRSMDAC Trigger: ACAAGCATCCATGGACCTATCACCACCCACTGGCAACAGCAAGGAAGAACCTTGTTTGTATTTGCTAGGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR GCA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCGAAGTTTTTGAACTCTaGCTGGAATCCACGCAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: VKMRAWETESSCDLVNQGEVFEL*LESTQL Trigger: AAGCTGCGTGGATTCCAGGCAGAGTTCAAAAACTTC...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CCA 90 bp | CTAACTATTGCTGTGAGTCAGAAGACACGATCTATGTGCCAGGAGCAAAGCTGGTTTTTGAACTCTGCCTaGAATCCACGCAGCTTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: LTIAVSQKTRSMCQEQSWFLNSA*NPRSFH Trigger: GTGGAAGCTGCGTGGATTCCAGGCAGAGTTCAAAAA...CCAGCTTTGCTCCTGGCACATAGATCGTGTCTTCTGACTCACAGCAATAGTTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR GCA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCATACTTCATGCTCAGTaGAACAAGGTTTGTCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: VKMRAWETESSCDLVNQGILHAQ*NKVCPR Trigger: TCTGGGACAAACCTTGTTGCACTGAGCATGAAGTAT...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR GCA 90 bp | CTAACTATTGCTGTGAGTCAGAAGACACGATCTATGTGCCAGGAGCAAAGCTGGGAAGTTTTTGAACTCTaGCTGGAATCCACGCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LTIAVSQKTRSMCQEQSWEVFEL*LESTQL Trigger: AAGCTGCGTGGATTCCAGGCAGAGTTCAAAAACTTC...CCAGCTTTGCTCCTGGCACATAGATCGTGTCTTCTGACTCACAGCAATAGTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR GCA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCTGTCTTCTGTCTGTCTaGGGCATTAACAATCAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: VKMRAWETESSCDLVNQGCLLSV*GINNQV Trigger: AACCTGATTGTTAATGCCGCAGACAGACAGAAGACA...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CCA 90 bp | TGTTTGGAGCTACTAAGGTCCCTTGAGTATCTTTTGAGGCAGGAATTGGGAGACTTTTTGAACTCTGCCTaGAATCCACGCAGCTTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: CLELLRSLEYLLRQELGDFLNSA*NPRSFH Trigger: GTGGAAGCTGCGTGGATTCCAGGCAGAGTTCAAAAA...GTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGGACCTTAGTAGCTCCAAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR TCA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCAATATGAAGCTGCCATaGATCCTTAGAGTAGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: VKMRAWETESSCDLVNQGNMKLP*ILRVVS Trigger: GGAAACTACTCTAAGGATTCATGGCAGCTTCATATT...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR GCA 90 bp | TGTTTGGAGCTACTAAGGTCCCTTGAGTATCTTTTGAGGCAGGAATTGGGAGACGAAGTTTTTGAACTCTaGCTGGAATCCACGCAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: CLELLRSLEYLLRQELGDEVFEL*LESTQL Trigger: AAGCTGCGTGGATTCCAGGCAGAGTTCAAAAACTTC...GTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGGACCTTAGTAGCTCCAAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR GCA 90 bp | TGTTTGGAGCTACTAAGGTCCCTTGAGTATCTTTTGAGGCAGGAATTGGGAGACATACTTCATGCTCAGTaGAACAAGGTTTGTCCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: CLELLRSLEYLLRQELGDILHAQ*NKVCPR Trigger: TCTGGGACAAACCTTGTTGCACTGAGCATGAAGTAT...GTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGGACCTTAGTAGCTCCAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR