Pregenerated sensors for SEC62 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027706Ensembl transcript IDs: ENSMUST00000029256.9
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAGAGCCTCGCCGTCCAGTCAGCGCTCCTCACTTCTGCTGGAGATaGCCGCCTTTCTCTGGATTGAACGCACAGGTCAGTTGGGATTTC | + |
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Preference number: 1 (lower is better) Translates to: EEPRRPVSAPHFCWR*PPFSGLNAQVSWDF Trigger: GAAATCCCAACTGACCTGTGCGTTCAATCCAGAGAAAGGCGGTCATCTCCAGCAGAAGTGAGGAGCGCTGACTGGACGGCGAGGCTCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR CCA 90 bp | TCCAGTCAGCGCTCCTCACTTCTGCTGGAGATGACCGCCTTTCTCTaGATTGAACGCACAGGTCAGTTGGGATTTCCTAAGCTGGAAAAG | + |
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Preference number: 1 (lower is better) Translates to: SSQRSSLLLEMTAFL*IERTGQLGFPKLEK Trigger: CTTTTCCAGCTTAGGAAATCCCAACTGACCTGTGCGTTCAATCCAGAGAAAGGCGGTCATCTCCAGCAGAAGTGAGGAGCGCTGACTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR TCA 90 bp | TGTGAAGGAAGAACACCGAGGCACTGTAATCAATGCACAGCGCTCTaGGGACCGCACCTACCGTTCCATCCACACAGGAAGACTAAAGAA | + |
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Preference number: 1 (lower is better) Translates to: CEGRTPRHCNQCTAL*GPHLPFHPHRKTKE Trigger: TTCTTTAGTCTTCCTGTGTGGATGGAACGGTAGGTGCGGTCCTCAGAGCGCTGTGCATTGATTACAGTGCCTCGGTGTTCTTCCTTCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR TCA 90 bp | CAGGTCAGTTGGGATTTCCTAAGCTGGAAAAGGAGAATCTGTAGCTaGATTAAAAGGGTTGCTGCACTGTTACTAGCTGGCTTGTTTCCA | + |
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Preference number: 1 (lower is better) Translates to: QVSWDFLSWKRRICS*IKRVAALLLAGLFP Trigger: TGGAAACAAGCCAGCTAGTAACAGTGCAGCAACCCTTTTAATTCAGCTACAGATTCTCCTTTTCCAGCTTAGGAAATCCCAACTGACCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR TCA 90 bp | ACAGACAATGGACAAACACAAGAAGAGAAACAGCCTAAAGGAGGATaGAGACCTATATATCCATCACCTACTAACTACAAAGCAAAACCA | + |
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Preference number: 1 (lower is better) Translates to: TDNGQTQEEKQPKGG*RPIYPSPTNYKAKP Trigger: TGGTTTTGCTTTGTAGTTAGTAGGTGATGGATATATAGGTCTTCATCCTCCTTTAGGCTGTTTCTCTTCTTGTGTTTGTCCATTGTCTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR GCA 90 bp | AATGTCAAATACATTTCAGAAAATGGATTTAAAGAATGCTACAAATaGCATCTGTACATCATGATGATCGGCCAACACAGAAAACCCAAC | + |
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Preference number: 1 (lower is better) Translates to: NVKYISENGFKECYK*HLYIMMIGQHRKPN Trigger: GTTGGGTTTTCTGTGTTGGCCGATCATCATGATGTACAGATGGCATTTGTAGCATTCTTTAAATCCATTTTCTGAAATGTATTTGACATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR-3UTR GCA 90 bp | TCCATCTGGACTCAGTTCCTGCTTAGTTCAATCCTGCATAGGCCAACATACATACGTGGCTCCAAGGATTaGTTGTGTATATGCAGGCGT | + |
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Preference number: 2 (lower is better) Translates to: SIWTQFLLSSILHRPTYIRGSKD*LCICRR Trigger: ACGCCTGCATATACACAAGCAATCCTTGGAGCCACG...TATGTATGTTGGCCTATGCAGGATTGAACTAAGCAGGAACTGAGTCCAGATGGA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR-3UTR CCA 90 bp | GCCTTTCTCTGGATTGAACGCACAGGTCAGTTGGGATTTCCTAAGCTGGAAAAGTGCACTGTTACTAGCTaGCTTGTTTCCACAAAATGC | + |
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Preference number: 2 (lower is better) Translates to: AFLWIERTGQLGFPKLEKCTVTS*LVSTKC Trigger: GCATTTTGTGGAAACAAGCCAGCTAGTAACAGTGCA...CTTTTCCAGCTTAGGAAATCCCAACTGACCTGTGCGTTCAATCCAGAGAAAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR-3UTR TCA 90 bp | CCTGTGACTAACAAGCTCATAAGCTGTAATTATCCTCTTCCTTACTGTGGACACCAGCCTAAAGGAGGATaGAGACCTATATATCCATCA | + |
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Preference number: 2 (lower is better) Translates to: PVTNKLISCNYPLPYCGHQPKGG*RPIYPS Trigger: TGATGGATATATAGGTCTTCATCCTCCTTTAGGCTG...GTGTCCACAGTAAGGAAGAGGATAATTACAGCTTATGAGCTTGTTAGTCACAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR-3UTR TCA 90 bp | CCTGTGACTAACAAGCTCATAAGCTGTAATTATCCTCTTCCTTACTGTGGACACAAGGCTGACTGTAACTaGATGTCAAATACATTTCAG | + |