GCA 90 bp | TGTTTGGAGCTACTAAGGTCCCTTGAGTATCTTTTGAGGCAGGAATTGGGAGACTGTCTTCTGTCTGTCTaGGGCATTAACAATCAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: CLELLRSLEYLLRQELGDCLLSV*GINNQV Trigger: AACCTGATTGTTAATGCCGCAGACAGACAGAAGACA...GTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGGACCTTAGTAGCTCCAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR TCA 90 bp | TGTTTGGAGCTACTAAGGTCCCTTGAGTATCTTTTGAGGCAGGAATTGGGAGACAATATGAAGCTGCCATaGATCCTTAGAGTAGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: CLELLRSLEYLLRQELGDNMKLP*ILRVVS Trigger: GGAAACTACTCTAAGGATTCATGGCAGCTTCATATT...GTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGGACCTTAGTAGCTCCAAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CAA 90 bp | CCAGGAGCAAAGCTGGTACTGAATCTCCCACAAGCCCCTGCTGGCACCGGAGACACGTCTCTGAGATTGTaGGAGATATTACAGGCCATC | + |
|
Preference number: 5 (lower is better) Translates to: PGAKLVLNLPQAPAGTGDTSLRL*EILQAI Trigger: GATGGCCTGTAATATCTCCAACAATCTCAGAGACGT...GTCTCCGGTGCCAGCAGGGGCTTGTGGGAGATTCAGTACCAGCTTTGCTCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR CAA 90 bp | CCAGGAGCAAAGCTGGTACTGAATCTCCCACAAGCCCCTGCTGGCACCGGAGACGTTTCCTGGAGGCGTTaGATTGAAGATGATGCTAGT | + |
|
Preference number: 5 (lower is better) Translates to: PGAKLVLNLPQAPAGTGDVSWRR*IEDDAS Trigger: ACTAGCATCATCTTCAATCAAACGCCTCCAGGAAAC...GTCTCCGGTGCCAGCAGGGGCTTGTGGGAGATTCAGTACCAGCTTTGCTCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS CCA 90 bp | TTCTGTCCGCACTGCAGTTGGGGGCTTATCAGGGACCTTAGTGACTaGCAAGTCCTCTGTCTTCTGTCTGTCTGCGGCATTAACAATCAG | + |
|
Preference number: 5 (lower is better) Translates to: FCPHCSWGLIRDLSD*QVLCLLSVCGINNQ Trigger: CTGATTGTTAATGCCGCAGACAGACAGAAGACAGAGGACTTGCCAGTCACTAAGGTCCCTGATAAGCCCCCAACTGCAGTGCGGACAGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS CCA 90 bp | GGTAGCAATGGCGATGATGATGATAACTTCTGTCCGCACTGCAGTTaGGGGCTTATCAGGGACCTTAGTGACTGGCAAGTCCTCTGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: GSNGDDDDNFCPHCS*GLIRDLSDWQVLCL Trigger: AAGACAGAGGACTTGCCAGTCACTAAGGTCCCTGATAAGCCCCCAACTGCAGTGCGGACAGAAGTTATCATCATCATCGCCATTGCTACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CAA 90 bp | GGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCTTGGATTGTCGTGACGTCTCTGAGATaGTTGGAGATATTACAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: GLGRQRVPVILSIRAWIVVTSLR*LEILQA Trigger: GGCCTGTAATATCTCCAACAATCTCAGAGACGTCAC...GACAATCCAAGCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CAA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCGTGACGTCTCTGAGATaGTTGGAGATATTACAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: VKMRAWETESSCDLVNQGVTSLR*LEILQA Trigger: GGCCTGTAATATCTCCAACAATCTCAGAGACGTCAC...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS TCA 90 bp | TGTGATCACCAGCTGGGCCTGGCCTCCTTGAATATGAAGCTGCCATaGATCCTTAGAGTAGTTTCCTGGAGGCGTTTGATTGAAGATGAT | + |
|
Preference number: 5 (lower is better) Translates to: CDHQLGLASLNMKLP*ILRVVSWRRLIEDD Trigger: ATCATCTTCAATCAAACGCCTCCAGGAAACTACTCTAAGGATTCATGGCAGCTTCATATTCAAGGAGGCCAGGCCCAGCTGGTGATCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CAA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCACGTCTCTGAGATTGTaGGAGATATTACAGGCCATC | + |