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Preference number: 2 (lower is better) Translates to: PVTNKLISCNYPLPYCGHKADCN*MSNTFQ Trigger: CTGAAATGTATTTGACATTCAGTTACAGTCAGCCTT...GTGTCCACAGTAAGGAAGAGGATAATTACAGCTTATGAGCTTGTTAGTCACAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR-3UTR CCA 90 bp | AACAGCCTAAAGGAGGATGAAGACCTATATATCCATCACCTACTAACTACAAAGTGGGATTTCCTAAGCTaGAAAAGGAGAATCTGTAGC | + |
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Preference number: 2 (lower is better) Translates to: NSLKEDEDLYIHHLLTTKWDFLS*KRRICS Trigger: GCTACAGATTCTCCTTTTCCAGCTTAGGAAATCCCA...CTTTGTAGTTAGTAGGTGATGGATATATAGGTCTTCATCCTCCTTTAGGCTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR-3UTR TCA 90 bp | ATCCATCACCTACTAACTACAAAGCAAAACCACCGTGTGACTAAAGGAAAATCATCCACAAAATGCTCTTaGTCCCTGCTAACTCAAAAA | + |
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Preference number: 2 (lower is better) Translates to: IHHLLTTKQNHRVTKGKSSTKCS*SLLTQK Trigger: TTTTTGAGTTAGCAGGGATCAAGAGCATTTTGTGGA...TGATTTTCCTTTAGTCACACGGTGGTTTTGCTTTGTAGTTAGTAGGTGATGGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR TCA 72 bp | CGCCGTCCAGTCAGCGCTCCTCACTTCTGCTGGAGATaGCCGCCTTTCTCTGGATTGAACGCACAGGTCAGT | + |
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Preference number: 3 (lower is better) Translates to: RRPVSAPHFCWR*PPFSGLNAQVS Trigger: ACTGACCTGTGCGTTCAATCCAGAGAAAGGCGGTCATCTCCAGCAGAAGTGAGGAGCGCTGACTGGACGGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR CCA 72 bp | CGCTCCTCACTTCTGCTGGAGATGACCGCCTTTCTCTaGATTGAACGCACAGGTCAGTTGGGATTTCCTAAG | + |
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Preference number: 3 (lower is better) Translates to: RSSLLLEMTAFL*IERTGQLGFPK Trigger: CTTAGGAAATCCCAACTGACCTGTGCGTTCAATCCAGAGAAAGGCGGTCATCTCCAGCAGAAGTGAGGAGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR CCA 72 bp | CACCGTGTGACTAAAGGAAAATCACTCACTGCTCACTaGGGTGTAAAACGTGGCTCCAAGGATTGCTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: HRVTKGKSLTAH*GVKRGSKDCLC Trigger: ACACAAGCAATCCTTGGAGCCACGTTTTACACCCCAGTGAGCAGTGAGTGATTTTCCTTTAGTCACACGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR-3UTR CAA 90 bp | ATCCATCACCTACTAACTACAAAGCAAAACCACCGTGTGACTAAAGGAAAATCACCGCCTTTCTCTGGATaGAACGCACAGGTCAGTTGG | + |
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Preference number: 3 (lower is better) Translates to: IHHLLTTKQNHRVTKGKSPPFSG*NAQVSW Trigger: CCAACTGACCTGTGCGTTCAATCCAGAGAAAGGCGG...TGATTTTCCTTTAGTCACACGGTGGTTTTGCTTTGTAGTTAGTAGGTGATGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR-3UTR CAA 90 bp | AACAGCCTAAAGGAGGATGAAGACCTATATATCCATCACCTACTAACTACAAAGACGTGGCTCCAAGGATaGCTTGTGTATATGCAGGCG | + |
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Preference number: 3 (lower is better) Translates to: NSLKEDEDLYIHHLLTTKTWLQG*LVYMQA Trigger: CGCCTGCATATACACAAGCAATCCTTGGAGCCACGT...CTTTGTAGTTAGTAGGTGATGGATATATAGGTCTTCATCCTCCTTTAGGCTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR TCA 72 bp | TGGGATTTCCTAAGCTGGAAAAGGAGAATCTGTAGCTaGATTAAAAGGGTTGCTGCACTGTTACTAGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: WDFLSWKRRICS*IKRVAALLLAG Trigger: GCCAGCTAGTAACAGTGCAGCAACCCTTTTAATTCAGCTACAGATTCTCCTTTTCCAGCTTAGGAAATCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR-3UTR CAA 90 bp | CCTGTGACTAACAAGCTCATAAGCTGTAATTATCCTCTTCCTTACTGTGGACACCTGTTACTAGCTGGCTaGTTTCCACAAAATGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: PVTNKLISCNYPLPYCGHLLLAG*FPQNAL Trigger: AAGAGCATTTTGTGGAAACAAGCCAGCTAGTAACAG...GTGTCCACAGTAAGGAAGAGGATAATTACAGCTTATGAGCTTGTTAGTCACAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR GCA 72 bp | CACATATGTACTATTCTTCCATCTGGACTCAGTTCCTaGTTAGTTCAATCCTGCATAGGCCAACATACATAC | + |
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Preference number: 3 (lower is better) Translates to: HICTILPSGLSS*LVQSCIGQHTY Trigger: GTATGTATGTTGGCCTATGCAGGATTGAACTAAGCAGGAACTGAGTCCAGATGGAAGAATAGTACATATGTG 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR TCA 72 bp | GGACAAACACAAGAAGAGAAACAGCCTAAAGGAGGATaGAGACCTATATATCCATCACCTACTAACTACAAA | + |
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Preference number: 3 (lower is better) Translates to: GQTQEEKQPKGG*RPIYPSPTNYK Trigger: TTTGTAGTTAGTAGGTGATGGATATATAGGTCTTCATCCTCCTTTAGGCTGTTTCTCTTCTTGTGTTTGTCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR-3UTR CAA 90 bp | ATTCACATATGTACTATTCTTCCATCTGGACTCAGTTCCTGCTTAGTTCAATCCAATGGCCAAACTAGTTaGAAGCAATTAGAGTCCAAT | + |
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Preference number: 3 (lower is better) Translates to: IHICTILPSGLSSCLVQSNGQTS*KQLESN Trigger: ATTGGACTCTAATTGCTTCAAACTAGTTTGGCCATT...GGATTGAACTAAGCAGGAACTGAGTCCAGATGGAAGAATAGTACATATGTGAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| 3UTR TCA 72 bp | ACAAGAGTACTCTCCCCAAAGATCAGCAAATACTTATaGAAAATTTACTATCCACTTGTATCAGTAAGTGGA | + |
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Preference number: 3 (lower is better) Translates to: TRVLSPKISKYL*KIYYPLVSVSG Trigger: TCCACTTACTGATACAAGTGGATAGTAAATTTTTCATAAGTATTTGCTGATCTTTGGGGAGAGTACTCTTGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR GCA 90 bp | AGCCTCGCCGTCCAGTCAGCGCTCCTCACTTCTGCTGGAGATGACCGCCTTTCTGGCTACAAAACAGCCTaGGCCCACACTGAGGTAATA | + |
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Preference number: 4 (lower is better) Translates to: SLAVQSALLTSAGDDRLSGYKTA*AHTEVI Trigger: TATTACCTCAGTGTGGGCGCAGGCTGTTTTGTAGCC...AGAAAGGCGGTCATCTCCAGCAGAAGTGAGGAGCGCTGACTGGACGGCGAGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | AGCCTCGCCGTCCAGTCAGCGCTCCTCACTTCTGCTGGAGATGACCGCCTTTCTTACTCTCATTTCTGCTaGCCAGAGAGGGAAGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: SLAVQSALLTSAGDDRLSYSHFC*PEREEG Trigger: ACCCTCTTCCCTCTCTGGCCAGCAGAAATGAGAGTA...AGAAAGGCGGTCATCTCCAGCAGAAGTGAGGAGCGCTGACTGGACGGCGAGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR TCA 90 bp | TCCATCTGGACTCAGTTCCTGCTTAGTTCAATCCTGCATAGGCCAACATACATAGTCACTGTCCGTGTCTaGGTGCCGCTCTCCGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: SIWTQFLLSSILHRPTYIVTVRV*VPLSAR Trigger: TCGGGCGGAGAGCGGCACTCAGACACGGACAGTGAC...TATGTATGTTGGCCTATGCAGGATTGAACTAAGCAGGAACTGAGTCCAGATGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | TCCATCTGGACTCAGTTCCTGCTTAGTTCAATCCTGCATAGGCCAACATACATAGAGCCTTCTGGTCCATaGTCTGCCGGAGCTCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: SIWTQFLLSSILHRPTYIEPSGP*SAGAPF Trigger: GAAAGGAGCTCCGGCAGACCATGGACCAGAAGGCTC...TATGTATGTTGGCCTATGCAGGATTGAACTAAGCAGGAACTGAGTCCAGATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR GCA 90 bp | GTACCTCTGATGACTATCAAAATGAGGCCTACTTACTGTAAAATTATCAGATGGCTGTCCGTGTCTGAGTaGCGCTCTCCGCCCGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: VPLMTIKMRPTYCKIIRWLSVSE*RSPPEP Trigger: AGGCTCGGGCGGAGAGCGGCACTCAGACACGGACAG...CCATCTGATAATTTTACAGTAAGTAGGCCTCATTTTGATAGTCATCAGAGGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR GCA 90 bp | TGCTACAAATGCCATCTGTACATCATGATGATCGGCCAACACAGAAAACCCAACACCTACTCTCATTTCTaGTGGCCAGAGAGGGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: CYKCHLYIMMIGQHRKPNTYSHF*WPEREE Trigger: CTCTTCCCTCTCTGGCCAGCAGAAATGAGAGTAGGT...GTTGGGTTTTCTGTGTTGGCCGATCATCATGATGTACAGATGGCATTTGTAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR GCA 90 bp | GCCTTTCTCTGGATTGAACGCACAGGTCAGTTGGGATTTCCTAAGCTGGAAAAGCTGTCGGACTTCTGCTaGTTTTTGGTTTCAGATTTC | + |
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Preference number: 4 (lower is better) Translates to: AFLWIERTGQLGFPKLEKLSDFC*FLVSDF Trigger: GAAATCTGAAACCAAAAAGCAGCAGAAGTCCGACAG...CTTTTCCAGCTTAGGAAATCCCAACTGACCTGTGCGTTCAATCCAGAGAAAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | ACTAACAAGCTCATAAGCTGTAATTATCCTCTTCCTTACTGTGGACACGAGGCAGTCAGCAGTCAGGTTTaGCAGGAACCAAAAGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: TNKLISCNYPLPYCGHEAVSSQV*QEPKVV Trigger: CACCACTTTTGGTTCCTGCCAAACCTGACTGCTGAC...TGCCTCGTGTCCACAGTAAGGAAGAGGATAATTACAGCTTATGAGCTTGTTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR TCA 90 bp | ATTCACATATGTACTATTCTTCCATCTGGACTCAGTTCCTGCTTAGTTCAATCCAGCCTGCGCCCACACTaGGGTAATAAACACCTACTC | + |
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Preference number: 4 (lower is better) Translates to: IHICTILPSGLSSCLVQSSLRPH*GNKHLL Trigger: GAGTAGGTGTTTATTACCTCAGTGTGGGCGCAGGCT...GGATTGAACTAAGCAGGAACTGAGTCCAGATGGAAGAATAGTACATATGTGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR GCA 90 bp | ACTAACAAGCTCATAAGCTGTAATTATCCTCTTCCTTACTGTGGACACGAGGCAAGGAACCAAAAGTGGTaGCTTCCTCCAGTTATCAGC | + |