|
Preference number: 5 (lower is better) Translates to: VKMRAWETESSCDLVNQGTSLRL*EILQAI Trigger: GATGGCCTGTAATATCTCCAACAATCTCAGAGACGT...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CAA 90 bp | CTAACTATTGCTGTGAGTCAGAAGACACGATCTATGTGCCAGGAGCAAAGCTGGGTGACGTCTCTGAGATaGTTGGAGATATTACAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LTIAVSQKTRSMCQEQSWVTSLR*LEILQA Trigger: GGCCTGTAATATCTCCAACAATCTCAGAGACGTCAC...CCAGCTTTGCTCCTGGCACATAGATCGTGTCTTCTGACTCACAGCAATAGTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039309.12 |
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| CDS-3UTR CAA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCGTTTCCTGGAGGCGTTaGATTGAAGATGATGCTAGT | + |
|
Preference number: 5 (lower is better) Translates to: VKMRAWETESSCDLVNQGVSWRR*IEDDAS Trigger: ACTAGCATCATCTTCAATCAAACGCCTCCAGGAAAC...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CAA 90 bp | GGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCTTGGATTGTCGCATTAACAATCAGGTaGAAGTTTTTGAACTCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: GLGRQRVPVILSIRAWIVALTIR*KFLNSA Trigger: GGCAGAGTTCAAAAACTTCAACCTGATTGTTAATGC...GACAATCCAAGCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CAA 90 bp | GTCAAAATGAGGGCTTGGGAGACAGAGAGTTCCTGTGATCTTGTCAATCAGGGCGCATTAACAATCAGGTaGAAGTTTTTGAACTCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: VKMRAWETESSCDLVNQGALTIR*KFLNSA Trigger: GGCAGAGTTCAAAAACTTCAACCTGATTGTTAATGC...GCCCTGATTGACAAGATCACAGGAACTCTCTGTCTCCCAAGCCCTCATTTTGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS GCA 90 bp | ATCAGACAAGGTACTGACATTTGTATCTGTGGAGCTACAGGGAATTaGTTGTACCAAACGAATACACCGATTCCTGTGATGATGATGGTG | + |
|
Preference number: 5 (lower is better) Translates to: IRQGTDICICGATGN*LYQTNTPIPVMMMV Trigger: CACCATCATCATCACAGGAATCGGTGTATTCGTTTGGTACAAGCAATTCCCTGTAGCTCCACAGATACAAATGTCAGTACCTTGTCTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS-3UTR CAA 90 bp | TGTTTGGAGCTACTAAGGTCCCTTGAGTATCTTTTGAGGCAGGAATTGGGAGACGCATTAACAATCAGGTaGAAGTTTTTGAACTCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: CLELLRSLEYLLRQELGDALTIR*KFLNSA Trigger: GGCAGAGTTCAAAAACTTCAACCTGATTGTTAATGC...GTCTCCCAATTCCTGCCTCAAAAGATACTCAAGGGACCTTAGTAGCTCCAAACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS TCA 72 bp | TGCCTGGAATCCACGCAGCTTCCACCAGTACTCCCCTaGGTGTTTGCCCTGAGCATCTGTGATCACCAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: CLESTQLPPVLP*VFALSICDHQL Trigger: CAGCTGGTGATCACAGATGCTCAGGGCAAACACTCAGGGGAGTACTGGTGGAAGCTGCGTGGATTCCAGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS CCA 72 bp | CACTGCAGTTGGGGGCTTATCAGGGACCTTAGTGACTaGCAAGTCCTCTGTCTTCTGTCTGTCTGCGGCATT | + |
|
Preference number: 6 (lower is better) Translates to: HCSWGLIRDLSD*QVLCLLSVCGI Trigger: AATGCCGCAGACAGACAGAAGACAGAGGACTTGCCAGTCACTAAGGTCCCTGATAAGCCCCCAACTGCAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS CCA 72 bp | GGCGATGATGATGATAACTTCTGTCCGCACTGCAGTTaGGGGCTTATCAGGGACCTTAGTGACTGGCAAGTC | + |