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Preference number: 4 (lower is better) Translates to: TNKLISCNYPLPYCGHEARNQKW*LPPVIS Trigger: GCTGATAACTGGAGGAAGGCACCACTTTTGGTTCCT...TGCCTCGTGTCCACAGTAAGGAAGAGGATAATTACAGCTTATGAGCTTGTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | GTACCTCTGATGACTATCAAAATGAGGCCTACTTACTGTAAAATTATCAGATGGGGTTCACCAACTTCCTaGATCCGCTTCTTGTGTCGC | + |
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Preference number: 4 (lower is better) Translates to: VPLMTIKMRPTYCKIIRWGSPTS*IRFLCR Trigger: GCGACACAAGAAGCGGATCCAGGAAGTTGGTGAACC...CCATCTGATAATTTTACAGTAAGTAGGCCTCATTTTGATAGTCATCAGAGGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | ATCCATCACCTACTAACTACAAAGCAAAACCACCGTGTGACTAAAGGAAAATCAGGCAGGAACCAAAAGTaGTGCCTTCCTCCAGTTATC | + |
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Preference number: 4 (lower is better) Translates to: IHHLLTTKQNHRVTKGKSGRNQK*CLPPVI Trigger: GATAACTGGAGGAAGGCACCACTTTTGGTTCCTGCC...TGATTTTCCTTTAGTCACACGGTGGTTTTGCTTTGTAGTTAGTAGGTGATGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR GCA 90 bp | ACTAACAAGCTCATAAGCTGTAATTATCCTCTTCCTTACTGTGGACACGAGGCATCACTGTCGGACTTCTaGTGCTTTTTGGTTTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: TNKLISCNYPLPYCGHEASLSDF*CFLVSD Trigger: ATCTGAAACCAAAAAGCAGCAGAAGTCCGACAGTGA...TGCCTCGTGTCCACAGTAAGGAAGAGGATAATTACAGCTTATGAGCTTGTTAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | ATCCATCACCTACTAACTACAAAGCAAAACCACCGTGTGACTAAAGGAAAATCACTCCTTTCTTGGCCTTaGCCCACTTTGAATCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: IHHLLTTKQNHRVTKGKSLLSWP*PTLNPR Trigger: TCTTGGATTCAAAGTGGGCCAAGGCCAAGAAAGGAG...TGATTTTCCTTTAGTCACACGGTGGTTTTGCTTTGTAGTTAGTAGGTGATGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | GCCTTTCTCTGGATTGAACGCACAGGTCAGTTGGGATTTCCTAAGCTGGAAAAGTGTTTTAATGTGAACTaGGTCATAGATCCACACAAA | + |
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Preference number: 4 (lower is better) Translates to: AFLWIERTGQLGFPKLEKCFNVN*VIDPHK Trigger: TTTGTGTGGATCTATGACCCAGTTCACATTAAAACA...CTTTTCCAGCTTAGGAAATCCCAACTGACCTGTGCGTTCAATCCAGAGAAAGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | GTACCTCTGATGACTATCAAAATGAGGCCTACTTACTGTAAAATTATCAGATGGCAAGGAGAAGAATGCTaGCTACAAAACAGCCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: VPLMTIKMRPTYCKIIRWQGEEC*LQNSLR Trigger: GCGCAGGCTGTTTTGTAGCCAGCATTCTTCTCCTTG...CCATCTGATAATTTTACAGTAAGTAGGCCTCATTTTGATAGTCATCAGAGGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR TCA 90 bp | ATTCACATATGTACTATTCTTCCATCTGGACTCAGTTCCTGCTTAGTTCAATCCCCAGCTCCTCCTTCGTaGTCATTTCAAAATCATTCC | + |
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Preference number: 4 (lower is better) Translates to: IHICTILPSGLSSCLVQSPAPPS*SFQNHS Trigger: GGAATGATTTTGAAATGATCACGAAGGAGGAGCTGG...GGATTGAACTAAGCAGGAACTGAGTCCAGATGGAAGAATAGTACATATGTGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR GCA 90 bp | GTACCTCTGATGACTATCAAAATGAGGCCTACTTACTGTAAAATTATCAGATGGAGGGAAGAGGGTGGCTaGTATTACTGCAATCACAAG | + |
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Preference number: 4 (lower is better) Translates to: VPLMTIKMRPTYCKIIRWREEGG*YYCNHK Trigger: CTTGTGATTGCAGTAATAGCAGCCACCCTCTTCCCT...CCATCTGATAATTTTACAGTAAGTAGGCCTCATTTTGATAGTCATCAGAGGTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | TCCATCTGGACTCAGTTCCTGCTTAGTTCAATCCTGCATAGGCCAACATACATAGTTGGTGGATTTTGTTaGACAGTTGAATCGAAGATA | + |
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Preference number: 4 (lower is better) Translates to: SIWTQFLLSSILHRPTYIVGGFC*TVESKI Trigger: TATCTTCGATTCAACTGTCCAACAAAATCCACCAAC...TATGTATGTTGGCCTATGCAGGATTGAACTAAGCAGGAACTGAGTCCAGATGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | TATCAAAAATGCCCTTATTCTAAGTGTCATTGTGGACAATGTACCTCTGATGACAGAGAGGGAAGAGGGTaGCTGCTATTACTGCAATCA | + |
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Preference number: 4 (lower is better) Translates to: YQKCPYSKCHCGQCTSDDREGRG*LLLLQS Trigger: TGATTGCAGTAATAGCAGCCACCCTCTTCCCTCTCT...GTCATCAGAGGTACATTGTCCACAATGACACTTAGAATAAGGGCATTTTTGATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR TCA 90 bp | CTGGCTTGTTTCCACAAAATGCTCTTGATCCCTGCTAACTCAAAAACCTTAAAACCATCCAGAAAAACTTaGTCATCATGTGGCTCAAGT | + |
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Preference number: 4 (lower is better) Translates to: LACFHKMLLIPANSKTLKPSRKT*SSCGSS Trigger: ACTTGAGCCACATGATGATCAAGTTTTTCTGGATGG...TTTTAAGGTTTTTGAGTTAGCAGGGATCAAGAGCATTTTGTGGAAACAAGCCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | ATTCACATATGTACTATTCTTCCATCTGGACTCAGTTCCTGCTTAGTTCAATCCGATGACCCATCATGTTaGTGGATTTTGTTGGACAGT | + |
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Preference number: 4 (lower is better) Translates to: IHICTILPSGLSSCLVQSDDPSC*WILLDS Trigger: ACTGTCCAACAAAATCCACCAACATGATGGGTCATC...GGATTGAACTAAGCAGGAACTGAGTCCAGATGGAAGAATAGTACATATGTGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR TCA 90 bp | TATCAAAAATGCCCTTATTCTAAGTGTCATTGTGGACAATGTACCTCTGATGACGCACTCCACTGCTTTTaGAGCAATAAAATAGTCAAC | + |
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Preference number: 4 (lower is better) Translates to: YQKCPYSKCHCGQCTSDDALHCF*SNKIVN Trigger: GTTGACTATTTTATTGCTTCAAAAGCAGTGGAGTGC...GTCATCAGAGGTACATTGTCCACAATGACACTTAGAATAAGGGCATTTTTGATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | AACAGCCTAAAGGAGGATGAAGACCTATATATCCATCACCTACTAACTACAAAGGAGTTTCCTCCTTTTTaGAATCTTCCTTTTCACCAT | + |
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Preference number: 4 (lower is better) Translates to: NSLKEDEDLYIHHLLTTKEFPPF*NLPFHH Trigger: ATGGTGAAAAGGAAGATTCCAAAAAGGAGGAAACTC...CTTTGTAGTTAGTAGGTGATGGATATATAGGTCTTCATCCTCCTTTAGGCTGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CCA 90 bp | TATCAAAAATGCCCTTATTCTAAGTGTCATTGTGGACAATGTACCTCTGATGACACTTTTAGGGCCCGATaGAAAAACTGTTTCTTTAAA | + |
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Preference number: 4 (lower is better) Translates to: YQKCPYSKCHCGQCTSDDTFRAR*KNCFFK Trigger: TTTAAAGAAACAGTTTTTCCATCGGGCCCTAAAAGT...GTCATCAGAGGTACATTGTCCACAATGACACTTAGAATAAGGGCATTTTTGATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS TCA 90 bp | ACTGTGTTGCGAGCGGTCGTCTTCCCGCCTGTCACTGTCCGTGTCTaGGTGCCGCTCTCCGCCCGAGCCTTCTGGTCCATGGTCTGCCGG | + |
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Preference number: 5 (lower is better) Translates to: TVLRAVVFPPVTVRV*VPLSARAFWSMVCR Trigger: CCGGCAGACCATGGACCAGAAGGCTCGGGCGGAGAGCGGCACTCAGACACGGACAGTGACAGGCGGGAAGACGACCGCTCGCAACACAGT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS GCA 90 bp | TGTTGCGAGCGGTCGTCTTCCCGCCTGTCACTGTCCGTGTCTGAGTaGCGCTCTCCGCCCGAGCCTTCTGGTCCATGGTCTGCCGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: CCERSSSRLSLSVSE*RSPPEPSGPWSAGA Trigger: AGCTCCGGCAGACCATGGACCAGAAGGCTCGGGCGGAGAGCGGCACTCAGACACGGACAGTGACAGGCGGGAAGACGACCGCTCGCAACA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS GCA 90 bp | TCCTTCGTGATCATTTCAAAATCATTCCCGTTCCCGCTACTGTGTTaGGAGCGGTCGTCTTCCCGCCTGTCACTGTCCGTGTCTGAGTGC | + |
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Preference number: 5 (lower is better) Translates to: SFVIISKSFPFPLLC*ERSSSRLSLSVSEC Trigger: GCACTCAGACACGGACAGTGACAGGCGGGAAGACGACCGCTCGCAACACAGTAGCGGGAACGGGAATGATTTTGAAATGATCACGAAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CCA 90 bp | CAGGGGCCTGAAGGAGTCAATGAAGCCCACGTCAGCAGTCAGGTTTaGCAGGAACCAAAAGTGGTGCCTTCCTCCAGTTATCAGCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: QGPEGVNEAHVSSQV*QEPKVVPSSSYQPD Trigger: ATCTGGCTGATAACTGGAGGAAGGCACCACTTTTGGTTCCTGCCAAACCTGACTGCTGACGTGGGCTTCATTGACTCCTTCAGGCCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS GCA 90 bp | ACAGCCTGCGCCCACACTGAGGTAATAAACACCTACTCTCATTTCTaGTGGCCAGAGAGGGAAGAGGGTGGCTGCTATTACTGCAATCAC | + |
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Preference number: 5 (lower is better) Translates to: TACAHTEVINTYSHF*WPEREEGGCYYCNH Trigger: GTGATTGCAGTAATAGCAGCCACCCTCTTCCCTCTCTGGCCAGCAGAAATGAGAGTAGGTGTTTATTACCTCAGTGTGGGCGCAGGCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CCA 90 bp | GCCTGCGCCCACACTGAGGTAATAAACACCTACTCTCATTTCTGCTaGCCAGAGAGGGAAGAGGGTGGCTGCTATTACTGCAATCACAAG | + |