|
Preference number: 6 (lower is better) Translates to: GDDDDNFCPHCS*GLIRDLSDWQV Trigger: GACTTGCCAGTCACTAAGGTCCCTGATAAGCCCCCAACTGCAGTGCGGACAGAAGTTATCATCATCATCGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS CAA 72 bp | CTGGTAACCAACTCAATGGTGACGTCTCTGAGATTGTaGGAGATATTACAGGCCATCACCACGCGGCTGCCT | + |
|
Preference number: 6 (lower is better) Translates to: LVTNSMVTSLRL*EILQAITTRLP Trigger: AGGCAGCCGCGTGGTGATGGCCTGTAATATCTCCAACAATCTCAGAGACGTCACCATTGAGTTGGTTACCAG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS TCA 72 bp | CAGCTGGGCCTGGCCTCCTTGAATATGAAGCTGCCATaGATCCTTAGAGTAGTTTCCTGGAGGCGTTTGATT | + |
|
Preference number: 6 (lower is better) Translates to: QLGLASLNMKLP*ILRVVSWRRLI Trigger: AATCAAACGCCTCCAGGAAACTACTCTAAGGATTCATGGCAGCTTCATATTCAAGGAGGCCAGGCCCAGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS GCA 72 bp | TGCGGCATTAACAATCAGGTTGAAGTTTTTGAACTCTaGCTGGAATCCACGCAGCTTCCACCAGTACTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: CGINNQVEVFEL*LESTQLPPVLP Trigger: GGGGAGTACTGGTGGAAGCTGCGTGGATTCCAGGCAGAGTTCAAAAACTTCAACCTGATTGTTAATGCCGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS GCA 72 bp | GATTGTTGGAGATATTACAGGCCATCACCACGCGGCTaGCTCTGTTTACAGATACTTCATGCTCAGTGCAAC | + |
|
Preference number: 6 (lower is better) Translates to: DCWRYYRPSPRG*LCLQILHAQCN Trigger: GTTGCACTGAGCATGAAGTATCTGTAAACAGAGGCAGCCGCGTGGTGATGGCCTGTAATATCTCCAACAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS CCA 72 bp | GCATTAACAATCAGGTTGAAGTTTTTGAACTCTGCCTaGAATCCACGCAGCTTCCACCAGTACTCCCCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: ALTIRLKFLNSA*NPRSFHQYSPE Trigger: CTCAGGGGAGTACTGGTGGAAGCTGCGTGGATTCCAGGCAGAGTTCAAAAACTTCAACCTGATTGTTAATGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS GCA 72 bp | CTTAGTGACTGGCAAGTCCTCTGTCTTCTGTCTGTCTaGGGCATTAACAATCAGGTTGAAGTTTTTGAACTC | + |
|
Preference number: 6 (lower is better) Translates to: LSDWQVLCLLSV*GINNQVEVFEL Trigger: GAGTTCAAAAACTTCAACCTGATTGTTAATGCCGCAGACAGACAGAAGACAGAGGACTTGCCAGTCACTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000130786.2 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS GCA 72 bp | GGTACTGACATTTGTATCTGTGGAGCTACAGGGAATTaGTTGTACCAAACGAATACACCGATTCCTGTGATG | + |
|
Preference number: 6 (lower is better) Translates to: GTDICICGATGN*LYQTNTPIPVM Trigger: CATCACAGGAATCGGTGTATTCGTTTGGTACAAGCAATTCCCTGTAGCTCCACAGATACAAATGTCAGTACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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| CDS CAA 90 bp | AGACAAGGTACTGACATTTGTATCTGTGGAGCTACAGGGAATTGCTaGTACCAAACGAATACACCGATTCCTGTGATGATGATGGTGGTA | + |
|
Preference number: 6 (lower is better) Translates to: RQGTDICICGATGNC*YQTNTPIPVMMMVV Trigger: TACCACCATCATCATCACAGGAATCGGTGTATTCGTTTGGTACAAGCAATTCCCTGTAGCTCCACAGATACAAATGTCAGTACCTTGTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000039309.12 ENSMUST00000081499.9 ENSMUST00000168459.8 ENSMUST00000170381.8 |
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