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Preference number: 5 (lower is better) Translates to: ACAHTEVINTYSHFC*PEREEGGCYYCNHK Trigger: CTTGTGATTGCAGTAATAGCAGCCACCCTCTTCCCTCTCTGGCCAGCAGAAATGAGAGTAGGTGTTTATTACCTCAGTGTGGGCGCAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | AGCCTCGCCGTCCAGTCAGCGCTCCTCACTTCTGCTGGAGATGACCGCCTTTCTTTGAATCGAAGATATTaGGCTACAGCCTTCTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SLAVQSALLTSAGDDRLSLNRRY*ATAFSS Trigger: AGAAGAGAAGGCTGTAGCCAAATATCTTCGATTCAA...AGAAAGGCGGTCATCTCCAGCAGAAGTGAGGAGCGCTGACTGGACGGCGAGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS GCA 90 bp | GCAGCGAGCAATAGCAAGGAGAAGAATGCTGGCTACAAAACAGCCTaGGCCCACACTGAGGTAATAAACACCTACTCTCATTTCTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: AASNSKEKNAGYKTA*AHTEVINTYSHFCW Trigger: CCAGCAGAAATGAGAGTAGGTGTTTATTACCTCAGTGTGGGCGCAGGCTGTTTTGTAGCCAGCATTCTTCTCCTTGCTATTGCTCGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS GCA 90 bp | CCATCTTTGTCGTCATCCTCCTCATCACAATCCCCATCTGTCTGCTaGTCCAGCTCCTCCTTCGTGATCATTTCAAAATCATTCCCGTTC | + |
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Preference number: 5 (lower is better) Translates to: PSLSSSSSSQSPSVC*SSSSFVIISKSFPF Trigger: GAACGGGAATGATTTTGAAATGATCACGAAGGAGGAGCTGGAGCAGCAGACAGATGGGGATTGTGATGAGGAGGATGACGACAAAGATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS GCA 90 bp | TCTCCATCTTTGTCGTCATCCTCCTCATCACAATCCCCATCTGTCTaGTGCTCCAGCTCCTCCTTCGTGATCATTTCAAAATCATTCCCG | + |
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Preference number: 5 (lower is better) Translates to: SPSLSSSSSSQSPSV*CSSSSFVIISKSFP Trigger: CGGGAATGATTTTGAAATGATCACGAAGGAGGAGCTGGAGCAGCAGACAGATGGGGATTGTGATGAGGAGGATGACGACAAAGATGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | TGCTACAAATGCCATCTGTACATCATGATGATCGGCCAACACAGAAAACCCAACGCGTCCTCTCCTTTCTaGGCCTTGGCCCACTTTGAA | + |
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Preference number: 5 (lower is better) Translates to: CYKCHLYIMMIGQHRKPNASSPF*ALAHFE Trigger: TTCAAAGTGGGCCAAGGCCAAGAAAGGAGAGGACGC...GTTGGGTTTTCTGTGTTGGCCGATCATCATGATGTACAGATGGCATTTGTAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | GTACCTCTGATGACTATCAAAATGAGGCCTACTTACTGTAAAATTATCAGATGGTCCTGGATCCGCTTCTaGTGTCGCCTGCGTTCCGCC | + |
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Preference number: 5 (lower is better) Translates to: VPLMTIKMRPTYCKIIRWSWIRF*CRLRSA Trigger: GGCGGAACGCAGGCGACACAAGAAGCGGATCCAGGA...CCATCTGATAATTTTACAGTAAGTAGGCCTCATTTTGATAGTCATCAGAGGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | AACAGCCTAAAGGAGGATGAAGACCTATATATCCATCACCTACTAACTACAAAGTGGCCTTGGCCCACTTaGAATCCAAGAGGCACTCCA | + |
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Preference number: 5 (lower is better) Translates to: NSLKEDEDLYIHHLLTTKWPWPT*NPRGTP Trigger: TGGAGTGCCTCTTGGATTCAAAGTGGGCCAAGGCCA...CTTTGTAGTTAGTAGGTGATGGATATATAGGTCTTCATCCTCCTTTAGGCTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | GCCTTTCTCTGGATTGAACGCACAGGTCAGTTGGGATTTCCTAAGCTGGAAAAGGACTTCTGCTGCTTTTaGGTTTCAGATTTCTCATCC | + |
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Preference number: 5 (lower is better) Translates to: AFLWIERTGQLGFPKLEKDFCCF*VSDFSS Trigger: GGATGAGAAATCTGAAACCAAAAAGCAGCAGAAGTC...CTTTTCCAGCTTAGGAAATCCCAACTGACCTGTGCGTTCAATCCAGAGAAAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | ATTCACATATGTACTATTCTTCCATCTGGACTCAGTTCCTGCTTAGTTCAATCCCGTCAGCAGTCAGGTTaGGCAGGAACCAAAAGTGGT | + |
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Preference number: 5 (lower is better) Translates to: IHICTILPSGLSSCLVQSRQQSG*AGTKSG Trigger: ACCACTTTTGGTTCCTGCCAAACCTGACTGCTGACG...GGATTGAACTAAGCAGGAACTGAGTCCAGATGGAAGAATAGTACATATGTGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | AACAGCCTAAAGGAGGATGAAGACCTATATATCCATCACCTACTAACTACAAAGTCTCCTTTCTTGGCCTaGGCCCACTTTGAATCCAAG | + |
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Preference number: 5 (lower is better) Translates to: NSLKEDEDLYIHHLLTTKSPFLA*AHFESK Trigger: CTTGGATTCAAAGTGGGCCAAGGCCAAGAAAGGAGA...CTTTGTAGTTAGTAGGTGATGGATATATAGGTCTTCATCCTCCTTTAGGCTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | TCCATCTGGACTCAGTTCCTGCTTAGTTCAATCCTGCATAGGCCAACATACATAGGAGTTTCCTCCTTTTaGGAATCTTCCTTTTCACCA | + |
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Preference number: 5 (lower is better) Translates to: SIWTQFLLSSILHRPTYIGVSSF*ESSFSP Trigger: TGGTGAAAAGGAAGATTCCAAAAAGGAGGAAACTCC...TATGTATGTTGGCCTATGCAGGATTGAACTAAGCAGGAACTGAGTCCAGATGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | GTACCTCTGATGACTATCAAAATGAGGCCTACTTACTGTAAAATTATCAGATGGGGCACCTCTCCATCTTaGTCGTCATCCTCCTCATCA | + |
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Preference number: 5 (lower is better) Translates to: VPLMTIKMRPTYCKIIRWGTSPS*SSSSSS Trigger: TGATGAGGAGGATGACGACAAAGATGGAGAGGTGCC...CCATCTGATAATTTTACAGTAAGTAGGCCTCATTTTGATAGTCATCAGAGGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | AGCCTAAAGGAGGATGAAGACCTATATATCCATCACCTACTAACTACAAAGCAATCTGCTTTTGGTCCTTaGTACTCATGTGTGTACAGG | + |
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Preference number: 5 (lower is better) Translates to: SLKEDEDLYIHHLLTTKQSAFGP*YSCVYR Trigger: CCTGTACACACATGAGTACAAAGGACCAAAAGCAGA...TTGCTTTGTAGTTAGTAGGTGATGGATATATAGGTCTTCATCCTCCTTTAGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | AGCCTAAAGGAGGATGAAGACCTATATATCCATCACCTACTAACTACAAAGCAATCTTTAAGTCTGCTTTaGGTCCTTTGTACTCATGTG | + |
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Preference number: 5 (lower is better) Translates to: SLKEDEDLYIHHLLTTKQSLSLL*VLCTHV Trigger: CACATGAGTACAAAGGACCAAAAGCAGACTTAAAGA...TTGCTTTGTAGTTAGTAGGTGATGGATATATAGGTCTTCATCCTCCTTTAGGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS-3UTR CAA 90 bp | AACAGCCTAAAGGAGGATGAAGACCTATATATCCATCACCTACTAACTACAAAGGATTTTGTTGGACAGTaGAATCGAAGATATTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: NSLKEDEDLYIHHLLTTKDFVGQ*NRRYLA Trigger: AGCCAAATATCTTCGATTCAACTGTCCAACAAAATC...CTTTGTAGTTAGTAGGTGATGGATATATAGGTCTTCATCCTCCTTTAGGCTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS TCA 72 bp | CGAGCGGTCGTCTTCCCGCCTGTCACTGTCCGTGTCTaGGTGCCGCTCTCCGCCCGAGCCTTCTGGTCCATG | + |
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Preference number: 6 (lower is better) Translates to: RAVVFPPVTVRV*VPLSARAFWSM Trigger: CATGGACCAGAAGGCTCGGGCGGAGAGCGGCACTCAGACACGGACAGTGACAGGCGGGAAGACGACCGCTCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS GCA 72 bp | CGGTCGTCTTCCCGCCTGTCACTGTCCGTGTCTGAGTaGCGCTCTCCGCCCGAGCCTTCTGGTCCATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: RSSSRLSLSVSE*RSPPEPSGPWS Trigger: AGACCATGGACCAGAAGGCTCGGGCGGAGAGCGGCACTCAGACACGGACAGTGACAGGCGGGAAGACGACCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CCA 72 bp | TCTGAGTGCCGCTCTCCGCCCGAGCCTTCTGGTCCATaGTCTGCCGGAGCTCCTTTCCCTTCCTCATCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SECRSPPEPSGP*SAGAPFPSSSS Trigger: GGAGGATGAGGAAGGGAAAGGAGCTCCGGCAGACCATGGACCAGAAGGCTCGGGCGGAGAGCGGCACTCAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS GCA 72 bp | ATCATTTCAAAATCATTCCCGTTCCCGCTACTGTGTTaGGAGCGGTCGTCTTCCCGCCTGTCACTGTCCGTG | + |
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Preference number: 6 (lower is better) Translates to: IISKSFPFPLLC*ERSSSRLSLSV Trigger: CACGGACAGTGACAGGCGGGAAGACGACCGCTCGCAACACAGTAGCGGGAACGGGAATGATTTTGAAATGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CAA 72 bp | GATCATTTCAAAATCATTCCCGTTCCCGCTACTGTGTaGCGAGCGGTCGTCTTCCCGCCTGTCACTGTCCGT | + |
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Preference number: 6 (lower is better) Translates to: DHFKIIPVPATV*RAVVFPPVTVR Trigger: ACGGACAGTGACAGGCGGGAAGACGACCGCTCGCAACACAGTAGCGGGAACGGGAATGATTTTGAAATGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CCA 72 bp | CCCACGTCAGCAGTCAGGTTTGGCAGGAACCAAAAGTaGTGCCTTCCTCCAGTTATCAGCCAGATGATGAGA | + |
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Preference number: 6 (lower is better) Translates to: PTSAVRFGRNQK*CLPPVISQMMR Trigger: TCTCATCATCTGGCTGATAACTGGAGGAAGGCACCACTTTTGGTTCCTGCCAAACCTGACTGCTGACGTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CCA 72 bp | GAAGGAGTCAATGAAGCCCACGTCAGCAGTCAGGTTTaGCAGGAACCAAAAGTGGTGCCTTCCTCCAGTTAT | + |
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Preference number: 6 (lower is better) Translates to: EGVNEAHVSSQV*QEPKVVPSSSY Trigger: ATAACTGGAGGAAGGCACCACTTTTGGTTCCTGCCAAACCTGACTGCTGACGTGGGCTTCATTGACTCCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CAA 72 bp | GACTCCCTGGTTGTAAATAAAGCGTCCTCTCCTTTCTaGGCCTTGGCCCACTTTGAATCCAAGAGGCACTCC | + |
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Preference number: 6 (lower is better) Translates to: DSLVVNKASSPF*ALAHFESKRHS Trigger: GGAGTGCCTCTTGGATTCAAAGTGGGCCAAGGCCAAGAAAGGAGAGGACGCTTTATTTACAACCAGGGAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CAA 90 bp | TCGACCACAGACTCCCTGGTTGTAAATAAAGCGTCCTCTCCTTTCTaGGCCTTGGCCCACTTTGAATCCAAGAGGCACTCCACTGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: STTDSLVVNKASSPF*ALAHFESKRHSTAF Trigger: AAAAGCAGTGGAGTGCCTCTTGGATTCAAAGTGGGCCAAGGCCAAGAAAGGAGAGGACGCTTTATTTACAACCAGGGAGTCTGTGGTCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS TCA 72 bp | AATCCCCATCTGTCTGCTGCTCCAGCTCCTCCTTCGTaGTCATTTCAAAATCATTCCCGTTCCCGCTACTGT | + |
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Preference number: 6 (lower is better) Translates to: NPHLSAAPAPPS*SFQNHSRSRYC Trigger: ACAGTAGCGGGAACGGGAATGATTTTGAAATGATCACGAAGGAGGAGCTGGAGCAGCAGACAGATGGGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CCA 72 bp | CACACTGAGGTAATAAACACCTACTCTCATTTCTGCTaGCCAGAGAGGGAAGAGGGTGGCTGCTATTACTGC | + |
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Preference number: 6 (lower is better) Translates to: HTEVINTYSHFC*PEREEGGCYYC Trigger: GCAGTAATAGCAGCCACCCTCTTCCCTCTCTGGCCAGCAGAAATGAGAGTAGGTGTTTATTACCTCAGTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CAA 72 bp | CTGGTTGTAAATAAAGCGTCCTCTCCTTTCTTGGCCTaGGCCCACTTTGAATCCAAGAGGCACTCCACTGCT | + |
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Preference number: 6 (lower is better) Translates to: LVVNKASSPFLA*AHFESKRHSTA Trigger: AGCAGTGGAGTGCCTCTTGGATTCAAAGTGGGCCAAGGCCAAGAAAGGAGAGGACGCTTTATTTACAACCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CAA 90 bp | ACAGACTCCCTGGTTGTAAATAAAGCGTCCTCTCCTTTCTTGGCCTaGGCCCACTTTGAATCCAAGAGGCACTCCACTGCTTTTGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: TDSLVVNKASSPFLA*AHFESKRHSTAFEA Trigger: TGCTTCAAAAGCAGTGGAGTGCCTCTTGGATTCAAAGTGGGCCAAGGCCAAGAAAGGAGAGGACGCTTTATTTACAACCAGGGAGTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS GCA 72 bp | TTGTCGTCATCCTCCTCATCACAATCCCCATCTGTCTaGTGCTCCAGCTCCTCCTTCGTGATCATTTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: LSSSSSSQSPSV*CSSSSFVIISK Trigger: TTTTGAAATGATCACGAAGGAGGAGCTGGAGCAGCAGACAGATGGGGATTGTGATGAGGAGGATGACGACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CAA 72 bp | GATTTCTCATGTGCAGATTTAGGCACCTCTCCATCTTaGTCGTCATCCTCCTCATCACAATCCCCATCTGTC | + |
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Preference number: 6 (lower is better) Translates to: DFSCADLGTSPS*SSSSSSQSPSV Trigger: GACAGATGGGGATTGTGATGAGGAGGATGACGACAAAGATGGAGAGGTGCCTAAATCTGCACATGAGAAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CAA 90 bp | CCCATCATGTTGGTGGATTTTGTTGGACAGTTGAATCGAAGATATTaGGCTACAGCCTTCTCTTCTTTAGATGGTTCACCAACTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: PIMLVDFVGQLNRRY*ATAFSSLDGSPTSW Trigger: CCAGGAAGTTGGTGAACCATCTAAAGAAGAGAAGGCTGTAGCCAAATATCTTCGATTCAACTGTCCAACAAAATCCACCAACATGATGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS TCA 72 bp | GATGACCCATCATGTTGGTGGATTTTGTTGGACAGTTaGATCGAAGATATTTGGCTACAGCCTTCTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: DDPSCWWILLDS*IEDIWLQPSLL Trigger: AAGAAGAGAAGGCTGTAGCCAAATATCTTCGATTCAACTGTCCAACAAAATCCACCAACATGATGGGTCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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| CDS CAA 72 bp | TTGGTGGATTTTGTTGGACAGTTGAATCGAAGATATTaGGCTACAGCCTTCTCTTCTTTAGATGGTTCACCA | + |
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Preference number: 6 (lower is better) Translates to: LVDFVGQLNRRY*ATAFSSLDGSP Trigger: TGGTGAACCATCTAAAGAAGAGAAGGCTGTAGCCAAATATCTTCGATTCAACTGTCCAACAAAATCCACCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029256.9 |
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